AlfalfaGEDB | MS.gene32971

M. sativa cultivar XinJiangDaYe / MS.gene32971

KEGG: K14291
GO: -
PFAM: PF10258.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32971.t1	XP_003589035.2	86.7	264	31	3	1	262	1	262	5.10E-109	404.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32971.t1	G7IBA2	86.7	264	31	3	1	262	1	262	3.7e-109	404.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050277	MS.gene32971	0.805646	1.21E-49	-1.69E-46
MS.gene050303	MS.gene32971	0.811433	7.02E-51	-1.69E-46
MS.gene050330	MS.gene32971	-0.816176	6.33E-52	-1.69E-46
MS.gene050719	MS.gene32971	0.81271	3.70E-51	-1.69E-46
MS.gene050721	MS.gene32971	0.815843	7.51E-52	-1.69E-46
MS.gene050724	MS.gene32971	0.80754	4.81E-50	-1.69E-46
MS.gene051633	MS.gene32971	0.813087	3.06E-51	-1.69E-46
MS.gene052309	MS.gene32971	-0.80248	5.50E-49	-1.69E-46
MS.gene053054	MS.gene32971	-0.808845	2.53E-50	-1.69E-46
MS.gene057079	MS.gene32971	0.812554	4.00E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32971.t1	MTR_1g016630	88.258	264	27	3	1	262	1	262	1.81e-151	423

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32971.t1	AT3G20430	49.254	268	120	7	1	260	1	260	3.67e-69	214

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Find 46 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTGTCGCCGCCACAC+AGG	0.597293	1.1:+5615999	MS.gene32971:CDS
AAGAAACCTGTCAATGTTGA+TGG	0.484273	1.1:-5616142	None:intergenic
AAGAGAAAGAGAAAGGCTTT+AGG	0.415930	1.1:+5616105	MS.gene32971:CDS
AAGTAGGATTGTCAGAAACA+TGG	0.643430	1.1:-5620382	None:intergenic
AATGAGATTATGATCCTGTG+TGG	0.779299	1.1:-5616013	None:intergenic
AGAAACCTGTCAATGTTGAT+GGG	0.647666	1.1:-5616141	None:intergenic
AGAAAGAGAAAGGCTTTAGG+AGG	0.581783	1.1:+5616108	MS.gene32971:CDS
AGAAGAAGACGATGTTGAGA+TGG	0.597325	1.1:+5615924	MS.gene32971:CDS
AGAGGAGGATTCTTCTCAAG+AGG	0.611513	1.1:+5620328	MS.gene32971:CDS
AGATCATCATCGTAGGAAAC+AGG	0.444720	1.1:-5620485	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAACTGAACTTGTCTT+TGG	+	chr1.1:5619293-5619312	MS.gene32971:intron	30.0%
AAAACCCAACAACATTTGTA+AGG	-	chr1.1:5617447-5617466	None:intergenic	30.0%
AAACAACTGAACTTGTCTTT+GGG	+	chr1.1:5619294-5619313	MS.gene32971:intron	30.0%
AACACATCAGAAACTGTAAA+TGG	-	chr1.1:5618566-5618585	None:intergenic	30.0%
AAGAATGTGAGACCAATTAT+GGG	+	chr1.1:5618088-5618107	MS.gene32971:intron	30.0%
AAGCATCTGTTGAAATGATA+AGG	-	chr1.1:5618260-5618279	None:intergenic	30.0%
AATAATAAGGACTTGGGAAA+AGG	-	chr1.1:5617744-5617763	None:intergenic	30.0%
AGATGAAAATCAACATTGCA+AGG	-	chr1.1:5616565-5616584	None:intergenic	30.0%
AGCAAGTACAAAATTCCTAA+AGG	-	chr1.1:5619059-5619078	None:intergenic	30.0%
AGTAGTAAAGGAACAATTGA+TGG	+	chr1.1:5618903-5618922	MS.gene32971:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	5615883	5620547	5615883	ID=MS.gene32971
chr1.1	mRNA	5615883	5620547	5615883	ID=MS.gene32971.t1;Parent=MS.gene32971
chr1.1	exon	5615883	5616157	5615883	ID=MS.gene32971.t1.exon1;Parent=MS.gene32971.t1
chr1.1	CDS	5615883	5616157	5615883	ID=cds.MS.gene32971.t1;Parent=MS.gene32971.t1
chr1.1	exon	5616437	5616542	5616437	ID=MS.gene32971.t1.exon2;Parent=MS.gene32971.t1
chr1.1	CDS	5616437	5616542	5616437	ID=cds.MS.gene32971.t1;Parent=MS.gene32971.t1
chr1.1	exon	5619398	5619541	5619398	ID=MS.gene32971.t1.exon3;Parent=MS.gene32971.t1
chr1.1	CDS	5619398	5619541	5619398	ID=cds.MS.gene32971.t1;Parent=MS.gene32971.t1
chr1.1	exon	5620284	5620547	5620284	ID=MS.gene32971.t1.exon4;Parent=MS.gene32971.t1
chr1.1	CDS	5620284	5620547	5620284	ID=cds.MS.gene32971.t1;Parent=MS.gene32971.t1

Gene Sequence

>MS.gene32971

ATGGAGGGTGGTGAGAACATTCTAGATGCCATTAACTACGAAGAAGAAGACGATGTTGAGATGGTTGATGTTGAAGAGGGTGAATTGGTTGAAGAAGAAGAACAAGACCATAATCGAAACGGTGTCGCCGCCACACAGGATCATAATCTCATTCATGAATCAGATAGTAAGAATATTAATCAAAAACCAAAACCTCTCAGTAAAAATCGGAAGCGTAAAAACAAGAGAAAGAGAAAGGCTTTAGGAGGATCGGATGCACCCATCAACATTGACAGGTTTCTTCACTCTTCCCAATTTCAAACCCTAATAATGCTGAATGTGTTATGCTGGTTGTGTTTTACTGGTTTAAGCGTTTGAATTGACTTATTTGAGCTTAAACTGTTTGAGAGAACTTATGAAAACAACTTATTACATGTTCATAAGCTGTTTTCAGCTTATTTTCAGGGCTTTGAATTTCCTTGTTCCATTACATTTAATCATTACTCTCTGATTTTTCCGTTTTGACATAAGTAAATACATGAACGAAATTCTAATGAATTATGTGCTTTTTTCAGGTTTGTGATAGAGACATGTCGGCGTCTGAAAGAGAAAAAATCATACATGGTATATACAGCTGTAGGTTGCCTTGGGATTTCTGCGTTGAGCGATATCGTCAAAGAGGTATTGGAACCTTGTACTTCCTTGCAATGTTGATTTTCATCTTGAATGCATGGTCTAAATTCGTGTAGGATAGGGTTGCTTTACGATTGTCCAAACTGCGGCTGCAATTGCAATTGCAGTTGTCGACCACAATTTGAAACAACTTTGTATGAAATACATAGCCATTTAGAATGTCTGAAAACAATTTATAAACAACCTAAACTGTTTTATCAAATGAAAAGGAACCAGATATCTTAATAATTGAAGAAGTTATCTACTCTAATTGTCTACATCCCAGTCCTCTTGATTTTGCTTCGTCAAAAATTGCCCAAGTAATGCTCTGACATTCAAATGTGCGAGTTTCCATTACGTATGCATCCTGTTTTACTTGTAGGTTCTCCTTTTTACACTGGTTTGATAATTCTGAATCCTCGGTGTTCTTTTGATTGTGTATTGCTAAGAACTATTGATATTTGGGGGTGAGTTTGAGGTATGCACAGCTGATTTCATAATTCTTGTCATATTTCCAATACATGTCTATTCTCCTAATACTGATTTTGTAATTCTGAATTCTTCTTATTTCTATCGAGGCTTCTATCGATAAGAATGATACGTATTTGGTGGTGTAAGTTTGAAGTATACGCAGCTGATTTCATAATTCCTGTCTTACTTCCGAATACTTGCATGTGCTCCTTCTTAACTGATTTCATAATCATGAGTCCTTTGTGTTCTTTTACTTGTATGGAGGCTTTTATTGCTAAGAATGATCAATATTTTGTGGTGCAAGTTTGTGGTGTTTGCCTTGTGTATGGTGGTTCTCTGCATCATGCACAGTAGCTAGAATTATATCTTTATTTTCTAATGTGACTTTTAGTAGCCACTTCAACCTCTCTTGAGGTGGTTTCCTCAACCTTGGTTCCAACCTTACAAATGTTGTTGGGTTTTTTCATAGATGGTTCTGTGAATACTGTTAAAATATATGAAAAATATTTGACATTATCTTAACTATATCATAGAGTATTTGAATTATATTTTGGGTTTGGCTTCCATATTTCCTTATATTTCATGATTTATTTAATAGGAATGTGAGTCTAATCTAGTACGAGTATAAATAAGGGATGGTGTCTGCTCTTTTGTGACACATCATATCACATCATATTGTAGTATGTTTCACAGTATTATCAATATAATTATTCGGAGTTTTGTTCTGTCCTTTCCTCCTTTTCCCAAGTCCTTATTATTTCAATAAGATATCAATGTTACCTTCCTTTGTGACTTGTCCTGCTACTAGTACTGAACAGAATCCAAATTCGCAAGGAAACATTTCATATCATAAGAAATAATTTGATATTTTAAATTACTCAAAAGATATAATCAATATATTTTTCATAATTCTAACAATTCTCGTCAAGCTGTAAAGCTTTCTGAACTTTAAGTACACTGTAAAAAAATCTAAGGAAAAAAACAATATGGGCTCCACAAAACGTGAGTGCAAAGACAGATGAGGCATACTAAAGAAGCATTGTTGGAAATCCATTATACAGCACTCACTTTACTTCAATGGTTAAGAATGTGAGACCAATTATGGGACAACGATGAAATATTCCAAACAAAAAAGTTCAAAACAAAATCATCCCAAATTTTAGAGTAAAGTATTGTGAAACATCAATATAACAGATGCTTCACATCAATATAATTACTCAGTTTGTTTAATCCTTTCCTTCTGCGCCTAAAGCCTTATCATTTCAACAGATGCTTTGCGGACTTTCTAATCTTGGCTTGTCACTGGCTCTCTAACCTCTCTCTTCATCTCCCAGTAAAATGTGCGTTGCATTGTTTTTAAATAAATTGTTCTTTTTGTGATTTTCCTTTTAATAATTTCCCTTTATTGATGGGAATGTGGCATTGTTTGAGGAAGACATAATTTACTCACCTTTTCACCTCTTCTTAGAAAAGGTTAGAGTTCAGATTCTACCTGATTTGGTTCAGCCTTGACCTGATTATGCTTATCTATTACTCCCTAGAAGACCATACAATACAACCATTTACAGTTTCTGATGTGTTGAATTTTGTACCCAACCTTGCAGATTTTAACCAGAAACTAGTTTGCTCCTTCCAATTCTCTGTTTAAACTTTGATGTTCCTGGCTGATAAACACCTTCATTATTTAATTTTATACACATGTTTATCCACTTTATTTTTCTCTCATATAAACAGAGCGGCCAACAAAGTAAGCCAAAATTGAATTTTCCTAAATATATCATATTTTTATTTTGATTACCATCTGAATTTCATTACAGTTATAGAAGGTCCTTTGTTTTATAAGAATTTAACATTTTAATTTTTTCTGGTTTCTAATGAAAGTATATTGTTGAGTAGGTAGTAGTAAAGGAACAATTGATGGCGCTAGGTTAAGATTTTAGTGTAAACATGGTAGTAGACAGCCCTAATATATGTAGGAGAATCAAACTGAAGGTTTTTGGTTGAAATCTAAAATATTGTTGGACGAGGGATAACCTAATATTGTAAGCCACCCTTTAGGAATTTTGTACTTGCTGATCAAGCAGTAAGGACTTTGTTGGTTGAAAATCTAAAACATTTGTCCAATGAACGTATTAGGTATTAGTTCTCTATTTCTACTTAATTCCATTTTTTGTTATGAATTTTGGATTATTTTTCTTCTATGCCACATTATACTCTTCATAAATCATGGTGGATAATTTTCATTGTTTCTAGATTATACTACTATTATTATTATTGTCTTGATTCTCAAAACAACTGAACTTGTCTTTGGGTTTAATTATGTTTGGTGTTCTTTTTAAAGCTGTCCGATTTGGCACGTCACAAATTTGTATAATTAAGTGTTAAACTCACAGGTAGACACAATACAGTCCTGTGGAGGCCAGCAGACTGCTGATGGTAAGCGATTTCGGACAGGGGGTGGTGTATTGTGGAACATCATCAAAGTTCGAGAACCAAATGCTTACAAAGAGATAATGAAAAAAGCAAGAGAGTTTGAGGTGTGTGATTGATCCTTACTTTTTACTGCTTAAACACTTTCTTTTTACATTTATGTTCCATTGAGTGCATCGACGGCACAGTAGACTAAGTGTGTGTTTGGGTGAATGTGTACAAACTTGAATTTTTCAAAATTGATTGTTAATAAGTGAGTGTGAAGTGAAGTGATTTCTGTTTGGTAACTTTTATCTTAAAAGCAAGTTTGAAGTAAAGCCTAGTAAAAATTATCAATCCAACTCAATGCAAAAGTCCTTTTTTTTTTCACTTTACTCTAATGGGTTTTAAGGACTAAAAGCAACTTTACTTGGCAACACCCTAACATAAAAAAAAAACTGGACAAAATATAGCTGGTGATTTCTAACCTATGTTTTCTACAACTGTGAGTTTAAGCATACAACAGTCTTTTGGCAGCAATTCCACATATTAGACCGAGGCAGATGAACATAAAACTAATACCAGAAAAATGGAAATTGTTCATGACTTTTGAATTAGCAGGCAAAAAGTTCCGGGAAGATTTTTTGTTTGATATTAACGTTTTTTTAACCAAGACTGCTGTTTAGATGGTTCCGGGCTGCCTTTTTCGTAAAAGATAGTAGCTGCAGCTTTTGACTTGTTAGTTCTTCCCAGTTGCTCTTATATATAGTCATTGATTAATAATCAACCAAAAGGTCATTCAAATATTATTTGCATCGTAATCATTAGTTTATCTTGTGATTGCTCATGGTCTTCTTTATAATAATACAGAAGCAATTCAGGCAGCCAAGTTTTAAGCAGCCATCCATGCAAAAAGAGGAGGATTCTTCTCAAGAGGTGCCTTGTACATTTTCTAGTGCGCATCAGGGCCATGTTTCTGACAATCCTACTTGCGCATTGCAAATGCAAGATCAAGATAAACCACTAGGCCCTGAAAAGAAACGTGTTCCTGTTCATGACAGATTGAGAATACCTGTTTCCTACGATGATGATCTGCTTGGAGCAAGCGTTGATAATGATGTAACCTTGCCTTGA

Protein sequence

>MS.gene32971.t1

MEGGENILDAINYEEEDDVEMVDVEEGELVEEEEQDHNRNGVAATQDHNLIHESDSKNINQKPKPLSKNRKRKNKRKRKALGGSDAPINIDRFVIETCRRLKEKKSYMVYTAVGCLGISALSDIVKEVDTIQSCGGQQTADGKRFRTGGGVLWNIIKVREPNAYKEIMKKAREFEKQFRQPSFKQPSMQKEEDSSQEVPCTFSSAHQGHVSDNPTCALQMQDQDKPLGPEKKRVPVHDRLRIPVSYDDDLLGASVDNDVTLP