AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31483

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31483.t1 MTR_2g090255 97.382 191 5 0 2 192 62 252 1.10e-140 392
MS.gene31483.t1 MTR_0040s0140 83.770 191 31 0 2 192 66 256 6.25e-127 357
MS.gene31483.t1 MTR_5g076950 59.375 192 77 1 1 192 74 264 2.71e-84 250
MS.gene31483.t1 MTR_3g064510 57.653 196 76 3 3 192 90 284 3.14e-76 230
MS.gene31483.t1 MTR_5g075320 55.497 191 83 1 2 192 63 251 3.25e-76 229
MS.gene31483.t1 MTR_3g094060 54.450 191 85 1 2 192 65 253 2.09e-74 224
MS.gene31483.t1 MTR_3g435430 53.927 191 86 1 2 192 59 247 2.37e-74 224
MS.gene31483.t1 MTR_5g079950 51.562 192 93 0 1 192 66 257 3.25e-74 224
MS.gene31483.t1 MTR_4g081950 54.211 190 85 1 2 191 95 282 5.27e-74 224
MS.gene31483.t1 MTR_3g094040 54.450 191 85 1 2 192 65 253 5.77e-74 223
MS.gene31483.t1 MTR_2g097030 51.562 192 93 0 1 192 67 258 6.89e-74 223
MS.gene31483.t1 MTR_7g061720 50.521 192 95 0 1 192 65 256 2.45e-73 222
MS.gene31483.t1 MTR_3g466790 53.927 191 86 1 2 192 66 254 3.49e-73 221
MS.gene31483.t1 MTR_3g466760 53.927 191 86 1 2 192 72 260 3.78e-73 221
MS.gene31483.t1 MTR_5g041700 51.832 191 90 1 2 192 59 247 5.87e-73 221
MS.gene31483.t1 MTR_7g013140 50.000 190 93 1 1 190 61 248 5.93e-69 211
MS.gene31483.t1 MTR_4g063975 51.042 192 94 0 1 192 65 256 7.78e-69 210
MS.gene31483.t1 MTR_7g011060 49.738 191 86 2 2 192 60 240 2.24e-67 206
MS.gene31483.t1 MTR_4g124340 50.000 192 95 1 1 191 92 283 2.87e-67 207
MS.gene31483.t1 MTR_7g013150 47.895 190 97 1 1 190 63 250 1.72e-65 202
MS.gene31483.t1 MTR_7g110990 50.785 191 90 3 1 188 45 234 2.58e-65 201
MS.gene31483.t1 MTR_7g111010 50.785 191 90 3 1 188 60 249 3.40e-65 201
MS.gene31483.t1 MTR_1g085460 49.741 193 93 3 1 190 63 254 2.42e-64 199
MS.gene31483.t1 MTR_8g058990 49.206 189 94 1 1 189 63 249 2.64e-64 199
MS.gene31483.t1 MTR_8g464350 48.404 188 95 1 1 188 64 249 5.86e-63 195
MS.gene31483.t1 MTR_7g013120 48.438 192 96 2 1 191 62 251 3.69e-62 193
MS.gene31483.t1 MTR_1g026020 45.550 191 101 2 2 190 63 252 7.50e-60 187
MS.gene31483.t1 MTR_6g012520 51.309 191 83 2 2 192 62 242 1.87e-57 181
MS.gene31483.t1 MTR_4g102450 44.920 187 101 2 3 188 71 256 1.39e-54 174
MS.gene31483.t1 MTR_5g011210 42.857 189 106 2 3 190 72 259 6.92e-53 170
MS.gene31483.t1 MTR_0008s0120 50.000 108 54 0 82 189 88 195 3.92e-35 122
MS.gene31483.t1 MTR_6g012500 52.000 100 48 0 93 192 181 280 2.63e-32 117
MS.gene31483.t1 MTR_0118s0070 34.359 195 101 11 7 187 88 269 1.26e-21 89.4
MS.gene31483.t1 MTR_2g090270 26.943 193 116 6 9 190 77 255 2.80e-20 85.5
MS.gene31483.t1 MTR_4g028640 32.195 205 100 11 1 188 77 259 1.45e-19 84.0
MS.gene31483.t1 MTR_0122s0020 27.461 193 115 7 9 190 83 261 2.23e-18 80.5
MS.gene31483.t1 MTR_2g090265 27.461 193 115 8 9 190 75 253 2.35e-18 80.5
MS.gene31483.t1 MTR_0809s0010 27.979 193 108 9 10 188 90 265 5.09e-14 68.9
MS.gene31483.t1 MTR_1g085365 50.000 56 28 0 137 192 4 59 1.03e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31483.t1 AT4G38210 69.634 191 58 0 2 192 64 254 5.90e-103 297
MS.gene31483.t1 AT3G03220 55.208 192 85 1 1 192 73 263 3.78e-80 239
MS.gene31483.t1 AT2G37640 52.604 192 91 0 1 192 44 235 5.38e-75 225
MS.gene31483.t1 AT3G55500 53.927 191 88 0 2 192 68 258 6.55e-75 226
MS.gene31483.t1 AT2G37640 52.604 192 91 0 1 192 69 260 8.13e-75 226
MS.gene31483.t1 AT5G02260 50.000 192 96 0 1 192 65 256 8.35e-75 226
MS.gene31483.t1 AT2G39700 51.832 191 92 0 2 192 65 255 1.89e-74 224
MS.gene31483.t1 AT5G05290 51.813 193 90 2 1 192 65 255 2.28e-73 222
MS.gene31483.t1 AT2G40610 53.125 192 87 2 2 192 64 253 4.31e-73 221
MS.gene31483.t1 AT5G56320 50.785 191 92 1 2 192 63 251 1.06e-72 220
MS.gene31483.t1 AT5G56320 50.785 191 92 1 2 192 63 251 1.06e-72 220
MS.gene31483.t1 AT5G56320 50.785 191 92 1 2 192 63 251 3.11e-72 221
MS.gene31483.t1 AT1G69530 53.927 191 86 1 2 192 61 249 7.70e-72 218
MS.gene31483.t1 AT1G69530 53.927 191 86 1 2 192 61 249 7.70e-72 218
MS.gene31483.t1 AT2G03090 51.832 191 90 1 2 192 64 252 1.70e-71 217
MS.gene31483.t1 AT1G69530 54.301 186 83 1 2 187 61 244 5.96e-70 214
MS.gene31483.t1 AT2G28950 50.521 192 95 0 1 192 64 255 7.64e-69 210
MS.gene31483.t1 AT1G26770 52.941 187 86 1 6 192 64 248 2.88e-66 204
MS.gene31483.t1 AT1G26770 52.105 190 89 1 3 192 71 258 4.60e-66 203
MS.gene31483.t1 AT5G39280 51.579 190 88 2 1 190 87 272 8.44e-65 201
MS.gene31483.t1 AT5G39290 52.632 190 86 2 1 190 91 276 2.50e-64 200
MS.gene31483.t1 AT5G39270 52.105 190 87 2 1 190 91 276 4.91e-64 199
MS.gene31483.t1 AT5G39300 50.526 190 90 2 1 190 88 273 1.03e-63 198
MS.gene31483.t1 AT3G29030 48.438 192 90 2 1 192 71 253 1.07e-63 197
MS.gene31483.t1 AT1G20190 47.619 189 94 3 3 188 2 188 2.43e-61 189
MS.gene31483.t1 AT4G01630 47.368 190 96 3 2 188 62 250 6.44e-61 190
MS.gene31483.t1 AT1G20190 47.619 189 94 3 3 188 61 247 7.24e-61 190
MS.gene31483.t1 AT1G62980 46.032 189 100 2 3 190 66 253 2.58e-59 186
MS.gene31483.t1 AT3G15370 48.731 197 89 6 2 192 61 251 2.05e-57 181
MS.gene31483.t1 AT5G39260 46.316 190 93 2 1 190 79 259 3.88e-57 181
MS.gene31483.t1 AT3G15370 48.731 197 89 6 2 192 91 281 9.03e-57 181
MS.gene31483.t1 AT1G69530 45.550 191 72 2 2 192 61 219 1.18e-55 176
MS.gene31483.t1 AT5G39310 46.073 191 98 3 1 190 123 309 2.84e-55 177
MS.gene31483.t1 AT1G69530 53.378 148 67 1 2 149 61 206 1.37e-54 174
MS.gene31483.t1 AT1G12560 43.386 189 104 3 1 188 70 256 9.96e-53 169
MS.gene31483.t1 AT4G28250 27.411 197 117 6 6 190 75 257 2.32e-20 85.9
MS.gene31483.t1 AT1G65680 30.052 193 107 7 10 188 90 268 4.88e-19 82.4
MS.gene31483.t1 AT4G28250 26.804 194 116 6 6 190 75 251 7.40e-18 79.3
MS.gene31483.t1 AT2G20750 28.788 198 116 7 6 190 79 264 1.07e-17 79.0
MS.gene31483.t1 AT2G45110 29.016 193 109 10 10 188 76 254 8.33e-16 73.6

Find 41 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCTGTGCTCCAAATTA+TGG 0.193089 2.4:+10573133 MS.gene31483:CDS
TATGGACTTTCATCTGATTA+TGG 0.229268 2.4:+10573151 MS.gene31483:CDS
GCTCCTGCAAACTGGCAATT+TGG 0.244244 2.4:+10574921 MS.gene31483:CDS
TCAGATGAAAGTCCATAATT+TGG 0.250351 2.4:-10573145 None:intergenic
GGATACCAATGGCAAGGAAT+TGG 0.318465 2.4:+10574802 MS.gene31483:CDS
GATACCAATGGCAAGGAATT+GGG 0.352310 2.4:+10574803 MS.gene31483:CDS
TGTCCAAATTGCCAGTTTGC+AGG 0.359469 2.4:-10574924 None:intergenic
CACATCTTATGGTGCTTGAT+TGG 0.373766 2.4:+10573082 MS.gene31483:CDS
AAAGTGAAGGGAACTAAAAC+TGG 0.381812 2.4:+10574777 MS.gene31483:CDS
CAAGGAATTGGGGACAAAAC+TGG 0.385261 2.4:+10574814 MS.gene31483:CDS
CAAGTCTTGATTACAAATGT+AGG 0.386343 2.4:+10574729 MS.gene31483:CDS
GATTATGGGATGCACAGTAC+TGG 0.405924 2.4:+10572992 None:intergenic
AAAACAACCTCTATCCTTTG+AGG 0.411228 2.4:+10574857 MS.gene31483:CDS
CAATTTGGACAAACATTTGA+AGG 0.422160 2.4:+10574936 MS.gene31483:CDS
TGTCCCCAATTCCTTGCCAT+TGG 0.454064 2.4:-10574807 None:intergenic
ACAATGTAGCTCCTGCAAAC+TGG 0.454872 2.4:+10574913 MS.gene31483:CDS
ATATAGTTCCAATTCAATAT+AGG 0.455636 2.4:+10573251 MS.gene31483:CDS
GATGTGTTGATCACATCTTA+TGG 0.481755 2.4:+10573071 MS.gene31483:CDS
GACATCTGAAAATGTTCACT+TGG 0.497515 2.4:-10573190 None:intergenic
AAGTCTTGATTACAAATGTA+GGG 0.503096 2.4:+10574730 MS.gene31483:CDS
CTTGATTACAAATGTAGGGT+TGG 0.514987 2.4:+10574734 MS.gene31483:CDS
AGGGTTAAATGCAAAAGAAC+TGG 0.532567 2.4:+10574666 MS.gene31483:intron
TTCAACAAAGGGAGTACTTG+TGG 0.535641 2.4:+10573031 MS.gene31483:CDS
TTTCATCTGATTATGGTGGA+TGG 0.551689 2.4:+10573158 MS.gene31483:CDS
ATTATGGGATGCACAGTACT+GGG 0.552361 2.4:+10572993 None:intergenic
ATTACAAATGTAGGGTTGGA+TGG 0.574951 2.4:+10574738 MS.gene31483:CDS
TGAAGGGAACTAAAACTGGA+TGG 0.585046 2.4:+10574781 MS.gene31483:CDS
ATACCAATGGCAAGGAATTG+GGG 0.588690 2.4:+10574804 MS.gene31483:CDS
TAGTTCCAATTCAATATAGG+AGG 0.594932 2.4:+10573254 MS.gene31483:CDS
ATAGTCACCTCAAAGGATAG+AGG 0.595630 2.4:-10574864 None:intergenic
GGACTTTCATCTGATTATGG+TGG 0.599208 2.4:+10573154 MS.gene31483:CDS
TGTAGGGTTGGATGGTGAAG+TGG 0.599601 2.4:+10574746 MS.gene31483:CDS
GGCTTGAAATTCACAATGAG+TGG 0.606308 2.4:+10574690 MS.gene31483:CDS
GTAACAGTAACAACTACAGA+AGG 0.615173 2.4:-10573109 None:intergenic
CTGGATGGATACCAATGGCA+AGG 0.617275 2.4:+10574796 MS.gene31483:CDS
TAAAACTGGATGGATACCAA+TGG 0.633872 2.4:+10574791 MS.gene31483:CDS
GTTAAATGCAAAAGAACTGG+TGG 0.636547 2.4:+10574669 MS.gene31483:CDS
TTTGAGGTGACTATCACAAG+TGG 0.637726 2.4:+10574873 MS.gene31483:CDS
ACTTGTGATAGTCACCTCAA+AGG 0.644655 2.4:-10574871 None:intergenic
AGTGGTTGCTGTAAAAGTGA+AGG 0.657922 2.4:+10574764 MS.gene31483:CDS
GTGGTTGCTGTAAAAGTGAA+GGG 0.675102 2.4:+10574765 MS.gene31483:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTTTTTTTAA+AGG - chr2.4:10573784-10573803 None:intergenic 0.0%
!!! AGTTATTATTTATTTTTTGA+AGG + chr2.4:10573665-10573684 MS.gene31483:intron 10.0%
!! ACATCAAAATTCTTTATATT+GGG + chr2.4:10574486-10574505 MS.gene31483:intron 15.0%
!! AATAAGCTAAAAATTGCTTA+TGG - chr2.4:10573354-10573373 None:intergenic 20.0%
!! ATAAGCTAAAAATTGCTTAT+GGG - chr2.4:10573353-10573372 None:intergenic 20.0%
!! ATATAGTTCCAATTCAATAT+AGG + chr2.4:10573251-10573270 MS.gene31483:CDS 20.0%
!! CATCAAAATTCTTTATATTG+GGG + chr2.4:10574487-10574506 MS.gene31483:intron 20.0%
!! GACATCAAAATTCTTTATAT+TGG + chr2.4:10574485-10574504 MS.gene31483:intron 20.0%
!! TCTTCTAACCTAAAAAAATA+GGG + chr2.4:10573860-10573879 MS.gene31483:intron 20.0%
!!! AATTTTTTAATAACGTATCG+AGG + chr2.4:10574263-10574282 MS.gene31483:intron 20.0%
!!! ATGCACTTATAGTTTTAAAT+TGG - chr2.4:10574516-10574535 None:intergenic 20.0%
!!! TAAGTCTTTTTTTAATGCTT+AGG + chr2.4:10574597-10574616 MS.gene31483:intron 20.0%
! AAGAAATAAAACTACAAGTC+TGG + chr2.4:10573813-10573832 MS.gene31483:intron 25.0%
! AAGTCTTGATTACAAATGTA+GGG + chr2.4:10574730-10574749 MS.gene31483:CDS 25.0%
! CAAATTACTTTAACCAAACA+GGG + chr2.4:10574572-10574591 MS.gene31483:intron 25.0%
! CGATATAAATTAGTGTTAAC+TGG + chr2.4:10573994-10574013 MS.gene31483:intron 25.0%
! CTCTTCTAACCTAAAAAAAT+AGG + chr2.4:10573859-10573878 MS.gene31483:intron 25.0%
! TATATTCTATCTAATTCGTG+CGG + chr2.4:10574126-10574145 MS.gene31483:intron 25.0%
!! AACTATATCAGATTTTCTCT+TGG - chr2.4:10573239-10573258 None:intergenic 25.0%
!! AATATGTAAGACAGAAGTAT+AGG - chr2.4:10573760-10573779 None:intergenic 25.0%
!! TTTTACCTCCTATATTGAAT+TGG - chr2.4:10573262-10573281 None:intergenic 25.0%
!!! GGGTTATACAAAGATTTTTT+TGG + chr2.4:10574625-10574644 MS.gene31483:intron 25.0%
AAAAAATGACTGATACGTGT+CGG + chr2.4:10573689-10573708 MS.gene31483:intron 30.0%
AAACTATGCTAGAGAACTTA+CGG - chr2.4:10573378-10573397 None:intergenic 30.0%
CAAGTCTTGATTACAAATGT+AGG + chr2.4:10574729-10574748 MS.gene31483:CDS 30.0%
CAATTTGGACAAACATTTGA+AGG + chr2.4:10574936-10574955 MS.gene31483:CDS 30.0%
CCAAATTACTTTAACCAAAC+AGG + chr2.4:10574571-10574590 MS.gene31483:intron 30.0%
CCTGTTTGGTTAAAGTAATT+TGG - chr2.4:10574574-10574593 None:intergenic 30.0%
GAAACAGAGTAGAATTCAAT+CGG - chr2.4:10573935-10573954 None:intergenic 30.0%
TAGTTCCAATTCAATATAGG+AGG + chr2.4:10573254-10573273 MS.gene31483:CDS 30.0%
TATGGACTTTCATCTGATTA+TGG + chr2.4:10573151-10573170 MS.gene31483:CDS 30.0%
TCAAAATTCACGATACGATA+CGG - chr2.4:10574289-10574308 None:intergenic 30.0%
TCAGATGAAAGTCCATAATT+TGG - chr2.4:10573148-10573167 None:intergenic 30.0%
! AGCACAATTTTGTTCAACAA+AGG + chr2.4:10573019-10573038 MS.gene31483:CDS 30.0%
! ATACGATACTTCACCATTTT+TGG - chr2.4:10573498-10573517 None:intergenic 30.0%
! GCACAATTTTGTTCAACAAA+GGG + chr2.4:10573020-10573039 MS.gene31483:CDS 30.0%
! TTTTTAATGCTTAGGCATCT+GGG + chr2.4:10574605-10574624 MS.gene31483:intron 30.0%
!!! ACGAGAAACCCTATTTTTTT+AGG - chr2.4:10573871-10573890 None:intergenic 30.0%
!!! TTTTTTAATGCTTAGGCATC+TGG + chr2.4:10574604-10574623 MS.gene31483:intron 30.0%
AAAAAGACTTAAGCCCTGTT+TGG - chr2.4:10574588-10574607 None:intergenic 35.0%
AAAACAACCTCTATCCTTTG+AGG + chr2.4:10574857-10574876 MS.gene31483:CDS 35.0%
AAAGTGAAGGGAACTAAAAC+TGG + chr2.4:10574777-10574796 MS.gene31483:CDS 35.0%
AGAGAATAGCTATTGCTATG+TGG - chr2.4:10573896-10573915 None:intergenic 35.0%
AGGGTTAAATGCAAAAGAAC+TGG + chr2.4:10574666-10574685 MS.gene31483:intron 35.0%
ATACGGTTGCAATGTTGTTA+AGG + chr2.4:10574461-10574480 MS.gene31483:intron 35.0%
ATTACAAATGTAGGGTTGGA+TGG + chr2.4:10574738-10574757 MS.gene31483:CDS 35.0%
CTTGATTACAAATGTAGGGT+TGG + chr2.4:10574734-10574753 MS.gene31483:CDS 35.0%
CTTTATATTGCAGCCAAATG+CGG + chr2.4:10574435-10574454 MS.gene31483:intron 35.0%
GACATCTGAAAATGTTCACT+TGG - chr2.4:10573193-10573212 None:intergenic 35.0%
GATTTCTGTGCTCCAAATTA+TGG + chr2.4:10573133-10573152 MS.gene31483:CDS 35.0%
GGAGTATAAGTAAGTTGTGT+CGG - chr2.4:10573733-10573752 None:intergenic 35.0%
GTAACAGTAACAACTACAGA+AGG - chr2.4:10573112-10573131 None:intergenic 35.0%
GTTAAATGCAAAAGAACTGG+TGG + chr2.4:10574669-10574688 MS.gene31483:CDS 35.0%
TAAAACTGGATGGATACCAA+TGG + chr2.4:10574791-10574810 MS.gene31483:CDS 35.0%
TAACAACATTGCAACCGTAT+AGG - chr2.4:10574461-10574480 None:intergenic 35.0%
TAGAATTCAATCGGTGGTAA+TGG - chr2.4:10573926-10573945 None:intergenic 35.0%
TTAAATTGTAGTTGCAGTCG+TGG + chr2.4:10574399-10574418 MS.gene31483:intron 35.0%
! GATGTGTTGATCACATCTTA+TGG + chr2.4:10573071-10573090 MS.gene31483:CDS 35.0%
! TAAGACAGAAGTATAGGTGT+CGG - chr2.4:10573754-10573773 None:intergenic 35.0%
! TTTCATCTGATTATGGTGGA+TGG + chr2.4:10573158-10573177 MS.gene31483:CDS 35.0%
!!! CTTCACCATTTTTGGAGTAT+CGG - chr2.4:10573490-10573509 None:intergenic 35.0%
!!! TTCACCATTTTTGGAGTATC+GGG - chr2.4:10573489-10573508 None:intergenic 35.0%
AAACAATGACCGATACGTGT+CGG + chr2.4:10573606-10573625 MS.gene31483:intron 40.0%
ACAGAGTAGAATTCAATCGG+TGG - chr2.4:10573932-10573951 None:intergenic 40.0%
ACTTGTGATAGTCACCTCAA+AGG - chr2.4:10574874-10574893 None:intergenic 40.0%
AGTGGTTGCTGTAAAAGTGA+AGG + chr2.4:10574764-10574783 MS.gene31483:CDS 40.0%
ATACCAATGGCAAGGAATTG+GGG + chr2.4:10574804-10574823 MS.gene31483:CDS 40.0%
ATAGTCACCTCAAAGGATAG+AGG - chr2.4:10574867-10574886 None:intergenic 40.0%
ATCGGTATCGTGTTAGGTAT+CGG + chr2.4:10574345-10574364 MS.gene31483:intron 40.0%
CACATCTTATGGTGCTTGAT+TGG + chr2.4:10573082-10573101 MS.gene31483:CDS 40.0%
CGCATTTGGCTGCAATATAA+AGG - chr2.4:10574437-10574456 None:intergenic 40.0%
GATACCAATGGCAAGGAATT+GGG + chr2.4:10574803-10574822 MS.gene31483:CDS 40.0%
GATACGATACGATACCGATA+CGG - chr2.4:10574328-10574347 None:intergenic 40.0%
GGACTTTCATCTGATTATGG+TGG + chr2.4:10573154-10573173 MS.gene31483:CDS 40.0%
GGCTTGAAATTCACAATGAG+TGG + chr2.4:10574690-10574709 MS.gene31483:CDS 40.0%
GTGGTTGCTGTAAAAGTGAA+GGG + chr2.4:10574765-10574784 MS.gene31483:CDS 40.0%
TGAAGGGAACTAAAACTGGA+TGG + chr2.4:10574781-10574800 MS.gene31483:CDS 40.0%
! GTATCGGTATCGTATCGTAT+CGG + chr2.4:10574327-10574346 MS.gene31483:intron 40.0%
! TACGCGTATCGGAAAAGTAT+CGG + chr2.4:10573559-10573578 MS.gene31483:intron 40.0%
! TACTTTTCCGATACGCGTAT+CGG - chr2.4:10573558-10573577 None:intergenic 40.0%
! TATCGTATCGGTATCGTGTT+AGG + chr2.4:10574339-10574358 MS.gene31483:intron 40.0%
! TTTGAGGTGACTATCACAAG+TGG + chr2.4:10574873-10574892 MS.gene31483:CDS 40.0%
!! TTCAACAAAGGGAGTACTTG+TGG + chr2.4:10573031-10573050 MS.gene31483:CDS 40.0%
!!! TCACCATTTTTGGAGTATCG+GGG - chr2.4:10573488-10573507 None:intergenic 40.0%
AAGCCCCGATACTCCAAAAA+TGG + chr2.4:10573482-10573501 MS.gene31483:intron 45.0%
ACAATGTAGCTCCTGCAAAC+TGG + chr2.4:10574913-10574932 MS.gene31483:CDS 45.0%
CAAGGAATTGGGGACAAAAC+TGG + chr2.4:10574814-10574833 MS.gene31483:CDS 45.0%
GCTGATGTGAAAGTTGTGCA+GGG + chr2.4:10574647-10574666 MS.gene31483:intron 45.0%
GGATACCAATGGCAAGGAAT+TGG + chr2.4:10574802-10574821 MS.gene31483:CDS 45.0%
TACTTCTCCGATACGCGTAT+CGG - chr2.4:10573639-10573658 None:intergenic 45.0%
TCGGTATCGTGTTAGGTATC+GGG + chr2.4:10574346-10574365 MS.gene31483:intron 45.0%
TGTCCAAATTGCCAGTTTGC+AGG - chr2.4:10574927-10574946 None:intergenic 45.0%
! ACTTTTCCGATACGCGTATC+GGG - chr2.4:10573557-10573576 None:intergenic 45.0%
! TACGCGTATCGGAGAAGTAT+CGG + chr2.4:10573640-10573659 MS.gene31483:intron 45.0%
! TATCGGTATCGGATACGTGT+CGG - chr2.4:10573521-10573540 None:intergenic 45.0%
!! ACGCGTATCGGAAAAGTATC+GGG + chr2.4:10573560-10573579 MS.gene31483:intron 45.0%
ACTTCTCCGATACGCGTATC+GGG - chr2.4:10573638-10573657 None:intergenic 50.0%
ATACGCGTATCGGGACGTAT+CGG - chr2.4:10573548-10573567 None:intergenic 50.0%
ATACGTCCCGATACGCGTAT+CGG + chr2.4:10573548-10573567 MS.gene31483:intron 50.0%
CTGGATGGATACCAATGGCA+AGG + chr2.4:10574796-10574815 MS.gene31483:CDS 50.0%
GCTCCTGCAAACTGGCAATT+TGG + chr2.4:10574921-10574940 MS.gene31483:CDS 50.0%
GGCTGATGTGAAAGTTGTGC+AGG + chr2.4:10574646-10574665 MS.gene31483:intron 50.0%
TGTAGGGTTGGATGGTGAAG+TGG + chr2.4:10574746-10574765 MS.gene31483:CDS 50.0%
TGTCCCCAATTCCTTGCCAT+TGG - chr2.4:10574810-10574829 None:intergenic 50.0%
! ATTTTCCCGCATCGCCGTAT+CGG + chr2.4:10574311-10574330 MS.gene31483:intron 50.0%
! CGGTATCGTGTTAGGTATCG+GGG + chr2.4:10574347-10574366 MS.gene31483:intron 50.0%
!! ACGCGTATCGGAGAAGTATC+GGG + chr2.4:10573641-10573660 MS.gene31483:intron 50.0%
ACGATACCGATACGGCGATG+CGG - chr2.4:10574320-10574339 None:intergenic 55.0%
GCAACCGTATAGGCCGCATT+TGG - chr2.4:10574451-10574470 None:intergenic 55.0%
GCAGCCAAATGCGGCCTATA+CGG + chr2.4:10574444-10574463 MS.gene31483:intron 55.0%
GGGACGTATCCGACACGTAT+CGG - chr2.4:10573618-10573637 None:intergenic 55.0%
TACGCGTATCGGGACGTATC+GGG - chr2.4:10573547-10573566 None:intergenic 55.0%
! GTATCGGGGCGTATCGGTAT+CGG - chr2.4:10573532-10573551 None:intergenic 55.0%
ACGCGTATCGGGACGTATCG+GGG - chr2.4:10573546-10573565 None:intergenic 60.0%
CGATACCGATACGGCGATGC+GGG - chr2.4:10574319-10574338 None:intergenic 60.0%
CGGGACGTATCGGGGCGTAT+CGG - chr2.4:10573538-10573557 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 10573001 10574971 10573001 ID=MS.gene31483
chr2.4 mRNA 10573001 10574971 10573001 ID=MS.gene31483.t1;Parent=MS.gene31483
chr2.4 exon 10573001 10573275 10573001 ID=MS.gene31483.t1.exon1;Parent=MS.gene31483.t1
chr2.4 CDS 10573001 10573275 10573001 ID=cds.MS.gene31483.t1;Parent=MS.gene31483.t1
chr2.4 exon 10574668 10574971 10574668 ID=MS.gene31483.t1.exon2;Parent=MS.gene31483.t1
chr2.4 CDS 10574668 10574971 10574668 ID=cds.MS.gene31483.t1;Parent=MS.gene31483.t1
Gene Sequence

>MS.gene31483

ATGCACAGTACTGGGTTAAGCACAATTTTGTTCAACAAAGGGAGTACTTGTGGTGCTTGTTATGAGATTAGATGTGTTGATCACATCTTATGGTGCTTGATTGGAAGTCCTTCTGTAGTTGTTACTGTTACAGATTTCTGTGCTCCAAATTATGGACTTTCATCTGATTATGGTGGATGGTGCAATTTTCCAAGTGAACATTTTCAGATGTCAGAAGCTGCATTTGCTAAAATTGCCAAGAGAAAATCTGATATAGTTCCAATTCAATATAGGAGGTAAAACTAAAATGTTTTAATGAGACATATTGATTGACTATTAGAGAGAGCTTATAGAAACAACTTATAAGATGCCCATAAGCAATTTTTAGCTTATTTCCGTAAGTTCTCTAGCATAGTTTATAAAACAACTTATAGCTTATGAAAACTATTTGACTTTATTTTATCTAACATTATAGAAATAGCTTATAAGCACTTAAACTCTGAAGCCCCGATACTCCAAAAATGGTGAAGTATCGTATCCGACACGTATCCGATACCGATACGCCCCGATACGTCCCGATACGCGTATCGGAAAAGTATCGGGCAATTAATATTTATTTTTTTGAAAAACAATGACCGATACGTGTCGGATACGTCCCGATACGCGTATCGGAGAAGTATCGGGCAGTTATTATTTATTTTTTGAAGGAAAAAAATGACTGATACGTGTCGGATGCGACTAACTTGTACTCCGACACAACTTACTTATACTCCGACACCTATACTTCTGTCTTACATATTTCCTTTAAAAAAAATAAAATAAAATAAAATAATAAGAAATAAAACTACAAGTCTGGCAGCACTATCAAAATCATATTGTCTCTTCTAACCTAAAAAAATAGGGTTTCTCGTCACCACATAGCAATAGCTATTCTCTCTTCTAACCATTACCACCGATTGAATTCTACTCTGTTTCTCTTCTCTCTAATGTTATGTTTCTTCTGCTGTTTGTTTTCGATATAAATTAGTGTTAACTGGTAAGTAGTCAACATTAGACAAAGATGTTCTTTTTTTTTTATAGTACTATAAATTAGTGTTAACTGTTAAGTAGTCAACATTAGACAAAGATGTTCTCGTTTTATAGTGCTATATTCTATCTAATTCGTGCGGAAAAAATATGTAATTGTCACTTGTTTTGATCATTTTCATTAATTTGAATGTTTGTTTATTATCATTTTTAGTTATGTCTATACATTGTGCACTTATACTATTAATTTTAAATTTAATTTTTTAATAACGTATCGAGGCCGTATCGTATCGTGAATTTTGAAAATTTTCCCGCATCGCCGTATCGGTATCGTATCGTATCGGTATCGTGTTAGGTATCGGGGCTTCATAGCACTTAAATGATAAAAATATTTTAAATTGTAGTTGCAGTCGTGGTTACTCTGAGAACCTTTATATTGCAGCCAAATGCGGCCTATACGGTTGCAATGTTGTTAAGGAGACATCAAAATTCTTTATATTGGGGCTGCCAATTTAAAACTATAAGTGCATATGTTATAAGTTCTTAATAAATCTGTTTACTTTAACCAAATTACTTTAACCAAACAGGGCTTAAGTCTTTTTTTAATGCTTAGGCATCTGGGTTATACAAAGATTTTTTTGGCTGATGTGAAAGTTGTGCAGGGTTAAATGCAAAAGAACTGGTGGCTTGAAATTCACAATGAGTGGAAGTGATCATTTCTATCAAGTCTTGATTACAAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTAAAAGTGAAGGGAACTAAAACTGGATGGATACCAATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAATCTTCAAAAACAACCTCTATCCTTTGAGGTGACTATCACAAGTGGAAAAACAATCACATCTTACAATGTAGCTCCTGCAAACTGGCAATTTGGACAAACATTTGAAGGTAAACAATTCTAG
Protein sequence

>MS.gene31483.t1

MHSTGLSTILFNKGSTCGACYEIRCVDHILWCLIGSPSVVVTVTDFCAPNYGLSSDYGGWCNFPSEHFQMSEAAFAKIAKRKSDIVPIQYRRVKCKRTGGLKFTMSGSDHFYQVLITNVGLDGEVVAVKVKGTKTGWIPMARNWGQNWHCNVNLQKQPLSFEVTITSGKTITSYNVAPANWQFGQTFEGKQF