Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30768.t1 | XP_003601104.1 | 97 | 1020 | 27 | 1 | 1 | 1020 | 1 | 1016 | 0.00E+00 | 1662.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30768.t1 | F4IUY8 | 51.1 | 1040 | 414 | 20 | 2 | 1017 | 37 | 1005 | 7.4e-229 | 795.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30768.t1 | G7J3M1 | 97.0 | 1020 | 27 | 1 | 1 | 1020 | 1 | 1016 | 0.0e+00 | 1662.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene30768 | -0.820342 | 7.21E-53 | -1.69E-46 |
| MS.gene049382 | MS.gene30768 | -0.806757 | 7.04E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene30768 | -0.807954 | 3.93E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene30768 | -0.81748 | 3.23E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene30768 | -0.808956 | 2.40E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene30768 | -0.805968 | 1.03E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene30768 | 0.831278 | 1.83E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene30768 | -0.810751 | 9.86E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene30768 | -0.812366 | 4.40E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene30768 | -0.8265 | 2.62E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene30768 | -0.812865 | 3.42E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene30768 | -0.820526 | 6.55E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30768.t1 | MTR_3g073080 | 98.039 | 1020 | 16 | 1 | 1 | 1020 | 1 | 1016 | 0.0 | 2066 |
| MS.gene30768.t1 | MTR_3g073080 | 98.389 | 745 | 12 | 0 | 276 | 1020 | 8 | 752 | 0.0 | 1532 |
| MS.gene30768.t1 | MTR_3g073080 | 98.175 | 548 | 10 | 0 | 473 | 1020 | 1 | 548 | 0.0 | 1130 |
| MS.gene30768.t1 | MTR_1g115940 | 50.314 | 159 | 39 | 5 | 850 | 975 | 1 | 152 | 8.30e-37 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30768.t1 | AT2G39340 | 52.975 | 1042 | 391 | 23 | 2 | 1017 | 37 | 1005 | 0.0 | 949 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGGTAATTCATCAAATT+TGG | 0.051963 | 3.1:+59892856 | MS.gene30768:CDS |
| TCCTGCTGTGCCGCCTTTAC+AGG | 0.137684 | 3.1:+59893513 | MS.gene30768:CDS |
| GTACCCTATGCACACGTAAT+TGG | 0.176540 | 3.1:+59897087 | MS.gene30768:CDS |
| CGTTCTAAGCGATTTGATTT+AGG | 0.215889 | 3.1:+59900220 | MS.gene30768:CDS |
| TTCTTCTTATGATAAATTTC+AGG | 0.216493 | 3.1:+59894000 | MS.gene30768:CDS |
| ATTTCCTCCTTTCAGAATAC+TGG | 0.222746 | 3.1:+59893061 | MS.gene30768:CDS |
| TCCAAATGACTTTGATAGTT+TGG | 0.223926 | 3.1:-59893971 | None:intergenic |
| CTTACAAAGTGCTCCATCTT+TGG | 0.247433 | 3.1:+59894117 | MS.gene30768:CDS |
| CACAATCATATCCACAATAT+TGG | 0.249589 | 3.1:+59893473 | MS.gene30768:CDS |
| CTCGATATTCTCTGAAATAA+TGG | 0.250084 | 3.1:-59900028 | None:intergenic |
| GAACTTAAACACCTGCCTTA+TGG | 0.252251 | 3.1:+59903288 | MS.gene30768:CDS |
| GATGAATTTGAGAACTAGTT+TGG | 0.252769 | 3.1:-59893889 | None:intergenic |
| GATTGTGGAGGCTGGTAATT+TGG | 0.255276 | 3.1:-59893457 | None:intergenic |
| AACTTAAACACCTGCCTTAT+GGG | 0.259233 | 3.1:+59903289 | MS.gene30768:CDS |
| CTGCTTCTTAAATGGCCTTT+GGG | 0.260755 | 3.1:-59900059 | None:intergenic |
| CCTCCGGGCGGCTGCGGCTG+CGG | 0.278884 | 3.1:-59892800 | None:intergenic |
| TTGCGTATCCGTTGCTGTTT+TGG | 0.287700 | 3.1:-59893156 | None:intergenic |
| GTAGTACCTTGACTGTTAAT+TGG | 0.288051 | 3.1:-59900694 | None:intergenic |
| GCGGCTGCGGCTGCGGATGC+TGG | 0.296808 | 3.1:-59892793 | None:intergenic |
| CTTTGATAGTTTGGTTGAAT+AGG | 0.300385 | 3.1:-59893962 | None:intergenic |
| CCCGGTTGGCACTGGAAGTT+GGG | 0.303099 | 3.1:+59901052 | MS.gene30768:CDS |
| TTAACTGGTCACATTTATAA+AGG | 0.309288 | 3.1:-59900631 | None:intergenic |
| CCGTGGGCCACAGCATCTTC+TGG | 0.309619 | 3.1:-59903932 | None:intergenic |
| ATTTATAAAGGTAATTCCTT+TGG | 0.313444 | 3.1:-59900619 | None:intergenic |
| GTCCCAAGTTCATCTACTTT+GGG | 0.314090 | 3.1:+59893379 | MS.gene30768:CDS |
| GCTGGTAATTCATCAAATTT+GGG | 0.328650 | 3.1:+59892857 | MS.gene30768:CDS |
| ACCAAACTATCAAAGTCATT+TGG | 0.335372 | 3.1:+59893970 | MS.gene30768:CDS |
| GCCAGACGCTGCTTCTTAAA+TGG | 0.336651 | 3.1:-59900067 | None:intergenic |
| TTGGTTGAATAGGATTAGTT+TGG | 0.345571 | 3.1:-59893952 | None:intergenic |
| CCGGTTCTGAAGCCGTTTCA+TGG | 0.359758 | 3.1:+59892714 | MS.gene30768:CDS |
| TTTATAAAGGTAATTCCTTT+GGG | 0.360413 | 3.1:-59900618 | None:intergenic |
| TCTTCTAATCCATATGGTTA+TGG | 0.361279 | 3.1:+59892929 | MS.gene30768:CDS |
| GCCCGGTTGGCACTGGAAGT+TGG | 0.361684 | 3.1:+59901051 | MS.gene30768:CDS |
| TGTCCCAAGTTCATCTACTT+TGG | 0.362411 | 3.1:+59893378 | MS.gene30768:CDS |
| AGGGATTGAAGGCTCGTATA+TGG | 0.363531 | 3.1:+59902314 | MS.gene30768:CDS |
| GCTGCTTCTTAAATGGCCTT+TGG | 0.363898 | 3.1:-59900060 | None:intergenic |
| TCCTACGTATCTCAGGTTCT+AGG | 0.367060 | 3.1:+59903464 | MS.gene30768:CDS |
| ACAGACAAGTTCTCTGTCCC+TGG | 0.368424 | 3.1:-59893358 | None:intergenic |
| GTATTCTGAAAGGAGGAAAT+AGG | 0.369237 | 3.1:-59893058 | None:intergenic |
| ATGCACACGTAATTGGGATA+TGG | 0.369705 | 3.1:+59897094 | MS.gene30768:CDS |
| CTTGGCGAATAGACTTTAAC+TGG | 0.370716 | 3.1:-59900646 | None:intergenic |
| TGAGAAAGAGGCCGCTGCTT+TGG | 0.381159 | 3.1:+59903523 | MS.gene30768:CDS |
| CCATGAAACGGCTTCAGAAC+CGG | 0.383264 | 3.1:-59892714 | None:intergenic |
| ACCATCTTGAACGCTTCCTC+CGG | 0.390387 | 3.1:-59892816 | None:intergenic |
| ATGAATTTGAGAACTAGTTT+GGG | 0.391251 | 3.1:-59893888 | None:intergenic |
| ACAATCATATCCACAATATT+GGG | 0.394098 | 3.1:+59893474 | MS.gene30768:CDS |
| TACCCTATGCACACGTAATT+GGG | 0.398034 | 3.1:+59897088 | MS.gene30768:CDS |
| TGTGTATTCGTTGCACAGTT+AGG | 0.398571 | 3.1:-59900670 | None:intergenic |
| CTGCATCTGCATCCGGCATT+GGG | 0.399376 | 3.1:-59897127 | None:intergenic |
| TTCGTTGCACAGTTAGGTCT+TGG | 0.401797 | 3.1:-59900664 | None:intergenic |
| GCAGGAGCAGGAGCAGGAAC+AGG | 0.402832 | 3.1:-59893406 | None:intergenic |
| GTGGTGGTCATGATGATTAC+TGG | 0.404253 | 3.1:+59893855 | MS.gene30768:CDS |
| CCCCAACTTCCAGTGCCAAC+CGG | 0.405728 | 3.1:-59901053 | None:intergenic |
| GGTGAATTTGAGAACTAGTT+TGG | 0.406505 | 3.1:-59893931 | None:intergenic |
| TGGGATCTGGTGCCGATGTT+AGG | 0.407294 | 3.1:-59900438 | None:intergenic |
| GATATTACGGTGGTGGGATC+TGG | 0.408092 | 3.1:-59900451 | None:intergenic |
| GGCTGTGAATAAGCATGATT+TGG | 0.409455 | 3.1:-59892998 | None:intergenic |
| ACCTGTAAAGGCGGCACAGC+AGG | 0.410044 | 3.1:-59893514 | None:intergenic |
| CAAAGATGGAGCACTTTGTA+AGG | 0.411359 | 3.1:-59894116 | None:intergenic |
| GCAAATTCTTCTAATCCATA+TGG | 0.411362 | 3.1:+59892923 | MS.gene30768:CDS |
| GCCACAGCATCTTCTGGCTC+TGG | 0.417167 | 3.1:-59903926 | None:intergenic |
| GCTGCGGATGCTGGTCATAC+TGG | 0.421733 | 3.1:-59892784 | None:intergenic |
| CAACAGAAGGGCTAGTGCTC+TGG | 0.424865 | 3.1:+59900306 | MS.gene30768:CDS |
| TGCTGCTAATTCAATACTTA+AGG | 0.425260 | 3.1:+59894312 | MS.gene30768:CDS |
| TCTGCATCTGCATCCGGCAT+TGG | 0.425559 | 3.1:-59897128 | None:intergenic |
| AAGCTAACCTGATTATATTC+AGG | 0.427569 | 3.1:-59901081 | None:intergenic |
| GTCAAATTTGAAGCAATTCG+AGG | 0.427572 | 3.1:-59894178 | None:intergenic |
| ATCAGCCACAATACAATCAA+TGG | 0.427782 | 3.1:+59893299 | MS.gene30768:CDS |
| CTTAGCAAAAGCTTTGATAA+TGG | 0.428213 | 3.1:+59900331 | MS.gene30768:CDS |
| ACCGGCTTCTCCTCTGGTAA+TGG | 0.429110 | 3.1:-59898554 | None:intergenic |
| TTATTGTCTGCATCTGCATC+CGG | 0.434326 | 3.1:-59897134 | None:intergenic |
| TTCACCTTGCCATTGATGAT+AGG | 0.435816 | 3.1:-59902395 | None:intergenic |
| GTTCGTGCAGCTGTAACTTC+AGG | 0.440910 | 3.1:+59903226 | MS.gene30768:CDS |
| AACATAGCCACGCAAAGACT+TGG | 0.445716 | 3.1:-59895680 | None:intergenic |
| CTTTATGCTGAAGGGATTGA+AGG | 0.447826 | 3.1:+59902303 | MS.gene30768:CDS |
| GACACAGGATGATGGTTAAC+CGG | 0.448056 | 3.1:-59898635 | None:intergenic |
| GCAGGAGCAGGAGCAGGAGC+AGG | 0.449229 | 3.1:-59893412 | None:intergenic |
| AGGAAGAGGGAAGTACAAAT+TGG | 0.449984 | 3.1:-59894056 | None:intergenic |
| TGGGATGCTCTTACTGTAAA+GGG | 0.453003 | 3.1:+59900382 | MS.gene30768:CDS |
| GAAGCAATTCGAGGATTTGT+TGG | 0.453082 | 3.1:-59894169 | None:intergenic |
| CAAAGACTTGGGAAACATAC+CGG | 0.453318 | 3.1:-59895668 | None:intergenic |
| ACTTTGGCAATACAGAATCA+TGG | 0.453712 | 3.1:-59898493 | None:intergenic |
| TCAGTGCCAATCTCAGTTGA+AGG | 0.454773 | 3.1:+59902278 | MS.gene30768:intron |
| ATACTGTAAAATACAGTAGT+TGG | 0.455481 | 3.1:+59898606 | MS.gene30768:CDS |
| TGGCTATGTTGAAAGAGCTT+TGG | 0.455514 | 3.1:+59895693 | MS.gene30768:CDS |
| AGGCGGCACAGCAGGAGTGC+TGG | 0.456913 | 3.1:-59893506 | None:intergenic |
| AACTCACGCCCGGTTGGCAC+TGG | 0.457874 | 3.1:+59901044 | MS.gene30768:CDS |
| GACACAGGATGATGGTCAAC+CGG | 0.463264 | 3.1:-59898572 | None:intergenic |
| ATAAGGCAGGTGTTTAAGTT+CGG | 0.463914 | 3.1:-59903286 | None:intergenic |
| CCTGCTGATTATCAGACTAC+TGG | 0.464067 | 3.1:+59893127 | MS.gene30768:CDS |
| TAAGCAAATGGCAGCATGCC+AGG | 0.464128 | 3.1:+59895732 | MS.gene30768:CDS |
| CAACCCAAAGTAGATGAACT+TGG | 0.465843 | 3.1:-59893382 | None:intergenic |
| CAGAATACTGGGTCTAATGC+TGG | 0.466623 | 3.1:+59893073 | MS.gene30768:CDS |
| GCCATTTAAGAAGCAGCGTC+TGG | 0.467634 | 3.1:+59900066 | MS.gene30768:CDS |
| TGGTCAACCGGCTTCTCCTC+TGG | 0.472769 | 3.1:-59898560 | None:intergenic |
| TTTCCTCCTTTCAGAATACT+GGG | 0.474082 | 3.1:+59893062 | MS.gene30768:CDS |
| CATCCGCAGCCGCAGCCGCC+CGG | 0.474421 | 3.1:+59892797 | MS.gene30768:CDS |
| AGAAGGCTTCAGTGCTGCAC+TGG | 0.475162 | 3.1:-59894239 | None:intergenic |
| CTTCAGTGCTGCACTGGATG+TGG | 0.476606 | 3.1:-59894233 | None:intergenic |
| GAATGGCATGCAGGTGGTAG+TGG | 0.477039 | 3.1:+59899958 | MS.gene30768:intron |
| ACGCTTCCTCCGGGCGGCTG+CGG | 0.478155 | 3.1:-59892806 | None:intergenic |
| CCATCTTGAACGCTTCCTCC+GGG | 0.479559 | 3.1:-59892815 | None:intergenic |
| ACCCGTTTCCTACGTATCTC+AGG | 0.479856 | 3.1:+59903457 | MS.gene30768:CDS |
| AAAATCATTAACAGCAAGGT+TGG | 0.480465 | 3.1:-59903960 | None:intergenic |
| AAAGAGCCTTCAACTGAGAT+TGG | 0.480592 | 3.1:-59902284 | None:intergenic |
| CTGGGATGCTCTTACTGTAA+AGG | 0.481316 | 3.1:+59900381 | MS.gene30768:CDS |
| ACCTGAGATACGTAGGAAAC+GGG | 0.485335 | 3.1:-59903458 | None:intergenic |
| TACTGTAAAGGGTACCTGCC+AGG | 0.488396 | 3.1:+59900393 | MS.gene30768:CDS |
| GCCTAATGAAAAGGATAGAA+AGG | 0.490421 | 3.1:+59898694 | MS.gene30768:CDS |
| AACCTGAGATACGTAGGAAA+CGG | 0.491900 | 3.1:-59903459 | None:intergenic |
| TTTATTGCAACCATGACATC+CGG | 0.492138 | 3.1:+59892695 | None:intergenic |
| CCACTAGTAGCTGCAGGAGC+AGG | 0.492394 | 3.1:-59893424 | None:intergenic |
| GTAGCTGCAGGAGCAGGAGC+AGG | 0.494561 | 3.1:-59893418 | None:intergenic |
| AAGGAGGAAATAGGCTGATA+AGG | 0.496384 | 3.1:-59893049 | None:intergenic |
| ACAGAAGTCAGTTGTGCCCC+AGG | 0.496956 | 3.1:+59893340 | MS.gene30768:CDS |
| CAGTTGGGTGCCTAATGAAA+AGG | 0.497364 | 3.1:+59898685 | MS.gene30768:CDS |
| ACCAGCACTATAAGAGCTAC+TGG | 0.497565 | 3.1:-59893254 | None:intergenic |
| CCCGTGCTGCCATAACCATA+TGG | 0.497830 | 3.1:-59892938 | None:intergenic |
| TCCAGTAGCTCTTATAGTGC+TGG | 0.500782 | 3.1:+59893253 | MS.gene30768:CDS |
| TTGAAGGCTCTTTATGCTGA+AGG | 0.501894 | 3.1:+59902294 | MS.gene30768:CDS |
| TCTGTGGCGTAACTTGTATA+CGG | 0.502129 | 3.1:-59893229 | None:intergenic |
| GACTCTTGTGCCCAATATTG+TGG | 0.504410 | 3.1:-59893484 | None:intergenic |
| GGACCTGCCTGAATATAATC+AGG | 0.505112 | 3.1:+59901074 | MS.gene30768:CDS |
| CCGCAGCCGCAGCCGCCCGG+AGG | 0.507114 | 3.1:+59892800 | MS.gene30768:CDS |
| GTAGGAGCATATCAAAATAC+AGG | 0.512154 | 3.1:+59893022 | MS.gene30768:CDS |
| TGAAGCTGTAAAACATGCTC+TGG | 0.512592 | 3.1:+59903201 | MS.gene30768:CDS |
| TTGTAAAGATGATAAGCAAA+TGG | 0.513557 | 3.1:+59895720 | MS.gene30768:CDS |
| AAAAGGAGATATTACGGTGG+TGG | 0.513577 | 3.1:-59900458 | None:intergenic |
| AGCATATTATTCTGCTGCAA+TGG | 0.515581 | 3.1:+59900156 | MS.gene30768:CDS |
| GTTATCTGACGAAGCAAAGA+AGG | 0.515818 | 3.1:+59903177 | MS.gene30768:CDS |
| CCATATGGTTATGGCAGCAC+GGG | 0.516635 | 3.1:+59892938 | MS.gene30768:CDS |
| CCCAACTTCCAGTGCCAACC+GGG | 0.520602 | 3.1:-59901052 | None:intergenic |
| CTTTGGCAATACAGAATCAT+GGG | 0.521252 | 3.1:-59898492 | None:intergenic |
| GGCTTCAGAACCGGATGTCA+TGG | 0.522158 | 3.1:-59892705 | None:intergenic |
| ATCCCAATTACGTGTGCATA+GGG | 0.522319 | 3.1:-59897090 | None:intergenic |
| ATACTGTAAAATACAGCAGT+TGG | 0.522691 | 3.1:+59898669 | MS.gene30768:CDS |
| AGTGATATTCAAACCTGTAA+AGG | 0.522822 | 3.1:-59893526 | None:intergenic |
| TGAAGCAAATGATGAGAAAG+AGG | 0.523008 | 3.1:+59903511 | MS.gene30768:CDS |
| TTAGATGATAGTTTCTCAGT+TGG | 0.523740 | 3.1:-59894286 | None:intergenic |
| CAGACAAGTTCTCTGTCCCT+GGG | 0.524755 | 3.1:-59893357 | None:intergenic |
| TGCATCTAGTGATAGTGATA+AGG | 0.526272 | 3.1:+59900120 | MS.gene30768:CDS |
| TACTTGTTGACACAGGATGA+TGG | 0.527108 | 3.1:-59898643 | None:intergenic |
| CCTGCATGTGCCGATCATAT+CGG | 0.528944 | 3.1:+59903426 | MS.gene30768:CDS |
| CAAAGTGTATCATCAGTTGC+TGG | 0.530028 | 3.1:+59892839 | MS.gene30768:CDS |
| CCACCACTATTTACTGCAGC+AGG | 0.530413 | 3.1:-59893839 | None:intergenic |
| AATGAAACAGCAATATAAGA+AGG | 0.531112 | 3.1:-59894256 | None:intergenic |
| GCTCTGAACGTTCCATGAAA+CGG | 0.532106 | 3.1:-59892726 | None:intergenic |
| CCAGAAGATGCTGTGGCCCA+CGG | 0.533746 | 3.1:+59903932 | MS.gene30768:CDS |
| CCAGTAGTCTGATAATCAGC+AGG | 0.536187 | 3.1:-59893127 | None:intergenic |
| TACTTGTTGACACAGGATGA+TGG | 0.536480 | 3.1:-59898580 | None:intergenic |
| GCCATTACCAGAGGAGAAGC+CGG | 0.537479 | 3.1:+59898553 | MS.gene30768:CDS |
| TACTGTAAAATACAGTAGTT+GGG | 0.538465 | 3.1:+59898607 | MS.gene30768:CDS |
| TTTGTCGATACTAACCCATA+AGG | 0.539493 | 3.1:-59903303 | None:intergenic |
| CAGAGAACTCCTATCATCAA+TGG | 0.540998 | 3.1:+59902386 | MS.gene30768:CDS |
| CCGATATGATCGGCACATGC+AGG | 0.542062 | 3.1:-59903426 | None:intergenic |
| GGCGCCAGATTCACCTGTTG+AGG | 0.542468 | 3.1:-59894094 | None:intergenic |
| TGCTTCTTAAATGGCCTTTG+GGG | 0.542792 | 3.1:-59900058 | None:intergenic |
| TGAAGGCTCTTTATGCTGAA+GGG | 0.544137 | 3.1:+59902295 | MS.gene30768:CDS |
| TATCCCAATTACGTGTGCAT+AGG | 0.545696 | 3.1:-59897091 | None:intergenic |
| TCAGCCACAATACAATCAAT+GGG | 0.547636 | 3.1:+59893300 | MS.gene30768:CDS |
| GCGCCAGATTCACCTGTTGA+GGG | 0.548174 | 3.1:-59894093 | None:intergenic |
| TGCTGGTCATACTGGTAGGT+CGG | 0.548260 | 3.1:-59892776 | None:intergenic |
| ATACAGTAGTTGGGTGCCGC+CGG | 0.548866 | 3.1:+59898616 | MS.gene30768:CDS |
| AGCATAATTGCTGACAACAA+TGG | 0.549128 | 3.1:+59903581 | MS.gene30768:CDS |
| TACTGTAAAATACAGCAGTT+GGG | 0.549203 | 3.1:+59898670 | MS.gene30768:CDS |
| TCACCTCTTTCATGACAGCC+TGG | 0.549405 | 3.1:-59895750 | None:intergenic |
| ATTGTTGTCAGCAATTATGC+TGG | 0.550410 | 3.1:-59903579 | None:intergenic |
| CTTTGGAAGAGTGTTTAGAA+TGG | 0.551550 | 3.1:+59903540 | MS.gene30768:CDS |
| CTGGAAACTTGTACAACAGA+AGG | 0.551854 | 3.1:+59900293 | MS.gene30768:CDS |
| TGGTGTCAGCAAAGCTGTTG+AGG | 0.553579 | 3.1:+59900351 | MS.gene30768:CDS |
| CGGATGCTGGTCATACTGGT+AGG | 0.555373 | 3.1:-59892780 | None:intergenic |
| TCCATATGGTTATGGCAGCA+CGG | 0.557054 | 3.1:+59892937 | MS.gene30768:CDS |
| AAGCTGTTGAGGATATTGAC+TGG | 0.559177 | 3.1:+59900362 | MS.gene30768:CDS |
| GCCAGATTCACCTGTTGAGG+GGG | 0.559645 | 3.1:-59894091 | None:intergenic |
| AAAGGAGATATTACGGTGGT+GGG | 0.560052 | 3.1:-59900457 | None:intergenic |
| AGAGCAAGGAAGACAGTTGG+AGG | 0.560733 | 3.1:+59899990 | MS.gene30768:CDS |
| CCTGCTCCTGCAGCTACTAG+TGG | 0.561241 | 3.1:+59893424 | MS.gene30768:CDS |
| AAGAGAGCAAGGAAGACAGT+TGG | 0.562299 | 3.1:+59899987 | MS.gene30768:CDS |
| TAACCTGATTATATTCAGGC+AGG | 0.562357 | 3.1:-59901077 | None:intergenic |
| GTGGATATGATTGTGGAGGC+TGG | 0.565484 | 3.1:-59893465 | None:intergenic |
| GGAACCACTCTTCCCAATGC+CGG | 0.566052 | 3.1:+59897115 | MS.gene30768:CDS |
| TGTGGAGGCTGGTAATTTGG+AGG | 0.568460 | 3.1:-59893454 | None:intergenic |
| GTCCTAGACGATCTAAAAGT+AGG | 0.569257 | 3.1:+59898525 | MS.gene30768:CDS |
| CTTACAGGTAAGACCTGAAG+AGG | 0.569631 | 3.1:+59900562 | MS.gene30768:intron |
| CAGCCTGCTGCAGTAAATAG+TGG | 0.570492 | 3.1:+59893836 | MS.gene30768:intron |
| GCATAACCACTAGTAGCTGC+AGG | 0.571910 | 3.1:-59893430 | None:intergenic |
| GTTCAGAGCTCCACAGCGAA+TGG | 0.572983 | 3.1:+59892740 | MS.gene30768:CDS |
| CGCCAGATTCACCTGTTGAG+GGG | 0.582343 | 3.1:-59894092 | None:intergenic |
| ATGCCAGGCTGTCATGAAAG+AGG | 0.584265 | 3.1:+59895747 | MS.gene30768:CDS |
| CGGATACGCAAATCAAGCGC+CGG | 0.584612 | 3.1:+59893168 | MS.gene30768:CDS |
| AGCAAGGTTGGCATCTCCGT+GGG | 0.587369 | 3.1:-59903948 | None:intergenic |
| ACATAGCCACGCAAAGACTT+GGG | 0.587714 | 3.1:-59895679 | None:intergenic |
| AACTCCTATCATCAATGGCA+AGG | 0.587936 | 3.1:+59902391 | MS.gene30768:CDS |
| CAATATTGTGGATATGATTG+TGG | 0.593905 | 3.1:-59893472 | None:intergenic |
| AAAGACTTGGGAAACATACC+GGG | 0.594352 | 3.1:-59895667 | None:intergenic |
| AGGTATATGAAACTCACGCC+CGG | 0.595572 | 3.1:+59901034 | MS.gene30768:intron |
| ACGCAAATCAAGCGCCGGCG+TGG | 0.596791 | 3.1:+59893173 | MS.gene30768:CDS |
| AGTGGAAAACAAAGAGAGCA+AGG | 0.597172 | 3.1:+59899976 | MS.gene30768:CDS |
| CAGAAGACAATATCTTCTCA+AGG | 0.600815 | 3.1:+59894031 | MS.gene30768:CDS |
| CTAGACGATCTAAAAGTAGG+TGG | 0.601709 | 3.1:+59898528 | MS.gene30768:CDS |
| GTACAGTTGGCCGATATGAT+CGG | 0.605593 | 3.1:-59903436 | None:intergenic |
| GCGATACCTGCGCCTAACAT+CGG | 0.608145 | 3.1:+59900426 | MS.gene30768:CDS |
| GAACAGAAAATAATCACTCA+AGG | 0.611292 | 3.1:+59900254 | MS.gene30768:CDS |
| TCCGCCCATTGATTGTATTG+TGG | 0.611868 | 3.1:-59893304 | None:intergenic |
| CTCTGGCACAAATAAACTAG+AGG | 0.614360 | 3.1:-59903909 | None:intergenic |
| AACCCAAAGTAGATGAACTT+GGG | 0.614812 | 3.1:-59893381 | None:intergenic |
| ACGTAGGAAACGGGTACAGT+TGG | 0.615139 | 3.1:-59903449 | None:intergenic |
| ATGTTTCCCAAGTCTTTGCG+TGG | 0.615774 | 3.1:+59895673 | MS.gene30768:CDS |
| TTAGAATGGTTGAAAGCTCA+TGG | 0.616091 | 3.1:+59903554 | MS.gene30768:CDS |
| CATGATGATTACTGGAAACA+TGG | 0.617331 | 3.1:+59893863 | MS.gene30768:CDS |
| CTGGTGCCGATGTTAGGCGC+AGG | 0.618070 | 3.1:-59900432 | None:intergenic |
| ATATGAAACTCACGCCCGGT+TGG | 0.618391 | 3.1:+59901038 | MS.gene30768:CDS |
| GCATCCGGCATTGGGAAGAG+TGG | 0.619191 | 3.1:-59897119 | None:intergenic |
| TAATGGTTCAAAATTCCCAA+AGG | 0.619992 | 3.1:+59900603 | MS.gene30768:CDS |
| ACACAACCAATTAACAGTCA+AGG | 0.621344 | 3.1:+59900688 | MS.gene30768:CDS |
| TCGATACTAACCCATAAGGC+AGG | 0.621771 | 3.1:-59903299 | None:intergenic |
| GTGTATGCATTATAATCTTG+TGG | 0.624549 | 3.1:-59892893 | None:intergenic |
| ATAAGTGCTTGAATAACTTG+CGG | 0.624859 | 3.1:-59893098 | None:intergenic |
| ATAAGAGCTACTGGAATCTG+TGG | 0.625635 | 3.1:-59893245 | None:intergenic |
| CATGCTTATTCACAGCCTGT+AGG | 0.626283 | 3.1:+59893004 | MS.gene30768:CDS |
| CCCGGAGGAAGCGTTCAAGA+TGG | 0.628039 | 3.1:+59892815 | MS.gene30768:CDS |
| GCTGATTATCAGACTACTGG+AGG | 0.632419 | 3.1:+59893130 | MS.gene30768:CDS |
| AAAGATGGAGCACTTTGTAA+GGG | 0.633740 | 3.1:-59894115 | None:intergenic |
| AGAATAAATTCCATTCGCTG+TGG | 0.636759 | 3.1:-59892750 | None:intergenic |
| CCGGTTGGCACTGGAAGTTG+GGG | 0.638529 | 3.1:+59901053 | MS.gene30768:CDS |
| AGACCCAGTATTCTGAAAGG+AGG | 0.639972 | 3.1:-59893065 | None:intergenic |
| TAGACGATCTAAAAGTAGGT+GGG | 0.640865 | 3.1:+59898529 | MS.gene30768:CDS |
| TGGAAACTTGTACAACAGAA+GGG | 0.643768 | 3.1:+59900294 | MS.gene30768:CDS |
| CAGCAAGGTTGGCATCTCCG+TGG | 0.644377 | 3.1:-59903949 | None:intergenic |
| CAGAAGTCAGTTGTGCCCCA+GGG | 0.647530 | 3.1:+59893341 | MS.gene30768:CDS |
| ATTAGACCCAGTATTCTGAA+AGG | 0.648423 | 3.1:-59893068 | None:intergenic |
| GCCAGAGCCAGAAGATGCTG+TGG | 0.649747 | 3.1:+59903925 | MS.gene30768:CDS |
| TAAACACTCTTCCAAAGCAG+CGG | 0.651574 | 3.1:-59903534 | None:intergenic |
| AGCTGTTGAGGATATTGACT+GGG | 0.653712 | 3.1:+59900363 | MS.gene30768:CDS |
| GTATCATTACTTGTTGACAC+AGG | 0.654941 | 3.1:-59898587 | None:intergenic |
| GTATCATTACTTGTTGACAC+AGG | 0.654941 | 3.1:-59898650 | None:intergenic |
| TGACAACAATGGAGACATGA+TGG | 0.658840 | 3.1:+59903592 | MS.gene30768:CDS |
| GATATTCAAACCTGTAAAGG+CGG | 0.659423 | 3.1:-59893523 | None:intergenic |
| TATCGAGTAAAGCTCCCCAA+AGG | 0.663783 | 3.1:+59900044 | MS.gene30768:CDS |
| GTAACTTGTATACGGATGAG+AGG | 0.666117 | 3.1:-59893221 | None:intergenic |
| TAGGTGGGAGCCATTACCAG+AGG | 0.672885 | 3.1:+59898544 | MS.gene30768:CDS |
| GGAGGTTACCAAAACAGCAA+CGG | 0.673164 | 3.1:+59893148 | MS.gene30768:CDS |
| TCCTAGAACCTGAGATACGT+AGG | 0.679539 | 3.1:-59903465 | None:intergenic |
| CCTGCTGCAGTAAATAGTGG+TGG | 0.681233 | 3.1:+59893839 | MS.gene30768:CDS |
| ACAGGATGATGGTTAACCGG+CGG | 0.700654 | 3.1:-59898632 | None:intergenic |
| GCCACAATACAATCAATGGG+CGG | 0.709329 | 3.1:+59893303 | MS.gene30768:CDS |
| AGACAAGTTCTCTGTCCCTG+GGG | 0.709687 | 3.1:-59893356 | None:intergenic |
| TATTGTGGATATGATTGTGG+AGG | 0.718936 | 3.1:-59893469 | None:intergenic |
| TAACTGTCATTGTTCCACGC+CGG | 0.721249 | 3.1:-59893187 | None:intergenic |
| GTATTGTGGCTGATACTGCA+CGG | 0.734393 | 3.1:-59893290 | None:intergenic |
| TCTTGAACGCTTCCTCCGGG+CGG | 0.736187 | 3.1:-59892812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 59892707 | 59904003 | 59892707 | ID=MS.gene30768 |
| chr3.1 | mRNA | 59892707 | 59904003 | 59892707 | ID=MS.gene30768.t1;Parent=MS.gene30768 |
| chr3.1 | exon | 59892707 | 59893534 | 59892707 | ID=MS.gene30768.t1.exon1;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59892707 | 59893534 | 59892707 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59893839 | 59894333 | 59893839 | ID=MS.gene30768.t1.exon2;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59893839 | 59894333 | 59893839 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59895667 | 59895768 | 59895667 | ID=MS.gene30768.t1.exon3;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59895667 | 59895768 | 59895667 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59897062 | 59897159 | 59897062 | ID=MS.gene30768.t1.exon4;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59897062 | 59897159 | 59897062 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59898475 | 59898715 | 59898475 | ID=MS.gene30768.t1.exon5;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59898475 | 59898715 | 59898475 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59899971 | 59900465 | 59899971 | ID=MS.gene30768.t1.exon6;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59899971 | 59900465 | 59899971 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59900569 | 59900709 | 59900569 | ID=MS.gene30768.t1.exon7;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59900569 | 59900709 | 59900569 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59901036 | 59901095 | 59901036 | ID=MS.gene30768.t1.exon8;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59901036 | 59901095 | 59901036 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59902282 | 59902412 | 59902282 | ID=MS.gene30768.t1.exon9;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59902282 | 59902412 | 59902282 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59903177 | 59903310 | 59903177 | ID=MS.gene30768.t1.exon10;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59903177 | 59903310 | 59903177 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59903390 | 59903625 | 59903390 | ID=MS.gene30768.t1.exon11;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59903390 | 59903625 | 59903390 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| chr3.1 | exon | 59903902 | 59904003 | 59903902 | ID=MS.gene30768.t1.exon12;Parent=MS.gene30768.t1 |
| chr3.1 | CDS | 59903902 | 59904003 | 59903902 | ID=cds.MS.gene30768.t1;Parent=MS.gene30768.t1 |
| Gene Sequence |
| Protein sequence |
