Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060905.t1 | AGX84978.1 | 97.9 | 384 | 8 | 0 | 1 | 384 | 1 | 384 | 2.80E-217 | 764.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060905.t1 | A0A072VEP0 | 97.1 | 384 | 11 | 0 | 1 | 384 | 1 | 384 | 4.9e-218 | 758.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060905.t1 | A0A2K3NGX0 | 87.0 | 369 | 47 | 1 | 16 | 384 | 1 | 368 | 1.7e-184 | 654.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051198 | MS.gene060905 | 0.802185 | 6.33E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene06269 | 0.805013 | 1.64E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene067410 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene060905 | MS.gene072067 | 0.803716 | 3.05E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene073008 | 0.807633 | 4.59E-50 | -1.69E-46 |
| MS.gene060905 | MS.gene30487 | 0.84575 | 3.34E-59 | -1.69E-46 |
| MS.gene060905 | MS.gene32845 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene33644 | 0.803024 | 4.25E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene50493 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene060905 | MS.gene58686 | 0.827868 | 1.23E-54 | -1.69E-46 |
| MS.gene060905 | MS.gene66405 | 0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene060905 | MS.gene66413 | 0.827713 | 1.34E-54 | -1.69E-46 |
| MS.gene060905 | MS.gene70957 | 0.801253 | 9.82E-49 | -1.69E-46 |
| MS.gene060905 | MS.gene83538 | 0.80073 | 1.26E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060905.t1 | MTR_1g013150 | 97.135 | 384 | 11 | 0 | 1 | 384 | 1 | 384 | 0.0 | 775 |
| MS.gene060905.t1 | MTR_4g117000 | 47.093 | 344 | 179 | 2 | 40 | 382 | 35 | 376 | 5.08e-108 | 322 |
| MS.gene060905.t1 | MTR_4g116990 | 49.713 | 348 | 168 | 3 | 40 | 382 | 37 | 382 | 6.28e-106 | 317 |
| MS.gene060905.t1 | MTR_3g110320 | 35.674 | 356 | 212 | 5 | 32 | 383 | 22 | 364 | 8.05e-66 | 213 |
| MS.gene060905.t1 | MTR_3g110280 | 36.286 | 350 | 205 | 5 | 32 | 376 | 22 | 358 | 6.55e-64 | 208 |
| MS.gene060905.t1 | MTR_3g110320 | 35.244 | 349 | 209 | 5 | 32 | 376 | 22 | 357 | 6.39e-63 | 206 |
| MS.gene060905.t1 | MTR_4g117040 | 34.865 | 370 | 224 | 4 | 13 | 378 | 8 | 364 | 2.68e-60 | 208 |
| MS.gene060905.t1 | MTR_4g116920 | 34.211 | 342 | 197 | 6 | 37 | 376 | 28 | 343 | 1.08e-53 | 182 |
| MS.gene060905.t1 | MTR_4g117020 | 32.791 | 369 | 231 | 5 | 13 | 378 | 8 | 362 | 1.28e-53 | 189 |
| MS.gene060905.t1 | MTR_4g117030 | 33.537 | 328 | 209 | 3 | 54 | 378 | 4 | 325 | 1.73e-49 | 177 |
| MS.gene060905.t1 | MTR_4g117800 | 28.188 | 149 | 107 | 0 | 40 | 188 | 28 | 176 | 2.48e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060905.t1 | AT4G19810 | 41.449 | 345 | 194 | 3 | 40 | 382 | 28 | 366 | 3.11e-88 | 271 |
| MS.gene060905.t1 | AT4G19810 | 41.449 | 345 | 194 | 3 | 40 | 382 | 28 | 366 | 3.11e-88 | 271 |
| MS.gene060905.t1 | AT4G19800 | 40.762 | 341 | 195 | 2 | 40 | 379 | 7 | 341 | 2.39e-83 | 259 |
| MS.gene060905.t1 | AT4G19820 | 37.681 | 345 | 207 | 3 | 40 | 382 | 26 | 364 | 4.73e-75 | 237 |
| MS.gene060905.t1 | AT4G19750 | 37.465 | 355 | 209 | 5 | 32 | 379 | 4 | 352 | 5.65e-73 | 232 |
| MS.gene060905.t1 | AT4G19760 | 37.772 | 368 | 206 | 7 | 32 | 382 | 4 | 365 | 1.36e-72 | 231 |
| MS.gene060905.t1 | AT4G19720 | 35.674 | 356 | 205 | 5 | 40 | 382 | 6 | 350 | 1.26e-67 | 218 |
| MS.gene060905.t1 | AT4G19730 | 36.308 | 325 | 187 | 6 | 40 | 350 | 14 | 332 | 5.35e-57 | 189 |
| MS.gene060905.t1 | AT4G19770 | 39.464 | 261 | 151 | 2 | 121 | 380 | 1 | 255 | 4.22e-56 | 185 |
| MS.gene060905.t1 | AT4G19740 | 37.949 | 195 | 112 | 4 | 144 | 336 | 24 | 211 | 5.56e-29 | 112 |
Find 96 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCATAATAACACCAATTT+TGG | 0.129479 | 1.2:-8519273 | MS.gene060905:CDS |
| TCCGAAATTAGTACCAATTT+TGG | 0.140026 | 1.2:-8518549 | MS.gene060905:CDS |
| AACATGTCTTGTTGAGTTTC+AGG | 0.150216 | 1.2:+8518828 | None:intergenic |
| GCTTGAAAGGCTATTTCTTT+TGG | 0.189483 | 1.2:-8518218 | MS.gene060905:CDS |
| AATTCCACTATTAGGCTTAT+TGG | 0.189535 | 1.2:-8518705 | MS.gene060905:CDS |
| TCCAAAATTGGTACTAATTT+CGG | 0.232381 | 1.2:+8518548 | None:intergenic |
| ATTTCAAGTTTGAAGGAAAT+TGG | 0.266881 | 1.2:+8519071 | None:intergenic |
| GTTATGGGTTTGGCTTTATA+TGG | 0.270864 | 1.2:-8518483 | MS.gene060905:CDS |
| CGGGATGGGAGCGGAGGCGG+TGG | 0.326277 | 1.2:-8518427 | MS.gene060905:CDS |
| TTTACTACAATTCCACTATT+AGG | 0.333490 | 1.2:-8518713 | MS.gene060905:CDS |
| CCATGAGTGGAGTCCAAAAT+TGG | 0.343332 | 1.2:+8518536 | None:intergenic |
| GCTCCCATCCCGTTGACATT+TGG | 0.344172 | 1.2:+8518438 | None:intergenic |
| CGACCTGAAAAGTTGGTTAT+GGG | 0.357426 | 1.2:-8518498 | MS.gene060905:CDS |
| TGAAAAGTTGGTTATGGGTT+TGG | 0.358876 | 1.2:-8518493 | MS.gene060905:CDS |
| GGTTCGGTTCGCTAAGTCCT+TGG | 0.370835 | 1.2:-8518241 | MS.gene060905:CDS |
| CCAAGTACTTATTGATAGCT+TGG | 0.371181 | 1.2:+8518655 | None:intergenic |
| AGTTTGAAGGAAATTGGTTC+TGG | 0.383577 | 1.2:+8519077 | None:intergenic |
| TCGACCTGAAAAGTTGGTTA+TGG | 0.384573 | 1.2:-8518499 | MS.gene060905:CDS |
| TGATGATACATTGAAGAAAA+TGG | 0.402523 | 1.2:+8519238 | None:intergenic |
| CAACGGGATGGGAGCGGAGG+CGG | 0.402624 | 1.2:-8518430 | MS.gene060905:CDS |
| GGCTTTATATGGACGGGCAT+GGG | 0.405053 | 1.2:-8518472 | MS.gene060905:CDS |
| CTACCATCCGTGTCAGTTGC+AGG | 0.408728 | 1.2:+8518402 | None:intergenic |
| TTGGGCCCTTGGAAAGGATA+AGG | 0.413790 | 1.2:-8518199 | MS.gene060905:CDS |
| TCACCGGTGGGGAACGGTGG+CGG | 0.416311 | 1.2:+8519003 | None:intergenic |
| TTGATGGTGTTGACTTGGAT+TGG | 0.425039 | 1.2:-8518857 | MS.gene060905:CDS |
| TGGCTTTATATGGACGGGCA+TGG | 0.427794 | 1.2:-8518473 | MS.gene060905:CDS |
| GTTCGGTTCGCTAAGTCCTT+GGG | 0.429784 | 1.2:-8518240 | MS.gene060905:CDS |
| AAACTTGAAATCACAAAATC+CGG | 0.429982 | 1.2:-8519059 | MS.gene060905:CDS |
| ATTCTTATGCGGGTACTACT+TGG | 0.429992 | 1.2:-8518299 | MS.gene060905:CDS |
| TGATGGTGTTGACTTGGATT+GGG | 0.444533 | 1.2:-8518856 | MS.gene060905:CDS |
| TGCTTTGTTTGCTGAAGCTA+AGG | 0.450605 | 1.2:-8518772 | MS.gene060905:CDS |
| CAAGTACTTATTGATAGCTT+GGG | 0.452795 | 1.2:+8518656 | None:intergenic |
| CTTTATAAATTCAACAATCC+AGG | 0.460012 | 1.2:-8518898 | MS.gene060905:CDS |
| GGTACGTGGGATAATAATAC+TGG | 0.460041 | 1.2:-8518600 | MS.gene060905:CDS |
| TTTACCAATAAGCCTAATAG+TGG | 0.463161 | 1.2:+8518701 | None:intergenic |
| ACTCCACTCATGGATCAAAT+CGG | 0.467968 | 1.2:-8518526 | MS.gene060905:CDS |
| TATCAATAAGTACTTGGATT+GGG | 0.475004 | 1.2:-8518649 | MS.gene060905:CDS |
| CTATCAATAAGTACTTGGAT+TGG | 0.484721 | 1.2:-8518650 | MS.gene060905:CDS |
| TGAAGGATCCAAATGTCAAC+GGG | 0.489595 | 1.2:-8518446 | MS.gene060905:CDS |
| TCCAATCCTTATCCTTTCCA+AGG | 0.490077 | 1.2:+8518193 | None:intergenic |
| TGTTTGCAGCTTCAAATGCA+TGG | 0.493710 | 1.2:-8517896 | MS.gene060905:intron |
| GTTTGCAGCTTCAAATGCAT+GGG | 0.495180 | 1.2:-8517895 | MS.gene060905:intron |
| TGGGTTTGGCTTTATATGGA+CGG | 0.499065 | 1.2:-8518479 | MS.gene060905:CDS |
| GCTTGGGCCGGGTACGATCT+CGG | 0.499400 | 1.2:+8518672 | None:intergenic |
| TGAATTTGATGGTGTTGACT+TGG | 0.499430 | 1.2:-8518862 | MS.gene060905:CDS |
| CTCCACTCATGGATCAAATC+GGG | 0.499458 | 1.2:-8518525 | MS.gene060905:CDS |
| TGTTTGCTGAAGCTAAGGTT+AGG | 0.499494 | 1.2:-8518767 | MS.gene060905:CDS |
| CAACAAGACATGTTTAACCT+TGG | 0.500039 | 1.2:-8518819 | MS.gene060905:CDS |
| TACTTATTGATAGCTTGGGC+CGG | 0.504309 | 1.2:+8518660 | None:intergenic |
| CCAAGCTATCAATAAGTACT+TGG | 0.505828 | 1.2:-8518655 | MS.gene060905:CDS |
| GGGTTTGGCTTTATATGGAC+GGG | 0.509864 | 1.2:-8518478 | MS.gene060905:CDS |
| GCAAGAAAATATGAATTTGA+TGG | 0.510078 | 1.2:-8518873 | MS.gene060905:CDS |
| TTGGTTTGTTGTACGAGGAA+TGG | 0.511153 | 1.2:-8518800 | MS.gene060905:CDS |
| TTGAAGTTTAATAAAGAGAG+TGG | 0.514869 | 1.2:-8518360 | MS.gene060905:CDS |
| GCTAAGTCCTTGGGCTTGAA+AGG | 0.515514 | 1.2:-8518231 | MS.gene060905:CDS |
| TATGCGGGTACTACTTGGAT+CGG | 0.520264 | 1.2:-8518294 | MS.gene060905:CDS |
| CCAATCCTTATCCTTTCCAA+GGG | 0.521074 | 1.2:+8518194 | None:intergenic |
| AGATCAGCATATTGGCCAGC+AGG | 0.522729 | 1.2:-8519167 | MS.gene060905:CDS |
| ATTAGGCTTATTGGTAAACA+TGG | 0.529975 | 1.2:-8518696 | MS.gene060905:CDS |
| CTTCGATAACGACTAAGGTT+CGG | 0.530221 | 1.2:-8518257 | MS.gene060905:CDS |
| ACATGGGCCGAGATCGTACC+CGG | 0.530523 | 1.2:-8518679 | MS.gene060905:CDS |
| GATCCAAATGTCAACGGGAT+GGG | 0.531001 | 1.2:-8518441 | MS.gene060905:CDS |
| ATGGTGTTAGATCAGCATAT+TGG | 0.535251 | 1.2:-8519175 | MS.gene060905:CDS |
| ACTTATTGATAGCTTGGGCC+GGG | 0.536742 | 1.2:+8518661 | None:intergenic |
| TGTCAACGGGATGGGAGCGG+AGG | 0.542325 | 1.2:-8518433 | MS.gene060905:CDS |
| CCCTTGGAAAGGATAAGGAT+TGG | 0.544133 | 1.2:-8518194 | MS.gene060905:CDS |
| TGCTAATGTTGTGTATGATA+AGG | 0.544471 | 1.2:-8518337 | MS.gene060905:CDS |
| ATGCGGGTACTACTTGGATC+GGG | 0.546312 | 1.2:-8518293 | MS.gene060905:CDS |
| CTTGGATCGGGTATGATGAC+GGG | 0.552269 | 1.2:-8518281 | MS.gene060905:CDS |
| ACTTGGATCGGGTATGATGA+CGG | 0.552521 | 1.2:-8518282 | MS.gene060905:CDS |
| CGGGCCTTCGATAACGACTA+AGG | 0.552570 | 1.2:-8518262 | MS.gene060905:CDS |
| GAAATAGCCTTTCAAGCCCA+AGG | 0.566378 | 1.2:+8518224 | None:intergenic |
| GGATCCAAATGTCAACGGGA+TGG | 0.567469 | 1.2:-8518442 | MS.gene060905:CDS |
| TGGACGGGCATGGGAGCTGA+AGG | 0.569819 | 1.2:-8518463 | MS.gene060905:CDS |
| AAATGTCAACGGGATGGGAG+CGG | 0.573317 | 1.2:-8518436 | MS.gene060905:CDS |
| GTTCTGGTTGAATGAAAGCA+AGG | 0.575522 | 1.2:+8519093 | None:intergenic |
| TAGTTTGTGTCAATCAAAGA+AGG | 0.588638 | 1.2:+8519131 | None:intergenic |
| ACTCCGCCACCGTTCCCCAC+CGG | 0.590918 | 1.2:-8519006 | MS.gene060905:CDS |
| GGGTGTTCGACCTGAAAAGT+TGG | 0.591114 | 1.2:-8518505 | MS.gene060905:CDS |
| CTGAAGGATCCAAATGTCAA+CGG | 0.591594 | 1.2:-8518447 | MS.gene060905:CDS |
| GGGATGGGAGCGGAGGCGGT+GGG | 0.595624 | 1.2:-8518426 | MS.gene060905:CDS |
| GTTTCGATTATCACGGTACG+TGG | 0.604563 | 1.2:-8518614 | MS.gene060905:CDS |
| TAACCTTGGTTTGTTGTACG+AGG | 0.617085 | 1.2:-8518805 | MS.gene060905:CDS |
| GGTGGGACCTGCAACTGACA+CGG | 0.621426 | 1.2:-8518409 | MS.gene060905:CDS |
| CCAATGTGTTTCGATTATCA+CGG | 0.625563 | 1.2:-8518621 | MS.gene060905:CDS |
| TTTGCAGCTTCAAATGCATG+GGG | 0.637832 | 1.2:-8517894 | MS.gene060905:intron |
| TTAGGCTTATTGGTAAACAT+GGG | 0.638925 | 1.2:-8518695 | MS.gene060905:CDS |
| CACCCGATTTGATCCATGAG+TGG | 0.643006 | 1.2:+8518523 | None:intergenic |
| TATAAATTCAACAATCCAGG+TGG | 0.643235 | 1.2:-8518895 | MS.gene060905:CDS |
| CCGTGATAATCGAAACACAT+TGG | 0.644242 | 1.2:+8518621 | None:intergenic |
| GGACCTGCAACTGACACGGA+TGG | 0.660097 | 1.2:-8518405 | MS.gene060905:CDS |
| GATTGGACAATCTCAAAACA+AGG | 0.669046 | 1.2:-8518177 | MS.gene060905:intron |
| ATTCCTCGTACAACAAACCA+AGG | 0.669048 | 1.2:+8518802 | None:intergenic |
| TTTCGATTATCACGGTACGT+GGG | 0.671850 | 1.2:-8518613 | MS.gene060905:CDS |
| CGAACCTTAGTCGTTATCGA+AGG | 0.683334 | 1.2:+8518258 | None:intergenic |
| GCAGAAGTCAAAAGTAAACG+TGG | 0.720413 | 1.2:+8518738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAGAATATATATTTA+AGG | + | chr1.2:8519095-8519114 | None:intergenic | 10.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | chr1.2:8517988-8518007 | None:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | chr1.2:8517901-8517920 | MS.gene060905:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | chr1.2:8517980-8517999 | MS.gene060905:intron | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | chr1.2:8517894-8517913 | None:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | chr1.2:8517898-8517917 | None:intergenic | 20.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | chr1.2:8518115-8518134 | MS.gene060905:intron | 25.0% |
| ! | ACAAATATAAGAAGACATCA+TGG | + | chr1.2:8519248-8519267 | None:intergenic | 25.0% |
| ! | CTTTATAAATTCAACAATCC+AGG | - | chr1.2:8518276-8518295 | MS.gene060905:CDS | 25.0% |
| ! | GCAAGAAAATATGAATTTGA+TGG | - | chr1.2:8518301-8518320 | MS.gene060905:CDS | 25.0% |
| ! | TATCAATAAGTACTTGGATT+GGG | - | chr1.2:8518525-8518544 | MS.gene060905:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | chr1.2:8518629-8518648 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | chr1.2:8517939-8517958 | None:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | chr1.2:8518814-8518833 | MS.gene060905:CDS | 25.0% |
| ! | TTTACTACAATTCCACTATT+AGG | - | chr1.2:8518461-8518480 | MS.gene060905:CDS | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | chr1.2:8518193-8518212 | MS.gene060905:CDS | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | chr1.2:8518190-8518209 | MS.gene060905:CDS | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | chr1.2:8518190-8518209 | None:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | chr1.2:8518106-8518125 | None:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | chr1.2:8518113-8518132 | None:intergenic | 25.0% |
| AATTCCACTATTAGGCTTAT+TGG | - | chr1.2:8518469-8518488 | MS.gene060905:CDS | 30.0% | |
| ATTAGGCTTATTGGTAAACA+TGG | - | chr1.2:8518478-8518497 | MS.gene060905:CDS | 30.0% | |
| CGCATAAGAATAAAAAGACA+CGG | + | chr1.2:8518866-8518885 | None:intergenic | 30.0% | |
| CTATCAATAAGTACTTGGAT+TGG | - | chr1.2:8518524-8518543 | MS.gene060905:CDS | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | chr1.2:8517917-8517936 | None:intergenic | 30.0% | |
| TAAGAAGACATCATGGATAT+AGG | + | chr1.2:8519241-8519260 | None:intergenic | 30.0% | |
| TATAAATTCAACAATCCAGG+TGG | - | chr1.2:8518279-8518298 | MS.gene060905:CDS | 30.0% | |
| TGCTAATGTTGTGTATGATA+AGG | - | chr1.2:8518837-8518856 | MS.gene060905:CDS | 30.0% | |
| TTAGGCTTATTGGTAAACAT+GGG | - | chr1.2:8518479-8518498 | MS.gene060905:CDS | 30.0% | |
| TTTACCAATAAGCCTAATAG+TGG | + | chr1.2:8518476-8518495 | None:intergenic | 30.0% | |
| ! | CAAGTACTTATTGATAGCTT+GGG | + | chr1.2:8518521-8518540 | None:intergenic | 30.0% |
| ! | CGTGTCTTTTTATTCTTATG+CGG | - | chr1.2:8518864-8518883 | MS.gene060905:CDS | 30.0% |
| ! | GTGTCTTTTTATTCTTATGC+GGG | - | chr1.2:8518865-8518884 | MS.gene060905:CDS | 30.0% |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | chr1.2:8518046-8518065 | None:intergenic | 30.0% |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | chr1.2:8518625-8518644 | MS.gene060905:CDS | 30.0% |
| !!! | CTTGAAAGGCTATTTCTTTT+GGG | - | chr1.2:8518957-8518976 | MS.gene060905:CDS | 30.0% |
| ACAAAATCCGGCAAAAAATG+GGG | - | chr1.2:8518127-8518146 | MS.gene060905:intron | 35.0% | |
| CAACAAGACATGTTTAACCT+TGG | - | chr1.2:8518355-8518374 | MS.gene060905:CDS | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | chr1.2:8518126-8518145 | MS.gene060905:intron | 35.0% | |
| CCAAGCTATCAATAAGTACT+TGG | - | chr1.2:8518519-8518538 | MS.gene060905:CDS | 35.0% | |
| CCAATGTGTTTCGATTATCA+CGG | - | chr1.2:8518553-8518572 | MS.gene060905:CDS | 35.0% | |
| GATTGGACAATCTCAAAACA+AGG | - | chr1.2:8518997-8519016 | MS.gene060905:CDS | 35.0% | |
| TCACAAAATCCGGCAAAAAA+TGG | - | chr1.2:8518125-8518144 | MS.gene060905:intron | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | chr1.2:8518682-8518701 | None:intergenic | 35.0% |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | chr1.2:8518349-8518368 | None:intergenic | 35.0% |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | chr1.2:8518196-8518215 | MS.gene060905:CDS | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | chr1.2:8518100-8518119 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | chr1.2:8517999-8518018 | MS.gene060905:intron | 35.0% |
| ! | ATTCATATTTTCTTGCCACC+TGG | + | chr1.2:8518297-8518316 | None:intergenic | 35.0% |
| ! | CCAAGTACTTATTGATAGCT+TGG | + | chr1.2:8518522-8518541 | None:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | chr1.2:8518681-8518700 | MS.gene060905:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | chr1.2:8518691-8518710 | MS.gene060905:CDS | 35.0% |
| !! | TGAATTTGATGGTGTTGACT+TGG | - | chr1.2:8518312-8518331 | MS.gene060905:CDS | 35.0% |
| !!! | ATAAAAGTGTTTTCACCGGT+GGG | + | chr1.2:8518186-8518205 | None:intergenic | 35.0% |
| !!! | GCTTGAAAGGCTATTTCTTT+TGG | - | chr1.2:8518956-8518975 | MS.gene060905:CDS | 35.0% |
| ACTCCACTCATGGATCAAAT+CGG | - | chr1.2:8518648-8518667 | MS.gene060905:CDS | 40.0% | |
| ATTCCTCGTACAACAAACCA+AGG | + | chr1.2:8518375-8518394 | None:intergenic | 40.0% | |
| ATTCTTATGCGGGTACTACT+TGG | - | chr1.2:8518875-8518894 | MS.gene060905:CDS | 40.0% | |
| CCAATCCTTATCCTTTCCAA+GGG | + | chr1.2:8518983-8519002 | None:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | chr1.2:8518556-8518575 | None:intergenic | 40.0% | |
| CTGAAGGATCCAAATGTCAA+CGG | - | chr1.2:8518727-8518746 | MS.gene060905:CDS | 40.0% | |
| CTTCGATAACGACTAAGGTT+CGG | - | chr1.2:8518917-8518936 | MS.gene060905:CDS | 40.0% | |
| GCAGAAGTCAAAAGTAAACG+TGG | + | chr1.2:8518439-8518458 | None:intergenic | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | chr1.2:8518574-8518593 | MS.gene060905:CDS | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | chr1.2:8519279-8519298 | MS.gene060905:CDS | 40.0% | |
| TCCAATCCTTATCCTTTCCA+AGG | + | chr1.2:8518984-8519003 | None:intergenic | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | chr1.2:8518728-8518747 | MS.gene060905:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | chr1.2:8519278-8519297 | MS.gene060905:CDS | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | chr1.2:8518561-8518580 | MS.gene060905:CDS | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | chr1.2:8519280-8519299 | MS.gene060905:CDS | 40.0% | |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | chr1.2:8518676-8518695 | MS.gene060905:CDS | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | chr1.2:8518199-8518218 | MS.gene060905:CDS | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | chr1.2:8518084-8518103 | None:intergenic | 40.0% |
| ! | TACTTATTGATAGCTTGGGC+CGG | + | chr1.2:8518517-8518536 | None:intergenic | 40.0% |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | chr1.2:8518675-8518694 | MS.gene060905:CDS | 40.0% |
| ! | TGTTTGCTGAAGCTAAGGTT+AGG | - | chr1.2:8518407-8518426 | MS.gene060905:CDS | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | chr1.2:8518369-8518388 | MS.gene060905:CDS | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | chr1.2:8518318-8518337 | MS.gene060905:CDS | 40.0% |
| !! | TGCTTTGTTTGCTGAAGCTA+AGG | - | chr1.2:8518402-8518421 | MS.gene060905:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | chr1.2:8518695-8518714 | MS.gene060905:CDS | 40.0% |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | chr1.2:8518317-8518336 | MS.gene060905:CDS | 40.0% |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | chr1.2:8518374-8518393 | MS.gene060905:CDS | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | chr1.2:8518137-8518156 | None:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+TGG | + | chr1.2:8518187-8518206 | None:intergenic | 40.0% |
| !!! | TAAAAGTGTTTTCACCGGTG+GGG | + | chr1.2:8518185-8518204 | None:intergenic | 40.0% |
| ACTTGGATCGGGTATGATGA+CGG | - | chr1.2:8518892-8518911 | MS.gene060905:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | chr1.2:8518641-8518660 | None:intergenic | 45.0% | |
| CCCTTGGAAAGGATAAGGAT+TGG | - | chr1.2:8518980-8518999 | MS.gene060905:CDS | 45.0% | |
| CGAACCTTAGTCGTTATCGA+AGG | + | chr1.2:8518919-8518938 | None:intergenic | 45.0% | |
| CTCCACTCATGGATCAAATC+GGG | - | chr1.2:8518649-8518668 | MS.gene060905:CDS | 45.0% | |
| GAAATAGCCTTTCAAGCCCA+AGG | + | chr1.2:8518953-8518972 | None:intergenic | 45.0% | |
| GATCCAAATGTCAACGGGAT+GGG | - | chr1.2:8518733-8518752 | MS.gene060905:CDS | 45.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | chr1.2:8518025-8518044 | None:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | chr1.2:8518560-8518579 | MS.gene060905:CDS | 45.0% | |
| TATGCGGGTACTACTTGGAT+CGG | - | chr1.2:8518880-8518899 | MS.gene060905:CDS | 45.0% | |
| ! | ACTTATTGATAGCTTGGGCC+GGG | + | chr1.2:8518516-8518535 | None:intergenic | 45.0% |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | chr1.2:8518638-8518657 | MS.gene060905:CDS | 45.0% |
| ! | TTTCTTTTGGGCCCTTGGAA+AGG | - | chr1.2:8518969-8518988 | MS.gene060905:CDS | 45.0% |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | chr1.2:8518696-8518715 | MS.gene060905:CDS | 45.0% |
| !! | AATAAAAATACATTTATATT+TGG | + | chr1.2:8519069-8519088 | None:intergenic | 5.0% |
| AAATGTCAACGGGATGGGAG+CGG | - | chr1.2:8518738-8518757 | MS.gene060905:CDS | 50.0% | |
| AGATCAGCATATTGGCCAGC+AGG | - | chr1.2:8518007-8518026 | MS.gene060905:intron | 50.0% | |
| ATGCGGGTACTACTTGGATC+GGG | - | chr1.2:8518881-8518900 | MS.gene060905:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | chr1.2:8518893-8518912 | MS.gene060905:CDS | 50.0% | |
| GCTAAGTCCTTGGGCTTGAA+AGG | - | chr1.2:8518943-8518962 | MS.gene060905:CDS | 50.0% | |
| GGATCCAAATGTCAACGGGA+TGG | - | chr1.2:8518732-8518751 | MS.gene060905:CDS | 50.0% | |
| GGGTGTTCGACCTGAAAAGT+TGG | - | chr1.2:8518669-8518688 | MS.gene060905:CDS | 50.0% | |
| TTGGGCCCTTGGAAAGGATA+AGG | - | chr1.2:8518975-8518994 | MS.gene060905:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | chr1.2:8518654-8518673 | None:intergenic | 50.0% |
| ! | GGCTTTATATGGACGGGCAT+GGG | - | chr1.2:8518702-8518721 | MS.gene060905:CDS | 50.0% |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | chr1.2:8518934-8518953 | MS.gene060905:CDS | 50.0% |
| !! | TGGCTTTATATGGACGGGCA+TGG | - | chr1.2:8518701-8518720 | MS.gene060905:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | chr1.2:8518964-8518983 | MS.gene060905:CDS | 50.0% |
| CGGGCCTTCGATAACGACTA+AGG | - | chr1.2:8518912-8518931 | MS.gene060905:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | chr1.2:8518775-8518794 | None:intergenic | 55.0% | |
| GCTCCCATCCCGTTGACATT+TGG | + | chr1.2:8518739-8518758 | None:intergenic | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | chr1.2:8518933-8518952 | MS.gene060905:CDS | 55.0% |
| ! | GTGTTTTCACCGGTGGGGAA+CGG | + | chr1.2:8518180-8518199 | None:intergenic | 55.0% |
| ACATGGGCCGAGATCGTACC+CGG | - | chr1.2:8518495-8518514 | MS.gene060905:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | chr1.2:8518769-8518788 | MS.gene060905:CDS | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | chr1.2:8518765-8518784 | MS.gene060905:CDS | 60.0% | |
| ! | TTTTCACCGGTGGGGAACGG+TGG | + | chr1.2:8518177-8518196 | None:intergenic | 60.0% |
| GCTTGGGCCGGGTACGATCT+CGG | + | chr1.2:8518505-8518524 | None:intergenic | 65.0% | |
| TGGACGGGCATGGGAGCTGA+AGG | - | chr1.2:8518711-8518730 | MS.gene060905:CDS | 65.0% | |
| TGTCAACGGGATGGGAGCGG+AGG | - | chr1.2:8518741-8518760 | MS.gene060905:CDS | 65.0% | |
| ACTCCGCCACCGTTCCCCAC+CGG | - | chr1.2:8518168-8518187 | MS.gene060905:intron | 70.0% | |
| CAACGGGATGGGAGCGGAGG+CGG | - | chr1.2:8518744-8518763 | MS.gene060905:CDS | 70.0% | |
| TCACCGGTGGGGAACGGTGG+CGG | + | chr1.2:8518174-8518193 | None:intergenic | 70.0% | |
| GGGATGGGAGCGGAGGCGGT+GGG | - | chr1.2:8518748-8518767 | MS.gene060905:CDS | 75.0% | |
| ! | CGGGATGGGAGCGGAGGCGG+TGG | - | chr1.2:8518747-8518766 | MS.gene060905:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8517887 | 8519309 | 8517887 | ID=MS.gene060905 |
| chr1.2 | mRNA | 8517887 | 8519309 | 8517887 | ID=MS.gene060905.t1;Parent=MS.gene060905 |
| chr1.2 | exon | 8518178 | 8519309 | 8518178 | ID=MS.gene060905.t1.exon1;Parent=MS.gene060905.t1 |
| chr1.2 | CDS | 8518178 | 8519309 | 8518178 | ID=cds.MS.gene060905.t1;Parent=MS.gene060905.t1 |
| chr1.2 | exon | 8517887 | 8517909 | 8517887 | ID=MS.gene060905.t1.exon2;Parent=MS.gene060905.t1 |
| chr1.2 | CDS | 8517887 | 8517909 | 8517887 | ID=cds.MS.gene060905.t1;Parent=MS.gene060905.t1 |
| Gene Sequence |
| Protein sequence |
