Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32839.t1 | XP_003603107.1 | 95.3 | 278 | 11 | 1 | 1 | 276 | 1 | 278 | 6.90E-157 | 563.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32839.t1 | O82307 | 46.7 | 257 | 102 | 7 | 28 | 256 | 64 | 313 | 1.3e-58 | 228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32839.t1 | G7J714 | 95.3 | 278 | 11 | 1 | 1 | 276 | 1 | 278 | 5.0e-157 | 563.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32839.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052011 | MS.gene32839 | 0.83085 | 2.33E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene32839 | -0.836573 | 8.65E-57 | -1.69E-46 |
| MS.gene054010 | MS.gene32839 | -0.807339 | 5.31E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene32839 | -0.816405 | 5.62E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene32839 | -0.842905 | 1.94E-58 | -1.69E-46 |
| MS.gene056902 | MS.gene32839 | -0.8092 | 2.13E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene32839 | -0.816506 | 5.34E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32839.t1 | MTR_3g103960 | 95.324 | 278 | 11 | 1 | 1 | 276 | 1 | 278 | 0.0 | 546 |
| MS.gene32839.t1 | MTR_8g102100 | 44.479 | 326 | 107 | 9 | 24 | 276 | 52 | 376 | 2.35e-76 | 237 |
| MS.gene32839.t1 | MTR_6g090380 | 44.918 | 305 | 112 | 9 | 23 | 275 | 76 | 376 | 4.52e-74 | 231 |
| MS.gene32839.t1 | MTR_5g071070 | 64.912 | 114 | 39 | 1 | 43 | 156 | 138 | 250 | 9.64e-53 | 181 |
| MS.gene32839.t1 | MTR_4g078660 | 66.972 | 109 | 35 | 1 | 49 | 157 | 56 | 163 | 1.99e-52 | 174 |
| MS.gene32839.t1 | MTR_5g071070 | 57.664 | 137 | 51 | 2 | 43 | 173 | 220 | 355 | 4.59e-52 | 181 |
| MS.gene32839.t1 | MTR_7g092070 | 60.294 | 136 | 50 | 2 | 43 | 175 | 254 | 388 | 4.66e-52 | 181 |
| MS.gene32839.t1 | MTR_2g090605 | 68.571 | 105 | 32 | 1 | 53 | 157 | 77 | 180 | 7.40e-51 | 172 |
| MS.gene32839.t1 | MTR_3g070880 | 49.704 | 169 | 81 | 2 | 16 | 181 | 126 | 293 | 2.81e-49 | 170 |
| MS.gene32839.t1 | MTR_3g029590 | 48.876 | 178 | 76 | 5 | 43 | 219 | 254 | 417 | 4.47e-49 | 173 |
| MS.gene32839.t1 | MTR_5g082830 | 64.035 | 114 | 40 | 1 | 43 | 156 | 207 | 319 | 5.30e-48 | 169 |
| MS.gene32839.t1 | MTR_1g075890 | 59.690 | 129 | 50 | 2 | 43 | 171 | 219 | 345 | 5.15e-47 | 166 |
| MS.gene32839.t1 | MTR_3g435680 | 50.000 | 158 | 64 | 5 | 31 | 175 | 122 | 277 | 1.10e-45 | 158 |
| MS.gene32839.t1 | MTR_1g050438 | 60.550 | 109 | 42 | 1 | 48 | 156 | 223 | 330 | 1.63e-45 | 161 |
| MS.gene32839.t1 | MTR_0728s0020 | 60.550 | 109 | 42 | 1 | 48 | 156 | 239 | 346 | 2.75e-45 | 161 |
| MS.gene32839.t1 | MTR_3g435590 | 37.398 | 246 | 138 | 6 | 43 | 276 | 228 | 469 | 1.52e-44 | 157 |
| MS.gene32839.t1 | MTR_3g464270 | 44.872 | 156 | 82 | 2 | 52 | 207 | 8 | 159 | 1.72e-40 | 144 |
| MS.gene32839.t1 | MTR_3g464260 | 45.270 | 148 | 45 | 4 | 39 | 177 | 183 | 303 | 3.16e-29 | 116 |
| MS.gene32839.t1 | MTR_3g464290 | 56.977 | 86 | 35 | 2 | 43 | 127 | 90 | 174 | 2.21e-27 | 110 |
| MS.gene32839.t1 | MTR_3g464280 | 31.250 | 192 | 67 | 4 | 39 | 202 | 165 | 319 | 9.31e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32839.t1 | AT4G29190 | 45.833 | 288 | 100 | 10 | 43 | 275 | 69 | 355 | 5.71e-69 | 217 |
| MS.gene32839.t1 | AT2G19810 | 41.411 | 326 | 130 | 9 | 10 | 275 | 34 | 358 | 6.85e-69 | 217 |
| MS.gene32839.t1 | AT2G25900 | 47.660 | 235 | 89 | 6 | 49 | 256 | 86 | 313 | 8.19e-65 | 205 |
| MS.gene32839.t1 | AT2G25900 | 47.660 | 235 | 89 | 6 | 49 | 256 | 86 | 313 | 8.19e-65 | 205 |
| MS.gene32839.t1 | AT1G03790 | 51.205 | 166 | 78 | 1 | 12 | 177 | 44 | 206 | 4.15e-56 | 185 |
| MS.gene32839.t1 | AT5G44260 | 63.636 | 121 | 41 | 1 | 37 | 157 | 47 | 164 | 1.52e-53 | 178 |
| MS.gene32839.t1 | AT2G40140 | 44.053 | 227 | 94 | 4 | 43 | 256 | 204 | 410 | 2.28e-52 | 180 |
| MS.gene32839.t1 | AT2G40140 | 44.053 | 227 | 94 | 4 | 43 | 256 | 204 | 410 | 2.28e-52 | 180 |
| MS.gene32839.t1 | AT2G41900 | 60.902 | 133 | 50 | 2 | 43 | 175 | 251 | 381 | 8.17e-51 | 177 |
| MS.gene32839.t1 | AT5G58620 | 63.158 | 114 | 41 | 1 | 43 | 156 | 199 | 311 | 3.06e-50 | 174 |
| MS.gene32839.t1 | AT5G12850 | 62.281 | 114 | 42 | 1 | 43 | 156 | 247 | 359 | 1.29e-49 | 174 |
| MS.gene32839.t1 | AT3G55980 | 55.147 | 136 | 60 | 1 | 43 | 178 | 201 | 335 | 7.34e-49 | 170 |
| MS.gene32839.t1 | AT3G55980 | 55.147 | 136 | 60 | 1 | 43 | 178 | 268 | 402 | 2.45e-48 | 170 |
| MS.gene32839.t1 | AT5G07500 | 60.177 | 113 | 44 | 1 | 48 | 160 | 47 | 158 | 1.14e-47 | 159 |
Find 80 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTGTTGTGTTCCATTC+AGG | 0.185975 | 3.1:-82118869 | None:intergenic |
| GCCAAAATCTATGCAAAATT+TGG | 0.227605 | 3.1:+82119574 | MS.gene32839:CDS |
| TTGGCTTCATGAGGAGTGTT+AGG | 0.270195 | 3.1:+82119422 | MS.gene32839:CDS |
| TGCCCGGAGTTTCGCAAATT+AGG | 0.270671 | 3.1:+82119136 | MS.gene32839:CDS |
| TCCGCAACCCATCCAATATC+AGG | 0.272913 | 3.1:-82119637 | None:intergenic |
| TCTCAGATGGGTTCTGTGTT+TGG | 0.301160 | 3.1:+82119466 | MS.gene32839:CDS |
| TCGGTCCCTGTCCCTGATAT+TGG | 0.350163 | 3.1:+82119625 | MS.gene32839:CDS |
| GTAACGACGGAACCCTTTGC+CGG | 0.351954 | 3.1:+82119245 | MS.gene32839:CDS |
| AAACTATGAAGGGGTTTCTA+TGG | 0.361016 | 3.1:+82119522 | MS.gene32839:CDS |
| TGAATTCGAACATTCGGAAT+TGG | 0.372764 | 3.1:-82118997 | None:intergenic |
| CTCAAACGATGGTGTTGTTT+CGG | 0.374036 | 3.1:+82119606 | MS.gene32839:CDS |
| AAACTCCGGGCAAGGATTGC+CGG | 0.383876 | 3.1:-82119125 | None:intergenic |
| TGGCTTCATGAGGAGTGTTA+GGG | 0.417289 | 3.1:+82119423 | MS.gene32839:CDS |
| GGTGATGAAACAAATGATTC+TGG | 0.419935 | 3.1:-82119328 | None:intergenic |
| GAAACCCCTTCATAGTTTGA+TGG | 0.429345 | 3.1:-82119517 | None:intergenic |
| ATTGTGTTGTGTTCCATTCA+GGG | 0.430094 | 3.1:-82118868 | None:intergenic |
| CTATGTCATTTGAAATGAAA+TGG | 0.449117 | 3.1:-82118913 | None:intergenic |
| TCTGTGTTTGGTTCTCCACC+AGG | 0.450591 | 3.1:+82119478 | MS.gene32839:CDS |
| GAACTTTGAATTCGAACATT+CGG | 0.452223 | 3.1:-82119003 | None:intergenic |
| TCCCTGTCCCTGATATTGGA+TGG | 0.452555 | 3.1:+82119629 | MS.gene32839:CDS |
| TCTATGGAGAGGGTGGAATC+AGG | 0.458742 | 3.1:+82119538 | MS.gene32839:CDS |
| AGCAAACTCGTCGCCGGCAA+AGG | 0.462993 | 3.1:-82119258 | None:intergenic |
| AGTCTTCCATCAAACTATGA+AGG | 0.470405 | 3.1:+82119511 | MS.gene32839:CDS |
| GATTCTTGCCACTTTGCTCA+TGG | 0.472931 | 3.1:+82119175 | MS.gene32839:CDS |
| TGTCCTAATTTGCGAAACTC+CGG | 0.493268 | 3.1:-82119139 | None:intergenic |
| ACCTCGATACGGTGTCCCTC+CGG | 0.499369 | 3.1:+82119381 | MS.gene32839:CDS |
| CCCTGTCCCTGATATTGGAT+GGG | 0.503425 | 3.1:+82119630 | MS.gene32839:CDS |
| GTCATTTGAAATGAAATGGT+TGG | 0.505715 | 3.1:-82118909 | None:intergenic |
| GCAAACTCGTCGCCGGCAAA+GGG | 0.507995 | 3.1:-82119257 | None:intergenic |
| GAAATGAAATGGTTGGAGAA+TGG | 0.518175 | 3.1:-82118902 | None:intergenic |
| ACTAATTCCCTCACGTTCAC+CGG | 0.518657 | 3.1:-82119400 | None:intergenic |
| CTACTCCGGCAATCCTTGCC+CGG | 0.523473 | 3.1:+82119120 | MS.gene32839:CDS |
| ACAGAACCCATCTGAGATAC+CGG | 0.527743 | 3.1:-82119460 | None:intergenic |
| ACCCATCCAATATCAGGGAC+AGG | 0.527836 | 3.1:-82119631 | None:intergenic |
| ACAAAGCTGAGTTCTGTAAC+GGG | 0.529200 | 3.1:-82119224 | None:intergenic |
| ATGAAGGGGTTTCTATGGAG+AGG | 0.530332 | 3.1:+82119527 | MS.gene32839:CDS |
| CCCTGATATTGGATGGGTTG+CGG | 0.534129 | 3.1:+82119636 | MS.gene32839:CDS |
| AAAGTGGCAAGAATCACCTT+TGG | 0.537660 | 3.1:-82119167 | None:intergenic |
| ATGGAGTCCGGTATCTCAGA+TGG | 0.538705 | 3.1:+82119453 | MS.gene32839:CDS |
| GGAGAATCAAGAACTGAAGT+AGG | 0.540667 | 3.1:-82119349 | None:intergenic |
| GTCCTAATTTGCGAAACTCC+GGG | 0.542282 | 3.1:-82119138 | None:intergenic |
| GTCTTCCATCAAACTATGAA+GGG | 0.551277 | 3.1:+82119512 | MS.gene32839:CDS |
| CAAACCTTAAAATCCCTGAA+TGG | 0.551949 | 3.1:+82118855 | MS.gene32839:CDS |
| GGGAATTAGTTGGCTTCATG+AGG | 0.558865 | 3.1:+82119413 | MS.gene32839:CDS |
| AATTTGCGAAACTCCGGGCA+AGG | 0.560424 | 3.1:-82119133 | None:intergenic |
| ATTGGTCTGTTGAGAAAACA+TGG | 0.569270 | 3.1:-82118979 | None:intergenic |
| ACACCGTATCGAGGTTTCCT+CGG | 0.574430 | 3.1:-82119373 | None:intergenic |
| TAGGGTTGATGAATGGAGTC+CGG | 0.576489 | 3.1:+82119441 | MS.gene32839:CDS |
| TACAAAGCTGAGTTCTGTAA+CGG | 0.577054 | 3.1:-82119225 | None:intergenic |
| AGGGGTTTCTATGGAGAGGG+TGG | 0.581223 | 3.1:+82119531 | MS.gene32839:CDS |
| GTGTCCCTCCGGTGAACGTG+AGG | 0.581697 | 3.1:+82119392 | MS.gene32839:CDS |
| CAAAGAAGCAAACTCGTCGC+CGG | 0.584023 | 3.1:-82119264 | None:intergenic |
| GTGAACGTGAGGGAATTAGT+TGG | 0.588119 | 3.1:+82119403 | MS.gene32839:CDS |
| AACGTGGTAGGTCTCATGAC+TGG | 0.591872 | 3.1:+82119035 | MS.gene32839:CDS |
| TCTGTTGAGAAAACATGGAT+TGG | 0.594271 | 3.1:-82118974 | None:intergenic |
| GGAGTGTTAGGGTTGATGAA+TGG | 0.595988 | 3.1:+82119434 | MS.gene32839:CDS |
| AAATTAGGACACTGCACCAA+AGG | 0.596122 | 3.1:+82119151 | MS.gene32839:CDS |
| TTCGAAAATGCCAACGTGGT+AGG | 0.602152 | 3.1:+82119023 | MS.gene32839:CDS |
| AGCTGAGTTCTGTAACGGGA+AGG | 0.612629 | 3.1:-82119220 | None:intergenic |
| GTGTTTGGTTCTCCACCAGG+TGG | 0.617183 | 3.1:+82119481 | MS.gene32839:CDS |
| TGGAGTCCGGTATCTCAGAT+GGG | 0.620816 | 3.1:+82119454 | MS.gene32839:CDS |
| CCGCAACCCATCCAATATCA+GGG | 0.621198 | 3.1:-82119636 | None:intergenic |
| TCTTCCATCAAACTATGAAG+GGG | 0.627249 | 3.1:+82119513 | MS.gene32839:CDS |
| GGTAGATTGAACTCAAACGA+TGG | 0.627699 | 3.1:+82119595 | MS.gene32839:CDS |
| ATTCCCTCACGTTCACCGGA+GGG | 0.629594 | 3.1:-82119396 | None:intergenic |
| CCTCCGAGGAAACCTCGATA+CGG | 0.630315 | 3.1:+82119370 | MS.gene32839:CDS |
| AGAACTCAGCTTTGTAACGA+CGG | 0.632022 | 3.1:+82119232 | MS.gene32839:CDS |
| GTGAAGCGTTATTTGAGACA+CGG | 0.632246 | 3.1:-82119306 | None:intergenic |
| CAGTTCTTGATTCTCCTCCG+AGG | 0.634516 | 3.1:+82119356 | MS.gene32839:CDS |
| AATTCCCTCACGTTCACCGG+AGG | 0.638441 | 3.1:-82119397 | None:intergenic |
| GATTGTCCATACTCTCATCC+CGG | 0.639508 | 3.1:+82119061 | MS.gene32839:CDS |
| TGAAGGGGTTTCTATGGAGA+GGG | 0.646493 | 3.1:+82119528 | MS.gene32839:CDS |
| CCCATCCAATATCAGGGACA+GGG | 0.654742 | 3.1:-82119630 | None:intergenic |
| TGTCCCTCCGGTGAACGTGA+GGG | 0.657063 | 3.1:+82119393 | MS.gene32839:CDS |
| TGGTAGGTCTCATGACTGGA+CGG | 0.659097 | 3.1:+82119039 | MS.gene32839:CDS |
| ACCGGAGGGACACCGTATCG+AGG | 0.671631 | 3.1:-82119382 | None:intergenic |
| AGTCATGAGACCTACCACGT+TGG | 0.672854 | 3.1:-82119033 | None:intergenic |
| ATGGAACACAACACAATACG+AGG | 0.674097 | 3.1:+82118874 | MS.gene32839:CDS |
| CCGTATCGAGGTTTCCTCGG+AGG | 0.710192 | 3.1:-82119370 | None:intergenic |
| AAAGTTCGAAAATGCCAACG+TGG | 0.760484 | 3.1:+82119019 | MS.gene32839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCAAATTTTGCATAGATTT+TGG | - | chr3.1:82119578-82119597 | None:intergenic | 25.0% |
| !! | CTATGTCATTTGAAATGAAA+TGG | - | chr3.1:82118916-82118935 | None:intergenic | 25.0% |
| GAACTTTGAATTCGAACATT+CGG | - | chr3.1:82119006-82119025 | None:intergenic | 30.0% | |
| GCCAAAATCTATGCAAAATT+TGG | + | chr3.1:82119574-82119593 | MS.gene32839:CDS | 30.0% | |
| ! | GTCATTTGAAATGAAATGGT+TGG | - | chr3.1:82118912-82118931 | None:intergenic | 30.0% |
| AAACTATGAAGGGGTTTCTA+TGG | + | chr3.1:82119522-82119541 | MS.gene32839:CDS | 35.0% | |
| AGTCTTCCATCAAACTATGA+AGG | + | chr3.1:82119511-82119530 | MS.gene32839:CDS | 35.0% | |
| ATTGTGTTGTGTTCCATTCA+GGG | - | chr3.1:82118871-82118890 | None:intergenic | 35.0% | |
| CAAACCTTAAAATCCCTGAA+TGG | + | chr3.1:82118855-82118874 | MS.gene32839:CDS | 35.0% | |
| CCTCAAAAATACAACTACTC+CGG | + | chr3.1:82119106-82119125 | MS.gene32839:CDS | 35.0% | |
| GAAATGAAATGGTTGGAGAA+TGG | - | chr3.1:82118905-82118924 | None:intergenic | 35.0% | |
| GGTGATGAAACAAATGATTC+TGG | - | chr3.1:82119331-82119350 | None:intergenic | 35.0% | |
| GTCTTCCATCAAACTATGAA+GGG | + | chr3.1:82119512-82119531 | MS.gene32839:CDS | 35.0% | |
| TACAAAGCTGAGTTCTGTAA+CGG | - | chr3.1:82119228-82119247 | None:intergenic | 35.0% | |
| TATTGTGTTGTGTTCCATTC+AGG | - | chr3.1:82118872-82118891 | None:intergenic | 35.0% | |
| TCTGTTGAGAAAACATGGAT+TGG | - | chr3.1:82118977-82118996 | None:intergenic | 35.0% | |
| TCTTCCATCAAACTATGAAG+GGG | + | chr3.1:82119513-82119532 | MS.gene32839:CDS | 35.0% | |
| TGAATTCGAACATTCGGAAT+TGG | - | chr3.1:82119000-82119019 | None:intergenic | 35.0% | |
| ! | ATTGGTCTGTTGAGAAAACA+TGG | - | chr3.1:82118982-82119001 | None:intergenic | 35.0% |
| ! | TGTTCCATTCAGGGATTTTA+AGG | - | chr3.1:82118862-82118881 | None:intergenic | 35.0% |
| !! | CGGAGTAGTTGTATTTTTGA+GGG | - | chr3.1:82119108-82119127 | None:intergenic | 35.0% |
| !!! | CATTCAGGGATTTTAAGGTT+TGG | - | chr3.1:82118857-82118876 | None:intergenic | 35.0% |
| AAAGTGGCAAGAATCACCTT+TGG | - | chr3.1:82119170-82119189 | None:intergenic | 40.0% | |
| AAAGTTCGAAAATGCCAACG+TGG | + | chr3.1:82119019-82119038 | MS.gene32839:CDS | 40.0% | |
| AAATTAGGACACTGCACCAA+AGG | + | chr3.1:82119151-82119170 | MS.gene32839:CDS | 40.0% | |
| ACAAAGCTGAGTTCTGTAAC+GGG | - | chr3.1:82119227-82119246 | None:intergenic | 40.0% | |
| ATGGAACACAACACAATACG+AGG | + | chr3.1:82118874-82118893 | MS.gene32839:CDS | 40.0% | |
| CAAAAACACCATGAGCAAAG+TGG | - | chr3.1:82119186-82119205 | None:intergenic | 40.0% | |
| GAAACCCCTTCATAGTTTGA+TGG | - | chr3.1:82119520-82119539 | None:intergenic | 40.0% | |
| GGAGAATCAAGAACTGAAGT+AGG | - | chr3.1:82119352-82119371 | None:intergenic | 40.0% | |
| GGTAGATTGAACTCAAACGA+TGG | + | chr3.1:82119595-82119614 | MS.gene32839:CDS | 40.0% | |
| ! | AGAACTCAGCTTTGTAACGA+CGG | + | chr3.1:82119232-82119251 | MS.gene32839:CDS | 40.0% |
| ! | GTGAAGCGTTATTTGAGACA+CGG | - | chr3.1:82119309-82119328 | None:intergenic | 40.0% |
| ! | TGTCCTAATTTGCGAAACTC+CGG | - | chr3.1:82119142-82119161 | None:intergenic | 40.0% |
| !! | CCGGAGTAGTTGTATTTTTG+AGG | - | chr3.1:82119109-82119128 | None:intergenic | 40.0% |
| !! | CTCAAACGATGGTGTTGTTT+CGG | + | chr3.1:82119606-82119625 | MS.gene32839:CDS | 40.0% |
| !! | CTCATGGTGTTTTTGAATGC+TGG | + | chr3.1:82119191-82119210 | MS.gene32839:CDS | 40.0% |
| !! | TGTATTTTTGAGGGTCTCTC+CGG | - | chr3.1:82119099-82119118 | None:intergenic | 40.0% |
| ACTAATTCCCTCACGTTCAC+CGG | - | chr3.1:82119403-82119422 | None:intergenic | 45.0% | |
| AGACTCAAAAAACCACCTGG+TGG | - | chr3.1:82119496-82119515 | None:intergenic | 45.0% | |
| ATGAAGGGGTTTCTATGGAG+AGG | + | chr3.1:82119527-82119546 | MS.gene32839:CDS | 45.0% | |
| GATTGTCCATACTCTCATCC+CGG | + | chr3.1:82119061-82119080 | MS.gene32839:CDS | 45.0% | |
| GGAAGACTCAAAAAACCACC+TGG | - | chr3.1:82119499-82119518 | None:intergenic | 45.0% | |
| GTGAACGTGAGGGAATTAGT+TGG | + | chr3.1:82119403-82119422 | MS.gene32839:CDS | 45.0% | |
| TGAAGGGGTTTCTATGGAGA+GGG | + | chr3.1:82119528-82119547 | MS.gene32839:CDS | 45.0% | |
| TTCGAAAATGCCAACGTGGT+AGG | + | chr3.1:82119023-82119042 | MS.gene32839:CDS | 45.0% | |
| ! | ACAGAACCCATCTGAGATAC+CGG | - | chr3.1:82119463-82119482 | None:intergenic | 45.0% |
| ! | GGGAATTAGTTGGCTTCATG+AGG | + | chr3.1:82119413-82119432 | MS.gene32839:CDS | 45.0% |
| ! | GTCCTAATTTGCGAAACTCC+GGG | - | chr3.1:82119141-82119160 | None:intergenic | 45.0% |
| ! | TCTCAGATGGGTTCTGTGTT+TGG | + | chr3.1:82119466-82119485 | MS.gene32839:CDS | 45.0% |
| !! | GATTCTTGCCACTTTGCTCA+TGG | + | chr3.1:82119175-82119194 | MS.gene32839:CDS | 45.0% |
| !! | GGAGTGTTAGGGTTGATGAA+TGG | + | chr3.1:82119434-82119453 | MS.gene32839:CDS | 45.0% |
| !! | TAGGGTTGATGAATGGAGTC+CGG | + | chr3.1:82119441-82119460 | MS.gene32839:CDS | 45.0% |
| !! | TGGCTTCATGAGGAGTGTTA+GGG | + | chr3.1:82119423-82119442 | MS.gene32839:CDS | 45.0% |
| !! | TTGGCTTCATGAGGAGTGTT+AGG | + | chr3.1:82119422-82119441 | MS.gene32839:CDS | 45.0% |
| AACGTGGTAGGTCTCATGAC+TGG | + | chr3.1:82119035-82119054 | MS.gene32839:CDS | 50.0% | |
| AATTTGCGAAACTCCGGGCA+AGG | - | chr3.1:82119136-82119155 | None:intergenic | 50.0% | |
| ACACCGTATCGAGGTTTCCT+CGG | - | chr3.1:82119376-82119395 | None:intergenic | 50.0% | |
| ACCCATCCAATATCAGGGAC+AGG | - | chr3.1:82119634-82119653 | None:intergenic | 50.0% | |
| AGTCATGAGACCTACCACGT+TGG | - | chr3.1:82119036-82119055 | None:intergenic | 50.0% | |
| ATGGAGTCCGGTATCTCAGA+TGG | + | chr3.1:82119453-82119472 | MS.gene32839:CDS | 50.0% | |
| CAAAGAAGCAAACTCGTCGC+CGG | - | chr3.1:82119267-82119286 | None:intergenic | 50.0% | |
| CAGTTCTTGATTCTCCTCCG+AGG | + | chr3.1:82119356-82119375 | MS.gene32839:CDS | 50.0% | |
| CCCATCCAATATCAGGGACA+GGG | - | chr3.1:82119633-82119652 | None:intergenic | 50.0% | |
| CCCTGTCCCTGATATTGGAT+GGG | + | chr3.1:82119630-82119649 | MS.gene32839:CDS | 50.0% | |
| CCGCAACCCATCCAATATCA+GGG | - | chr3.1:82119639-82119658 | None:intergenic | 50.0% | |
| TCCCTGTCCCTGATATTGGA+TGG | + | chr3.1:82119629-82119648 | MS.gene32839:CDS | 50.0% | |
| TCCGCAACCCATCCAATATC+AGG | - | chr3.1:82119640-82119659 | None:intergenic | 50.0% | |
| TCTATGGAGAGGGTGGAATC+AGG | + | chr3.1:82119538-82119557 | MS.gene32839:CDS | 50.0% | |
| TGCCCGGAGTTTCGCAAATT+AGG | + | chr3.1:82119136-82119155 | MS.gene32839:CDS | 50.0% | |
| TGGAGTCCGGTATCTCAGAT+GGG | + | chr3.1:82119454-82119473 | MS.gene32839:CDS | 50.0% | |
| TGGTAGGTCTCATGACTGGA+CGG | + | chr3.1:82119039-82119058 | MS.gene32839:CDS | 50.0% | |
| ! | AGCTGAGTTCTGTAACGGGA+AGG | - | chr3.1:82119223-82119242 | None:intergenic | 50.0% |
| ! | TTTTCGCCGGGATGAGAGTA+TGG | - | chr3.1:82119070-82119089 | None:intergenic | 50.0% |
| !! | CCCTGATATTGGATGGGTTG+CGG | + | chr3.1:82119636-82119655 | MS.gene32839:CDS | 50.0% |
| !! | TCTGTGTTTGGTTCTCCACC+AGG | + | chr3.1:82119478-82119497 | MS.gene32839:CDS | 50.0% |
| AAACTCCGGGCAAGGATTGC+CGG | - | chr3.1:82119128-82119147 | None:intergenic | 55.0% | |
| AATTCCCTCACGTTCACCGG+AGG | - | chr3.1:82119400-82119419 | None:intergenic | 55.0% | |
| AGGGGTTTCTATGGAGAGGG+TGG | + | chr3.1:82119531-82119550 | MS.gene32839:CDS | 55.0% | |
| ATTCCCTCACGTTCACCGGA+GGG | - | chr3.1:82119399-82119418 | None:intergenic | 55.0% | |
| CCTCCGAGGAAACCTCGATA+CGG | + | chr3.1:82119370-82119389 | MS.gene32839:CDS | 55.0% | |
| GTAACGACGGAACCCTTTGC+CGG | + | chr3.1:82119245-82119264 | MS.gene32839:CDS | 55.0% | |
| TCGGTCCCTGTCCCTGATAT+TGG | + | chr3.1:82119625-82119644 | MS.gene32839:CDS | 55.0% | |
| !! | GTGTTTGGTTCTCCACCAGG+TGG | + | chr3.1:82119481-82119500 | MS.gene32839:CDS | 55.0% |
| ACCTCGATACGGTGTCCCTC+CGG | + | chr3.1:82119381-82119400 | MS.gene32839:CDS | 60.0% | |
| AGCAAACTCGTCGCCGGCAA+AGG | - | chr3.1:82119261-82119280 | None:intergenic | 60.0% | |
| ATCCCGGCGAAAAAGCTCGC+CGG | + | chr3.1:82119077-82119096 | MS.gene32839:CDS | 60.0% | |
| CCGTATCGAGGTTTCCTCGG+AGG | - | chr3.1:82119373-82119392 | None:intergenic | 60.0% | |
| CTACTCCGGCAATCCTTGCC+CGG | + | chr3.1:82119120-82119139 | MS.gene32839:CDS | 60.0% | |
| GCAAACTCGTCGCCGGCAAA+GGG | - | chr3.1:82119260-82119279 | None:intergenic | 60.0% | |
| TGTCCCTCCGGTGAACGTGA+GGG | + | chr3.1:82119393-82119412 | MS.gene32839:CDS | 60.0% | |
| !!! | TCTCCGGCGAGCTTTTTCGC+CGG | - | chr3.1:82119083-82119102 | None:intergenic | 60.0% |
| ACCGGAGGGACACCGTATCG+AGG | - | chr3.1:82119385-82119404 | None:intergenic | 65.0% | |
| GTGTCCCTCCGGTGAACGTG+AGG | + | chr3.1:82119392-82119411 | MS.gene32839:CDS | 65.0% | |
| !!! | CTCCGGCGAGCTTTTTCGCC+GGG | - | chr3.1:82119082-82119101 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82118842 | 82119672 | 82118842 | ID=MS.gene32839 |
| chr3.1 | mRNA | 82118842 | 82119672 | 82118842 | ID=MS.gene32839.t1;Parent=MS.gene32839 |
| chr3.1 | exon | 82118842 | 82119672 | 82118842 | ID=MS.gene32839.t1.exon1;Parent=MS.gene32839.t1 |
| chr3.1 | CDS | 82118842 | 82119672 | 82118842 | ID=cds.MS.gene32839.t1;Parent=MS.gene32839.t1 |
| Gene Sequence |
| Protein sequence |
