AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31358

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31358.t1 MTR_2g091325 85.524 601 65 3 1 600 1 580 0.0 957
MS.gene31358.t1 MTR_2g091335 52.373 590 147 10 2 591 1 456 7.84e-162 476
MS.gene31358.t1 MTR_2g091280 53.422 599 205 11 1 567 1 557 4.39e-151 452
MS.gene31358.t1 MTR_2g091280 56.338 355 133 4 243 580 375 724 7.53e-91 296
MS.gene31358.t1 MTR_2g091280 35.273 275 129 8 160 388 443 714 1.54e-18 90.1
MS.gene31358.t1 MTR_2g091015 51.608 622 205 11 5 573 5 583 1.81e-145 443
MS.gene31358.t1 MTR_2g091015 58.201 378 124 6 232 591 362 723 6.70e-101 327
MS.gene31358.t1 MTR_2g091015 29.710 276 110 6 199 390 443 718 2.56e-13 73.6
MS.gene31358.t1 MTR_2g091260 46.154 637 278 11 2 591 1 619 8.11e-130 402
MS.gene31358.t1 MTR_2g091010 44.127 630 299 13 2 597 1 611 1.87e-125 387
MS.gene31358.t1 MTR_2g091030 55.556 450 166 8 2 445 1 422 7.02e-118 362
MS.gene31358.t1 MTR_2g091030 47.692 325 118 7 291 591 146 442 2.21e-48 178
MS.gene31358.t1 MTR_2g091330 46.819 613 256 14 2 567 1 590 4.08e-113 351
MS.gene31358.t1 MTR_2g091285 51.236 445 178 6 1 440 1 411 3.27e-112 348
MS.gene31358.t1 MTR_2g091285 50.336 298 119 5 308 591 154 436 1.44e-61 214
MS.gene31358.t1 MTR_2g093010 43.291 626 270 12 1 574 1 593 9.71e-112 354
MS.gene31358.t1 MTR_2g093010 50.000 206 91 2 243 438 462 665 8.73e-40 156
MS.gene31358.t1 MTR_2g091290 44.288 569 282 12 51 597 26 581 7.20e-111 351
MS.gene31358.t1 MTR_2g093010 43.200 625 270 12 2 574 1 592 7.83e-111 352
MS.gene31358.t1 MTR_2g093010 50.000 206 91 2 243 438 461 664 8.47e-40 156
MS.gene31358.t1 MTR_7g056313 56.522 368 98 7 75 414 36 369 2.31e-110 335
MS.gene31358.t1 MTR_7g056313 40.684 263 137 5 308 554 110 369 1.54e-28 117
MS.gene31358.t1 MTR_2g091080 40.472 635 270 10 43 599 3 607 4.36e-105 334
MS.gene31358.t1 MTR_2g091370 43.952 587 295 11 2 570 1 571 4.67e-105 336
MS.gene31358.t1 MTR_2g091315 42.525 602 261 13 2 559 1 561 6.89e-100 315
MS.gene31358.t1 MTR_2g091315 37.949 195 97 3 404 574 251 445 6.06e-11 65.9
MS.gene31358.t1 MTR_2g091250 43.361 595 243 14 47 568 28 601 5.63e-95 317
MS.gene31358.t1 MTR_2g091250 47.381 420 140 4 232 570 394 813 2.97e-81 278
MS.gene31358.t1 MTR_2g091250 47.775 427 169 8 210 599 631 1040 4.99e-76 263
MS.gene31358.t1 MTR_2g091250 48.246 342 153 2 243 560 504 845 7.45e-68 240
MS.gene31358.t1 MTR_2g091250 40.524 496 198 11 168 570 266 757 6.37e-62 223
MS.gene31358.t1 MTR_2g091105 45.885 486 159 10 2 455 1 414 4.20e-93 301
MS.gene31358.t1 MTR_2g091105 45.000 320 148 7 249 553 94 400 5.69e-44 167
MS.gene31358.t1 MTR_2g091105 38.636 176 87 4 412 584 207 364 7.86e-17 84.7
MS.gene31358.t1 MTR_5g038810 53.846 351 127 6 71 421 17 332 5.81e-86 281
MS.gene31358.t1 MTR_5g038810 39.062 256 151 2 319 574 81 331 3.62e-27 117
MS.gene31358.t1 MTR_5g038810 37.131 237 126 3 305 518 81 317 1.24e-22 102
MS.gene31358.t1 MTR_2g091110 41.772 553 265 13 42 567 2 524 2.62e-83 284
MS.gene31358.t1 MTR_2g091110 45.147 443 205 7 165 570 457 898 2.63e-78 270
MS.gene31358.t1 MTR_2g091110 51.436 383 126 5 233 555 648 1030 2.11e-72 253
MS.gene31358.t1 MTR_2g091110 38.550 524 219 9 130 567 319 825 4.54e-61 220
MS.gene31358.t1 MTR_2g091110 42.188 320 96 6 226 457 712 1030 2.20e-41 161
MS.gene31358.t1 MTR_2g091005 38.540 589 286 13 2 577 1 526 2.79e-80 265
MS.gene31358.t1 MTR_6g045183 42.972 498 217 11 1 442 1 487 3.43e-77 260
MS.gene31358.t1 MTR_6g045183 38.182 385 202 6 211 579 134 498 2.66e-40 157
MS.gene31358.t1 MTR_3g110385 36.953 571 242 9 92 579 34 569 4.46e-73 250
MS.gene31358.t1 MTR_2g090640 49.695 328 107 4 204 475 100 425 1.53e-68 232
MS.gene31358.t1 MTR_2g091245 42.931 389 166 10 48 404 13 377 9.27e-66 227
MS.gene31358.t1 MTR_2g091245 44.262 305 124 6 305 579 110 398 1.18e-40 157
MS.gene31358.t1 MTR_5g078510 51.351 296 133 2 290 581 1 289 2.48e-61 213
MS.gene31358.t1 MTR_5g078510 42.126 254 128 5 207 452 26 268 1.00e-20 96.3
MS.gene31358.t1 MTR_5g078510 32.993 294 136 7 145 393 2 279 8.02e-18 87.4
MS.gene31358.t1 MTR_2g010420 33.003 606 275 13 51 579 25 576 5.37e-61 216
MS.gene31358.t1 MTR_2g010420 33.874 555 236 14 120 569 66 594 1.02e-55 201
MS.gene31358.t1 MTR_2g010420 33.003 606 275 13 51 579 25 576 1.11e-60 216
MS.gene31358.t1 MTR_2g010420 33.874 555 236 14 120 569 66 594 1.30e-55 202
MS.gene31358.t1 MTR_2g091040 39.374 447 191 13 1 441 1 373 4.73e-57 201
MS.gene31358.t1 MTR_2g091040 38.006 321 169 6 286 599 96 393 2.22e-32 131
MS.gene31358.t1 MTR_2g091090 39.374 447 191 13 1 441 1 373 4.42e-56 201
MS.gene31358.t1 MTR_2g091090 38.318 321 168 6 286 599 96 393 3.28e-32 132
MS.gene31358.t1 MTR_2g104190 37.821 468 237 14 2 435 1 448 1.11e-54 196
MS.gene31358.t1 MTR_2g104190 30.625 320 161 10 281 560 149 447 2.21e-14 76.6
MS.gene31358.t1 MTR_5g078500 36.957 368 157 11 2 358 1 304 1.16e-45 164
MS.gene31358.t1 MTR_5g078500 36.316 190 110 3 308 497 125 303 7.08e-16 79.3
MS.gene31358.t1 MTR_2g091240 49.107 224 90 3 388 599 125 336 2.52e-43 164
MS.gene31358.t1 MTR_2g091240 40.084 237 124 3 196 424 94 320 5.57e-28 119
MS.gene31358.t1 MTR_2g091240 33.071 381 207 13 41 414 10 349 2.08e-26 114
MS.gene31358.t1 MTR_2g091025 43.621 243 103 3 311 553 136 344 1.17e-34 139
MS.gene31358.t1 MTR_2g091025 43.913 230 94 4 251 470 136 340 8.25e-32 130
MS.gene31358.t1 MTR_2g091025 41.631 233 120 6 368 594 137 359 2.35e-30 126
MS.gene31358.t1 MTR_2g091025 38.350 206 124 1 296 498 135 340 5.50e-24 106
MS.gene31358.t1 MTR_2g091025 31.818 418 196 15 2 411 1 337 5.63e-19 91.3
MS.gene31358.t1 MTR_2g091360 54.264 129 55 1 379 503 41 169 6.85e-26 108
MS.gene31358.t1 MTR_2g091360 45.143 175 68 3 231 405 23 169 1.86e-24 105
MS.gene31358.t1 MTR_2g091360 44.025 159 62 5 291 448 24 156 7.71e-16 79.3
MS.gene31358.t1 MTR_2g091360 43.609 133 57 2 421 549 41 159 6.87e-14 73.6
MS.gene31358.t1 MTR_2g103640 33.333 285 124 10 81 357 2 228 2.28e-21 96.3
MS.gene31358.t1 MTR_2g103640 44.796 221 75 7 365 567 37 228 3.12e-21 95.9
MS.gene31358.t1 MTR_2g103640 39.286 168 85 2 309 476 71 221 8.84e-12 67.4
MS.gene31358.t1 MTR_2g103620 38.610 259 120 9 71 329 4 223 1.07e-19 91.7
MS.gene31358.t1 MTR_2g103620 49.405 168 75 3 365 526 61 224 1.93e-19 90.9
MS.gene31358.t1 MTR_8g106540 47.917 96 46 1 381 476 26 117 3.64e-13 70.9
MS.gene31358.t1 MTR_2g064120 50.505 99 42 4 84 181 118 210 4.33e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCAATCTCTCTCTTTA+TGG 0.138778 2.4:+8977609 None:intergenic
TCGTCAAAATAGTTCATTAA+TGG 0.190625 2.4:+8976416 None:intergenic
AGCAATGATTCCTCAGATTA+TGG 0.195846 2.4:-8977956 MS.gene31358:CDS
CAATTATCCAAAGTATTTAA+AGG 0.215867 2.4:-8975739 MS.gene31358:CDS
TATTTCGTCAAGAATTAAAA+TGG 0.260976 2.4:-8977746 MS.gene31358:CDS
GTAATACACTACCAGTTAAA+AGG 0.320312 2.4:-8977876 MS.gene31358:CDS
TCACATTCCTTTAAATACTT+TGG 0.334613 2.4:+8975732 None:intergenic
AGATCTTGAAAATAAGAAAA+AGG 0.341083 2.4:-8977578 MS.gene31358:CDS
ACAAAGCTTAATAAATTTGA+TGG 0.341565 2.4:-8976479 MS.gene31358:CDS
GCAATGATTCCTCAGATTAT+GGG 0.352268 2.4:-8977955 MS.gene31358:CDS
TCAAAAGAGGAGGAGTTTAA+AGG 0.367324 2.4:-8976731 MS.gene31358:CDS
CTGATTCCAACTCCTTCACT+TGG 0.380824 2.4:+8976834 None:intergenic
ACATGTAATAATAACAATAA+TGG 0.385710 2.4:-8977925 MS.gene31358:CDS
TATAAAGAGAAGCAACTTGA+TGG 0.408541 2.4:-8977067 MS.gene31358:CDS
TATTTGATGGAGGACTTGAT+TGG 0.409942 2.4:-8977457 MS.gene31358:CDS
AATTTATTAAGCTTTGTCTC+TGG 0.429646 2.4:+8976485 None:intergenic
TTGAATCAAGCTCCTTCATT+CGG 0.436075 2.4:+8977254 None:intergenic
TTAAAAGACAAGCAATTTGA+AGG 0.442022 2.4:-8976521 MS.gene31358:CDS
GGAAGCACACCTCTATTTGA+TGG 0.443917 2.4:-8977470 MS.gene31358:CDS
GAGAATAAGTTCAAAGTACT+AGG 0.444546 2.4:-8976557 MS.gene31358:CDS
TTGATTCATGCTCCTTCACC+CGG 0.446148 2.4:+8977212 None:intergenic
CGTTATCATCATACGGTGCT+GGG 0.451444 2.4:+8977797 None:intergenic
AATCATTTGTGGGTTGCAAA+AGG 0.460427 2.4:-8977663 MS.gene31358:CDS
GAAGGAGGAATTCAAAGGTC+AGG 0.471633 2.4:-8976684 MS.gene31358:CDS
TCAAAAGAAAAGCAATTTGA+AGG 0.472186 2.4:-8976773 MS.gene31358:CDS
TCGTTATCATCATACGGTGC+TGG 0.482747 2.4:+8977796 None:intergenic
TTGATTCAAACTCCTTTGCT+CGG 0.482976 2.4:+8976876 None:intergenic
GCAATTGAAAGGACAAGTTA+AGG 0.485918 2.4:-8977098 MS.gene31358:CDS
CGAAGCTCGCAAGAAAATCC+AGG 0.486257 2.4:-8977530 MS.gene31358:CDS
AAAGCAGCAATTTGAAAGCC+AGG 0.488186 2.4:-8976642 MS.gene31358:CDS
GCAAGCCATTTAAAATTGAA+AGG 0.489730 2.4:+8978057 None:intergenic
AGAGAAGGAATTTGAAATCC+AGG 0.492808 2.4:-8977326 MS.gene31358:CDS
GTCCATAAAGAGAGAGATTG+AGG 0.494859 2.4:-8977611 MS.gene31358:CDS
AATTTCTACAGTTGAATGAT+GGG 0.496034 2.4:-8978132 None:intergenic
ACAATTGAAAGGACAAGTTA+AGG 0.498337 2.4:-8976930 MS.gene31358:CDS
CATTCACTAGCTCCTTCACC+TGG 0.501627 2.4:+8977308 None:intergenic
GAAGGAGTTTGAATCAAAGA+AGG 0.501648 2.4:-8976702 MS.gene31358:CDS
AATACTTTGGATAATTGAGA+AGG 0.508936 2.4:+8975745 None:intergenic
TCAAGTCCTCCATCAAATAG+AGG 0.517023 2.4:+8977461 None:intergenic
TCAAAAGAGGATGAATTTGA+AGG 0.517933 2.4:-8976857 MS.gene31358:CDS
AAAAGAAGCATTTCGAGAGC+AGG 0.517991 2.4:-8976811 MS.gene31358:CDS
TAGATTCCAGCTCCTTCACA+TGG 0.519246 2.4:+8977002 None:intergenic
TAAATTTGATGGACAAGTGA+AGG 0.519927 2.4:-8976468 MS.gene31358:CDS
GTGATTTGAACTCCTCCACT+TGG 0.520171 2.4:+8977128 None:intergenic
TAGAGAAGCAACATGAAGGC+CGG 0.522149 2.4:-8977231 MS.gene31358:CDS
CAAAACAGAAGCATTTCGAA+AGG 0.523138 2.4:-8977372 MS.gene31358:CDS
AGAACAGCGGAAAGAATTTG+AGG 0.529889 2.4:-8976585 MS.gene31358:CDS
TATTGTTTCACTGTCAACTC+AGG 0.532627 2.4:+8976443 None:intergenic
TTTGACGAGGAAACAGAATC+GGG 0.535253 2.4:-8976401 MS.gene31358:intron
CGAAGGCCATGTGAAGGAGC+TGG 0.538482 2.4:-8977008 MS.gene31358:CDS
GCATTTCGAAGGCCGAATGA+AGG 0.542504 2.4:-8977266 MS.gene31358:CDS
AGTGAAGACTTTGAATCTGA+AGG 0.543480 2.4:-8978000 MS.gene31358:CDS
GGAATTTGAATCAAAAGAGA+AGG 0.545096 2.4:-8977341 MS.gene31358:CDS
GATAACAACAATGCCTTGCA+CGG 0.547240 2.4:-8977844 MS.gene31358:CDS
GCAACATGAAGGCCGGGTGA+AGG 0.547954 2.4:-8977224 MS.gene31358:CDS
AGAGAAGCAACATGAAGGCC+GGG 0.549296 2.4:-8977230 MS.gene31358:CDS
GGAGTTTGAATCAAAGAAGG+AGG 0.550239 2.4:-8976699 MS.gene31358:CDS
TTTCTTAATCGAACCGTGCA+AGG 0.550857 2.4:+8977831 None:intergenic
ATACTTTGGATAATTGAGAA+GGG 0.550923 2.4:+8975746 None:intergenic
AAAGGAGTTTGAATCAAAAG+AGG 0.554492 2.4:-8976870 MS.gene31358:CDS
TGAAGAGCAAGTGAAGGAGC+TGG 0.555980 2.4:-8977176 MS.gene31358:CDS
TGAAGGCCAAGTGAAGGAGT+TGG 0.560212 2.4:-8976840 MS.gene31358:CDS
GAAAATCGATGGCCGAGCAA+AGG 0.564000 2.4:-8976888 MS.gene31358:CDS
GCAATTTGAAGGACAAGTGA+AGG 0.564315 2.4:-8976762 MS.gene31358:CDS
TGAGGAATCATTGCTGACAA+AGG 0.566248 2.4:+8977964 None:intergenic
GCAATTTGAAGGACAAGTCA+AGG 0.571346 2.4:-8976510 MS.gene31358:CDS
GGAGTTTAAAGGTCAAGTGA+AGG 0.577732 2.4:-8976720 MS.gene31358:CDS
GAAGGAGTTCCAGTCAAAAG+AGG 0.579907 2.4:-8976744 MS.gene31358:CDS
AGAATAAGTTCAAAGTACTA+GGG 0.580517 2.4:-8976556 MS.gene31358:CDS
TCACAACAGAGGCAATTGAA+AGG 0.580934 2.4:-8977109 MS.gene31358:CDS
GCATTTCGAGAGCAGGCTGA+AGG 0.586547 2.4:-8976804 MS.gene31358:CDS
TAATGGTTCTGTTAAGAAGA+GGG 0.588477 2.4:-8977908 MS.gene31358:CDS
TCAATAGAGAAGCAACATGA+AGG 0.588760 2.4:-8977235 MS.gene31358:CDS
GGAATTTGAAATCCAGGTGA+AGG 0.590644 2.4:-8977320 MS.gene31358:CDS
ATAATGGTTCTGTTAAGAAG+AGG 0.593792 2.4:-8977909 MS.gene31358:CDS
GTTAAGAAGAGGGATACTAC+TGG 0.594551 2.4:-8977898 MS.gene31358:CDS
CAAAATTGAAGAATGTGTCA+AGG 0.598746 2.4:-8977506 MS.gene31358:CDS
TGAATTTGAAGGCCAAGTGA+AGG 0.606809 2.4:-8976846 MS.gene31358:CDS
GATAGAACTTCATCAAGTCA+AGG 0.606983 2.4:-8977404 MS.gene31358:CDS
GCATTTCGAAAGGCAAGTGA+AGG 0.609390 2.4:-8977362 MS.gene31358:CDS
TCAAAGAAGGAGGAATTCAA+AGG 0.609408 2.4:-8976689 MS.gene31358:CDS
TCATCGTCGTTATCATCATA+CGG 0.618345 2.4:+8977790 None:intergenic
TCAAAAGTGAGACAATTGAA+AGG 0.620856 2.4:-8976941 MS.gene31358:CDS
GGAGTTCCAGTCAAAAGAGG+AGG 0.632267 2.4:-8976741 MS.gene31358:CDS
TGTAAAGAGAAGAAAATCGA+TGG 0.632784 2.4:-8976899 MS.gene31358:CDS
GAAGCTCGCAAGAAAATCCA+GGG 0.635919 2.4:-8977529 MS.gene31358:CDS
GCTGAAGAAAGAACTCACAT+TGG 0.636049 2.4:-8977692 MS.gene31358:CDS
AGAATTCGAAGGCCATGTGA+AGG 0.636837 2.4:-8977014 MS.gene31358:CDS
GTTCTCAAACCCATAATCTG+AGG 0.639071 2.4:+8977946 None:intergenic
AAGTATTTAAAGGAATGTGA+AGG 0.643036 2.4:-8975729 None:intergenic
CGGTTCGATTAAGAAATCAA+AGG 0.648202 2.4:-8977824 MS.gene31358:CDS
ACAAAACAGAAGCATTTCGA+AGG 0.648678 2.4:-8977277 MS.gene31358:CDS
AGAAGCAATTTGAAGAACAG+CGG 0.652301 2.4:-8976598 MS.gene31358:CDS
GAAGCAACTTGATGGACGAG+TGG 0.655238 2.4:-8977059 MS.gene31358:CDS
GTTATCATCATACGGTGCTG+GGG 0.667774 2.4:+8977798 None:intergenic
AGCACACCTCTATTTGATGG+AGG 0.669820 2.4:-8977467 MS.gene31358:CDS
AGGAGTTCAAATCACAACAG+AGG 0.718141 2.4:-8977120 MS.gene31358:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGAAATTATTTATGT+TGG - chr2.4:8976287-8976306 MS.gene31358:intron 15.0%
!! ACATGTAATAATAACAATAA+TGG - chr2.4:8975924-8975943 MS.gene31358:intron 15.0%
!! ACAAAGCTTAATAAATTTGA+TGG - chr2.4:8977370-8977389 MS.gene31358:CDS 20.0%
!! AGATCTTGAAAATAAGAAAA+AGG - chr2.4:8976271-8976290 MS.gene31358:intron 20.0%
!! TATTTCGTCAAGAATTAAAA+TGG - chr2.4:8976103-8976122 MS.gene31358:intron 20.0%
!!! AAGAACCTTTCAATTTTAAA+TGG - chr2.4:8975787-8975806 MS.gene31358:intron 20.0%
!!! ATTTTAATTCTTGACGAAAT+AGG + chr2.4:8976104-8976123 None:intergenic 20.0%
!!! CAATTATCCAAAGTATTTAA+AGG - chr2.4:8978110-8978129 MS.gene31358:CDS 20.0%
! AATACTTTGGATAATTGAGA+AGG + chr2.4:8978107-8978126 None:intergenic 25.0%
! ACACAAAATATGAAAAAGCA+TGG + chr2.4:8977795-8977814 None:intergenic 25.0%
! ATACTTTGGATAATTGAGAA+GGG + chr2.4:8978106-8978125 None:intergenic 25.0%
! ATTGGTAGAAAAATCATTTG+TGG - chr2.4:8976175-8976194 MS.gene31358:intron 25.0%
! TCAAAAAATAGAGAATTCGA+AGG - chr2.4:8976824-8976843 MS.gene31358:CDS 25.0%
! TCAAAAGAAAAGCAATTTGA+AGG - chr2.4:8977076-8977095 MS.gene31358:CDS 25.0%
! TCACATTCCTTTAAATACTT+TGG + chr2.4:8978120-8978139 None:intergenic 25.0%
! TCGTCAAAATAGTTCATTAA+TGG + chr2.4:8977436-8977455 None:intergenic 25.0%
! TTAAAAGACAAGCAATTTGA+AGG - chr2.4:8977328-8977347 MS.gene31358:CDS 25.0%
! TTGGTAGAAAAATCATTTGT+GGG - chr2.4:8976176-8976195 MS.gene31358:intron 25.0%
!! AATTTATTAAGCTTTGTCTC+TGG + chr2.4:8977367-8977386 None:intergenic 25.0%
!! AGAATAAGTTCAAAGTACTA+GGG - chr2.4:8977293-8977312 MS.gene31358:CDS 25.0%
!! CACATTATTTCTTCTATTTC+AGG - chr2.4:8978053-8978072 MS.gene31358:CDS 25.0%
!! TCAATTAACATCCTTTTAAC+TGG + chr2.4:8975987-8976006 None:intergenic 25.0%
!! TTATTTCTTCTATTTCAGGT+TGG - chr2.4:8978057-8978076 MS.gene31358:CDS 25.0%
!!! AAGTTTGTTATTTCCCTATT+TGG - chr2.4:8977756-8977775 MS.gene31358:CDS 25.0%
!!! ATTAATGAACTATTTTGACG+AGG - chr2.4:8977435-8977454 MS.gene31358:CDS 25.0%
!!! GATAAATCAAAGTTTTGTGT+TGG - chr2.4:8975753-8975772 MS.gene31358:CDS 25.0%
AAAGGAGTTTGAATCAAAAG+AGG - chr2.4:8976979-8976998 MS.gene31358:CDS 30.0%
ACAATTGAAAGGACAAGTTA+AGG - chr2.4:8976919-8976938 MS.gene31358:CDS 30.0%
CAAAATTGAAGAATGTGTCA+AGG - chr2.4:8976343-8976362 MS.gene31358:intron 30.0%
CAAACAACAGAATCCAAATA+GGG + chr2.4:8977772-8977791 None:intergenic 30.0%
GGAATTTGAATCAAAAGAGA+AGG - chr2.4:8976508-8976527 MS.gene31358:CDS 30.0%
GTAATACACTACCAGTTAAA+AGG - chr2.4:8975973-8975992 MS.gene31358:intron 30.0%
TATAAAGAGAAGCAACTTGA+TGG - chr2.4:8976782-8976801 MS.gene31358:CDS 30.0%
TCAAAAGAGGATGAATTTGA+AGG - chr2.4:8976992-8977011 MS.gene31358:CDS 30.0%
TCAAAAGTGAGACAATTGAA+AGG - chr2.4:8976908-8976927 MS.gene31358:CDS 30.0%
TGTAAAGAGAAGAAAATCGA+TGG - chr2.4:8976950-8976969 MS.gene31358:CDS 30.0%
! ATAATGGTTCTGTTAAGAAG+AGG - chr2.4:8975940-8975959 MS.gene31358:intron 30.0%
! GAGAATAAGTTCAAAGTACT+AGG - chr2.4:8977292-8977311 MS.gene31358:CDS 30.0%
! GCAAGCCATTTAAAATTGAA+AGG + chr2.4:8975795-8975814 None:intergenic 30.0%
! TAAATTTGATGGACAAGTGA+AGG - chr2.4:8977381-8977400 MS.gene31358:CDS 30.0%
! TAATGGTTCTGTTAAGAAGA+GGG - chr2.4:8975941-8975960 MS.gene31358:intron 30.0%
! TCATTTTGTTGGTACTTTTG+TGG - chr2.4:8978016-8978035 MS.gene31358:CDS 30.0%
! TTCATTGGTACTCATTTTGT+TGG - chr2.4:8978005-8978024 MS.gene31358:CDS 30.0%
!! TTGATTTTAAGTACTCAACC+TGG + chr2.4:8977228-8977247 None:intergenic 30.0%
AACCTGATCTACACATATGA+GGG - chr2.4:8977545-8977564 MS.gene31358:CDS 35.0%
ACCATGTATCATTTCATCAG+TGG + chr2.4:8977710-8977729 None:intergenic 35.0%
AGAAGCAATTTGAAGAACAG+CGG - chr2.4:8977251-8977270 MS.gene31358:CDS 35.0%
AGCAATGATTCCTCAGATTA+TGG - chr2.4:8975893-8975912 MS.gene31358:intron 35.0%
AGTGAAGACTTTGAATCTGA+AGG - chr2.4:8975849-8975868 MS.gene31358:intron 35.0%
CCAAAATATCTGTGTGAACT+TGG - chr2.4:8977590-8977609 MS.gene31358:CDS 35.0%
CGGTTCGATTAAGAAATCAA+AGG - chr2.4:8976025-8976044 MS.gene31358:intron 35.0%
GAAGGAGTTTGAATCAAAGA+AGG - chr2.4:8977147-8977166 MS.gene31358:CDS 35.0%
GATAGAACTTCATCAAGTCA+AGG - chr2.4:8976445-8976464 MS.gene31358:CDS 35.0%
GCAAACAACAGAATCCAAAT+AGG + chr2.4:8977773-8977792 None:intergenic 35.0%
GCAATGATTCCTCAGATTAT+GGG - chr2.4:8975894-8975913 MS.gene31358:intron 35.0%
GCAATTGAAAGGACAAGTTA+AGG - chr2.4:8976751-8976770 MS.gene31358:CDS 35.0%
TAACCTGATCTACACATATG+AGG - chr2.4:8977544-8977563 MS.gene31358:CDS 35.0%
TATTGTTTCACTGTCAACTC+AGG + chr2.4:8977409-8977428 None:intergenic 35.0%
TATTTGATGGAGGACTTGAT+TGG - chr2.4:8976392-8976411 MS.gene31358:intron 35.0%
TCAAAAGAGGAGGAGTTTAA+AGG - chr2.4:8977118-8977137 MS.gene31358:CDS 35.0%
TCAAAGAAGGAGGAATTCAA+AGG - chr2.4:8977160-8977179 MS.gene31358:CDS 35.0%
TCAATAGAGAAGCAACATGA+AGG - chr2.4:8976614-8976633 MS.gene31358:CDS 35.0%
TCATCGTCGTTATCATCATA+CGG + chr2.4:8976062-8976081 None:intergenic 35.0%
TCCACTGATGAAATGATACA+TGG - chr2.4:8977706-8977725 MS.gene31358:CDS 35.0%
TTGAATCAAGCTCCTTCATT+CGG + chr2.4:8976598-8976617 None:intergenic 35.0%
TTGAATGTAATCACACGTGT+CGG - chr2.4:8977905-8977924 MS.gene31358:CDS 35.0%
TTGATTCAAACTCCTTTGCT+CGG + chr2.4:8976976-8976995 None:intergenic 35.0%
! AATCATTTGTGGGTTGCAAA+AGG - chr2.4:8976186-8976205 MS.gene31358:intron 35.0%
! AGAGAAGGAATTTGAAATCC+AGG - chr2.4:8976523-8976542 MS.gene31358:CDS 35.0%
! CCAAGTTCACACAGATATTT+TGG + chr2.4:8977593-8977612 None:intergenic 35.0%
! TGTCAAGGATTTTGTAGCAA+AGG - chr2.4:8976358-8976377 MS.gene31358:intron 35.0%
! TTTTGACGAGGAAACAGAAT+CGG - chr2.4:8977447-8977466 MS.gene31358:CDS 35.0%
!! ACAAAACAGAAGCATTTCGA+AGG - chr2.4:8976572-8976591 MS.gene31358:CDS 35.0%
!! AGATTTTGAAGAGCAAGTGA+AGG - chr2.4:8976667-8976686 MS.gene31358:CDS 35.0%
!! CAAAACAGAAGCATTTCGAA+AGG - chr2.4:8976477-8976496 MS.gene31358:CDS 35.0%
!!! GTGTTTTGAAAGTCAAGTTG+AGG - chr2.4:8976877-8976896 MS.gene31358:CDS 35.0%
AAAGCAGCAATTTGAAAGCC+AGG - chr2.4:8977207-8977226 MS.gene31358:CDS 40.0%
AATGATACATGGTCTCTGTC+TGG - chr2.4:8977717-8977736 MS.gene31358:CDS 40.0%
ACACATATGAGGGAGCTTAA+AGG - chr2.4:8977555-8977574 MS.gene31358:CDS 40.0%
AGAACAGCGGAAAGAATTTG+AGG - chr2.4:8977264-8977283 MS.gene31358:CDS 40.0%
AGGAGTTCAAATCACAACAG+AGG - chr2.4:8976729-8976748 MS.gene31358:CDS 40.0%
ATATGAGGGAGCTTAAAGGT+AGG - chr2.4:8977559-8977578 MS.gene31358:CDS 40.0%
CTCCTCAATCTCTCTCTTTA+TGG + chr2.4:8976243-8976262 None:intergenic 40.0%
GAGGTTATCGCTCATTTCAT+TGG - chr2.4:8977990-8978009 MS.gene31358:CDS 40.0%
GATAACAACAATGCCTTGCA+CGG - chr2.4:8976005-8976024 MS.gene31358:intron 40.0%
GCAATTTGAAGGACAAGTCA+AGG - chr2.4:8977339-8977358 MS.gene31358:CDS 40.0%
GCAATTTGAAGGACAAGTGA+AGG - chr2.4:8977087-8977106 MS.gene31358:CDS 40.0%
GCCTTTGATCATAAGTGTCA+GGG - chr2.4:8977962-8977981 MS.gene31358:CDS 40.0%
GCTGAAGAAAGAACTCACAT+TGG - chr2.4:8976157-8976176 MS.gene31358:intron 40.0%
GGAGTTTAAAGGTCAAGTGA+AGG - chr2.4:8977129-8977148 MS.gene31358:CDS 40.0%
GGAGTTTGAATCAAAGAAGG+AGG - chr2.4:8977150-8977169 MS.gene31358:CDS 40.0%
GTCCATAAAGAGAGAGATTG+AGG - chr2.4:8976238-8976257 MS.gene31358:intron 40.0%
GTTAAGAAGAGGGATACTAC+TGG - chr2.4:8975951-8975970 MS.gene31358:intron 40.0%
GTTCTCAAACCCATAATCTG+AGG + chr2.4:8975906-8975925 None:intergenic 40.0%
TCAAGTCCTCCATCAAATAG+AGG + chr2.4:8976391-8976410 None:intergenic 40.0%
TCACAACAGAGGCAATTGAA+AGG - chr2.4:8976740-8976759 MS.gene31358:CDS 40.0%
TGAATTTGAAGGCCAAGTGA+AGG - chr2.4:8977003-8977022 MS.gene31358:CDS 40.0%
TGAGGAATCATTGCTGACAA+AGG + chr2.4:8975888-8975907 None:intergenic 40.0%
TTTCTTAATCGAACCGTGCA+AGG + chr2.4:8976021-8976040 None:intergenic 40.0%
TTTGACGAGGAAACAGAATC+GGG - chr2.4:8977448-8977467 MS.gene31358:CDS 40.0%
! CACATTCTTCAATTTTGCCC+TGG + chr2.4:8976340-8976359 None:intergenic 40.0%
! GGAATTTGAAATCCAGGTGA+AGG - chr2.4:8976529-8976548 MS.gene31358:CDS 40.0%
! TAAACTCCTCCTCTTTTGAC+TGG + chr2.4:8977117-8977136 None:intergenic 40.0%
!! AAAAGAAGCATTTCGAGAGC+AGG - chr2.4:8977038-8977057 MS.gene31358:CDS 40.0%
!! GAAGAGTTTTGATAGCCAAG+TGG - chr2.4:8976706-8976725 MS.gene31358:CDS 40.0%
AGAATTCGAAGGCCATGTGA+AGG - chr2.4:8976835-8976854 MS.gene31358:CDS 45.0%
AGCACACCTCTATTTGATGG+AGG - chr2.4:8976382-8976401 MS.gene31358:intron 45.0%
CATAAGTGTCAGGGCTATAG+AGG - chr2.4:8977971-8977990 MS.gene31358:CDS 45.0%
CGCCTTTGATCATAAGTGTC+AGG - chr2.4:8977961-8977980 MS.gene31358:CDS 45.0%
CGTTATCATCATACGGTGCT+GGG + chr2.4:8976055-8976074 None:intergenic 45.0%
CTCCCTCATATGTGTAGATC+AGG + chr2.4:8977550-8977569 None:intergenic 45.0%
CTGATTCCAACTCCTTCACT+TGG + chr2.4:8977018-8977037 None:intergenic 45.0%
GAAGCTCGCAAGAAAATCCA+GGG - chr2.4:8976320-8976339 MS.gene31358:intron 45.0%
GAAGGAGGAATTCAAAGGTC+AGG - chr2.4:8977165-8977184 MS.gene31358:CDS 45.0%
GAAGGAGTTCCAGTCAAAAG+AGG - chr2.4:8977105-8977124 MS.gene31358:CDS 45.0%
GCATTTCGAAAGGCAAGTGA+AGG - chr2.4:8976487-8976506 MS.gene31358:CDS 45.0%
GCCCTGACACTTATGATCAA+AGG + chr2.4:8977966-8977985 None:intergenic 45.0%
GTCCAGTGTTCAACATGTGT+CGG + chr2.4:8977940-8977959 None:intergenic 45.0%
GTGATTTGAACTCCTCCACT+TGG + chr2.4:8976724-8976743 None:intergenic 45.0%
TAGAGAAGCAACATGAAGGC+CGG - chr2.4:8976618-8976637 MS.gene31358:CDS 45.0%
TAGATTCCAGCTCCTTCACA+TGG + chr2.4:8976850-8976869 None:intergenic 45.0%
TCGTTATCATCATACGGTGC+TGG + chr2.4:8976056-8976075 None:intergenic 45.0%
TCTGATGCTTGTGTCTGTGT+TGG + chr2.4:8977836-8977855 None:intergenic 45.0%
TTGATTCATGCTCCTTCACC+CGG + chr2.4:8976640-8976659 None:intergenic 45.0%
! GGAAGCACACCTCTATTTGA+TGG - chr2.4:8976379-8976398 MS.gene31358:intron 45.0%
! GTTATCATCATACGGTGCTG+GGG + chr2.4:8976054-8976073 None:intergenic 45.0%
!! GAGTTTTGATAGCCAAGTGG+AGG - chr2.4:8976709-8976728 MS.gene31358:CDS 45.0%
AGAGAAGCAACATGAAGGCC+GGG - chr2.4:8976619-8976638 MS.gene31358:CDS 50.0%
CACCGACACATGTTGAACAC+TGG - chr2.4:8977935-8977954 MS.gene31358:CDS 50.0%
CATTCACTAGCTCCTTCACC+TGG + chr2.4:8976544-8976563 None:intergenic 50.0%
CGAAGCTCGCAAGAAAATCC+AGG - chr2.4:8976319-8976338 MS.gene31358:intron 50.0%
GAAAATCGATGGCCGAGCAA+AGG - chr2.4:8976961-8976980 MS.gene31358:CDS 50.0%
GCATTTCGAAGGCCGAATGA+AGG - chr2.4:8976583-8976602 MS.gene31358:CDS 50.0%
GGAGTTCCAGTCAAAAGAGG+AGG - chr2.4:8977108-8977127 MS.gene31358:CDS 50.0%
TGAAGAGCAAGTGAAGGAGC+TGG - chr2.4:8976673-8976692 MS.gene31358:CDS 50.0%
TGAAGGCCAAGTGAAGGAGT+TGG - chr2.4:8977009-8977028 MS.gene31358:CDS 50.0%
! GAAGCAACTTGATGGACGAG+TGG - chr2.4:8976790-8976809 MS.gene31358:CDS 50.0%
GCATTTCGAGAGCAGGCTGA+AGG - chr2.4:8977045-8977064 MS.gene31358:CDS 55.0%
CGAAGGCCATGTGAAGGAGC+TGG - chr2.4:8976841-8976860 MS.gene31358:CDS 60.0%
GCAACATGAAGGCCGGGTGA+AGG - chr2.4:8976625-8976644 MS.gene31358:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 8975732 8978139 8975732 ID=MS.gene31358
chr2.4 mRNA 8975732 8978139 8975732 ID=MS.gene31358.t1;Parent=MS.gene31358
chr2.4 exon 8976402 8978139 8976402 ID=MS.gene31358.t1.exon1;Parent=MS.gene31358.t1
chr2.4 CDS 8976402 8978139 8976402 ID=cds.MS.gene31358.t1;Parent=MS.gene31358.t1
chr2.4 exon 8975732 8975796 8975732 ID=MS.gene31358.t1.exon2;Parent=MS.gene31358.t1
chr2.4 CDS 8975732 8975796 8975732 ID=cds.MS.gene31358.t1;Parent=MS.gene31358.t1
Gene Sequence

>MS.gene31358

ATGATGGGTTTTGAGGCTTCTGATAAATCAAAGTTTTGTGTTGGTGATGCTGATGAAGAACCTTTCAATTTTAAATGGCTTGCATCATTTGATAAAAAAACATCGCATTCAGCTTCAAGTGAAGACTTTGAATCTGAAGGTGATGATGACGTTCCTTTGTCAGCAATGATTCCTCAGATTATGGGTTTGAGAACATGTAATAATAACAATAATGGTTCTGTTAAGAAGAGGGATACTACTGGTAATACACTACCAGTTAAAAGGATGTTAATTGATAACAACAATGCCTTGCACGGTTCGATTAAGAAATCAAAGGTGTCCCCAGCACCGTATGATGATAACGACGATGACAGTGATGACGACAATATTCCTATTTCGTCAAGAATTAAAATGGCTGAGATGTCAAGTGATAAATCATTTTTCTTGCTGAAGAAAGAACTCACATTGGTAGAAAAATCATTTGTGGGTTGCAAAAGGAAGAGACAAGTAGAAGAGAAGAGATTGCAGTCCATAAAGAGAGAGATTGAGGAGTGCTGCGAAGATCTTGAAAATAAGAAAAAGGAAATTATTTATGTTGGAAGTATTGACGAAGCTCGCAAGAAAATCCAGGGCAAAATTGAAGAATGTGTCAAGGATTTTGTAGCAAAGGAAGCACACCTCTATTTGATGGAGGACTTGATTGGAGAGTGCAAGCAAGAACTCAAGACAAAAGAGATAGAACTTCATCAAGTCAAGGATAACATTTCAAAACAGAAGCATTTCGAAAGGCAAGTGAAGGAATTTGAATCAAAAGAGAAGGAATTTGAAATCCAGGTGAAGGAGCTAGTGAATGATTTGATAACAAAACAGAAGCATTTCGAAGGCCGAATGAAGGAGCTTGATTCAATAGAGAAGCAACATGAAGGCCGGGTGAAGGAGCATGAATCAAAAAAGAGAGATTTTGAAGAGCAAGTGAAGGAGCTGGAATCTAAAAAGAAGAGTTTTGATAGCCAAGTGGAGGAGTTCAAATCACAACAGAGGCAATTGAAAGGACAAGTTAAGGAACTTGAGTATAAAGAGAAGCAACTTGATGGACGAGTGGAAGAGCATGAATCAAAAAATAGAGAATTCGAAGGCCATGTGAAGGAGCTGGAATCTAAAAAGAAGTGTTTTGAAAGTCAAGTTGAGGAGCTCAAATCAAAAGTGAGACAATTGAAAGGACAAGTTAAGGAACTTGAGTGTAAAGAGAAGAAAATCGATGGCCGAGCAAAGGAGTTTGAATCAAAAGAGGATGAATTTGAAGGCCAAGTGAAGGAGTTGGAATCAGAAAAGAAGCATTTCGAGAGCAGGCTGAAGGAGCTCGAATCAAAAGAAAAGCAATTTGAAGGACAAGTGAAGGAGTTCCAGTCAAAAGAGGAGGAGTTTAAAGGTCAAGTGAAGGAGTTTGAATCAAAGAAGGAGGAATTCAAAGGTCAGGTTAAGCAGCTCAATTTAAAAAAGCAGCAATTTGAAAGCCAGGTTGAGTACTTAAAATCAAAAGAGAAGCAATTTGAAGAACAGCGGAAAGAATTTGAGGCTGAAGAGAATAAGTTCAAAGTACTAGGGAAAGAGCTCAAGTTAAAAGACAAGCAATTTGAAGGACAAGTCAAGGATCCAGAGACAAAGCTTAATAAATTTGATGGACAAGTGAAGGAGCCTGAGTTGACAGTGAAACAATATGAACCATTAATGAACTATTTTGACGAGGAAACAGAATCGGGTAAATGTTCTTATTCATTTAGCTTATTGAAAATTTCATTTCAACAATTTCTTTTAATGATGTGTTATTTTTTATAACCTGATCTACACATATGAGGGAGCTTAAAGGTAGGAATTAAGTCCAAAATATCTGTGTGAACTTGGAGTTAGTATTCAAAAGATGAATATGAAACTTAATGATGAAGTTGATGTTCTATTTCTCACATTTTTGCTTGTTATATATCTGATGACTATATATCCACTGATGAAATGATACATGGTCTCTGTCTGGAACAAGAAAAACACACAAGTTTGTTATTTCCCTATTTGGATTCTGTTGTTTGCCATGCTTTTTCATATTTTGTGTGTTCTCATCTATGAAGCACCAACACAGACACAAGCATCAGATACGACATTAACACGTCGACATTTGTATTAATTTAAGAAAATGAATTAATTGAATGTAATCACACGTGTCGGTGTTGAACACCGACACATGTTGAACACTGGACGCGCCTTTGATCATAAGTGTCAGGGCTATAGAGGTTATCGCTCATTTCATTGGTACTCATTTTGTTGGTACTTTTGTGGATTGATGATTGACACACATTATTTCTTCTATTTCAGGTTGGAAAAGAATCTTATACAAGTTTTGCCCTTCTCAATTATCCAAAGTATTTAAAGGAATGTGA
Protein sequence

>MS.gene31358.t1

MMGFEASDKSKFCVGDADEEPFNFKWLASFDKKTSHSASSEDFESEGDDDVPLSAMIPQIMGLRTCNNNNNGSVKKRDTTGNTLPVKRMLIDNNNALHGSIKKSKVSPAPYDDNDDDSDDDNIPISSRIKMAEMSSDKSFFLLKKELTLVEKSFVGCKRKRQVEEKRLQSIKREIEECCEDLENKKKEIIYVGSIDEARKKIQGKIEECVKDFVAKEAHLYLMEDLIGECKQELKTKEIELHQVKDNISKQKHFERQVKEFESKEKEFEIQVKELVNDLITKQKHFEGRMKELDSIEKQHEGRVKEHESKKRDFEEQVKELESKKKSFDSQVEEFKSQQRQLKGQVKELEYKEKQLDGRVEEHESKNREFEGHVKELESKKKCFESQVEELKSKVRQLKGQVKELECKEKKIDGRAKEFESKEDEFEGQVKELESEKKHFESRLKELESKEKQFEGQVKEFQSKEEEFKGQVKEFESKKEEFKGQVKQLNLKKQQFESQVEYLKSKEKQFEEQRKEFEAEENKFKVLGKELKLKDKQFEGQVKDPETKLNKFDGQVKEPELTVKQYEPLMNYFDEETESGWKRILYKFCPSQLSKVFKGM