AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32048.t1 MTR_1g072190 98.684 380 5 0 1 380 1 380 0.0 777
MS.gene32048.t1 MTR_7g094940 72.178 381 98 4 1 375 1 379 0.0 544
MS.gene32048.t1 MTR_1g095165 40.217 368 178 6 29 356 74 439 1.97e-88 275
MS.gene32048.t1 MTR_2g029510 37.681 414 189 11 1 363 24 419 1.51e-71 230
MS.gene32048.t1 MTR_0368s0010 44.314 255 111 5 131 356 23 275 5.67e-64 206
MS.gene32048.t1 MTR_5g017670 27.687 307 193 12 32 313 18 320 2.02e-27 112
MS.gene32048.t1 MTR_5g017680 27.168 346 205 13 32 340 12 347 2.27e-26 109
MS.gene32048.t1 MTR_8g007090 27.463 335 211 11 32 343 34 359 2.65e-26 109
MS.gene32048.t1 MTR_1g019940 24.927 341 219 11 32 340 23 358 8.03e-26 108
MS.gene32048.t1 MTR_8g007095 27.164 335 212 11 32 343 34 359 4.15e-25 106
MS.gene32048.t1 MTR_1g019940 24.927 341 217 12 32 340 23 356 2.54e-24 103
MS.gene32048.t1 MTR_8g007065 29.218 243 151 7 32 263 34 266 2.76e-23 100
MS.gene32048.t1 MTR_3g101410 26.667 345 206 11 32 340 22 355 9.93e-23 99.0
MS.gene32048.t1 MTR_3g101400 26.254 339 215 11 32 340 22 355 2.38e-22 98.2
MS.gene32048.t1 MTR_8g007040 26.384 307 195 9 32 317 34 330 3.18e-22 97.8
MS.gene32048.t1 MTR_8g007140 25.574 305 198 10 54 342 53 344 1.89e-20 92.4
MS.gene32048.t1 MTR_8g007125 26.486 370 230 12 32 378 34 384 2.35e-19 89.4
MS.gene32048.t1 MTR_1g019940 24.537 216 135 7 152 340 25 239 1.13e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32048.t1 AT3G63200 70.725 386 103 5 1 380 3 384 0.0 557
MS.gene32048.t1 AT2G39220 43.017 358 172 5 29 356 107 462 3.03e-90 280
MS.gene32048.t1 AT3G54950 40.741 405 182 9 1 356 54 449 1.80e-87 273
MS.gene32048.t1 AT4G29800 39.892 371 170 9 32 356 123 486 1.28e-77 248
MS.gene32048.t1 AT4G29800 39.247 372 172 9 32 356 123 487 5.46e-76 244
MS.gene32048.t1 AT4G37060 33.333 276 169 8 32 295 21 293 2.40e-40 147
MS.gene32048.t1 AT4G37060 30.719 306 168 9 32 295 21 324 3.18e-36 137
MS.gene32048.t1 AT4G37070 29.537 281 173 7 32 295 21 293 3.92e-33 127
MS.gene32048.t1 AT4G37070 29.537 281 173 7 32 295 21 293 3.92e-33 127
MS.gene32048.t1 AT4G37070 28.488 344 203 11 32 341 21 355 5.71e-33 127
MS.gene32048.t1 AT4G37070 28.114 281 166 7 32 295 21 282 5.55e-29 116
MS.gene32048.t1 AT5G43590 26.879 346 218 9 32 349 16 354 4.28e-27 111
MS.gene32048.t1 AT5G43590 26.879 346 218 9 32 349 83 421 9.07e-27 111
MS.gene32048.t1 AT4G37050 27.368 285 161 10 49 298 54 327 8.15e-24 102
MS.gene32048.t1 AT2G26560 27.129 317 183 11 32 313 21 324 1.33e-23 101

Find 95 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCACGGTTGTTGACTTTA+AGG 0.194806 1.2:+55185619 MS.gene32048:CDS
CACGTGCTCAACGCCGTTAA+TGG 0.278448 1.2:+55186001 MS.gene32048:CDS
AAGCCATTTGTGTTCGAGTT+TGG 0.303079 1.2:-55185211 None:intergenic
GTGCAACGTCTTGTTGCTAA+TGG 0.308645 1.2:+55186376 MS.gene32048:CDS
GAACGGCGTGGAGGATCTTT+TGG 0.314436 1.2:+55185923 MS.gene32048:CDS
AAGTGAAGAGGAAGTGTTAA+AGG 0.324094 1.2:+55186276 MS.gene32048:CDS
TACGGATTACGTCAGAATTC+AGG 0.347197 1.2:+55186094 MS.gene32048:CDS
TTGTAACAGGCGTTTGGTTT+GGG 0.353889 1.2:+55186253 MS.gene32048:intron
TTTGTAACAGGCGTTTGGTT+TGG 0.357424 1.2:+55186252 MS.gene32048:intron
CTCTACAAACGCAAATCAAC+CGG 0.385338 1.2:+55185516 MS.gene32048:CDS
AGAATGCGTTTCCAAGCATT+TGG 0.389464 1.2:-55186061 None:intergenic
TTCACGGTTGTTGACTTTAA+GGG 0.393190 1.2:+55185620 MS.gene32048:CDS
TGAATTCAAAAGGTTTGAAA+TGG 0.393286 1.2:-55185785 None:intergenic
TTCGACATTGTCGCTGGTAC+CGG 0.395862 1.2:+55185387 MS.gene32048:CDS
GAGCGTGAGGATCGGAGGTT+TGG 0.410241 1.2:-55185350 None:intergenic
TCAAAAGGTTTGAAATGGTT+AGG 0.425002 1.2:-55185780 None:intergenic
TGATTTGCGTTTGTAGAGTT+CGG 0.426596 1.2:-55185511 None:intergenic
GCTGTTACATCTCTCGCTAA+TGG 0.433412 1.2:+55186436 MS.gene32048:CDS
TTGAATTCACTTCCGTCGAC+GGG 0.443523 1.2:+55185799 MS.gene32048:CDS
GAGTATTTCGTCGCCGGTGC+CGG 0.444213 1.2:+55185538 MS.gene32048:CDS
AATGCTGAGAATGCGTGTTT+TGG 0.445862 1.2:-55185259 None:intergenic
TTGGTTCTTTCATTGGGAAA+CGG 0.453399 1.2:+55185942 MS.gene32048:CDS
ATGGTTGACATTGTTCTTGA+CGG 0.456691 1.2:+55186020 MS.gene32048:CDS
CATGACTAAACCACCGTCTA+CGG 0.459167 1.2:-55185838 None:intergenic
CAAGGACTGAACGGTGGACT+TGG 0.463958 1.2:-55186403 None:intergenic
AGAACAATGTCAACCATTAA+CGG 0.466581 1.2:-55186014 None:intergenic
TGCTTGGAAACGCATTCTGT+TGG 0.468643 1.2:+55186066 MS.gene32048:CDS
GAGACTAACGGAAACAGAAT+CGG 0.469947 1.2:+55186346 MS.gene32048:CDS
TCTCCAAACTCGAACACAAA+TGG 0.477489 1.2:+55185208 MS.gene32048:CDS
GAGGAAGTGTTAAAGGAAAG+AGG 0.479450 1.2:+55186283 MS.gene32048:CDS
TCGTTAGAAAAGAAGATTCA+CGG 0.480915 1.2:+55185604 MS.gene32048:CDS
GGGTTGGAGTCGTTACCGTT+TGG 0.482615 1.2:+55186304 MS.gene32048:CDS
TCGACGGAAGTGAATTCAAA+AGG 0.487749 1.2:-55185795 None:intergenic
ATTGTCGCTGGTACCGGCAT+TGG 0.490072 1.2:+55185393 MS.gene32048:CDS
GATTTCTTCGACATTGTCGC+TGG 0.493168 1.2:+55185381 MS.gene32048:CDS
CAGAGTTCGAAGTTGAAGCT+AGG 0.494303 1.2:-55185729 None:intergenic
GAGACGATTGACCAAATGCT+TGG 0.495301 1.2:+55186050 MS.gene32048:CDS
TTGGAGTCGTTACCGTTTGG+AGG 0.498554 1.2:+55186307 MS.gene32048:CDS
ATCACCGCAGCCGATGCATT+CGG 0.502588 1.2:+55185435 MS.gene32048:CDS
TAAAGCAGCGCCGGCTACAA+TGG 0.502613 1.2:-55185301 None:intergenic
TCCTCCACGCCGTTCACCGT+TGG 0.502660 1.2:-55185915 None:intergenic
AGGAAGTGTTAAAGGAAAGA+GGG 0.506637 1.2:+55186284 MS.gene32048:CDS
TTTGAATTCACTTCCGTCGA+CGG 0.509205 1.2:+55185798 MS.gene32048:CDS
AACATGCGTGACTGCGGCGG+CGG 0.512596 1.2:-55185871 None:intergenic
AGCAAGGATAGCGCCAATGC+CGG 0.513559 1.2:-55185406 None:intergenic
GGAACAACCGCCATTGTAGC+CGG 0.514821 1.2:+55185291 MS.gene32048:CDS
TTGAAGAGAATCTCCGGCAC+CGG 0.522502 1.2:-55185551 None:intergenic
CTAGCTTCAACTTCGAACTC+TGG 0.523183 1.2:+55185730 MS.gene32048:CDS
CGTTACCGTTTGGAGGGAAA+CGG 0.524114 1.2:+55186314 MS.gene32048:CDS
TGGAGGGAAACGGTTATTGA+CGG 0.527447 1.2:+55186324 MS.gene32048:CDS
ACACGCATTCTCAGCATTGA+CGG 0.529562 1.2:+55185264 MS.gene32048:CDS
CGCATTCTGTTGGAATCGTA+CGG 0.537202 1.2:+55186076 MS.gene32048:CDS
AGTGTTAAAGGAAAGAGGGT+TGG 0.537433 1.2:+55186288 MS.gene32048:CDS
TGTTCTTTGAAGAGAATCTC+CGG 0.539079 1.2:-55185557 None:intergenic
ACCTCTTGCTCCGCCGTAGA+CGG 0.551267 1.2:+55185825 MS.gene32048:CDS
GTTTGGTTTGGGAAGTGAAG+AGG 0.553372 1.2:+55186264 MS.gene32048:CDS
TAGGCGTTGCTGACGTGGCG+CGG 0.557272 1.2:-55185761 None:intergenic
AAGCATTTGGTCAATCGTCT+CGG 0.559192 1.2:-55186048 None:intergenic
CGGTTATTGACGGAGACTAA+CGG 0.566958 1.2:+55186334 MS.gene32048:CDS
CGAATGGAGCTGAACTCTTG+AGG 0.567430 1.2:-55185677 None:intergenic
ACCGTCTACGGCGGAGCAAG+AGG 0.568932 1.2:-55185826 None:intergenic
TGCGTGACTGCGGCGGCGGT+AGG 0.569292 1.2:-55185867 None:intergenic
TGGAGTCGTTACCGTTTGGA+GGG 0.569499 1.2:+55186308 MS.gene32048:CDS
AAATCAACGACGTGAGCGTG+AGG 0.572164 1.2:-55185363 None:intergenic
TTTCTCTGTGATAATACGAA+CGG 0.572707 1.2:-55185484 None:intergenic
GACGGATCTGATCTTCGAGA+TGG 0.576098 1.2:-55185326 None:intergenic
AACGACGTGAGCGTGAGGAT+CGG 0.580123 1.2:-55185358 None:intergenic
ATGGTTAGGCGTTGCTGACG+TGG 0.581855 1.2:-55185766 None:intergenic
TCCACCGTTCAGTCCTTGCA+AGG 0.582711 1.2:+55186408 MS.gene32048:CDS
CAACCGGAGTATTTCGTCGC+CGG 0.582946 1.2:+55185532 MS.gene32048:CDS
ATTCTCAGCATTGACGGCGG+AGG 0.596923 1.2:+55185270 MS.gene32048:CDS
GAATCCTTGCAAGGACTGAA+CGG 0.599507 1.2:-55186412 None:intergenic
AGCAGCGCCGGCTACAATGG+CGG 0.599958 1.2:-55185298 None:intergenic
AATAACCGTTTCCCTCCAAA+CGG 0.603874 1.2:-55186319 None:intergenic
TCAAAGCAAGGTATAAGCAA+TGG 0.604770 1.2:-55185654 None:intergenic
GCTAGGAGATTCCGTTGCGT+CGG 0.605268 1.2:-55185712 None:intergenic
GAGATTCTCTTCAAAGAACA+TGG 0.612147 1.2:+55185560 MS.gene32048:CDS
CATTGGTCTACCGAATGCAT+CGG 0.613833 1.2:-55185445 None:intergenic
GACGTGAGCGTGAGGATCGG+AGG 0.616538 1.2:-55185355 None:intergenic
TCTTGCTCCGCCGTAGACGG+TGG 0.618695 1.2:+55185828 MS.gene32048:CDS
TCTACCGAATGCATCGGCTG+CGG 0.618791 1.2:-55185439 None:intergenic
GTAACAGCTGAATCCTTGCA+AGG 0.619384 1.2:-55186421 None:intergenic
TCCTTGCAAGGACTGAACGG+TGG 0.622124 1.2:-55186409 None:intergenic
GATTCTCTAGCAGTGTACAT+TGG 0.627089 1.2:-55185462 None:intergenic
GAGATGGATTAAAGCAGCGC+CGG 0.632030 1.2:-55185310 None:intergenic
AAGAACATGCGTGACTGCGG+CGG 0.648230 1.2:-55185874 None:intergenic
TTAACGGCGTTGAGCACGTG+CGG 0.648903 1.2:-55185998 None:intergenic
GAGGATCGGAGGTTTGGAGA+CGG 0.648909 1.2:-55185344 None:intergenic
CTGCGGTGATCATTGCAGCA+AGG 0.658132 1.2:-55185422 None:intergenic
GACTAAACCACCGTCTACGG+CGG 0.660165 1.2:-55185835 None:intergenic
TCCAACGGTGAACGGCGTGG+AGG 0.667115 1.2:+55185914 MS.gene32048:CDS
GTGAAGAACATGCGTGACTG+CGG 0.680632 1.2:-55185877 None:intergenic
GCACCGGCGACGAAATACTC+CGG 0.681135 1.2:-55185535 None:intergenic
CGCATTCTCAGCATTGACGG+CGG 0.683765 1.2:+55185267 MS.gene32048:CDS
GAACTCTTGAGGTCAAAGCA+AGG 0.690315 1.2:-55185666 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAATTCAAAAGGTTTGAAA+TGG - chr1.2:55185788-55185807 None:intergenic 25.0%
AGAACAATGTCAACCATTAA+CGG - chr1.2:55186017-55186036 None:intergenic 30.0%
ATACAGTTACCGTTACTTAA+CGG + chr1.2:55186222-55186241 MS.gene32048:intron 30.0%
TCGTTAGAAAAGAAGATTCA+CGG + chr1.2:55185604-55185623 MS.gene32048:CDS 30.0%
TTTCTCTGTGATAATACGAA+CGG - chr1.2:55185487-55185506 None:intergenic 30.0%
! TCAAAAGGTTTGAAATGGTT+AGG - chr1.2:55185783-55185802 None:intergenic 30.0%
!!! GATCTTTTGGTTCTTTCATT+GGG + chr1.2:55185936-55185955 MS.gene32048:CDS 30.0%
AAACAAACGCCGTTAAGTAA+CGG - chr1.2:55186234-55186253 None:intergenic 35.0%
ATGGTTGACATTGTTCTTGA+CGG + chr1.2:55186020-55186039 MS.gene32048:CDS 35.0%
GAGATTCTCTTCAAAGAACA+TGG + chr1.2:55185560-55185579 MS.gene32048:CDS 35.0%
TCAAAGCAAGGTATAAGCAA+TGG - chr1.2:55185657-55185676 None:intergenic 35.0%
! CAACAAACGTGATTTTCCAA+CGG + chr1.2:55185899-55185918 MS.gene32048:CDS 35.0%
! TGATTTGCGTTTGTAGAGTT+CGG - chr1.2:55185514-55185533 None:intergenic 35.0%
! TGTTCTTTGAAGAGAATCTC+CGG - chr1.2:55185560-55185579 None:intergenic 35.0%
! TTGGTTCTTTCATTGGGAAA+CGG + chr1.2:55185942-55185961 MS.gene32048:CDS 35.0%
!! AAGTGAAGAGGAAGTGTTAA+AGG + chr1.2:55186276-55186295 MS.gene32048:CDS 35.0%
!! AGGAAGTGTTAAAGGAAAGA+GGG + chr1.2:55186284-55186303 MS.gene32048:CDS 35.0%
!! ATTCACGGTTGTTGACTTTA+AGG + chr1.2:55185619-55185638 MS.gene32048:CDS 35.0%
!! TTCACGGTTGTTGACTTTAA+GGG + chr1.2:55185620-55185639 MS.gene32048:CDS 35.0%
!!! GGATCTTTTGGTTCTTTCAT+TGG + chr1.2:55185935-55185954 MS.gene32048:CDS 35.0%
!!! TTTGTTTTGTAACAGGCGTT+TGG + chr1.2:55186247-55186266 MS.gene32048:intron 35.0%
AAGCATTTGGTCAATCGTCT+CGG - chr1.2:55186051-55186070 None:intergenic 40.0%
AATAACCGTTTCCCTCCAAA+CGG - chr1.2:55186322-55186341 None:intergenic 40.0%
AGAATGCGTTTCCAAGCATT+TGG - chr1.2:55186064-55186083 None:intergenic 40.0%
AGTGTTAAAGGAAAGAGGGT+TGG + chr1.2:55186288-55186307 MS.gene32048:CDS 40.0%
CTCTACAAACGCAAATCAAC+CGG + chr1.2:55185516-55185535 MS.gene32048:CDS 40.0%
GAGACTAACGGAAACAGAAT+CGG + chr1.2:55186346-55186365 MS.gene32048:CDS 40.0%
GATTCTCTAGCAGTGTACAT+TGG - chr1.2:55185465-55185484 None:intergenic 40.0%
TCGACGGAAGTGAATTCAAA+AGG - chr1.2:55185798-55185817 None:intergenic 40.0%
TCTCCAAACTCGAACACAAA+TGG + chr1.2:55185208-55185227 MS.gene32048:CDS 40.0%
TTTGAATTCACTTCCGTCGA+CGG + chr1.2:55185798-55185817 MS.gene32048:CDS 40.0%
TTTGTAACAGGCGTTTGGTT+TGG + chr1.2:55186252-55186271 MS.gene32048:intron 40.0%
! AAGCCATTTGTGTTCGAGTT+TGG - chr1.2:55185214-55185233 None:intergenic 40.0%
! AATGCTGAGAATGCGTGTTT+TGG - chr1.2:55185262-55185281 None:intergenic 40.0%
! TACGGATTACGTCAGAATTC+AGG + chr1.2:55186094-55186113 MS.gene32048:CDS 40.0%
! TTGTAACAGGCGTTTGGTTT+GGG + chr1.2:55186253-55186272 MS.gene32048:intron 40.0%
!! GAGGAAGTGTTAAAGGAAAG+AGG + chr1.2:55186283-55186302 MS.gene32048:CDS 40.0%
!!! AACGGCGTTTGTTTTGTAAC+AGG + chr1.2:55186240-55186259 MS.gene32048:intron 40.0%
CAGAGTTCGAAGTTGAAGCT+AGG - chr1.2:55185732-55185751 None:intergenic 45.0%
CATGACTAAACCACCGTCTA+CGG - chr1.2:55185841-55185860 None:intergenic 45.0%
CGCATTCTGTTGGAATCGTA+CGG + chr1.2:55186076-55186095 MS.gene32048:CDS 45.0%
CGGTTATTGACGGAGACTAA+CGG + chr1.2:55186334-55186353 MS.gene32048:CDS 45.0%
CTAGCTTCAACTTCGAACTC+TGG + chr1.2:55185730-55185749 MS.gene32048:CDS 45.0%
GAACTCTTGAGGTCAAAGCA+AGG - chr1.2:55185669-55185688 None:intergenic 45.0%
GAATCCTTGCAAGGACTGAA+CGG - chr1.2:55186415-55186434 None:intergenic 45.0%
GAGACGATTGACCAAATGCT+TGG + chr1.2:55186050-55186069 MS.gene32048:CDS 45.0%
GATTTCTTCGACATTGTCGC+TGG + chr1.2:55185381-55185400 MS.gene32048:CDS 45.0%
GCTGTTACATCTCTCGCTAA+TGG + chr1.2:55186436-55186455 MS.gene32048:CDS 45.0%
GTAACAGCTGAATCCTTGCA+AGG - chr1.2:55186424-55186443 None:intergenic 45.0%
TGCTTGGAAACGCATTCTGT+TGG + chr1.2:55186066-55186085 MS.gene32048:CDS 45.0%
TGGAGGGAAACGGTTATTGA+CGG + chr1.2:55186324-55186343 MS.gene32048:CDS 45.0%
TTGAATTCACTTCCGTCGAC+GGG + chr1.2:55185799-55185818 MS.gene32048:CDS 45.0%
! ACACGCATTCTCAGCATTGA+CGG + chr1.2:55185264-55185283 MS.gene32048:CDS 45.0%
! CATTGGTCTACCGAATGCAT+CGG - chr1.2:55185448-55185467 None:intergenic 45.0%
! CGTGATTTTCCAACGGTGAA+CGG + chr1.2:55185906-55185925 MS.gene32048:CDS 45.0%
! GTGCAACGTCTTGTTGCTAA+TGG + chr1.2:55186376-55186395 MS.gene32048:CDS 45.0%
! TCGGCTCGTGAAAAAACGAA+TGG - chr1.2:55185696-55185715 None:intergenic 45.0%
!! GTTTGGTTTGGGAAGTGAAG+AGG + chr1.2:55186264-55186283 MS.gene32048:CDS 45.0%
AAATCAACGACGTGAGCGTG+AGG - chr1.2:55185366-55185385 None:intergenic 50.0%
CGAATGGAGCTGAACTCTTG+AGG - chr1.2:55185680-55185699 None:intergenic 50.0%
CGTTACCGTTTGGAGGGAAA+CGG + chr1.2:55186314-55186333 MS.gene32048:CDS 50.0%
GACGGATCTGATCTTCGAGA+TGG - chr1.2:55185329-55185348 None:intergenic 50.0%
GTGAAGAACATGCGTGACTG+CGG - chr1.2:55185880-55185899 None:intergenic 50.0%
TGGAGTCGTTACCGTTTGGA+GGG + chr1.2:55186308-55186327 MS.gene32048:CDS 50.0%
TTCGACATTGTCGCTGGTAC+CGG + chr1.2:55185387-55185406 MS.gene32048:CDS 50.0%
TTGAAGAGAATCTCCGGCAC+CGG - chr1.2:55185554-55185573 None:intergenic 50.0%
TTGGAGTCGTTACCGTTTGG+AGG + chr1.2:55186307-55186326 MS.gene32048:CDS 50.0%
! TTTTTCACGAGCCGACGCAA+CGG + chr1.2:55185701-55185720 MS.gene32048:CDS 50.0%
!! GAGATGGATTAAAGCAGCGC+CGG - chr1.2:55185313-55185332 None:intergenic 50.0%
AACGACGTGAGCGTGAGGAT+CGG - chr1.2:55185361-55185380 None:intergenic 55.0%
AAGAACATGCGTGACTGCGG+CGG - chr1.2:55185877-55185896 None:intergenic 55.0%
AGCAAGGATAGCGCCAATGC+CGG - chr1.2:55185409-55185428 None:intergenic 55.0%
ATCACCGCAGCCGATGCATT+CGG + chr1.2:55185435-55185454 MS.gene32048:CDS 55.0%
CACGTGCTCAACGCCGTTAA+TGG + chr1.2:55186001-55186020 MS.gene32048:CDS 55.0%
CTGCGGTGATCATTGCAGCA+AGG - chr1.2:55185425-55185444 None:intergenic 55.0%
GACTAAACCACCGTCTACGG+CGG - chr1.2:55185838-55185857 None:intergenic 55.0%
GAGGATCGGAGGTTTGGAGA+CGG - chr1.2:55185347-55185366 None:intergenic 55.0%
GCTAGGAGATTCCGTTGCGT+CGG - chr1.2:55185715-55185734 None:intergenic 55.0%
GGAACAACCGCCATTGTAGC+CGG + chr1.2:55185291-55185310 MS.gene32048:CDS 55.0%
GGGTTGGAGTCGTTACCGTT+TGG + chr1.2:55186304-55186323 MS.gene32048:CDS 55.0%
TCCACCGTTCAGTCCTTGCA+AGG + chr1.2:55186408-55186427 MS.gene32048:CDS 55.0%
TCCTTGCAAGGACTGAACGG+TGG - chr1.2:55186412-55186431 None:intergenic 55.0%
! ATGGTTAGGCGTTGCTGACG+TGG - chr1.2:55185769-55185788 None:intergenic 55.0%
! CAACCGGAGTATTTCGTCGC+CGG + chr1.2:55185532-55185551 MS.gene32048:CDS 55.0%
! CAAGGACTGAACGGTGGACT+TGG - chr1.2:55186406-55186425 None:intergenic 55.0%
! GAACGGCGTGGAGGATCTTT+TGG + chr1.2:55185923-55185942 MS.gene32048:CDS 55.0%
! GCAAGAGGTTTTCCCGTCGA+CGG - chr1.2:55185814-55185833 None:intergenic 55.0%
! TTAACGGCGTTGAGCACGTG+CGG - chr1.2:55186001-55186020 None:intergenic 55.0%
! TTTTCCAACGGTGAACGGCG+TGG + chr1.2:55185911-55185930 MS.gene32048:CDS 55.0%
!! ATTCTCAGCATTGACGGCGG+AGG + chr1.2:55185270-55185289 MS.gene32048:CDS 55.0%
!! ATTGTCGCTGGTACCGGCAT+TGG + chr1.2:55185393-55185412 MS.gene32048:CDS 55.0%
!! CGCATTCTCAGCATTGACGG+CGG + chr1.2:55185267-55185286 MS.gene32048:CDS 55.0%
!! TAAAGCAGCGCCGGCTACAA+TGG - chr1.2:55185304-55185323 None:intergenic 55.0%
!! TCTACCGAATGCATCGGCTG+CGG - chr1.2:55185442-55185461 None:intergenic 55.0%
ACCTCTTGCTCCGCCGTAGA+CGG + chr1.2:55185825-55185844 MS.gene32048:CDS 60.0%
GAGCGTGAGGATCGGAGGTT+TGG - chr1.2:55185353-55185372 None:intergenic 60.0%
GAGTATTTCGTCGCCGGTGC+CGG + chr1.2:55185538-55185557 MS.gene32048:CDS 60.0%
! GCACCGGCGACGAAATACTC+CGG - chr1.2:55185538-55185557 None:intergenic 60.0%
AACATGCGTGACTGCGGCGG+CGG - chr1.2:55185874-55185893 None:intergenic 65.0%
ACCGTCTACGGCGGAGCAAG+AGG - chr1.2:55185829-55185848 None:intergenic 65.0%
GACGTGAGCGTGAGGATCGG+AGG - chr1.2:55185358-55185377 None:intergenic 65.0%
TCCAACGGTGAACGGCGTGG+AGG + chr1.2:55185914-55185933 MS.gene32048:CDS 65.0%
TCCTCCACGCCGTTCACCGT+TGG - chr1.2:55185918-55185937 None:intergenic 65.0%
TCTTGCTCCGCCGTAGACGG+TGG + chr1.2:55185828-55185847 MS.gene32048:CDS 65.0%
! TAGGCGTTGCTGACGTGGCG+CGG - chr1.2:55185764-55185783 None:intergenic 65.0%
!! AGCAGCGCCGGCTACAATGG+CGG - chr1.2:55185301-55185320 None:intergenic 65.0%
TGCGTGACTGCGGCGGCGGT+AGG - chr1.2:55185870-55185889 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 55185177 55186465 55185177 ID=MS.gene32048
chr1.2 mRNA 55185177 55186465 55185177 ID=MS.gene32048.t1;Parent=MS.gene32048
chr1.2 exon 55185177 55186115 55185177 ID=MS.gene32048.t1.exon1;Parent=MS.gene32048.t1
chr1.2 CDS 55185177 55186115 55185177 ID=cds.MS.gene32048.t1;Parent=MS.gene32048.t1
chr1.2 exon 55186262 55186465 55186262 ID=MS.gene32048.t1.exon2;Parent=MS.gene32048.t1
chr1.2 CDS 55186262 55186465 55186262 ID=cds.MS.gene32048.t1;Parent=MS.gene32048.t1
Gene Sequence

>MS.gene32048

ATGGATCTCACTAAAGTCACACTAGAAATCTTCTCCAAACTCGAACACAAATGGCTTTCTCATTGCAAAGAAGAAACAACTACCAAAACACGCATTCTCAGCATTGACGGCGGAGGAACAACCGCCATTGTAGCCGGCGCTGCTTTAATCCATCTCGAAGATCAGATCCGTCTCCAAACCTCCGATCCTCACGCTCACGTCGTTGATTTCTTCGACATTGTCGCTGGTACCGGCATTGGCGCTATCCTTGCTGCAATGATCACCGCAGCCGATGCATTCGGTAGACCAATGTACACTGCTAGAGAATCCGTTCGTATTATCACAGAGAAAAACTCCGAACTCTACAAACGCAAATCAACCGGAGTATTTCGTCGCCGGTGCCGGAGATTCTCTTCAAAGAACATGGATAACGTGTTGAAAGAAGTGTTCGTTAGAAAAGAAGATTCACGGTTGTTGACTTTAAGGGACACGTGTAAACCATTGCTTATACCTTGCTTTGACCTCAAGAGTTCAGCTCCATTCGTTTTTTCACGAGCCGACGCAACGGAATCTCCTAGCTTCAACTTCGAACTCTGGAAAGTATGCCGCGCCACGTCAGCAACGCCTAACCATTTCAAACCTTTTGAATTCACTTCCGTCGACGGGAAAACCTCTTGCTCCGCCGTAGACGGTGGTTTAGTCATGAACAATCCTACCGCCGCCGCAGTCACGCATGTTCTTCACAACAAACGTGATTTTCCAACGGTGAACGGCGTGGAGGATCTTTTGGTTCTTTCATTGGGAAACGGATCATCGAATTCGAAGACACGTGAGAACGAAAACCGCACGTGCTCAACGCCGTTAATGGTTGACATTGTTCTTGACGGCGTTTCCGAGACGATTGACCAAATGCTTGGAAACGCATTCTGTTGGAATCGTACGGATTACGTCAGAATTCAGGTACGTTAATTTTTATTTTTACTTTTTTCTTCTCTCTGTTTCTCTGATATCTGCATTCAGTTCAGAACTCAGAAAATAGAAATCAATCAAATCAAATCACATCATTATACAGTTACCGTTACTTAACGGCGTTTGTTTTGTAACAGGCGTTTGGTTTGGGAAGTGAAGAGGAAGTGTTAAAGGAAAGAGGGTTGGAGTCGTTACCGTTTGGAGGGAAACGGTTATTGACGGAGACTAACGGAAACAGAATCGGAAGCTTCGTGCAACGTCTTGTTGCTAATGGAAAGCCAAGTCCACCGTTCAGTCCTTGCAAGGATTCAGCTGTTACATCTCTCGCTAATGGACGCTAG
Protein sequence

>MS.gene32048.t1

MDLTKVTLEIFSKLEHKWLSHCKEETTTKTRILSIDGGGTTAIVAGAALIHLEDQIRLQTSDPHAHVVDFFDIVAGTGIGAILAAMITAADAFGRPMYTARESVRIITEKNSELYKRKSTGVFRRRCRRFSSKNMDNVLKEVFVRKEDSRLLTLRDTCKPLLIPCFDLKSSAPFVFSRADATESPSFNFELWKVCRATSATPNHFKPFEFTSVDGKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSLGNGSSNSKTRENENRTCSTPLMVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLGSEEEVLKERGLESLPFGGKRLLTETNGNRIGSFVQRLVANGKPSPPFSPCKDSAVTSLANGR