Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32612.t1 | XP_003603428.2 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 1.40E-94 | 355.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32612.t1 | O13801 | 29.8 | 161 | 87 | 5 | 3 | 163 | 343 | 477 | 2.4e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32612.t1 | G7JB51 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 9.8e-95 | 355.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049660 | MS.gene32612 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene05054 | MS.gene32612 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene055957 | MS.gene32612 | 0.822678 | 2.08E-53 | -1.69E-46 |
| MS.gene056041 | MS.gene32612 | 0.82028 | 7.45E-53 | -1.69E-46 |
| MS.gene056042 | MS.gene32612 | 0.813178 | 2.92E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene32612 | 0.807633 | 4.60E-50 | -1.69E-46 |
| MS.gene060825 | MS.gene32612 | 0.803075 | 4.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64407 | MS.gene32612 | PPI |
| MS.gene59076 | MS.gene32612 | PPI |
| MS.gene32612 | MS.gene62452 | PPI |
| MS.gene32612 | MS.gene83340 | PPI |
| MS.gene038852 | MS.gene32612 | PPI |
| MS.gene036823 | MS.gene32612 | PPI |
| MS.gene32612 | MS.gene61472 | PPI |
| MS.gene32612 | MS.gene067346 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32612.t1 | MTR_3g107610 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.76e-108 | 306 |
| MS.gene32612.t1 | MTR_3g107610 | 90.789 | 152 | 12 | 2 | 1 | 152 | 1 | 150 | 2.53e-85 | 248 |
| MS.gene32612.t1 | MTR_4g011190 | 61.111 | 162 | 47 | 4 | 1 | 162 | 1 | 146 | 2.09e-55 | 172 |
| MS.gene32612.t1 | MTR_4g113840 | 43.030 | 165 | 51 | 6 | 5 | 161 | 6 | 135 | 4.59e-33 | 114 |
| MS.gene32612.t1 | MTR_2g054750 | 36.943 | 157 | 58 | 3 | 5 | 160 | 6 | 122 | 8.07e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32612.t1 | AT3G15680 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.32e-61 | 187 |
| MS.gene32612.t1 | AT3G15680 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.32e-61 | 187 |
| MS.gene32612.t1 | AT5G25490 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.37e-55 | 173 |
| MS.gene32612.t1 | AT5G25490 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.37e-55 | 173 |
| MS.gene32612.t1 | AT2G26695 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 1.99e-32 | 113 |
| MS.gene32612.t1 | AT2G26695 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 1.99e-32 | 113 |
| MS.gene32612.t1 | AT2G17975 | 30.769 | 169 | 80 | 6 | 3 | 157 | 5 | 150 | 4.56e-16 | 73.9 |
Find 71 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGCGGCGCCGTTGATTT+TGG | 0.178200 | 3.1:-85134761 | MS.gene32612:CDS |
| TTGAGATCACCATACGGTTT+TGG | 0.292602 | 3.1:-85134539 | MS.gene32612:CDS |
| GGGGAGTCAAGAATGATTTC+TGG | 0.322815 | 3.1:-85134785 | MS.gene32612:CDS |
| TTGAGAAGTTCACGATAAAT+AGG | 0.332528 | 3.1:+85134064 | None:intergenic |
| TCGGTAGCATTCCATTCTAT+TGG | 0.379779 | 3.1:+85134124 | None:intergenic |
| GGCTCCTTTCTTGGTGGAAG+AGG | 0.386495 | 3.1:-85134737 | MS.gene32612:CDS |
| GAGAAGGTATCAATATCCTT+AGG | 0.387497 | 3.1:+85134590 | None:intergenic |
| ACTCGCCCCGGCTGGAAATC+CGG | 0.405258 | 3.1:-85134488 | MS.gene32612:CDS |
| GTGCCTCCACTCGCCCCGGC+TGG | 0.416254 | 3.1:-85134496 | MS.gene32612:CDS |
| GGGCCGGTGGTGAAAGGAAA+AGG | 0.421977 | 3.1:+85134704 | None:intergenic |
| CAGTCACCAGGACGGACATC+AGG | 0.429559 | 3.1:+85134683 | None:intergenic |
| CTGATGTCCGTCCTGGTGAC+TGG | 0.431260 | 3.1:-85134682 | MS.gene32612:CDS |
| AGATGAGCAGACCAGGAGAT+TGG | 0.434758 | 3.1:-85134865 | MS.gene32612:CDS |
| GTCCTGCAGTTCCAATCTCC+TGG | 0.444104 | 3.1:+85134854 | None:intergenic |
| CTCTTCTTTGAAAGTTGAGG+TGG | 0.445847 | 3.1:+85134825 | None:intergenic |
| GGCACCACATTTGAAGCAGC+TGG | 0.455963 | 3.1:+85134613 | None:intergenic |
| GGAGGAGGCAGCGCCGGTGG+TGG | 0.457413 | 3.1:-85134518 | MS.gene32612:CDS |
| TTTGAAGCAGCTGGAGCGGC+TGG | 0.457465 | 3.1:+85134622 | None:intergenic |
| CGCTCCAGCTGCTTCAAATG+TGG | 0.474359 | 3.1:-85134617 | MS.gene32612:CDS |
| CTTCAAATGTGGTGCCCCTA+AGG | 0.478199 | 3.1:-85134606 | MS.gene32612:CDS |
| CAGTCACCGGATTTCCAGCC+GGG | 0.479965 | 3.1:+85134482 | None:intergenic |
| CCGGCTGGAAATCCGGTGAC+TGG | 0.485260 | 3.1:-85134481 | MS.gene32612:CDS |
| AGAGCCTCTTCCACCAAGAA+AGG | 0.496788 | 3.1:+85134733 | None:intergenic |
| GCATAACTTCGCCAATAGAA+TGG | 0.497407 | 3.1:-85134135 | MS.gene32612:CDS |
| CTTCCAGTACTAGATTCCCT+TGG | 0.497781 | 3.1:+85134092 | None:intergenic |
| ATTCTCTTCTTTGAAAGTTG+AGG | 0.498262 | 3.1:+85134822 | None:intergenic |
| TTTGGTGGCTCCTTTCTTGG+TGG | 0.500076 | 3.1:-85134743 | MS.gene32612:CDS |
| AGCAGAAAGATGAGCAGACC+AGG | 0.504369 | 3.1:-85134872 | None:intergenic |
| CACATTTGAAGCAGCTGGAG+CGG | 0.504933 | 3.1:+85134618 | None:intergenic |
| GGCCGGTGGTGAAAGGAAAA+GGG | 0.509497 | 3.1:+85134705 | None:intergenic |
| AGAAGGTATCAATATCCTTA+GGG | 0.509984 | 3.1:+85134591 | None:intergenic |
| GACCAGGAGATTGGAACTGC+AGG | 0.511105 | 3.1:-85134856 | MS.gene32612:CDS |
| GCTACCGATGCAACGGTCCA+AGG | 0.513927 | 3.1:-85134109 | MS.gene32612:CDS |
| GGATTTCCAGCCGGGGCGAG+TGG | 0.514801 | 3.1:+85134490 | None:intergenic |
| AGAATGATTTCTGGCGGCGG+CGG | 0.516918 | 3.1:-85134776 | MS.gene32612:CDS |
| GCGAGTGGAGGCACCACCAC+CGG | 0.520780 | 3.1:+85134505 | None:intergenic |
| GTCTGAGGAGTCAGAGGAGA+AGG | 0.523791 | 3.1:+85134574 | None:intergenic |
| CCAGTCACCGGATTTCCAGC+CGG | 0.530047 | 3.1:+85134481 | None:intergenic |
| TTCTTGACTCCCCACATCGT+TGG | 0.531867 | 3.1:+85134795 | None:intergenic |
| ACCGGCCCTGATGTCCGTCC+TGG | 0.532481 | 3.1:-85134689 | MS.gene32612:CDS |
| GGTCCAAGGGAATCTAGTAC+TGG | 0.534715 | 3.1:-85134095 | MS.gene32612:CDS |
| TTTGGAGGAGGCAGCGCCGG+TGG | 0.535377 | 3.1:-85134521 | MS.gene32612:CDS |
| GAGAATCTTGCCAACGATGT+GGG | 0.536610 | 3.1:-85134805 | MS.gene32612:CDS |
| GGTGACTGGTATTGTACTGT+TGG | 0.542639 | 3.1:-85134668 | MS.gene32612:CDS |
| ACATCAGGGCCGGTGGTGAA+AGG | 0.548866 | 3.1:+85134698 | None:intergenic |
| ATTCCCTTGGACCGTTGCAT+CGG | 0.549976 | 3.1:+85134105 | None:intergenic |
| TTTCCAGCCGGGGCGAGTGG+AGG | 0.551998 | 3.1:+85134493 | None:intergenic |
| CCGGTGACTGGATATGCACC+AGG | 0.562370 | 3.1:-85134469 | MS.gene32612:intron |
| CTGCCTCCTCCAAAACCGTA+TGG | 0.574316 | 3.1:+85134530 | None:intergenic |
| ACCAGGACGGACATCAGGGC+CGG | 0.576233 | 3.1:+85134688 | None:intergenic |
| AAAGGAGCCACCAAAATCAA+CGG | 0.591777 | 3.1:+85134751 | None:intergenic |
| CTACCGATGCAACGGTCCAA+GGG | 0.596798 | 3.1:-85134108 | MS.gene32612:CDS |
| GGTGGTGCCTCCACTCGCCC+CGG | 0.597153 | 3.1:-85134500 | MS.gene32612:CDS |
| CCTGGTGCATATCCAGTCAC+CGG | 0.599174 | 3.1:+85134469 | None:intergenic |
| AGAGAATCTTGCCAACGATG+TGG | 0.600788 | 3.1:-85134806 | MS.gene32612:CDS |
| AGAATCTTGCCAACGATGTG+GGG | 0.604150 | 3.1:-85134804 | MS.gene32612:CDS |
| CAATAATCGTGGCATGTCTG+AGG | 0.609735 | 3.1:+85134559 | None:intergenic |
| TGGCATGTCTGAGGAGTCAG+AGG | 0.612841 | 3.1:+85134568 | None:intergenic |
| AGGACGGACATCAGGGCCGG+TGG | 0.617823 | 3.1:+85134691 | None:intergenic |
| TCAAGAATGATTTCTGGCGG+CGG | 0.619694 | 3.1:-85134779 | MS.gene32612:CDS |
| ATGGAATGCTACCGATGCAA+CGG | 0.621720 | 3.1:-85134116 | MS.gene32612:CDS |
| TATTGTACTGTTGGAAACTG+TGG | 0.623871 | 3.1:-85134659 | MS.gene32612:CDS |
| CGATTATTGAGATCACCATA+CGG | 0.625229 | 3.1:-85134545 | MS.gene32612:CDS |
| AGTCACCAGGACGGACATCA+GGG | 0.629819 | 3.1:+85134684 | None:intergenic |
| GCCGGTGGTGAAAGGAAAAG+GGG | 0.632818 | 3.1:+85134706 | None:intergenic |
| ACAGTACAATACCAGTCACC+AGG | 0.642353 | 3.1:+85134671 | None:intergenic |
| GAGTCAAGAATGATTTCTGG+CGG | 0.656995 | 3.1:-85134782 | MS.gene32612:CDS |
| TACAATACCAGTCACCAGGA+CGG | 0.657561 | 3.1:+85134675 | None:intergenic |
| TATGGTGATCTCAATAATCG+TGG | 0.671531 | 3.1:+85134548 | None:intergenic |
| GAAGGTATCAATATCCTTAG+GGG | 0.684912 | 3.1:+85134592 | None:intergenic |
| AGTCACCGGATTTCCAGCCG+GGG | 0.690621 | 3.1:+85134483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3.1:85134535-85134554 | None:intergenic | 15.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3.1:85134631-85134650 | MS.gene32612:CDS | 20.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3.1:85134602-85134621 | MS.gene32612:CDS | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3.1:85134731-85134750 | None:intergenic | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3.1:85134633-85134652 | None:intergenic | 20.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3.1:85134606-85134625 | MS.gene32612:CDS | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3.1:85134732-85134751 | None:intergenic | 25.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3.1:85134576-85134595 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3.1:85134117-85134136 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3.1:85134348-85134367 | None:intergenic | 30.0% |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3.1:85134769-85134788 | MS.gene32612:CDS | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3.1:85134391-85134410 | MS.gene32612:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3.1:85134488-85134507 | None:intergenic | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3.1:85134770-85134789 | MS.gene32612:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3.1:85134769-85134788 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3.1:85134764-85134783 | MS.gene32612:CDS | 35.0% | |
| TATGGTGATCTCAATAATCG+TGG | + | chr3.1:85134391-85134410 | None:intergenic | 35.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3.1:85134277-85134296 | MS.gene32612:intron | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3.1:85134347-85134366 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3.1:85134349-85134368 | None:intergenic | 35.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3.1:85134188-85134207 | None:intergenic | 40.0% | |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3.1:85134521-85134540 | None:intergenic | 40.0% | |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3.1:85134756-85134775 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3.1:85134801-85134820 | MS.gene32612:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3.1:85134815-85134834 | None:intergenic | 40.0% | |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3.1:85134114-85134133 | None:intergenic | 40.0% |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3.1:85134519-85134538 | MS.gene32612:CDS | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3.1:85134154-85134173 | MS.gene32612:intron | 40.0% |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3.1:85134397-85134416 | MS.gene32612:intron | 40.0% |
| ACAGTACAATACCAGTCACC+AGG | + | chr3.1:85134268-85134287 | None:intergenic | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3.1:85134132-85134151 | MS.gene32612:CDS | 45.0% | |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3.1:85134130-85134149 | MS.gene32612:CDS | 45.0% | |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3.1:85134820-85134839 | MS.gene32612:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3.1:85134380-85134399 | None:intergenic | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3.1:85134847-85134866 | None:intergenic | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3.1:85134131-85134150 | MS.gene32612:CDS | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3.1:85134151-85134170 | MS.gene32612:CDS | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3.1:85134268-85134287 | MS.gene32612:intron | 45.0% | |
| TACAATACCAGTCACCAGGA+CGG | + | chr3.1:85134264-85134283 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3.1:85134400-85134419 | MS.gene32612:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3.1:85134190-85134209 | MS.gene32612:intron | 45.0% |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3.1:85134157-85134176 | MS.gene32612:intron | 45.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3.1:85134206-85134225 | None:intergenic | 50.0% | |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3.1:85134834-85134853 | None:intergenic | 50.0% | |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3.1:85134330-85134349 | MS.gene32612:intron | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3.1:85134841-85134860 | MS.gene32612:CDS | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3.1:85134144-85134163 | None:intergenic | 50.0% | |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3.1:85134321-85134340 | None:intergenic | 50.0% |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3.1:85134229-85134248 | MS.gene32612:intron | 50.0% |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3.1:85134193-85134212 | MS.gene32612:intron | 50.0% |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3.1:85134403-85134422 | MS.gene32612:intron | 50.0% |
| AGTCACCAGGACGGACATCA+GGG | + | chr3.1:85134255-85134274 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3.1:85134470-85134489 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3.1:85134319-85134338 | MS.gene32612:intron | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3.1:85134828-85134847 | MS.gene32612:CDS | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3.1:85134409-85134428 | None:intergenic | 55.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3.1:85134080-85134099 | MS.gene32612:CDS | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3.1:85134233-85134252 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3.1:85134234-85134253 | None:intergenic | 55.0% | |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3.1:85134199-85134218 | MS.gene32612:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3.1:85134085-85134104 | None:intergenic | 55.0% | |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3.1:85134365-85134384 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3.1:85134371-85134390 | None:intergenic | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3.1:85134326-85134345 | None:intergenic | 55.0% |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3.1:85134160-85134179 | MS.gene32612:intron | 55.0% |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3.1:85134241-85134260 | None:intergenic | 60.0% | |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3.1:85134456-85134475 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3.1:85134256-85134275 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3.1:85134457-85134476 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3.1:85134458-85134477 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3.1:85134467-85134486 | MS.gene32612:intron | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3.1:85134254-85134273 | MS.gene32612:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3.1:85134827-85134846 | MS.gene32612:CDS | 60.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3.1:85134235-85134254 | None:intergenic | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3.1:85134317-85134336 | None:intergenic | 60.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3.1:85134251-85134270 | None:intergenic | 65.0% | |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3.1:85134448-85134467 | MS.gene32612:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3.1:85134455-85134474 | MS.gene32612:intron | 65.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3.1:85134178-85134197 | MS.gene32612:intron | 65.0% |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3.1:85134412-85134431 | MS.gene32612:intron | 65.0% |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3.1:85134247-85134266 | MS.gene32612:intron | 70.0% | |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3.1:85134248-85134267 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3.1:85134449-85134468 | None:intergenic | 70.0% | |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3.1:85134446-85134465 | None:intergenic | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3.1:85134415-85134434 | MS.gene32612:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3.1:85134434-85134453 | None:intergenic | 70.0% |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3.1:85134175-85134194 | MS.gene32612:intron | 70.0% |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3.1:85134436-85134455 | MS.gene32612:intron | 75.0% | |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3.1:85134440-85134459 | MS.gene32612:intron | 80.0% |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3.1:85134418-85134437 | MS.gene32612:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85134073 | 85134885 | 85134073 | ID=MS.gene32612 |
| chr3.1 | mRNA | 85134073 | 85134885 | 85134073 | ID=MS.gene32612.t1;Parent=MS.gene32612 |
| chr3.1 | exon | 85134470 | 85134885 | 85134470 | ID=MS.gene32612.t1.exon1;Parent=MS.gene32612.t1 |
| chr3.1 | CDS | 85134470 | 85134885 | 85134470 | ID=cds.MS.gene32612.t1;Parent=MS.gene32612.t1 |
| chr3.1 | exon | 85134073 | 85134172 | 85134073 | ID=MS.gene32612.t1.exon2;Parent=MS.gene32612.t1 |
| chr3.1 | CDS | 85134073 | 85134172 | 85134073 | ID=cds.MS.gene32612.t1;Parent=MS.gene32612.t1 |
| Gene Sequence |
| Protein sequence |
