Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32845.t1 | GAU15580.1 | 83.5 | 79 | 9 | 1 | 113 | 187 | 141 | 219 | 5.50E-25 | 124.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32845.t1 | Q02909 | 88.1 | 67 | 8 | 0 | 121 | 187 | 151 | 217 | 7.3e-26 | 119.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32845.t1 | G7IU25 | 82.3 | 79 | 10 | 1 | 113 | 187 | 140 | 218 | 1.5e-24 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene32845 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene32845 | 0.800495 | 1.40E-48 | -1.69E-46 |
| MS.gene052056 | MS.gene32845 | -0.808251 | 3.39E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene32845 | -0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene056776 | MS.gene32845 | 0.804172 | 2.45E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene32845 | 0.803285 | 3.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32845.t1 | MTR_5g038570 | 88.983 | 118 | 11 | 2 | 4 | 120 | 94 | 210 | 5.52e-47 | 161 |
| MS.gene32845.t1 | MTR_2g092930 | 82.278 | 79 | 10 | 1 | 113 | 187 | 140 | 218 | 1.21e-34 | 131 |
| MS.gene32845.t1 | MTR_8g463920 | 88.235 | 68 | 8 | 0 | 120 | 187 | 150 | 217 | 3.88e-33 | 127 |
| MS.gene32845.t1 | MTR_8g463920 | 88.235 | 68 | 8 | 0 | 120 | 187 | 150 | 217 | 4.02e-33 | 127 |
| MS.gene32845.t1 | MTR_4g079860 | 75.949 | 79 | 15 | 1 | 113 | 187 | 140 | 218 | 4.02e-32 | 124 |
| MS.gene32845.t1 | MTR_2g076670 | 83.582 | 67 | 11 | 0 | 121 | 187 | 150 | 216 | 7.79e-32 | 123 |
| MS.gene32845.t1 | MTR_7g064210 | 64.384 | 73 | 24 | 1 | 159 | 229 | 156 | 228 | 4.23e-22 | 94.4 |
| MS.gene32845.t1 | MTR_2g022940 | 93.023 | 43 | 3 | 0 | 186 | 228 | 1 | 43 | 5.01e-21 | 89.0 |
| MS.gene32845.t1 | MTR_7g021870 | 63.636 | 66 | 10 | 1 | 177 | 228 | 62 | 127 | 1.18e-17 | 80.9 |
| MS.gene32845.t1 | MTR_5g030880 | 72.727 | 44 | 5 | 1 | 186 | 229 | 1 | 37 | 3.97e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32845.t1 | AT1G53310 | 74.684 | 79 | 16 | 1 | 113 | 187 | 140 | 218 | 3.61e-31 | 121 |
| MS.gene32845.t1 | AT1G53310 | 74.684 | 79 | 16 | 1 | 113 | 187 | 140 | 218 | 3.61e-31 | 121 |
| MS.gene32845.t1 | AT1G53310 | 74.684 | 79 | 16 | 1 | 113 | 187 | 140 | 218 | 3.61e-31 | 121 |
| MS.gene32845.t1 | AT2G42600 | 83.824 | 68 | 11 | 0 | 120 | 187 | 150 | 217 | 6.35e-31 | 120 |
| MS.gene32845.t1 | AT2G42600 | 83.824 | 68 | 11 | 0 | 120 | 187 | 150 | 217 | 6.35e-31 | 120 |
| MS.gene32845.t1 | AT2G42600 | 83.824 | 68 | 11 | 0 | 120 | 187 | 150 | 217 | 6.35e-31 | 120 |
| MS.gene32845.t1 | AT3G14940 | 73.418 | 79 | 17 | 1 | 113 | 187 | 140 | 218 | 7.70e-31 | 120 |
| MS.gene32845.t1 | AT3G14940 | 73.418 | 79 | 17 | 1 | 113 | 187 | 140 | 218 | 7.70e-31 | 120 |
| MS.gene32845.t1 | AT1G69800 | 57.143 | 154 | 58 | 4 | 9 | 160 | 96 | 243 | 1.32e-17 | 81.3 |
| MS.gene32845.t1 | AT1G69800 | 57.143 | 154 | 58 | 4 | 9 | 160 | 125 | 272 | 1.54e-17 | 81.6 |
| MS.gene32845.t1 | AT1G69800 | 57.143 | 154 | 58 | 4 | 9 | 160 | 96 | 243 | 1.72e-17 | 81.3 |
| MS.gene32845.t1 | AT1G10840 | 57.576 | 66 | 14 | 1 | 177 | 228 | 61 | 126 | 1.38e-15 | 75.1 |
Find 57 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATTTCAAGCCGGTAAT+TGG | 0.239796 | 3.1:+81981594 | None:intergenic |
| GTGGGAACTGTCGGTGCTTT+GGG | 0.318992 | 3.1:-81982923 | MS.gene32845:CDS |
| AAGCTGATGGTGCCAATTAC+CGG | 0.328122 | 3.1:-81981606 | MS.gene32845:CDS |
| AATCAGCTCCAGAGTTTGAT+AGG | 0.331173 | 3.1:+81981372 | None:intergenic |
| TATTACCTGGTAATTCATAA+AGG | 0.355740 | 3.1:+81981345 | None:intergenic |
| TGTGGGAACTGTCGGTGCTT+TGG | 0.357110 | 3.1:-81982924 | MS.gene32845:CDS |
| ACTGAGTAGGATGAGCAATT+AGG | 0.383779 | 3.1:+81982410 | None:intergenic |
| ACAGGTCCTGCTGCAATTGC+GGG | 0.391461 | 3.1:-81982881 | MS.gene32845:CDS |
| ATTTATCTCCTCAACTTTCA+CGG | 0.399766 | 3.1:-81981315 | MS.gene32845:CDS |
| GCTTACCGTTGTTGACTTGA+AGG | 0.402879 | 3.1:+81982727 | None:intergenic |
| TCAAGTTCTTGCTTATCATC+TGG | 0.412579 | 3.1:+81981870 | None:intergenic |
| ATTATGGGAGGAGCAGGAAT+TGG | 0.416694 | 3.1:-81983073 | MS.gene32845:CDS |
| GCTTTGGGAGCAATAGCATT+AGG | 0.416841 | 3.1:-81982908 | MS.gene32845:CDS |
| GAGCAGGAATTGGTTCAGAT+TGG | 0.444829 | 3.1:-81983063 | MS.gene32845:CDS |
| GCTGCAGTTGCTCTATTAGC+TGG | 0.473896 | 3.1:-81982971 | MS.gene32845:CDS |
| GCAATAGCATTAGGAGCTAC+AGG | 0.486153 | 3.1:-81982899 | MS.gene32845:CDS |
| TACAGGTCCTGCTGCAATTG+CGG | 0.492454 | 3.1:-81982882 | MS.gene32845:CDS |
| GCTGGTACAACAACAGCTGC+TGG | 0.496869 | 3.1:-81982953 | MS.gene32845:CDS |
| CTTTGCTGCAAAAGCATGGA+AGG | 0.500526 | 3.1:-81982375 | MS.gene32845:intron |
| CTAACAGCTGCTGCTGCAGT+AGG | 0.506680 | 3.1:-81982857 | MS.gene32845:CDS |
| AGCTATAATTCTGTGGGTGA+TGG | 0.512414 | 3.1:-81983008 | MS.gene32845:CDS |
| CTTACCGTTGTTGACTTGAA+GGG | 0.522281 | 3.1:+81982728 | None:intergenic |
| GTTAGTCCCGCAATTGCAGC+AGG | 0.531116 | 3.1:+81982875 | None:intergenic |
| GGAGTTGGTGTGGGAACTGT+CGG | 0.534103 | 3.1:-81982932 | MS.gene32845:CDS |
| TGAACTCAAGAAGACTCCTC+TGG | 0.541474 | 3.1:-81982473 | MS.gene32845:intron |
| ATTATTCAGCTATAATTCTG+TGG | 0.551364 | 3.1:-81983015 | MS.gene32845:CDS |
| GCTTGGCTCCTATCAAACTC+TGG | 0.552348 | 3.1:-81981380 | MS.gene32845:CDS |
| CTGAATAATCTATGATGCCA+AGG | 0.552941 | 3.1:+81983029 | None:intergenic |
| CGATCTTTGCTGCAAAAGCA+TGG | 0.556290 | 3.1:-81982379 | MS.gene32845:CDS |
| TTTCAGAGCATCTTTAGCCA+TGG | 0.556325 | 3.1:+81982799 | None:intergenic |
| AGGTACCAGTCTACATTGCT+TGG | 0.561267 | 3.1:-81981397 | MS.gene32845:CDS |
| TGATGAGGCTTTACAAAGAG+AGG | 0.563042 | 3.1:-81981850 | MS.gene32845:intron |
| TGAAACCTTTATGAATTACC+AGG | 0.564604 | 3.1:-81981350 | MS.gene32845:CDS |
| CTGAAAGCTGCAAATAACCT+TGG | 0.565159 | 3.1:-81982782 | MS.gene32845:CDS |
| GACGAGGAAATTGAAGCTGA+TGG | 0.566448 | 3.1:-81981619 | MS.gene32845:CDS |
| TTATTCAGCTATAATTCTGT+GGG | 0.566765 | 3.1:-81983014 | MS.gene32845:CDS |
| TACTCTGTCCGTGAAAGTTG+AGG | 0.580323 | 3.1:+81981307 | None:intergenic |
| GATTGGAGAGACATGTACCT+TGG | 0.581641 | 3.1:-81983046 | MS.gene32845:CDS |
| AGGAGCCAAGCAATGTAGAC+TGG | 0.584447 | 3.1:+81981392 | None:intergenic |
| AACAGCTGCTGGAGTTGGTG+TGG | 0.592073 | 3.1:-81982942 | MS.gene32845:CDS |
| TCAACTTTCACGGACAGAGT+AGG | 0.599877 | 3.1:-81981305 | None:intergenic |
| GATCGACGAATCGACTGAGT+AGG | 0.604180 | 3.1:+81982397 | None:intergenic |
| TGCTGCAGTAGGTGCAGTAG+TGG | 0.607069 | 3.1:-81982846 | MS.gene32845:CDS |
| AGCACCTCATCATTTCAAGC+CGG | 0.609948 | 3.1:+81981587 | None:intergenic |
| ACAACAACAGCTGCTGGAGT+TGG | 0.624041 | 3.1:-81982947 | MS.gene32845:CDS |
| AGCTGCAAATAACCTTGGTG+AGG | 0.634396 | 3.1:-81982777 | MS.gene32845:CDS |
| ATAAATCAAGAACTATTACC+TGG | 0.635307 | 3.1:+81981332 | None:intergenic |
| TGATAAGCAAGAACTTGATG+AGG | 0.638900 | 3.1:-81981865 | MS.gene32845:CDS |
| GCAGTAGGTGCAGTAGTGGT+AGG | 0.640998 | 3.1:-81982842 | MS.gene32845:CDS |
| GCAGATGAGGGAAGAAGACG+AGG | 0.653304 | 3.1:-81981635 | MS.gene32845:intron |
| AAAGCATCAAAGACTTCCAG+AGG | 0.656509 | 3.1:+81982457 | None:intergenic |
| ACAGCTGCTGGAGTTGGTGT+GGG | 0.669071 | 3.1:-81982941 | MS.gene32845:CDS |
| GTAGGTGCAGTAGTGGTAGG+TGG | 0.682399 | 3.1:-81982839 | MS.gene32845:CDS |
| ATTACCGGCTTGAAATGATG+AGG | 0.690694 | 3.1:-81981591 | MS.gene32845:intron |
| TTACTTTGTAGTCCTCACCA+AGG | 0.706826 | 3.1:+81982765 | None:intergenic |
| AGAACCCTTCAAGTCAACAA+CGG | 0.731950 | 3.1:-81982732 | MS.gene32845:intron |
| TGTTGCTGCAGATAAAACCA+TGG | 0.755367 | 3.1:-81982816 | MS.gene32845:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTATTAACAAATATAA+TGG | + | chr3.1:81982032-81982051 | None:intergenic | 10.0% |
| !! | AATTTATACAGTACAATTTA+TGG | - | chr3.1:81982376-81982395 | MS.gene32845:CDS | 15.0% |
| !! | ATTGCATCATATATTCAATA+AGG | + | chr3.1:81982565-81982584 | None:intergenic | 20.0% |
| !! | TTAATCACTTATCTAACATA+TGG | - | chr3.1:81982940-81982959 | MS.gene32845:CDS | 20.0% |
| !! | TTGATAAACACAATTTGATT+TGG | - | chr3.1:81982898-81982917 | MS.gene32845:CDS | 20.0% |
| ! | AAACATTTGTGAGACTATTT+GGG | - | chr3.1:81982149-81982168 | MS.gene32845:intron | 25.0% |
| ! | AATAAATGTCCTGTAATTAC+AGG | - | chr3.1:81982346-81982365 | MS.gene32845:intron | 25.0% |
| ! | ATAAATCAAGAACTATTACC+TGG | + | chr3.1:81983047-81983066 | None:intergenic | 25.0% |
| ! | ATTATTCAGCTATAATTCTG+TGG | - | chr3.1:81981361-81981380 | MS.gene32845:CDS | 25.0% |
| ! | TAAACATTTGTGAGACTATT+TGG | - | chr3.1:81982148-81982167 | MS.gene32845:intron | 25.0% |
| ! | TATTACCTGGTAATTCATAA+AGG | + | chr3.1:81983034-81983053 | None:intergenic | 25.0% |
| ! | TTATTCAGCTATAATTCTGT+GGG | - | chr3.1:81981362-81981381 | MS.gene32845:CDS | 25.0% |
| !! | TATTGAGCTTATTACACTTT+TGG | - | chr3.1:81981713-81981732 | MS.gene32845:intron | 25.0% |
| !! | TGTTTGGATTGATTTATTTG+AGG | - | chr3.1:81982112-81982131 | MS.gene32845:intron | 25.0% |
| !!! | ATTTCTAAAATTTGCAGATG+AGG | - | chr3.1:81982728-81982747 | MS.gene32845:intron | 25.0% |
| !!! | TTTCTAAAATTTGCAGATGA+GGG | - | chr3.1:81982729-81982748 | MS.gene32845:intron | 25.0% |
| ACTTATGTATGAGTCTTTCT+TGG | - | chr3.1:81982874-81982893 | MS.gene32845:CDS | 30.0% | |
| ATGATGCAATTTCACCTATT+TGG | - | chr3.1:81982575-81982594 | MS.gene32845:intron | 30.0% | |
| ATGGATAATTCTCTGAATCT+AGG | - | chr3.1:81982959-81982978 | MS.gene32845:CDS | 30.0% | |
| ATTTATCTCCTCAACTTTCA+CGG | - | chr3.1:81983061-81983080 | MS.gene32845:CDS | 30.0% | |
| GACAATAAATGCTACAACAA+TGG | + | chr3.1:81982084-81982103 | None:intergenic | 30.0% | |
| TGAAACCTTTATGAATTACC+AGG | - | chr3.1:81983026-81983045 | MS.gene32845:CDS | 30.0% | |
| TTGTAATGACCTGTAATTAC+AGG | + | chr3.1:81982358-81982377 | None:intergenic | 30.0% | |
| TTGTAGCATTTATTGTCTAG+AGG | - | chr3.1:81982087-81982106 | MS.gene32845:intron | 30.0% | |
| ! | CATTTATTGATTAAGCGTCT+AGG | + | chr3.1:81982334-81982353 | None:intergenic | 30.0% |
| ! | TTTTGTAATGCGGTAAAATG+CGG | + | chr3.1:81981841-81981860 | None:intergenic | 30.0% |
| !!! | GGTTTAAGCTTTTTTTTCCT+TGG | - | chr3.1:81981734-81981753 | MS.gene32845:intron | 30.0% |
| AAAATATCTCTCCCTAAGAG+AGG | - | chr3.1:81981777-81981796 | MS.gene32845:intron | 35.0% | |
| AAATCATACGTACCATCCAA+CGG | + | chr3.1:81982842-81982861 | None:intergenic | 35.0% | |
| CAGTACAATTTATGGAGTTG+TGG | - | chr3.1:81982384-81982403 | MS.gene32845:CDS | 35.0% | |
| CTGAATAATCTATGATGCCA+AGG | + | chr3.1:81981350-81981369 | None:intergenic | 35.0% | |
| TAATCATTGTCTTCATGTGC+AGG | - | chr3.1:81982441-81982460 | MS.gene32845:CDS | 35.0% | |
| TCAAAGATTTCTCTCAACCA+AGG | + | chr3.1:81981754-81981773 | None:intergenic | 35.0% | |
| TCAAGTTCTTGCTTATCATC+TGG | + | chr3.1:81982509-81982528 | None:intergenic | 35.0% | |
| TGATAAGCAAGAACTTGATG+AGG | - | chr3.1:81982511-81982530 | MS.gene32845:intron | 35.0% | |
| ! | CACAGTGAACTTTTGTAATG+CGG | + | chr3.1:81981851-81981870 | None:intergenic | 35.0% |
| ! | TTATTGTCTAGAGGCATGTT+TGG | - | chr3.1:81982096-81982115 | MS.gene32845:intron | 35.0% |
| !!! | GTCACAAGGGTTTTAAATTG+TGG | + | chr3.1:81981883-81981902 | None:intergenic | 35.0% |
| AATCAGCTCCAGAGTTTGAT+AGG | + | chr3.1:81983007-81983026 | None:intergenic | 40.0% | |
| AATGTGGACGATAATACCGT+TGG | - | chr3.1:81982823-81982842 | MS.gene32845:CDS | 40.0% | |
| ACTGAGTAGGATGAGCAATT+AGG | + | chr3.1:81981969-81981988 | None:intergenic | 40.0% | |
| AGAAATGGTCTCCTCTCTTA+GGG | + | chr3.1:81981791-81981810 | None:intergenic | 40.0% | |
| AGAACCCTTCAAGTCAACAA+CGG | - | chr3.1:81981644-81981663 | MS.gene32845:intron | 40.0% | |
| AGCTATAATTCTGTGGGTGA+TGG | - | chr3.1:81981368-81981387 | MS.gene32845:CDS | 40.0% | |
| CATCATTTCAAGCCGGTAAT+TGG | + | chr3.1:81982785-81982804 | None:intergenic | 40.0% | |
| CTGAAAGCTGCAAATAACCT+TGG | - | chr3.1:81981594-81981613 | MS.gene32845:CDS | 40.0% | |
| CTTCTTGAGTTCAGTCACAA+GGG | + | chr3.1:81981896-81981915 | None:intergenic | 40.0% | |
| GAGTCATCTGAATGCCAAAT+AGG | + | chr3.1:81982592-81982611 | None:intergenic | 40.0% | |
| TAGAAATGGTCTCCTCTCTT+AGG | + | chr3.1:81981792-81981811 | None:intergenic | 40.0% | |
| TCTTCTTGAGTTCAGTCACA+AGG | + | chr3.1:81981897-81981916 | None:intergenic | 40.0% | |
| TGATGAGGCTTTACAAAGAG+AGG | - | chr3.1:81982526-81982545 | MS.gene32845:intron | 40.0% | |
| TGTTGCTGCAGATAAAACCA+TGG | - | chr3.1:81981560-81981579 | MS.gene32845:intron | 40.0% | |
| TTAAGCGTCTAGGTCATGTT+TGG | + | chr3.1:81982324-81982343 | None:intergenic | 40.0% | |
| TTACTTTGTAGTCCTCACCA+AGG | + | chr3.1:81981614-81981633 | None:intergenic | 40.0% | |
| TTGTCTTCATGTGCAGGATA+AGG | - | chr3.1:81982447-81982466 | MS.gene32845:CDS | 40.0% | |
| TTGTGGCAATTTCTGCACTA+AGG | - | chr3.1:81982401-81982420 | MS.gene32845:CDS | 40.0% | |
| ! | AAAGCATCAAAGACTTCCAG+AGG | + | chr3.1:81981922-81981941 | None:intergenic | 40.0% |
| ! | TTTCAGAGCATCTTTAGCCA+TGG | + | chr3.1:81981580-81981599 | None:intergenic | 40.0% |
| !! | AATGATGAGGTGCTTTTGAG+AGG | - | chr3.1:81982798-81982817 | MS.gene32845:CDS | 40.0% |
| !! | ATTACCGGCTTGAAATGATG+AGG | - | chr3.1:81982785-81982804 | MS.gene32845:CDS | 40.0% |
| !! | CTTACCGTTGTTGACTTGAA+GGG | + | chr3.1:81981651-81981670 | None:intergenic | 40.0% |
| AGCACCTCATCATTTCAAGC+CGG | + | chr3.1:81982792-81982811 | None:intergenic | 45.0% | |
| AGCTGCAAATAACCTTGGTG+AGG | - | chr3.1:81981599-81981618 | MS.gene32845:CDS | 45.0% | |
| AGGTACCAGTCTACATTGCT+TGG | - | chr3.1:81982979-81982998 | MS.gene32845:CDS | 45.0% | |
| CAACAACGGTAAGCAAACGA+TGG | - | chr3.1:81981658-81981677 | MS.gene32845:intron | 45.0% | |
| CAGCATGTCTCAGCTAGAAA+TGG | + | chr3.1:81981806-81981825 | None:intergenic | 45.0% | |
| CGATCTTTGCTGCAAAAGCA+TGG | - | chr3.1:81981997-81982016 | MS.gene32845:intron | 45.0% | |
| GACGAGGAAATTGAAGCTGA+TGG | - | chr3.1:81982757-81982776 | MS.gene32845:CDS | 45.0% | |
| GATTGGAGAGACATGTACCT+TGG | - | chr3.1:81981330-81981349 | MS.gene32845:CDS | 45.0% | |
| GCAATAGCATTAGGAGCTAC+AGG | - | chr3.1:81981477-81981496 | MS.gene32845:intron | 45.0% | |
| TACTCTGTCCGTGAAAGTTG+AGG | + | chr3.1:81983072-81983091 | None:intergenic | 45.0% | |
| TGAACTCAAGAAGACTCCTC+TGG | - | chr3.1:81981903-81981922 | MS.gene32845:CDS | 45.0% | |
| TGGACGATAATACCGTTGGA+TGG | - | chr3.1:81982827-81982846 | MS.gene32845:CDS | 45.0% | |
| ! | AAGCTGATGGTGCCAATTAC+CGG | - | chr3.1:81982770-81982789 | MS.gene32845:CDS | 45.0% |
| ! | CTTTGCTGCAAAAGCATGGA+AGG | - | chr3.1:81982001-81982020 | MS.gene32845:intron | 45.0% |
| ! | GAGCAGGAATTGGTTCAGAT+TGG | - | chr3.1:81981313-81981332 | MS.gene32845:CDS | 45.0% |
| !! | CATTTCTAGCTGAGACATGC+TGG | - | chr3.1:81981804-81981823 | MS.gene32845:intron | 45.0% |
| !! | GCTTACCGTTGTTGACTTGA+AGG | + | chr3.1:81981652-81981671 | None:intergenic | 45.0% |
| !! | GCTTTGGGAGCAATAGCATT+AGG | - | chr3.1:81981468-81981487 | MS.gene32845:intron | 45.0% |
| !! | GTGCTTTTGAGAGGTCAATG+TGG | - | chr3.1:81982807-81982826 | MS.gene32845:CDS | 45.0% |
| ACAACAACAGCTGCTGGAGT+TGG | - | chr3.1:81981429-81981448 | MS.gene32845:intron | 50.0% | |
| AGGAGCCAAGCAATGTAGAC+TGG | + | chr3.1:81982987-81983006 | None:intergenic | 50.0% | |
| GATCGACGAATCGACTGAGT+AGG | + | chr3.1:81981982-81982001 | None:intergenic | 50.0% | |
| GCTGCAGTTGCTCTATTAGC+TGG | - | chr3.1:81981405-81981424 | MS.gene32845:intron | 50.0% | |
| GCTTGGCTCCTATCAAACTC+TGG | - | chr3.1:81982996-81983015 | MS.gene32845:CDS | 50.0% | |
| TACAGGTCCTGCTGCAATTG+CGG | - | chr3.1:81981494-81981513 | MS.gene32845:intron | 50.0% | |
| ACAGGTCCTGCTGCAATTGC+GGG | - | chr3.1:81981495-81981514 | MS.gene32845:intron | 55.0% | |
| CTAACAGCTGCTGCTGCAGT+AGG | - | chr3.1:81981519-81981538 | MS.gene32845:intron | 55.0% | |
| GCAGATGAGGGAAGAAGACG+AGG | - | chr3.1:81982741-81982760 | MS.gene32845:CDS | 55.0% | |
| GCAGTAGGTGCAGTAGTGGT+AGG | - | chr3.1:81981534-81981553 | MS.gene32845:intron | 55.0% | |
| GCTGGTACAACAACAGCTGC+TGG | - | chr3.1:81981423-81981442 | MS.gene32845:intron | 55.0% | |
| GTAGGTGCAGTAGTGGTAGG+TGG | - | chr3.1:81981537-81981556 | MS.gene32845:intron | 55.0% | |
| GTTAGTCCCGCAATTGCAGC+AGG | + | chr3.1:81981504-81981523 | None:intergenic | 55.0% | |
| TGCTGCAGTAGGTGCAGTAG+TGG | - | chr3.1:81981530-81981549 | MS.gene32845:intron | 55.0% | |
| ! | GTGGGAACTGTCGGTGCTTT+GGG | - | chr3.1:81981453-81981472 | MS.gene32845:intron | 55.0% |
| ! | TGTGGGAACTGTCGGTGCTT+TGG | - | chr3.1:81981452-81981471 | MS.gene32845:intron | 55.0% |
| !! | AACAGCTGCTGGAGTTGGTG+TGG | - | chr3.1:81981434-81981453 | MS.gene32845:intron | 55.0% |
| !! | ACAGCTGCTGGAGTTGGTGT+GGG | - | chr3.1:81981435-81981454 | MS.gene32845:intron | 55.0% |
| !! | GGAGTTGGTGTGGGAACTGT+CGG | - | chr3.1:81981444-81981463 | MS.gene32845:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81981306 | 81983092 | 81981306 | ID=MS.gene32845 |
| chr3.1 | mRNA | 81981306 | 81983092 | 81981306 | ID=MS.gene32845.t1;Parent=MS.gene32845 |
| chr3.1 | exon | 81982733 | 81983092 | 81982733 | ID=MS.gene32845.t1.exon1;Parent=MS.gene32845.t1 |
| chr3.1 | CDS | 81982733 | 81983092 | 81982733 | ID=cds.MS.gene32845.t1;Parent=MS.gene32845.t1 |
| chr3.1 | exon | 81982376 | 81982485 | 81982376 | ID=MS.gene32845.t1.exon2;Parent=MS.gene32845.t1 |
| chr3.1 | CDS | 81982376 | 81982485 | 81982376 | ID=cds.MS.gene32845.t1;Parent=MS.gene32845.t1 |
| chr3.1 | exon | 81981851 | 81981935 | 81981851 | ID=MS.gene32845.t1.exon3;Parent=MS.gene32845.t1 |
| chr3.1 | CDS | 81981851 | 81981935 | 81981851 | ID=cds.MS.gene32845.t1;Parent=MS.gene32845.t1 |
| chr3.1 | exon | 81981592 | 81981653 | 81981592 | ID=MS.gene32845.t1.exon4;Parent=MS.gene32845.t1 |
| chr3.1 | CDS | 81981592 | 81981653 | 81981592 | ID=cds.MS.gene32845.t1;Parent=MS.gene32845.t1 |
| chr3.1 | exon | 81981306 | 81981417 | 81981306 | ID=MS.gene32845.t1.exon5;Parent=MS.gene32845.t1 |
| chr3.1 | CDS | 81981306 | 81981417 | 81981306 | ID=cds.MS.gene32845.t1;Parent=MS.gene32845.t1 |
| Gene Sequence |
| Protein sequence |
