AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051063


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051063.t1 MTR_8g022330 99.087 219 2 0 1 219 12 230 6.41e-163 449
MS.gene051063.t1 MTR_8g087310 30.198 202 109 7 21 211 135 315 3.58e-13 68.2
MS.gene051063.t1 MTR_8g087310 30.198 202 109 7 21 211 254 434 3.85e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051063.t1 AT1G17350 71.495 214 60 1 1 213 12 225 9.52e-119 337
MS.gene051063.t1 AT1G17350 71.495 214 60 1 1 213 12 225 9.52e-119 337
MS.gene051063.t1 AT1G17350 71.495 214 60 1 1 213 12 225 9.52e-119 337
MS.gene051063.t1 AT1G17350 71.495 214 60 1 1 213 12 225 9.52e-119 337
MS.gene051063.t1 AT1G17350 69.340 212 56 2 1 203 12 223 8.77e-110 315
MS.gene051063.t1 AT1G72420 67.442 215 68 2 1 213 12 226 8.26e-109 312
MS.gene051063.t1 AT1G72420 67.442 215 68 2 1 213 12 226 8.26e-109 312
MS.gene051063.t1 AT1G72420 67.464 209 66 2 7 213 7 215 2.04e-105 303
MS.gene051063.t1 AT1G72420 63.115 122 44 1 1 121 12 133 5.75e-52 166
MS.gene051063.t1 AT1G72420 63.115 122 44 1 1 121 12 133 1.19e-51 164
MS.gene051063.t1 AT1G72420 63.115 122 44 1 1 121 12 133 1.19e-51 164

Find 46 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTATTCTGATTCTGAATT+TGG 0.164131 8.3:+69463989 MS.gene051063:CDS
TGCAATATACCAGTTATCTT+TGG 0.216625 8.3:-69465283 None:intergenic
ACGATAGCTATGAAACTTAA+AGG 0.245721 8.3:+69465048 MS.gene051063:CDS
CAGATACCTGAATCTGAAAA+TGG 0.295053 8.3:+69464133 MS.gene051063:CDS
TGCAGATATACACGGAGAAT+TGG 0.328795 8.3:+69465205 MS.gene051063:intron
TTGATTTCAACAGCTATATC+TGG 0.331646 8.3:+69463887 MS.gene051063:intron
CAAAACCTATACTACATCAT+TGG 0.343817 8.3:-69467538 None:intergenic
GCAATATACCAGTTATCTTT+GGG 0.348274 8.3:-69465282 None:intergenic
TTGTGGAATGCGCTCCAAAA+AGG 0.350095 8.3:+69464237 MS.gene051063:CDS
TTTACGTGCCCAAAGATAAC+TGG 0.351126 8.3:+69465274 MS.gene051063:CDS
CCAAGCAAGAATTATCAAAA+TGG 0.360136 8.3:+69463963 MS.gene051063:CDS
ATTTCAGACTTGAACTTGAA+TGG 0.375010 8.3:+69467491 MS.gene051063:CDS
GGTGTCCCAGGTGCTAGATC+TGG 0.377828 8.3:+69467460 MS.gene051063:CDS
ATGAATCCATCACGTGTTCT+TGG 0.389127 8.3:+69467409 MS.gene051063:CDS
CATTGGGTTCTCACTTCTCA+TGG 0.392116 8.3:-69467521 None:intergenic
TCTGAAAATGGTAAAACTAC+TGG 0.430983 8.3:+69464145 MS.gene051063:CDS
CTCTGGGAATCTTTCTCTTG+AGG 0.435126 8.3:+69464174 MS.gene051063:CDS
TATTCTGATTCTGAATTTGG+AGG 0.441704 8.3:+69463992 MS.gene051063:CDS
AAAACCTATACTACATCATT+GGG 0.453436 8.3:-69467537 None:intergenic
AATGCCGAGGGTGGTGTCCC+AGG 0.459127 8.3:+69467448 MS.gene051063:CDS
GCAGATATACACGGAGAATT+GGG 0.459883 8.3:+69465206 MS.gene051063:intron
GTTTGATGGCTTCATTGACT+TGG 0.463757 8.3:+69465014 MS.gene051063:intron
CCTGGTCCAGATCTAGCACC+TGG 0.491978 8.3:-69467466 None:intergenic
TCAATGGATGCTACTAAGAA+AGG 0.500994 8.3:+69463805 None:intergenic
GCTATGAAACTTAAAGGAGA+TGG 0.505648 8.3:+69465054 MS.gene051063:CDS
GAGTTGTCCTCCATCTGTCC+AGG 0.525035 8.3:-69465237 None:intergenic
CTTTCTCTTGAGGTTACTCA+AGG 0.526391 8.3:+69464184 MS.gene051063:CDS
TAGCTCGATATGTACCTACT+TGG 0.540332 8.3:+69467356 MS.gene051063:CDS
GGTTAACTCACCTGGACAGA+TGG 0.543070 8.3:+69465227 MS.gene051063:CDS
AAGTGGAATATTAGTAGAGG+TGG 0.553563 8.3:+69464211 MS.gene051063:CDS
GCTAAGTGGAATATTAGTAG+AGG 0.567692 8.3:+69464208 MS.gene051063:CDS
GACAGATGGAGGACAACTCA+TGG 0.575304 8.3:+69465241 MS.gene051063:CDS
AGCACCTGGGACACCACCCT+CGG 0.576679 8.3:-69467452 None:intergenic
CCAGGTGCTAGATCTGGACC+AGG 0.581357 8.3:+69467466 MS.gene051063:CDS
GAGAATTGGGTTAACTCACC+TGG 0.591802 8.3:+69465219 MS.gene051063:CDS
AGGTTACTCAAGGTGCTAAG+TGG 0.593770 8.3:+69464194 MS.gene051063:CDS
CGATATGTACCTACTTGGAG+AGG 0.604855 8.3:+69467361 MS.gene051063:CDS
GACATGCCAAGAACACGTGA+TGG 0.606451 8.3:-69467415 None:intergenic
GTAGGTACATATCGAGCTAG+AGG 0.608047 8.3:-69467352 None:intergenic
AGATAACTGGTATATTGCAA+AGG 0.608700 8.3:+69465287 MS.gene051063:CDS
AGTTCAAGTCTGAAATCACC+TGG 0.640637 8.3:-69467484 None:intergenic
ATAACGTTCCCTCTCCAAGT+AGG 0.644498 8.3:-69467370 None:intergenic
TAACTCACCTGGACAGATGG+AGG 0.644910 8.3:+69465230 MS.gene051063:CDS
GATATGTACCTACTTGGAGA+GGG 0.669899 8.3:+69467362 MS.gene051063:CDS
GATTATGGTGCAGATATACA+CGG 0.690928 8.3:+69465197 MS.gene051063:intron
CTGGTCCAGATCTAGCACCT+GGG 0.695025 8.3:-69467465 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATCAATTTAATGAA+TGG + chr8.3:69466173-69466192 MS.gene051063:intron 10.0%
!!! TTATTTTTTGATATAGAAAT+AGG - chr8.3:69464361-69464380 None:intergenic 10.0%
!! TTTAAATAATCAATTCAAAC+AGG + chr8.3:69464522-69464541 MS.gene051063:intron 15.0%
!!! AAGTTGAATATATATTTTTC+AGG - chr8.3:69463938-69463957 None:intergenic 15.0%
!!! CAGAAAAAATATAGAATTTT+TGG + chr8.3:69465529-69465548 MS.gene051063:intron 15.0%
!!! TTAAAAAACACTATCATTTT+AGG - chr8.3:69466338-69466357 None:intergenic 15.0%
!!! TTGATTTTGAAGAAAAAAAA+GGG + chr8.3:69467046-69467065 MS.gene051063:intron 15.0%
!!! TTTGATTTTGAAGAAAAAAA+AGG + chr8.3:69467045-69467064 MS.gene051063:intron 15.0%
!! ACCAAATAATTTAAACTTTG+GGG - chr8.3:69466217-69466236 None:intergenic 20.0%
!! ATAACAAGTACAAAATCAAT+GGG - chr8.3:69466734-69466753 None:intergenic 20.0%
!! ATTGAATTGAATTGTATGAT+TGG + chr8.3:69464924-69464943 MS.gene051063:intron 20.0%
!! CACCAAATAATTTAAACTTT+GGG - chr8.3:69466218-69466237 None:intergenic 20.0%
!! TATAACAAGTACAAAATCAA+TGG - chr8.3:69466735-69466754 None:intergenic 20.0%
!! TCACCAAATAATTTAAACTT+TGG - chr8.3:69466219-69466238 None:intergenic 20.0%
!!! ACTTTGGTTAATTTAATTTC+TGG + chr8.3:69464045-69464064 MS.gene051063:intron 20.0%
!!! ATTTGGCATTTTAAAAGAAA+AGG - chr8.3:69465107-69465126 None:intergenic 20.0%
!!! ATTTTGCATTCAGATAAAAA+AGG - chr8.3:69465708-69465727 None:intergenic 20.0%
!!! CTTTGGTTAATTTAATTTCT+GGG + chr8.3:69464046-69464065 MS.gene051063:intron 20.0%
!!! TATTTTTGTCTATTTTGTTC+TGG + chr8.3:69466827-69466846 MS.gene051063:intron 20.0%
!!! TGATTTTGAAGAAAAAAAAG+GGG + chr8.3:69467047-69467066 MS.gene051063:intron 20.0%
!!! TTAAATTATTTGGTGAAATC+AGG + chr8.3:69466223-69466242 MS.gene051063:intron 20.0%
!!! TTGAATATATATTTTTCAGG+TGG - chr8.3:69463935-69463954 None:intergenic 20.0%
!!! TTTTTATAATAAGTCACGTT+TGG - chr8.3:69465598-69465617 None:intergenic 20.0%
! AAATTTCCTAGGATATCATT+TGG - chr8.3:69465124-69465143 None:intergenic 25.0%
! AATGAGATAGTATACATTTG+TGG - chr8.3:69465957-69465976 None:intergenic 25.0%
! AATGCAACAAATGAATCATA+AGG + chr8.3:69466366-69466385 MS.gene051063:intron 25.0%
! AATTCAATTCAATATGCACT+AGG - chr8.3:69464917-69464936 None:intergenic 25.0%
! AGCTAATAAGTCAATTCAAA+CGG + chr8.3:69464864-69464883 MS.gene051063:intron 25.0%
! ATTCAGATAAAAAAGGAAAC+GGG - chr8.3:69465701-69465720 None:intergenic 25.0%
! CAAGATAACTTATAGCTTAT+AGG - chr8.3:69464403-69464422 None:intergenic 25.0%
! CATTCAGATAAAAAAGGAAA+CGG - chr8.3:69465702-69465721 None:intergenic 25.0%
! CTAAAAGAATAATTGTTGCT+TGG + chr8.3:69467164-69467183 MS.gene051063:intron 25.0%
! CTTTACAAACAAGTTCAAAT+TGG - chr8.3:69466458-69466477 None:intergenic 25.0%
! TAAGCTAAATTTAGCTACAA+CGG + chr8.3:69466647-69466666 MS.gene051063:intron 25.0%
! TATCAAAATCTGCTATGTTA+TGG - chr8.3:69465414-69465433 None:intergenic 25.0%
! TATCTATTGAGTAAACACTT+GGG + chr8.3:69467017-69467036 MS.gene051063:intron 25.0%
! TATTGTAACTAGTTGGATTA+TGG + chr8.3:69465182-69465201 MS.gene051063:intron 25.0%
! TCAAATTGTTAATGTTGTTC+AGG + chr8.3:69464091-69464110 MS.gene051063:intron 25.0%
! TCCCCAAAGTTTAAATTATT+TGG + chr8.3:69466213-69466232 MS.gene051063:intron 25.0%
! TCTATGTATATGTAAGTGAA+GGG + chr8.3:69467206-69467225 MS.gene051063:intron 25.0%
! TCTATTTAACAATGAAGTTC+TGG + chr8.3:69465798-69465817 MS.gene051063:intron 25.0%
! TTATCTATTGAGTAAACACT+TGG + chr8.3:69467016-69467035 MS.gene051063:intron 25.0%
! TTCTATGTATATGTAAGTGA+AGG + chr8.3:69467205-69467224 MS.gene051063:intron 25.0%
! TTGTATTCTGATTCTGAATT+TGG + chr8.3:69463989-69464008 MS.gene051063:CDS 25.0%
! TTTCTCTATTAGGAAAATAG+CGG + chr8.3:69465466-69465485 MS.gene051063:intron 25.0%
!! ATAGCATTGAATTGTATGAA+TGG + chr8.3:69464587-69464606 MS.gene051063:intron 25.0%
!! ATGATAACCTGTAATTTTGT+AGG + chr8.3:69465866-69465885 MS.gene051063:intron 25.0%
!! ATTTTCCTAATAGAGAAACT+AGG - chr8.3:69465464-69465483 None:intergenic 25.0%
!! CAATTTGAACTTGTTTGTAA+AGG + chr8.3:69466456-69466475 MS.gene051063:intron 25.0%
!! TATGATTCATTTGTTGCATT+TGG - chr8.3:69466366-69466385 None:intergenic 25.0%
!! TGACTTATTAGCTTATCTAA+TGG - chr8.3:69464857-69464876 None:intergenic 25.0%
!!! AATATATATTTTTCAGGTGG+TGG - chr8.3:69463932-69463951 None:intergenic 25.0%
AAAATGCCAAATGATATCCT+AGG + chr8.3:69465115-69465134 MS.gene051063:intron 30.0%
AAACTAGAATCAAGAGTTTG+AGG + chr8.3:69466272-69466291 MS.gene051063:intron 30.0%
AAGCTAAATTTAGCTACAAC+GGG + chr8.3:69466648-69466667 MS.gene051063:intron 30.0%
AAGTTATCTTGTAGAGCTTA+TGG + chr8.3:69464412-69464431 MS.gene051063:intron 30.0%
AAGTTTGCAATGAAACCAAA+AGG + chr8.3:69466575-69466594 MS.gene051063:intron 30.0%
AATACGTCCTACAAAATTAC+AGG - chr8.3:69465876-69465895 None:intergenic 30.0%
ACGATAGCTATGAAACTTAA+AGG + chr8.3:69465048-69465067 MS.gene051063:CDS 30.0%
ACTATCCTAGTTTCTCTATT+AGG + chr8.3:69465456-69465475 MS.gene051063:intron 30.0%
ACTTCGATTATGCAAATTTC+TGG + chr8.3:69466150-69466169 MS.gene051063:intron 30.0%
AGATAACTGGTATATTGCAA+AGG + chr8.3:69465287-69465306 MS.gene051063:CDS 30.0%
AGCGAAGCTTACATATTAAA+AGG - chr8.3:69465673-69465692 None:intergenic 30.0%
AGGAAATACTATAAACGGAT+AGG + chr8.3:69467081-69467100 MS.gene051063:intron 30.0%
AGTCAACTATACACAAGAAA+AGG - chr8.3:69465732-69465751 None:intergenic 30.0%
ATATACATAGAAAGCCAACA+AGG - chr8.3:69467197-69467216 None:intergenic 30.0%
ATCTATTGAGTAAACACTTG+GGG + chr8.3:69467018-69467037 MS.gene051063:intron 30.0%
ATTTCAGACTTGAACTTGAA+TGG + chr8.3:69467491-69467510 MS.gene051063:CDS 30.0%
CAATATTGTCGTTGAACAAA+TGG - chr8.3:69464891-69464910 None:intergenic 30.0%
CATATCGATCATTACTAATC+AGG - chr8.3:69465343-69465362 None:intergenic 30.0%
CCAAGCAAGAATTATCAAAA+TGG + chr8.3:69463963-69463982 MS.gene051063:CDS 30.0%
GATATCCTAGGAAATTTAGA+GGG + chr8.3:69465127-69465146 MS.gene051063:intron 30.0%
GCAATATACCAGTTATCTTT+GGG - chr8.3:69465285-69465304 None:intergenic 30.0%
TAAATAGAAGATAGCATTGC+AGG - chr8.3:69465786-69465805 None:intergenic 30.0%
TATTCTGATTCTGAATTTGG+AGG + chr8.3:69463992-69464011 MS.gene051063:CDS 30.0%
TCAATATTACTAAAGAGCGA+CGG - chr8.3:69466693-69466712 None:intergenic 30.0%
TCTGAAAATGGTAAAACTAC+TGG + chr8.3:69464145-69464164 MS.gene051063:CDS 30.0%
TGACTTATTTCAATGACATG+CGG + chr8.3:69465747-69465766 MS.gene051063:intron 30.0%
TGATATCCTAGGAAATTTAG+AGG + chr8.3:69465126-69465145 MS.gene051063:intron 30.0%
TGCAATATACCAGTTATCTT+TGG - chr8.3:69465286-69465305 None:intergenic 30.0%
TGGTCAGGAAATACTATAAA+CGG + chr8.3:69467076-69467095 MS.gene051063:intron 30.0%
TTAAAAGAAAAGGACACTCA+CGG - chr8.3:69465097-69465116 None:intergenic 30.0%
TTAGCTTATCTAATGGCATA+AGG - chr8.3:69464850-69464869 None:intergenic 30.0%
TTCAGATAAAAAAGGAAACG+GGG - chr8.3:69465700-69465719 None:intergenic 30.0%
TTCTCTATTAGGAAAATAGC+GGG + chr8.3:69465467-69465486 MS.gene051063:intron 30.0%
TTGAGATTAAGGACTAGATA+AGG + chr8.3:69466028-69466047 MS.gene051063:intron 30.0%
TTGAGTGATTATAGTGTAAG+CGG + chr8.3:69464659-69464678 MS.gene051063:intron 30.0%
TTGATTTCAACAGCTATATC+TGG + chr8.3:69463887-69463906 MS.gene051063:intron 30.0%
TTGTTTGTAAAGGAGGTTAA+CGG + chr8.3:69466466-69466485 MS.gene051063:intron 30.0%
! AAAACTACTGGAATTTTCTC+TGG + chr8.3:69464157-69464176 MS.gene051063:CDS 30.0%
! AAACTACTGGAATTTTCTCT+GGG + chr8.3:69464158-69464177 MS.gene051063:CDS 30.0%
! AAATTTAGCTTAGTAGAGCT+AGG - chr8.3:69466639-69466658 None:intergenic 30.0%
! AGTTAAAAAAGCCACCTTTT+TGG - chr8.3:69464254-69464273 None:intergenic 30.0%
! CTACGTTTTGCAATTTAATC+AGG - chr8.3:69465987-69466006 None:intergenic 30.0%
! CTATCATTTTAGGCATGTAA+AGG - chr8.3:69466328-69466347 None:intergenic 30.0%
! GTTGCTAAAGTTTGAAACTT+TGG + chr8.3:69464029-69464048 MS.gene051063:intron 30.0%
! GTTTTACCATTTTCAGATTC+AGG - chr8.3:69464142-69464161 None:intergenic 30.0%
! TCAAAGACTTTAGTGTTGTT+TGG + chr8.3:69464273-69464292 MS.gene051063:intron 30.0%
! TTGCAAGTATTGTAACTAGT+TGG + chr8.3:69465175-69465194 MS.gene051063:intron 30.0%
! TTTGAACTTGTTTGTAAAGG+AGG + chr8.3:69466459-69466478 MS.gene051063:intron 30.0%
!! AGAAAAAAAAGGGGTTTTGA+TGG + chr8.3:69467056-69467075 MS.gene051063:intron 30.0%
!! CCATTTTGATAATTCTTGCT+TGG - chr8.3:69463966-69463985 None:intergenic 30.0%
!! TCTGTGTTTTTGTAGTTTGA+TGG + chr8.3:69465000-69465019 MS.gene051063:intron 30.0%
!! TTCTCATTTTTGTTCAACGA+CGG + chr8.3:69464954-69464973 MS.gene051063:intron 30.0%
AAGTGGAATATTAGTAGAGG+TGG + chr8.3:69464211-69464230 MS.gene051063:CDS 35.0%
AAGTTCGACAACAACATAGA+TGG + chr8.3:69464555-69464574 MS.gene051063:intron 35.0%
AATGATCGATATGTTCGACT+AGG + chr8.3:69465350-69465369 MS.gene051063:intron 35.0%
ACTATTGTAAAACCTTGCAG+TGG - chr8.3:69466095-69466114 None:intergenic 35.0%
AGCTTAAACCCATACTAGAT+CGG - chr8.3:69466869-69466888 None:intergenic 35.0%
CAAAAACACAGAATTGCGTA+AGG - chr8.3:69464992-69465011 None:intergenic 35.0%
CAGATACCTGAATCTGAAAA+TGG + chr8.3:69464133-69464152 MS.gene051063:CDS 35.0%
CATCACTTCAGTGCTTAATA+TGG - chr8.3:69467247-69467266 None:intergenic 35.0%
GATTATGGTGCAGATATACA+CGG + chr8.3:69465197-69465216 MS.gene051063:intron 35.0%
GCTAAGTGGAATATTAGTAG+AGG + chr8.3:69464208-69464227 MS.gene051063:CDS 35.0%
GCTATGAAACTTAAAGGAGA+TGG + chr8.3:69465054-69465073 MS.gene051063:CDS 35.0%
GTAAGCAGTAAGATGGAAAT+GGG - chr8.3:69465318-69465337 None:intergenic 35.0%
GTATATGTAAGTGAAGGGAT+GGG + chr8.3:69467211-69467230 MS.gene051063:intron 35.0%
TAAAGGACCAACTAAATTGC+AGG - chr8.3:69466311-69466330 None:intergenic 35.0%
TCAAACCCTCTAAATTTCCT+AGG - chr8.3:69465135-69465154 None:intergenic 35.0%
TCAGATAAAAAAGGAAACGG+GGG - chr8.3:69465699-69465718 None:intergenic 35.0%
TGTAAGCAGTAAGATGGAAA+TGG - chr8.3:69465319-69465338 None:intergenic 35.0%
TGTATATGTAAGTGAAGGGA+TGG + chr8.3:69467210-69467229 MS.gene051063:intron 35.0%
TGTTGTCGAACTTGAACAAA+GGG - chr8.3:69464548-69464567 None:intergenic 35.0%
TTGTTGTCGAACTTGAACAA+AGG - chr8.3:69464549-69464568 None:intergenic 35.0%
! ATGGGTTTCTTCATGTTTTC+TGG - chr8.3:69466549-69466568 None:intergenic 35.0%
! ATTTAAACTTTGGGGAGAGT+TGG - chr8.3:69466209-69466228 None:intergenic 35.0%
! CTCAATGATTTTGCAGTGTT+TGG + chr8.3:69464625-69464644 MS.gene051063:intron 35.0%
! CTCACAAGTTTTTATGCTAG+TGG + chr8.3:69464494-69464513 MS.gene051063:intron 35.0%
! GGGTTTGAAGTTTCATTTCA+TGG + chr8.3:69465147-69465166 MS.gene051063:intron 35.0%
! TCTGTGACATTGTTTGAGTT+GGG - chr8.3:69466526-69466545 None:intergenic 35.0%
!! ATTAGTAGAGGTGGATTTTG+TGG + chr8.3:69464220-69464239 MS.gene051063:CDS 35.0%
!! TAGTGTTGAGGTTTTTGTTG+CGG - chr8.3:69465440-69465459 None:intergenic 35.0%
AAGGAGATGTGAGACTCTAT+AGG - chr8.3:69464831-69464850 None:intergenic 40.0%
AGAGCTAGGTTTCAACTCAT+CGG - chr8.3:69466625-69466644 None:intergenic 40.0%
AGGAGATGTGAGACTCTATA+GGG - chr8.3:69464830-69464849 None:intergenic 40.0%
ATGAATCCATCACGTGTTCT+TGG + chr8.3:69467409-69467428 MS.gene051063:CDS 40.0%
ATTGTGGTCCGATCTAGTAT+GGG + chr8.3:69466858-69466877 MS.gene051063:intron 40.0%
CAAAACGTAGTTACCTTGAC+GGG + chr8.3:69465997-69466016 MS.gene051063:intron 40.0%
CATTGCAAACTTGCAACGAT+GGG - chr8.3:69466567-69466586 None:intergenic 40.0%
CTAAATTTAGCTACAACGGG+AGG + chr8.3:69466651-69466670 MS.gene051063:intron 40.0%
CTTTCTCTTGAGGTTACTCA+AGG + chr8.3:69464184-69464203 MS.gene051063:CDS 40.0%
GAAATCAGGTTAACTCGCTT+AGG + chr8.3:69466237-69466256 MS.gene051063:intron 40.0%
GAACAAGCCTGCAATTTAGT+TGG + chr8.3:69466301-69466320 MS.gene051063:intron 40.0%
GAGAAACTAGGATAGTGTTG+AGG - chr8.3:69465452-69465471 None:intergenic 40.0%
GATATGTACCTACTTGGAGA+GGG + chr8.3:69467362-69467381 MS.gene051063:CDS 40.0%
GATCTAGTATGGGTTTAAGC+TGG + chr8.3:69466868-69466887 MS.gene051063:intron 40.0%
GCAAAACGTAGTTACCTTGA+CGG + chr8.3:69465996-69466015 MS.gene051063:intron 40.0%
GCAGATATACACGGAGAATT+GGG + chr8.3:69465206-69465225 MS.gene051063:intron 40.0%
GTCTGTGACATTGTTTGAGT+TGG - chr8.3:69466527-69466546 None:intergenic 40.0%
TAGCTCGATATGTACCTACT+TGG + chr8.3:69467356-69467375 MS.gene051063:CDS 40.0%
TATTGTGGTCCGATCTAGTA+TGG + chr8.3:69466857-69466876 MS.gene051063:intron 40.0%
TCATTGCAAACTTGCAACGA+TGG - chr8.3:69466568-69466587 None:intergenic 40.0%
TGCAGATATACACGGAGAAT+TGG + chr8.3:69465205-69465224 MS.gene051063:intron 40.0%
TGTTCTGGTCTGTTCTATTG+TGG + chr8.3:69466842-69466861 MS.gene051063:intron 40.0%
TTGTAAAACCTTGCAGTGGA+TGG - chr8.3:69466091-69466110 None:intergenic 40.0%
TTTACGTGCCCAAAGATAAC+TGG + chr8.3:69465274-69465293 MS.gene051063:CDS 40.0%
! AGTTCAAGTCTGAAATCACC+TGG - chr8.3:69467487-69467506 None:intergenic 40.0%
! GTAATTTTCCATCCACTGCA+AGG + chr8.3:69466080-69466099 MS.gene051063:intron 40.0%
! GTTTGATGGCTTCATTGACT+TGG + chr8.3:69465014-69465033 MS.gene051063:intron 40.0%
! TCAGGTTGTAAGCAGTAAGA+TGG - chr8.3:69465325-69465344 None:intergenic 40.0%
! TCTTTTTCTGTCAATGCCGA+GGG + chr8.3:69467436-69467455 MS.gene051063:CDS 40.0%
!! AAAAAGGGGTTTTGATGGTC+AGG + chr8.3:69467061-69467080 MS.gene051063:intron 40.0%
!! GGGCTTGAACTTTGAGATTA+AGG + chr8.3:69466017-69466036 MS.gene051063:intron 40.0%
!! TTGTTTGAGTTGGGACTATG+AGG - chr8.3:69466517-69466536 None:intergenic 40.0%
AGGTTTCAACTCATCGGAGT+TGG - chr8.3:69466619-69466638 None:intergenic 45.0%
AGTGAAGGGATGGGTATCAT+TGG + chr8.3:69467220-69467239 MS.gene051063:intron 45.0%
ATAACGTTCCCTCTCCAAGT+AGG - chr8.3:69467373-69467392 None:intergenic 45.0%
CATATCGAGCTAGAGGAATC+TGG - chr8.3:69467348-69467367 None:intergenic 45.0%
CATTGGGTTCTCACTTCTCA+TGG - chr8.3:69467524-69467543 None:intergenic 45.0%
CGATATGTACCTACTTGGAG+AGG + chr8.3:69467361-69467380 MS.gene051063:CDS 45.0%
GAGAATTGGGTTAACTCACC+TGG + chr8.3:69465219-69465238 MS.gene051063:CDS 45.0%
GGAGATGTGAGACTCTATAG+GGG - chr8.3:69464829-69464848 None:intergenic 45.0%
GGTTTCAACTCATCGGAGTT+GGG - chr8.3:69466618-69466637 None:intergenic 45.0%
GTAGGTACATATCGAGCTAG+AGG - chr8.3:69467355-69467374 None:intergenic 45.0%
GTATGGGTTTAAGCTGGATC+TGG + chr8.3:69466874-69466893 MS.gene051063:intron 45.0%
GTTGGGTTCATTCATCTGGT+TGG - chr8.3:69466601-69466620 None:intergenic 45.0%
TTGTGGAATGCGCTCCAAAA+AGG + chr8.3:69464237-69464256 MS.gene051063:CDS 45.0%
! AGGTTACTCAAGGTGCTAAG+TGG + chr8.3:69464194-69464213 MS.gene051063:CDS 45.0%
! CTCTGGGAATCTTTCTCTTG+AGG + chr8.3:69464174-69464193 MS.gene051063:CDS 45.0%
! GTCTTTTTCTGTCAATGCCG+AGG + chr8.3:69467435-69467454 MS.gene051063:CDS 45.0%
!!! CATTCATCTGGTTGGCCTTT+TGG - chr8.3:69466593-69466612 None:intergenic 45.0%
!!! TGCTTGGTTTTGTGCCTTGT+TGG + chr8.3:69467180-69467199 MS.gene051063:intron 45.0%
ACACCACCACAAATCACCTG+AGG - chr8.3:69466900-69466919 None:intergenic 50.0%
ACTAAAGAGCGACGGATGAC+TGG - chr8.3:69466685-69466704 None:intergenic 50.0%
ACTAGCTGACGCAGTTGCAA+TGG + chr8.3:69465506-69465525 MS.gene051063:intron 50.0%
ATCTGGCCTCAGGTGATTTG+TGG + chr8.3:69466891-69466910 MS.gene051063:intron 50.0%
CGGAGTTGGGTTCATTCATC+TGG - chr8.3:69466605-69466624 None:intergenic 50.0%
CTCAAAGTTCAAGCCCGTCA+AGG - chr8.3:69466013-69466032 None:intergenic 50.0%
GACAGATGGAGGACAACTCA+TGG + chr8.3:69465241-69465260 MS.gene051063:CDS 50.0%
GACATGCCAAGAACACGTGA+TGG - chr8.3:69467418-69467437 None:intergenic 50.0%
GGTTAACTCACCTGGACAGA+TGG + chr8.3:69465227-69465246 MS.gene051063:CDS 50.0%
TAACTCACCTGGACAGATGG+AGG + chr8.3:69465230-69465249 MS.gene051063:CDS 50.0%
TGGAATGCGCTCCAAAAAGG+TGG + chr8.3:69464240-69464259 MS.gene051063:intron 50.0%
TTTAAGCTGGATCTGGCCTC+AGG + chr8.3:69466881-69466900 MS.gene051063:intron 50.0%
! AGGTGATTTGTGGTGGTGTG+GGG + chr8.3:69466901-69466920 MS.gene051063:intron 50.0%
! CAGGTGATTTGTGGTGGTGT+GGG + chr8.3:69466900-69466919 MS.gene051063:intron 50.0%
! TCAGGTGATTTGTGGTGGTG+TGG + chr8.3:69466899-69466918 MS.gene051063:intron 50.0%
! TTTTCTGTCAATGCCGAGGG+TGG + chr8.3:69467439-69467458 MS.gene051063:CDS 50.0%
CTGCGTCAGCTAGTAGAGAC+TGG - chr8.3:69465500-69465519 None:intergenic 55.0%
CTGGTCCAGATCTAGCACCT+GGG - chr8.3:69467468-69467487 None:intergenic 55.0%
GAGTTGTCCTCCATCTGTCC+AGG - chr8.3:69465240-69465259 None:intergenic 55.0%
! TGATTTGTGGTGGTGTGGGG+TGG + chr8.3:69466904-69466923 MS.gene051063:intron 55.0%
! TGGCCTCAGGTGATTTGTGG+TGG + chr8.3:69466894-69466913 MS.gene051063:intron 55.0%
AGAGCGACGGATGACTGGAC+TGG - chr8.3:69466680-69466699 None:intergenic 60.0%
CCAGGTGCTAGATCTGGACC+AGG + chr8.3:69467466-69467485 MS.gene051063:CDS 60.0%
CCTGGTCCAGATCTAGCACC+TGG - chr8.3:69467469-69467488 None:intergenic 60.0%
GAGCGACGGATGACTGGACT+GGG - chr8.3:69466679-69466698 None:intergenic 60.0%
GGTGTCCCAGGTGCTAGATC+TGG + chr8.3:69467460-69467479 MS.gene051063:CDS 60.0%
AATGCCGAGGGTGGTGTCCC+AGG + chr8.3:69467448-69467467 MS.gene051063:CDS 65.0%
AGCACCTGGGACACCACCCT+CGG - chr8.3:69467455-69467474 None:intergenic 65.0%
TGGTGTGGGGTGGTGCGGTA+CGG + chr8.3:69466914-69466933 MS.gene051063:intron 65.0%
! TGTGGTGGTGTGGGGTGGTG+CGG + chr8.3:69466909-69466928 MS.gene051063:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 69463808 69467549 69463808 ID=MS.gene051063
chr8.3 mRNA 69463808 69467549 69463808 ID=MS.gene051063.t1;Parent=MS.gene051063
chr8.3 exon 69463808 69463826 69463808 ID=MS.gene051063.t1.exon1;Parent=MS.gene051063.t1
chr8.3 CDS 69463808 69463826 69463808 ID=cds.MS.gene051063.t1;Parent=MS.gene051063.t1
chr8.3 exon 69463900 69464013 69463900 ID=MS.gene051063.t1.exon2;Parent=MS.gene051063.t1
chr8.3 CDS 69463900 69464013 69463900 ID=cds.MS.gene051063.t1;Parent=MS.gene051063.t1
chr8.3 exon 69464113 69464258 69464113 ID=MS.gene051063.t1.exon3;Parent=MS.gene051063.t1
chr8.3 CDS 69464113 69464258 69464113 ID=cds.MS.gene051063.t1;Parent=MS.gene051063.t1
chr8.3 exon 69465015 69465095 69465015 ID=MS.gene051063.t1.exon4;Parent=MS.gene051063.t1
chr8.3 CDS 69465015 69465095 69465015 ID=cds.MS.gene051063.t1;Parent=MS.gene051063.t1
chr8.3 exon 69465210 69465308 69465210 ID=MS.gene051063.t1.exon5;Parent=MS.gene051063.t1
chr8.3 CDS 69465210 69465308 69465210 ID=cds.MS.gene051063.t1;Parent=MS.gene051063.t1
chr8.3 exon 69467349 69467549 69467349 ID=MS.gene051063.t1.exon6;Parent=MS.gene051063.t1
chr8.3 CDS 69467349 69467549 69467349 ID=cds.MS.gene051063.t1;Parent=MS.gene051063.t1
Gene Sequence

>MS.gene051063

ATGGATGCTACTAAGAAAGGTATTAATTTTTCAATATTCACTCATTCTCATATTCAAATTGTTTCATAAATTGAAGATTTTGATTTCAACAGCTATATCTGGTAGCTTTGATGATTTGATGCCACCACCTGAAAAATATATATTCAACTTCAATTCCAAGCAAGAATTATCAAAATGGCATTTGTATTCTGATTCTGAATTTGGAGGTACATTATTTTTTTGTTGCTAAAGTTTGAAACTTTGGTTAATTTAATTTCTGGGTTTTTAATTTTTTTTTTCTTTTTCAAATTGTTAATGTTGTTCAGGTTTGTCATCTGCATCATTGCAGATACCTGAATCTGAAAATGGTAAAACTACTGGAATTTTCTCTGGGAATCTTTCTCTTGAGGTTACTCAAGGTGCTAAGTGGAATATTAGTAGAGGTGGATTTTGTGGAATGCGCTCCAAAAAGGTGGCTTTTTTAACTCAAAGACTTTAGTGTTGTTTGGATATATAGCTTAATTAAGTGCTTAGAGTATAAACATTGATGATTACATTTACATATGTATAACCTATTTCTATATCAAAAAATAAAATAAAGTTAAATTGTTTTCCTATAAGCTATAAGTTATCTTGTAGAGCTTATGGAAATAAGCTGAAAACAAACAGATTATAGTAAGTTGTTTTCATAAGCTCTCTCAAACAGTCTCACAAGTTTTTATGCTAGTGGATAAGTTTAAATAATCAATTCAAACAGGCCCTTTGTTCAAGTTCGACAACAACATAGATGGCTAGTGCATATAGCATTGAATTGTATGAATGGTGTCTGATTCTTTCTCTCAATGATTTTGCAGTGTTTGGAAACAACTTAGTTGAGTGATTATAGTGTAAGCGGTTATCATATAATCACTTATGTATAACATATTTCTATAACTAAAGATAAATGAATTCAAGTTGTATTCATAAAGCTATCTTGAAGAGCTAATTGAAATAAGTTGAAAACAGCTTATGAACATGTCTTAAGTTGTTTTCATAAGCTCCCCTATAGAGTCTCACATCTCCTTATGCCATTAGATAAGCTAATAAGTCAATTCAAACGGACCATTTGTTCAACGACAATATTGATGCCTAGTGCATATTGAATTGAATTGTATGATTGGTATCTGATTCTCATTTTTGTTCAACGACGGACAATATTTATGCCTTACGCAATTCTGTGTTTTTGTAGTTTGATGGCTTCATTGACTTGGATTCATATGATACGATAGCTATGAAACTTAAAGGAGATGGAAGAAGTTATATATCTACCGTGAGTGTCCTTTTCTTTTAAAATGCCAAATGATATCCTAGGAAATTTAGAGGGTTTGAAGTTTCATTTCATGGTAGTCTTGCAAGTATTGTAACTAGTTGGATTATGGTGCAGATATACACGGAGAATTGGGTTAACTCACCTGGACAGATGGAGGACAACTCATGGCAATCATTTGTTTACGTGCCCAAAGATAACTGGTATATTGCAAAGGCAAGTCCCATTTCCATCTTACTGCTTACAACCTGATTAGTAATGATCGATATGTTCGACTAGGCTTTCTGTTTGTGTTGTCAGTGCTGTCAAATAGCATCACCATAACATAGCAGATTTTGATAACTCCGCAACAAAAACCTCAACACTATCCTAGTTTCTCTATTAGGAAAATAGCGGGCACTATTCCAGTCTCTACTAGCTGACGCAGTTGCAATGGCAGAAAAAATATAGAATTTTTGGTGTTTTAAAATAATAAAATAAAACTGTGAAGTCTGCGTATGTGCCAAACGTGACTTATTATAAAAATAAACAAACTGTAGAGTTAGTGATTACTCATATATTCTCTATATTGCGTGAACCTTTTAATATGTAAGCTTCGCTCTACCCCCGTTTCCTTTTTTATCTGAATGCAAAATGCCTTTTCTTGTGTATAGTTGACTTATTTCAATGACATGCGGCTTCTTCTGTTTGCCTGCAATGCTATCTTCTATTTAACAATGAAGTTCTGGCGTTTCGCTATTTTCTGCAATCTGCTATTGATAGCGCTGTGTGTTATGATAACCTGTAATTTTGTAGGACGTATTCTCAAATAATGTTTGAGTGACTAATACTATATTGTGCTGCTTGTGACTGTTTTTTCTGCCACAAATGTATACTATCTCATTAGTTATGCCTGATTAAATTGCAAAACGTAGTTACCTTGACGGGCTTGAACTTTGAGATTAAGGACTAGATAAGGTGCATTGAAAGCGCATGCACATATCTCATGTAATTTTCCATCCACTGCAAGGTTTTACAATAGTTATAGCTTGTGTCAAGAAATAGCGAGCTGTTTAGCACTTCGATTATGCAAATTTCTGGAATATTATCAATTTAATGAATGGTTGTTATGAACCAACTCTCCCCAAAGTTTAAATTATTTGGTGAAATCAGGTTAACTCGCTTAGGTTTTTTCTGTGTAAACTAGAATCAAGAGTTTGAGGACAATTGAACAAGCCTGCAATTTAGTTGGTCCTTTACATGCCTAAAATGATAGTGTTTTTTAAAATAACCAAATGCAACAAATGAATCATAAGGCTTCATAGTGCACAAAACATCAATCTTATAGTTGTAACACTCGACTACATAGATGCATTTAACATTCCAATTTGAACTTGTTTGTAAAGGAGGTTAACGGTGTTCTATTGTGTCTCAACTCTCAACCTCATAGTCCCAACTCAAACAATGTCACAGACCAGAAAACATGAAGAAACCCATCGTTGCAAGTTTGCAATGAAACCAAAAGGCCAACCAGATGAATGAACCCAACTCCGATGAGTTGAAACCTAGCTCTACTAAGCTAAATTTAGCTACAACGGGAGGAACCCAGTCCAGTCATCCGTCGCTCTTTAGTAATATTGATTGTGATTTGTCAATTTGCCCATTGATTTTGTACTTGTTATACTTATTCGTGCAATGAATTGTGAACTTATCTTGTGATTTGTGAATTCGTTCATCAAATTTTAATTGTGATGCTATTTTTGTCTATTTTGTTCTGGTCTGTTCTATTGTGGTCCGATCTAGTATGGGTTTAAGCTGGATCTGGCCTCAGGTGATTTGTGGTGGTGTGGGGTGGTGCGGTACGGTATTAAATTAGAATGTTGATTATTTGCTAGACACTATTAAATTGAGTTTACATGCTATGATGCATTTTTTAAACATTCTTTATCTATTGAGTAAACACTTGGGGTTCGTTTGATTTTGAAGAAAAAAAAGGGGTTTTGATGGTCAGGAAATACTATAAACGGATAGGATTGCTTCACTCTGATGTTTACTATTTGAAATTGAAACTGAGTGCACAATATATATGAAACTAAAAGAATAATTGTTGCTTGGTTTTGTGCCTTGTTGGCTTTCTATGTATATGTAAGTGAAGGGATGGGTATCATTGGTCCATATTAAGCACTGAAGTGATGATACTTGCTCATTTAGTTACATTATTTTCTATCGTGAATTTCAATGCTTTGCATGTGCTTAGTTATTTCATCGATTGACCAGATTCCTCTAGCTCGATATGTACCTACTTGGAGAGGGAACGTTATAGATGCAGAAATTGAAATGAATCCATCACGTGTTCTTGGCATGTCTTTTTCTGTCAATGCCGAGGGTGGTGTCCCAGGTGCTAGATCTGGACCAGGTGATTTCAGACTTGAACTTGAATGGATCAAAGCCATGAGAAGTGAGAACCCAATGATGTAG

Protein sequence

>MS.gene051063.t1

MDATKKAISGSFDDLMPPPEKYIFNFNSKQELSKWHLYSDSEFGGLSSASLQIPESENGKTTGIFSGNLSLEVTQGAKWNISRGGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRSYISTIYTENWVNSPGQMEDNSWQSFVYVPKDNWYIAKIPLARYVPTWRGNVIDAEIEMNPSRVLGMSFSVNAEGGVPGARSGPGDFRLELEWIKAMRSENPMM