Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30801.t1 | XP_003620724.3 | 95.9 | 341 | 11 | 1 | 35 | 372 | 9 | 349 | 8.70E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30801.t1 | Q9FLH8 | 77.4 | 323 | 73 | 0 | 44 | 366 | 16 | 338 | 9.5e-142 | 504.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30801.t1 | A0A396HJ77 | 95.9 | 341 | 11 | 1 | 35 | 372 | 9 | 349 | 6.2e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30801 | MS.gene052011 | PPI |
| MS.gene30801 | MS.gene98726 | PPI |
| MS.gene30801 | MS.gene46881 | PPI |
| MS.gene30801 | MS.gene003877 | PPI |
| MS.gene30801 | MS.gene28335 | PPI |
| MS.gene85276 | MS.gene30801 | PPI |
| MS.gene30801 | MS.gene056386 | PPI |
| MS.gene032177 | MS.gene30801 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30801.t1 | MTR_6g089480 | 96.825 | 315 | 10 | 0 | 58 | 372 | 1 | 315 | 0.0 | 622 |
| MS.gene30801.t1 | MTR_1g101950 | 86.751 | 317 | 42 | 0 | 49 | 365 | 21 | 337 | 0.0 | 570 |
| MS.gene30801.t1 | MTR_6g089480 | 96.337 | 273 | 10 | 0 | 58 | 330 | 1 | 273 | 0.0 | 538 |
| MS.gene30801.t1 | MTR_6g089480 | 97.407 | 270 | 7 | 0 | 58 | 327 | 1 | 270 | 0.0 | 537 |
| MS.gene30801.t1 | MTR_5g079460 | 76.101 | 318 | 75 | 1 | 49 | 366 | 65 | 381 | 3.04e-169 | 478 |
| MS.gene30801.t1 | MTR_1g076850 | 64.557 | 316 | 110 | 2 | 51 | 366 | 8 | 321 | 5.73e-152 | 431 |
| MS.gene30801.t1 | MTR_7g075860 | 65.094 | 318 | 109 | 1 | 51 | 366 | 41 | 358 | 4.12e-150 | 428 |
| MS.gene30801.t1 | MTR_1g069745 | 71.429 | 294 | 72 | 2 | 72 | 365 | 4 | 285 | 1.90e-147 | 419 |
| MS.gene30801.t1 | MTR_2g098950 | 62.893 | 318 | 116 | 2 | 49 | 366 | 12 | 327 | 6.61e-147 | 419 |
| MS.gene30801.t1 | MTR_1g069490 | 66.254 | 323 | 83 | 2 | 43 | 365 | 102 | 398 | 1.00e-146 | 421 |
| MS.gene30801.t1 | MTR_4g067310 | 63.240 | 321 | 116 | 2 | 49 | 369 | 13 | 331 | 5.36e-146 | 416 |
| MS.gene30801.t1 | MTR_1g057810 | 64.907 | 322 | 107 | 2 | 43 | 364 | 245 | 560 | 6.43e-137 | 402 |
| MS.gene30801.t1 | MTR_1g105150 | 61.801 | 322 | 103 | 3 | 43 | 364 | 245 | 546 | 1.87e-124 | 369 |
| MS.gene30801.t1 | MTR_1g054730 | 57.875 | 273 | 84 | 2 | 93 | 365 | 146 | 387 | 1.86e-99 | 300 |
| MS.gene30801.t1 | MTR_5g044990 | 30.000 | 370 | 216 | 7 | 39 | 368 | 192 | 558 | 8.89e-48 | 171 |
| MS.gene30801.t1 | MTR_0046s0180 | 70.874 | 103 | 30 | 0 | 263 | 365 | 7 | 109 | 2.41e-47 | 157 |
| MS.gene30801.t1 | MTR_4g019165 | 31.063 | 367 | 207 | 7 | 51 | 372 | 93 | 458 | 7.24e-46 | 163 |
| MS.gene30801.t1 | MTR_2g072830 | 26.298 | 289 | 189 | 7 | 82 | 366 | 89 | 357 | 2.01e-13 | 71.2 |
| MS.gene30801.t1 | MTR_1g070375 | 25.321 | 312 | 206 | 8 | 71 | 366 | 108 | 408 | 1.67e-12 | 68.9 |
| MS.gene30801.t1 | MTR_3g112040 | 26.357 | 258 | 174 | 7 | 72 | 325 | 73 | 318 | 1.62e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30801.t1 | AT5G51830 | 77.399 | 323 | 73 | 0 | 44 | 366 | 16 | 338 | 0.0 | 522 |
| MS.gene30801.t1 | AT5G51830 | 77.399 | 323 | 73 | 0 | 44 | 366 | 16 | 338 | 0.0 | 522 |
| MS.gene30801.t1 | AT1G66430 | 71.386 | 332 | 94 | 1 | 40 | 371 | 54 | 384 | 1.28e-171 | 483 |
| MS.gene30801.t1 | AT4G10260 | 67.203 | 311 | 100 | 2 | 48 | 358 | 3 | 311 | 7.76e-154 | 436 |
| MS.gene30801.t1 | AT3G59480 | 64.038 | 317 | 112 | 2 | 50 | 366 | 9 | 323 | 5.39e-148 | 421 |
| MS.gene30801.t1 | AT2G31390 | 62.975 | 316 | 115 | 2 | 51 | 366 | 9 | 322 | 8.59e-145 | 413 |
| MS.gene30801.t1 | AT1G06020 | 61.950 | 318 | 119 | 1 | 51 | 368 | 10 | 325 | 3.12e-144 | 412 |
| MS.gene30801.t1 | AT1G06030 | 61.562 | 320 | 121 | 2 | 47 | 366 | 7 | 324 | 1.32e-143 | 410 |
| MS.gene30801.t1 | AT3G54090 | 33.515 | 367 | 197 | 8 | 51 | 372 | 103 | 467 | 2.65e-53 | 183 |
| MS.gene30801.t1 | AT1G69200 | 33.333 | 288 | 172 | 4 | 77 | 345 | 246 | 532 | 3.44e-47 | 169 |
| MS.gene30801.t1 | AT1G50390 | 47.953 | 171 | 58 | 1 | 196 | 366 | 1 | 140 | 9.70e-47 | 156 |
Find 79 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGCCAATCTTAAATT+TGG | 0.189545 | 6.4:+38946736 | None:intergenic |
| CAAATTTAAGATTGGCATTA+TGG | 0.194373 | 6.4:-38946735 | MS.gene30801:CDS |
| AATTGTTACTGAAGGGTCTA+AGG | 0.261268 | 6.4:-38946402 | MS.gene30801:CDS |
| GGAATGGCATAATGAGTATA+TGG | 0.266779 | 6.4:-38946693 | MS.gene30801:CDS |
| GTTCACTGGTTGTTTCCTTT+GGG | 0.302611 | 6.4:-38947672 | MS.gene30801:CDS |
| TTTAGGATTGAAATCGTATA+TGG | 0.303315 | 6.4:-38947833 | MS.gene30801:intron |
| TTAAACTAATTGAGCCAAAA+TGG | 0.312735 | 6.4:+38946836 | None:intergenic |
| TCTTATATTACAGCTGCTTC+TGG | 0.321751 | 6.4:+38944487 | None:intergenic |
| AGTTCACTGGTTGTTTCCTT+TGG | 0.322009 | 6.4:-38947673 | MS.gene30801:CDS |
| CCAGTGAACTTGTTTCCTTA+TGG | 0.328368 | 6.4:+38947686 | None:intergenic |
| TACTAGCGACGCCAACATTT+AGG | 0.346554 | 6.4:-38947850 | MS.gene30801:CDS |
| TGCAAAACAGCTTCCTTTGT+AGG | 0.347798 | 6.4:+38944517 | None:intergenic |
| ACCTCTTTCTGTAACTGTTA+TGG | 0.347968 | 6.4:+38944555 | None:intergenic |
| CAGAACAATGTCGATACTTC+TGG | 0.361492 | 6.4:-38947104 | MS.gene30801:CDS |
| GAGAATGCAACCAGAACTTT+TGG | 0.364359 | 6.4:+38946768 | None:intergenic |
| ATGAAGATTGCCAAAAGTTC+TGG | 0.375368 | 6.4:-38946778 | MS.gene30801:CDS |
| GCATATCAGCACTTGGATTC+CGG | 0.387276 | 6.4:+38947000 | None:intergenic |
| TAGGTTGGAGCAGATGAATT+TGG | 0.387315 | 6.4:-38947152 | MS.gene30801:CDS |
| GGATCAAGCCGATGTCATTA+AGG | 0.392693 | 6.4:-38946671 | MS.gene30801:intron |
| GGCCGTCTGCCGAGGCTGCT+CGG | 0.399158 | 6.4:-38946714 | MS.gene30801:CDS |
| CCAGCACCGGTTGTGTCAAC+AGG | 0.401097 | 6.4:+38945562 | None:intergenic |
| AAAACAACATCATCATCATT+AGG | 0.412207 | 6.4:+38946458 | None:intergenic |
| ATACGATCCAAATTTAAGAT+TGG | 0.426939 | 6.4:-38946743 | MS.gene30801:CDS |
| TGCTGTTGGTATATCTAGAT+TGG | 0.434341 | 6.4:-38947554 | MS.gene30801:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.450276 | 6.4:-38945544 | MS.gene30801:CDS |
| TTCATAGTGTCGTCAGTAAG+AGG | 0.456334 | 6.4:+38947911 | None:intergenic |
| GCTGTTGGTATATCTAGATT+GGG | 0.464108 | 6.4:-38947553 | MS.gene30801:CDS |
| CTGTGCAGGAATTTCGAGGC+AGG | 0.465166 | 6.4:-38945606 | MS.gene30801:intron |
| GTTAAACCTGTTGACACAAC+CGG | 0.483410 | 6.4:-38945568 | MS.gene30801:CDS |
| GAATGGCATAATGAGTATAT+GGG | 0.488190 | 6.4:-38946692 | MS.gene30801:CDS |
| AAACTCTTAATTGTTACTGA+AGG | 0.493747 | 6.4:-38946410 | MS.gene30801:CDS |
| GAATTTCGAGGCAGGGTTGG+AGG | 0.497205 | 6.4:-38945598 | MS.gene30801:CDS |
| TTCCGAGCAGCCTCGGCAGA+CGG | 0.505848 | 6.4:+38946712 | None:intergenic |
| CCAGGAGATTTCTTGAAAGC+CGG | 0.511009 | 6.4:+38947595 | None:intergenic |
| AGTGTCGCTCGCCGAGGCAC+CGG | 0.511077 | 6.4:-38947614 | MS.gene30801:CDS |
| TCTTAGAAAAGAAGACCATA+AGG | 0.516761 | 6.4:-38947701 | MS.gene30801:CDS |
| TCTGCCGAGGCTGCTCGGAA+TGG | 0.518189 | 6.4:-38946709 | MS.gene30801:CDS |
| CCGGCTTTCAAGAAATCTCC+TGG | 0.521432 | 6.4:-38947595 | MS.gene30801:CDS |
| ACGATTTCAATCCTAAATGT+TGG | 0.522096 | 6.4:+38947839 | None:intergenic |
| TTCACTGGTTGTTTCCTTTG+GGG | 0.525662 | 6.4:-38947671 | MS.gene30801:CDS |
| GCTTCCTTTGTAGGAAGTGA+AGG | 0.529815 | 6.4:+38944526 | None:intergenic |
| GCCATAACAGTTACAGAAAG+AGG | 0.530881 | 6.4:-38944556 | MS.gene30801:CDS |
| AACTCTTAATTGTTACTGAA+GGG | 0.532047 | 6.4:-38946409 | MS.gene30801:CDS |
| AGCTAATGCAGTCCTTGCAT+TGG | 0.532620 | 6.4:+38947067 | None:intergenic |
| ATTGTTACTGAAGGGTCTAA+GGG | 0.532919 | 6.4:-38946401 | MS.gene30801:CDS |
| GGCATTATGGCCGTCTGCCG+AGG | 0.533060 | 6.4:-38946722 | MS.gene30801:CDS |
| AACAAATGCATCACCAGCAC+CGG | 0.534469 | 6.4:+38945549 | None:intergenic |
| CAGGAATTTCGAGGCAGGGT+TGG | 0.538929 | 6.4:-38945601 | MS.gene30801:CDS |
| AGATATACCAACAGCAACAT+TGG | 0.540241 | 6.4:+38947561 | None:intergenic |
| CCTGTTGACACAACCGGTGC+TGG | 0.540265 | 6.4:-38945562 | MS.gene30801:CDS |
| TGATAGAGATCTCTTAAAGA+AGG | 0.540398 | 6.4:-38946958 | MS.gene30801:intron |
| TTTCTTGAAAGCCGGTGCCT+CGG | 0.540957 | 6.4:+38947603 | None:intergenic |
| TATGCCATTCCGAGCAGCCT+CGG | 0.547132 | 6.4:+38946705 | None:intergenic |
| TTTCTTTACCTTAATGACAT+CGG | 0.550305 | 6.4:+38946663 | None:intergenic |
| CCATAAGGAAACAAGTTCAC+TGG | 0.556670 | 6.4:-38947686 | MS.gene30801:CDS |
| ATTTCTGTGCAGGAATTTCG+AGG | 0.557516 | 6.4:-38945610 | MS.gene30801:intron |
| ATACCAACAGCAACATTGGC+AGG | 0.561076 | 6.4:+38947565 | None:intergenic |
| GCTCCTGCCAATGTTGCTGT+TGG | 0.566054 | 6.4:-38947568 | MS.gene30801:CDS |
| GTCTATCAACATTTCCCCAA+AGG | 0.569388 | 6.4:+38947657 | None:intergenic |
| TGAAGAAGCATATCAGCACT+TGG | 0.569500 | 6.4:+38946993 | None:intergenic |
| CAAGAACTCACGCTCACCGT+CGG | 0.572605 | 6.4:+38947028 | None:intergenic |
| AGCGACACTCCTCCCACAGT+TGG | 0.578152 | 6.4:+38947628 | None:intergenic |
| AATTCCTTCACTTCCTACAA+AGG | 0.581630 | 6.4:-38944530 | MS.gene30801:CDS |
| TGTGCAGGAATTTCGAGGCA+GGG | 0.593911 | 6.4:-38945605 | MS.gene30801:intron |
| GTTGGTATATCTAGATTGGG+AGG | 0.595607 | 6.4:-38947550 | MS.gene30801:CDS |
| ACATTGGCAGGAGCTCCACC+AGG | 0.606207 | 6.4:+38947577 | None:intergenic |
| TGAGGTTTGATGCCAATGCA+AGG | 0.607359 | 6.4:-38947079 | MS.gene30801:CDS |
| ATAGACTTTGTGCCAACTGT+GGG | 0.616321 | 6.4:-38947640 | MS.gene30801:CDS |
| AGATGAATTTGGTTACATGT+TGG | 0.618988 | 6.4:-38947141 | MS.gene30801:CDS |
| GACTTTGTGCCAACTGTGGG+AGG | 0.621437 | 6.4:-38947637 | MS.gene30801:CDS |
| GATAGACTTTGTGCCAACTG+TGG | 0.624305 | 6.4:-38947641 | MS.gene30801:CDS |
| CATGTATATACAGATAAGTG+AGG | 0.626485 | 6.4:-38946513 | MS.gene30801:intron |
| TTTGTCACACTTAGATCCGA+CGG | 0.633560 | 6.4:-38947044 | MS.gene30801:CDS |
| ATGTCGATACTTCTGGCATG+AGG | 0.638705 | 6.4:-38947097 | MS.gene30801:CDS |
| GGGAGGAGTGTCGCTCGCCG+AGG | 0.650456 | 6.4:-38947620 | MS.gene30801:CDS |
| GCTTTCAAGAAATCTCCTGG+TGG | 0.652256 | 6.4:-38947592 | MS.gene30801:CDS |
| GCAATGTGTGCTGATTTGCA+TGG | 0.668568 | 6.4:+38946805 | None:intergenic |
| GTATATACAGATAAGTGAGG+AGG | 0.677503 | 6.4:-38946510 | MS.gene30801:intron |
| GGGTTGTAGATATTACACAA+AGG | 0.751034 | 6.4:-38946381 | MS.gene30801:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATCTTTTTTTTTTG+TGG | + | chr6.4:38947022-38947041 | None:intergenic | 10.0% |
| !! | TAGTAAAAAATTATTGTAAC+CGG | - | chr6.4:38947119-38947138 | MS.gene30801:CDS | 15.0% |
| !!! | AAAAGAGAATATTATTTTAC+TGG | - | chr6.4:38947184-38947203 | MS.gene30801:intron | 15.0% |
| !!! | GAGATTATTTTTTATACAAA+TGG | - | chr6.4:38947372-38947391 | MS.gene30801:intron | 15.0% |
| !!! | GTTACAATAATTTTTTACTA+AGG | + | chr6.4:38947119-38947138 | None:intergenic | 15.0% |
| !! | AACCTAATACACAAATTATA+AGG | + | chr6.4:38945237-38945256 | None:intergenic | 20.0% |
| !! | AAGTTTATGTTTATCCAAAT+TGG | - | chr6.4:38946462-38946481 | MS.gene30801:CDS | 20.0% |
| !! | ACATCATATACAAATTGATA+TGG | + | chr6.4:38946056-38946075 | None:intergenic | 20.0% |
| !! | AGTAAAAAATTATTGTAACC+GGG | - | chr6.4:38947120-38947139 | MS.gene30801:CDS | 20.0% |
| !! | ATGCAAATAATTGAATGTAA+TGG | - | chr6.4:38946099-38946118 | MS.gene30801:intron | 20.0% |
| !! | CAAAATCTAAATTAAACCAT+AGG | + | chr6.4:38945515-38945534 | None:intergenic | 20.0% |
| !! | TATTACTAATAACACCAATT+TGG | + | chr6.4:38946479-38946498 | None:intergenic | 20.0% |
| !! | TTATGGAATTATAGTCTATT+TGG | - | chr6.4:38946501-38946520 | MS.gene30801:CDS | 20.0% |
| !! | TTTGTTTATTTCATGAAATG+TGG | - | chr6.4:38945482-38945501 | MS.gene30801:intron | 20.0% |
| !!! | ATAATATTTTTACTGGTTTC+TGG | - | chr6.4:38947304-38947323 | MS.gene30801:intron | 20.0% |
| !!! | ATTATATATATTTTCTTGGC+AGG | - | chr6.4:38947777-38947796 | MS.gene30801:intron | 20.0% |
| !!! | GTGTTATTAGTAATAAGTTA+TGG | - | chr6.4:38946484-38946503 | MS.gene30801:CDS | 20.0% |
| !!! | TAATATTTTTACTGGTTTCT+GGG | - | chr6.4:38947305-38947324 | MS.gene30801:intron | 20.0% |
| !!! | TTATAATTTGTGTATTAGGT+TGG | - | chr6.4:38945236-38945255 | MS.gene30801:intron | 20.0% |
| !!! | TTCCTTATAATTTGTGTATT+AGG | - | chr6.4:38945232-38945251 | MS.gene30801:intron | 20.0% |
| !!! | TTTATCTTTTTTTTTTGTGG+TGG | + | chr6.4:38947019-38947038 | None:intergenic | 20.0% |
| ! | AAAACAACATCATCATCATT+AGG | + | chr6.4:38945948-38945967 | None:intergenic | 25.0% |
| ! | AAACAAACCTGAAAAATACT+CGG | + | chr6.4:38946910-38946929 | None:intergenic | 25.0% |
| ! | AAACATGAACAAAATCTTGA+AGG | + | chr6.4:38944983-38945002 | None:intergenic | 25.0% |
| ! | AAACTCTTAATTGTTACTGA+AGG | - | chr6.4:38945993-38946012 | MS.gene30801:intron | 25.0% |
| ! | AAATTATACACATGATGTAG+TGG | - | chr6.4:38945760-38945779 | MS.gene30801:intron | 25.0% |
| ! | AACTCTTAATTGTTACTGAA+GGG | - | chr6.4:38945994-38946013 | MS.gene30801:intron | 25.0% |
| ! | AACTTATTTAAACGCACATA+TGG | + | chr6.4:38946447-38946466 | None:intergenic | 25.0% |
| ! | ACTTATTTAAACGCACATAT+GGG | + | chr6.4:38946446-38946465 | None:intergenic | 25.0% |
| ! | AGAGATAAAGGAACTAAAAT+TGG | - | chr6.4:38947350-38947369 | MS.gene30801:intron | 25.0% |
| ! | ATCAAATGACAAAAGAAAAG+TGG | + | chr6.4:38945080-38945099 | None:intergenic | 25.0% |
| ! | CATAATGCCAATCTTAAATT+TGG | + | chr6.4:38945670-38945689 | None:intergenic | 25.0% |
| ! | GTAAAAAATTATTGTAACCG+GGG | - | chr6.4:38947121-38947140 | MS.gene30801:CDS | 25.0% |
| ! | GTTATCAGATCTTATAACAA+AGG | - | chr6.4:38946204-38946223 | MS.gene30801:intron | 25.0% |
| ! | TACATGAAAAATACAACATC+AGG | + | chr6.4:38945876-38945895 | None:intergenic | 25.0% |
| ! | TTAAACTAATTGAGCCAAAA+TGG | + | chr6.4:38945570-38945589 | None:intergenic | 25.0% |
| ! | TTGATTCATGACTTAAAACT+AGG | - | chr6.4:38945157-38945176 | MS.gene30801:intron | 25.0% |
| ! | TTGTATACCATTGTTTATAC+TGG | - | chr6.4:38944643-38944662 | MS.gene30801:intron | 25.0% |
| ! | TTTCTTTACCTTAATGACAT+CGG | + | chr6.4:38945743-38945762 | None:intergenic | 25.0% |
| !! | ATACGATCCAAATTTAAGAT+TGG | - | chr6.4:38945660-38945679 | MS.gene30801:intron | 25.0% |
| !! | CAAATTTAAGATTGGCATTA+TGG | - | chr6.4:38945668-38945687 | MS.gene30801:intron | 25.0% |
| !! | CTTATCATAAAGTGTTTATG+TGG | + | chr6.4:38946708-38946727 | None:intergenic | 25.0% |
| !! | TTGTATTTTGCAAATGTATG+TGG | - | chr6.4:38947823-38947842 | MS.gene30801:intron | 25.0% |
| !! | TTTAGATTGAAAGGTATGAT+CGG | + | chr6.4:38946166-38946185 | None:intergenic | 25.0% |
| !! | TTTAGGATTGAAATCGTATA+TGG | - | chr6.4:38944570-38944589 | MS.gene30801:CDS | 25.0% |
| !!! | AAATTATCATTTGCTGTTCA+GGG | - | chr6.4:38947399-38947418 | MS.gene30801:intron | 25.0% |
| !!! | GATGATAACATTGATTTTTC+AGG | - | chr6.4:38945534-38945553 | MS.gene30801:CDS | 25.0% |
| !!! | TAAATTATCATTTGCTGTTC+AGG | - | chr6.4:38947398-38947417 | MS.gene30801:intron | 25.0% |
| !!! | TTTTTTCTAGTGAGCTTAAT+CGG | - | chr6.4:38945803-38945822 | MS.gene30801:intron | 25.0% |
| AACAAACCTGAAAAATACTC+GGG | + | chr6.4:38946909-38946928 | None:intergenic | 30.0% | |
| AAGATCTGATAACTCATAGT+AGG | + | chr6.4:38946197-38946216 | None:intergenic | 30.0% | |
| AATTTGGCACCACAATTATT+AGG | + | chr6.4:38946776-38946795 | None:intergenic | 30.0% | |
| ACGATTTCAATCCTAAATGT+TGG | + | chr6.4:38944567-38944586 | None:intergenic | 30.0% | |
| AGATGAATTTGGTTACATGT+TGG | - | chr6.4:38945262-38945281 | MS.gene30801:intron | 30.0% | |
| ATGACTTAAAACTAGGTCTT+TGG | - | chr6.4:38945164-38945183 | MS.gene30801:intron | 30.0% | |
| ATTTGTCGTTGTGATGTATA+AGG | - | chr6.4:38947681-38947700 | MS.gene30801:CDS | 30.0% | |
| CATGTATATACAGATAAGTG+AGG | - | chr6.4:38945890-38945909 | MS.gene30801:intron | 30.0% | |
| GAATGGCATAATGAGTATAT+GGG | - | chr6.4:38945711-38945730 | MS.gene30801:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr6.4:38946974-38946993 | MS.gene30801:CDS | 30.0% | |
| GCTTTAACCAGTATAAACAA+TGG | + | chr6.4:38944653-38944672 | None:intergenic | 30.0% | |
| TCTTAGAAAAGAAGACCATA+AGG | - | chr6.4:38944702-38944721 | MS.gene30801:intron | 30.0% | |
| TGATAGAGATCTCTTAAAGA+AGG | - | chr6.4:38945445-38945464 | MS.gene30801:intron | 30.0% | |
| TTATACATCACAACGACAAA+TGG | + | chr6.4:38947682-38947701 | None:intergenic | 30.0% | |
| TTTGTCGTTGTGATGTATAA+GGG | - | chr6.4:38947682-38947701 | MS.gene30801:CDS | 30.0% | |
| ! | TATTCATGGTTTTTAAACCC+CGG | + | chr6.4:38947141-38947160 | None:intergenic | 30.0% |
| !! | GAGATTACATTTTTGACTGA+AGG | - | chr6.4:38945915-38945934 | MS.gene30801:intron | 30.0% |
| !! | GCTATTTTCATAAGCTATCT+TGG | + | chr6.4:38946629-38946648 | None:intergenic | 30.0% |
| AATTCCTTCACTTCCTACAA+AGG | - | chr6.4:38947873-38947892 | MS.gene30801:CDS | 35.0% | |
| AATTGTTACTGAAGGGTCTA+AGG | - | chr6.4:38946001-38946020 | MS.gene30801:intron | 35.0% | |
| ACCTCTTTCTGTAACTGTTA+TGG | + | chr6.4:38947851-38947870 | None:intergenic | 35.0% | |
| AGATATACCAACAGCAACAT+TGG | + | chr6.4:38944845-38944864 | None:intergenic | 35.0% | |
| AGTTTATGACTACTGACGTA+CGG | - | chr6.4:38946267-38946286 | MS.gene30801:intron | 35.0% | |
| ATGAAGATTGCCAAAAGTTC+TGG | - | chr6.4:38945625-38945644 | MS.gene30801:intron | 35.0% | |
| ATTGTTACTGAAGGGTCTAA+GGG | - | chr6.4:38946002-38946021 | MS.gene30801:intron | 35.0% | |
| CAAACATGGCCTAATAATTG+TGG | - | chr6.4:38946764-38946783 | MS.gene30801:CDS | 35.0% | |
| CACAATTATTAGGCCATGTT+TGG | + | chr6.4:38946766-38946785 | None:intergenic | 35.0% | |
| CAGGTATCTACAACCTTATA+AGG | + | chr6.4:38946299-38946318 | None:intergenic | 35.0% | |
| CGAGGACAGTAAAATATTCA+TGG | + | chr6.4:38947155-38947174 | None:intergenic | 35.0% | |
| GAAATTCCTGCACAGAAATT+TGG | + | chr6.4:38946792-38946811 | None:intergenic | 35.0% | |
| GACTGACACTTTAGATTGAA+AGG | + | chr6.4:38946175-38946194 | None:intergenic | 35.0% | |
| GATCTTCTTACTGATCTCTT+TGG | - | chr6.4:38947216-38947235 | MS.gene30801:intron | 35.0% | |
| GCATACATTCATGTACAAGT+GGG | + | chr6.4:38947598-38947617 | None:intergenic | 35.0% | |
| GCTAATCCAAACAACATCTT+AGG | + | chr6.4:38946232-38946251 | None:intergenic | 35.0% | |
| GCTGAAGGAAATAGAGATAA+AGG | - | chr6.4:38947338-38947357 | MS.gene30801:intron | 35.0% | |
| GCTGTTGGTATATCTAGATT+GGG | - | chr6.4:38944850-38944869 | MS.gene30801:intron | 35.0% | |
| GGAATGGCATAATGAGTATA+TGG | - | chr6.4:38945710-38945729 | MS.gene30801:intron | 35.0% | |
| GGGTTGTAGATATTACACAA+AGG | - | chr6.4:38946022-38946041 | MS.gene30801:intron | 35.0% | |
| GTATATACAGATAAGTGAGG+AGG | - | chr6.4:38945893-38945912 | MS.gene30801:intron | 35.0% | |
| GTTTCAGGGAAAGTTAAATG+AGG | - | chr6.4:38946318-38946337 | MS.gene30801:intron | 35.0% | |
| TAACCTATGAAACACTGACA+CGG | + | chr6.4:38944605-38944624 | None:intergenic | 35.0% | |
| TGAGCAAATACAGAGAGATA+AGG | + | chr6.4:38947051-38947070 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | - | chr6.4:38946979-38946998 | MS.gene30801:CDS | 35.0% | |
| TGCATACATTCATGTACAAG+TGG | + | chr6.4:38947599-38947618 | None:intergenic | 35.0% | |
| TGCTGTTGGTATATCTAGAT+TGG | - | chr6.4:38944849-38944868 | MS.gene30801:intron | 35.0% | |
| TTAAGCTGTCTATCCAAACA+TGG | - | chr6.4:38946750-38946769 | MS.gene30801:CDS | 35.0% | |
| ! | CAGGCTACAATTTTCCATTT+TGG | - | chr6.4:38945553-38945572 | MS.gene30801:CDS | 35.0% |
| ! | CATTTAACTTTCCCTGAAAC+AGG | + | chr6.4:38946318-38946337 | None:intergenic | 35.0% |
| ! | TTCTCTTTTTCTTTTCGACG+AGG | + | chr6.4:38947173-38947192 | None:intergenic | 35.0% |
| !! | AATGTAATGGACATGTGTCA+GGG | - | chr6.4:38946112-38946131 | MS.gene30801:intron | 35.0% |
| !! | TTCATCTGCTTTTATAGGCA+AGG | - | chr6.4:38944876-38944895 | MS.gene30801:intron | 35.0% |
| !!! | CTTTTTTTTTTGTGGTGGCT+GGG | + | chr6.4:38947014-38947033 | None:intergenic | 35.0% |
| !!! | TCTTTTTTTTTTGTGGTGGC+TGG | + | chr6.4:38947015-38947034 | None:intergenic | 35.0% |
| AGGTTGTAGATACCTGTTTC+AGG | - | chr6.4:38946303-38946322 | MS.gene30801:intron | 40.0% | |
| ATACCGTGTCAGTGTTTCAT+AGG | - | chr6.4:38944599-38944618 | MS.gene30801:CDS | 40.0% | |
| ATAGACTTTGTGCCAACTGT+GGG | - | chr6.4:38944763-38944782 | MS.gene30801:intron | 40.0% | |
| ATTTCTGTGCAGGAATTTCG+AGG | - | chr6.4:38946793-38946812 | MS.gene30801:CDS | 40.0% | |
| CAGAACAATGTCGATACTTC+TGG | - | chr6.4:38945299-38945318 | MS.gene30801:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr6.4:38946981-38947000 | MS.gene30801:CDS | 40.0% | |
| CCATAAGGAAACAAGTTCAC+TGG | - | chr6.4:38944717-38944736 | MS.gene30801:intron | 40.0% | |
| CGTACGGAAAAGTCCTTATA+AGG | - | chr6.4:38946283-38946302 | MS.gene30801:intron | 40.0% | |
| GAAATGTGGTTCAAGACCTA+TGG | - | chr6.4:38945496-38945515 | MS.gene30801:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr6.4:38946980-38946999 | MS.gene30801:CDS | 40.0% | |
| GCCATAACAGTTACAGAAAG+AGG | - | chr6.4:38947847-38947866 | MS.gene30801:CDS | 40.0% | |
| GGTTGTAGATACCTGTTTCA+GGG | - | chr6.4:38946304-38946323 | MS.gene30801:intron | 40.0% | |
| GTCTATCAACATTTCCCCAA+AGG | + | chr6.4:38944749-38944768 | None:intergenic | 40.0% | |
| GTTAAACCTGTTGACACAAC+CGG | - | chr6.4:38946835-38946854 | MS.gene30801:CDS | 40.0% | |
| GTTGGTATATCTAGATTGGG+AGG | - | chr6.4:38944853-38944872 | MS.gene30801:intron | 40.0% | |
| TGCAAAACAGCTTCCTTTGT+AGG | + | chr6.4:38947889-38947908 | None:intergenic | 40.0% | |
| TTAAACGCACATATGGGACA+AGG | + | chr6.4:38946440-38946459 | None:intergenic | 40.0% | |
| TTCATAGTGTCGTCAGTAAG+AGG | + | chr6.4:38944495-38944514 | None:intergenic | 40.0% | |
| TTTGTCACACTTAGATCCGA+CGG | - | chr6.4:38945359-38945378 | MS.gene30801:intron | 40.0% | |
| ! | AAGGTGCCTAAGATGTTGTT+TGG | - | chr6.4:38946223-38946242 | MS.gene30801:intron | 40.0% |
| ! | ACGAGTAAATGCGTGTCATT+TGG | - | chr6.4:38947455-38947474 | MS.gene30801:intron | 40.0% |
| ! | AGTTCACTGGTTGTTTCCTT+TGG | - | chr6.4:38944730-38944749 | MS.gene30801:intron | 40.0% |
| ! | CCAGTGAACTTGTTTCCTTA+TGG | + | chr6.4:38944720-38944739 | None:intergenic | 40.0% |
| ! | GAGAATGCAACCAGAACTTT+TGG | + | chr6.4:38945638-38945657 | None:intergenic | 40.0% |
| ! | GTTCACTGGTTGTTTCCTTT+GGG | - | chr6.4:38944731-38944750 | MS.gene30801:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | - | chr6.4:38945251-38945270 | MS.gene30801:intron | 40.0% |
| ! | TGAAGAAGCATATCAGCACT+TGG | + | chr6.4:38945413-38945432 | None:intergenic | 40.0% |
| ! | TTCACTGGTTGTTTCCTTTG+GGG | - | chr6.4:38944732-38944751 | MS.gene30801:intron | 40.0% |
| ! | TTCTGACCCGAGTATTTTTC+AGG | - | chr6.4:38946900-38946919 | MS.gene30801:intron | 40.0% |
| !! | GAATGTAATGGACATGTGTC+AGG | - | chr6.4:38946111-38946130 | MS.gene30801:intron | 40.0% |
| !! | GGAGGTTCATCTGCTTTTAT+AGG | - | chr6.4:38944871-38944890 | MS.gene30801:intron | 40.0% |
| !!! | AGCGTGAGTTCTTGTTTTTC+CGG | - | chr6.4:38945384-38945403 | MS.gene30801:intron | 40.0% |
| AACAAATGCATCACCAGCAC+CGG | + | chr6.4:38946857-38946876 | None:intergenic | 45.0% | |
| AGCTAATGCAGTCCTTGCAT+TGG | + | chr6.4:38945339-38945358 | None:intergenic | 45.0% | |
| ATACCAACAGCAACATTGGC+AGG | + | chr6.4:38944841-38944860 | None:intergenic | 45.0% | |
| ATGTCGATACTTCTGGCATG+AGG | - | chr6.4:38945306-38945325 | MS.gene30801:intron | 45.0% | |
| CAAGCAACGTCTTCAACACA+AGG | + | chr6.4:38947246-38947265 | None:intergenic | 45.0% | |
| CCAGGAGATTTCTTGAAAGC+CGG | + | chr6.4:38944811-38944830 | None:intergenic | 45.0% | |
| CTGGGATGAATTCTTGCTGA+AGG | - | chr6.4:38947323-38947342 | MS.gene30801:intron | 45.0% | |
| GATAGACTTTGTGCCAACTG+TGG | - | chr6.4:38944762-38944781 | MS.gene30801:intron | 45.0% | |
| GCATATCAGCACTTGGATTC+CGG | + | chr6.4:38945406-38945425 | None:intergenic | 45.0% | |
| GCTTCCTTTGTAGGAAGTGA+AGG | + | chr6.4:38947880-38947899 | None:intergenic | 45.0% | |
| GCTTTCAAGAAATCTCCTGG+TGG | - | chr6.4:38944811-38944830 | MS.gene30801:intron | 45.0% | |
| GGATCAAGCCGATGTCATTA+AGG | - | chr6.4:38945732-38945751 | MS.gene30801:intron | 45.0% | |
| TACCAACTGAGCTAAGCTCA+CGG | + | chr6.4:38946952-38946971 | None:intergenic | 45.0% | |
| TACTAGCGACGCCAACATTT+AGG | - | chr6.4:38944553-38944572 | MS.gene30801:CDS | 45.0% | |
| TGAGGTTTGATGCCAATGCA+AGG | - | chr6.4:38945324-38945343 | MS.gene30801:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr6.4:38946859-38946878 | MS.gene30801:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr6.4:38946952-38946971 | MS.gene30801:intron | 45.0% |
| !! | GCAATGTGTGCTGATTTGCA+TGG | + | chr6.4:38945601-38945620 | None:intergenic | 45.0% |
| !!! | AAAAAAAATAATATTTTTAC+TGG | - | chr6.4:38947297-38947316 | MS.gene30801:intron | 5.0% |
| !!! | TTATATTATATATATTTTCT+TGG | - | chr6.4:38947773-38947792 | MS.gene30801:intron | 5.0% |
| ACCAACTGAGCTAAGCTCAC+GGG | + | chr6.4:38946951-38946970 | None:intergenic | 50.0% | |
| CCGGCTTTCAAGAAATCTCC+TGG | - | chr6.4:38944808-38944827 | MS.gene30801:intron | 50.0% | |
| TGTGCAGGAATTTCGAGGCA+GGG | - | chr6.4:38946798-38946817 | MS.gene30801:CDS | 50.0% | |
| TTTCTTGAAAGCCGGTGCCT+CGG | + | chr6.4:38944803-38944822 | None:intergenic | 50.0% | |
| ! | GTGGTGCCAAATTTCTGTGC+AGG | - | chr6.4:38946783-38946802 | MS.gene30801:CDS | 50.0% |
| CAAGAACTCACGCTCACCGT+CGG | + | chr6.4:38945378-38945397 | None:intergenic | 55.0% | |
| CAGGAATTTCGAGGCAGGGT+TGG | - | chr6.4:38946802-38946821 | MS.gene30801:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | + | chr6.4:38946950-38946969 | None:intergenic | 55.0% | |
| CTGTGCAGGAATTTCGAGGC+AGG | - | chr6.4:38946797-38946816 | MS.gene30801:CDS | 55.0% | |
| GAATTTCGAGGCAGGGTTGG+AGG | - | chr6.4:38946805-38946824 | MS.gene30801:CDS | 55.0% | |
| GACTTTGTGCCAACTGTGGG+AGG | - | chr6.4:38944766-38944785 | MS.gene30801:intron | 55.0% | |
| GCTCCTGCCAATGTTGCTGT+TGG | - | chr6.4:38944835-38944854 | MS.gene30801:intron | 55.0% | |
| TATGCCATTCCGAGCAGCCT+CGG | + | chr6.4:38945701-38945720 | None:intergenic | 55.0% | |
| ACATTGGCAGGAGCTCCACC+AGG | + | chr6.4:38944829-38944848 | None:intergenic | 60.0% | |
| AGCGACACTCCTCCCACAGT+TGG | + | chr6.4:38944778-38944797 | None:intergenic | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+TGG | - | chr6.4:38946947-38946966 | MS.gene30801:intron | 60.0% | |
| CCTGTTGACACAACCGGTGC+TGG | - | chr6.4:38946841-38946860 | MS.gene30801:CDS | 60.0% | |
| GTGCAGTGTCCGACACGACA+CGG | + | chr6.4:38946144-38946163 | None:intergenic | 60.0% | |
| !! | CCAGCACCGGTTGTGTCAAC+AGG | + | chr6.4:38946844-38946863 | None:intergenic | 60.0% |
| GGCATTATGGCCGTCTGCCG+AGG | - | chr6.4:38945681-38945700 | MS.gene30801:intron | 65.0% | |
| GGGTCAGTGCCGTGTCGTGT+CGG | - | chr6.4:38946132-38946151 | MS.gene30801:intron | 65.0% | |
| GGTGGCTGGGATTCGAACCC+CGG | + | chr6.4:38947001-38947020 | None:intergenic | 65.0% | |
| TCTGCCGAGGCTGCTCGGAA+TGG | - | chr6.4:38945694-38945713 | MS.gene30801:intron | 65.0% | |
| TTCCGAGCAGCCTCGGCAGA+CGG | + | chr6.4:38945694-38945713 | None:intergenic | 65.0% | |
| ! | AGTGTCGCTCGCCGAGGCAC+CGG | - | chr6.4:38944789-38944808 | MS.gene30801:intron | 70.0% |
| GGCCGTCTGCCGAGGCTGCT+CGG | - | chr6.4:38945689-38945708 | MS.gene30801:intron | 75.0% | |
| !! | GGGAGGAGTGTCGCTCGCCG+AGG | - | chr6.4:38944783-38944802 | MS.gene30801:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 38944489 | 38947936 | 38944489 | ID=MS.gene30801 |
| chr6.4 | mRNA | 38944489 | 38947936 | 38944489 | ID=MS.gene30801.t1;Parent=MS.gene30801 |
| chr6.4 | exon | 38947834 | 38947936 | 38947834 | ID=MS.gene30801.t1.exon1;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38947834 | 38947936 | 38947834 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| chr6.4 | exon | 38947528 | 38947736 | 38947528 | ID=MS.gene30801.t1.exon2;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38947528 | 38947736 | 38947528 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| chr6.4 | exon | 38946959 | 38947171 | 38946959 | ID=MS.gene30801.t1.exon3;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38946959 | 38947171 | 38946959 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| chr6.4 | exon | 38946672 | 38946869 | 38946672 | ID=MS.gene30801.t1.exon4;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38946672 | 38946869 | 38946672 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| chr6.4 | exon | 38946382 | 38946522 | 38946382 | ID=MS.gene30801.t1.exon5;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38946382 | 38946522 | 38946382 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| chr6.4 | exon | 38945504 | 38945620 | 38945504 | ID=MS.gene30801.t1.exon6;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38945504 | 38945620 | 38945504 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| chr6.4 | exon | 38944489 | 38944626 | 38944489 | ID=MS.gene30801.t1.exon7;Parent=MS.gene30801.t1 |
| chr6.4 | CDS | 38944489 | 38944626 | 38944489 | ID=cds.MS.gene30801.t1;Parent=MS.gene30801.t1 |
| Gene Sequence |
| Protein sequence |
