AlfalfaGEDB | MS.gene33076

M. sativa cultivar XinJiangDaYe / MS.gene33076

KEGG: K05928
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0008168 GO:0016740 GO:0016741 GO:0032259
PFAM: PF08241.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33076.t1	XP_024631069.1	95.5	356	13	3	1	355	2	355	3.30E-167	597.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33076.t1	Q6ZIK0	74.1	290	74	1	64	353	74	362	1.7e-127	457.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33076.t1	B7FHY7	95.5	356	13	3	1	355	2	355	2.3e-167	597.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049757	MS.gene33076	0.821481	3.95E-53	-1.69E-46
MS.gene050553	MS.gene33076	0.844313	8.17E-59	-1.69E-46
MS.gene05080	MS.gene33076	0.806486	8.04E-50	-1.69E-46
MS.gene051521	MS.gene33076	0.839075	1.97E-57	-1.69E-46
MS.gene051838	MS.gene33076	0.807143	5.84E-50	-1.69E-46
MS.gene051874	MS.gene33076	0.800856	1.18E-48	-1.69E-46
MS.gene052469	MS.gene33076	0.817624	2.99E-52	-1.69E-46
MS.gene05494	MS.gene33076	0.820323	7.29E-53	-1.69E-46
MS.gene055741	MS.gene33076	0.829294	5.58E-55	-1.69E-46
MS.gene055744	MS.gene33076	0.825204	5.33E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33076.t1	MTR_1g014690	94.663	356	16	3	1	355	2	355	0.0	625
MS.gene33076.t1	MTR_1g014690	78.371	356	19	5	1	355	2	300	2.42e-168	471
MS.gene33076.t1	MTR_4g036005	70.199	151	42	3	67	216	16	164	1.26e-70	223
MS.gene33076.t1	MTR_3g032530	27.778	198	131	3	57	253	34	220	2.62e-18	85.1
MS.gene33076.t1	MTR_3g032530	27.807	187	123	3	68	253	2	177	7.73e-18	83.2
MS.gene33076.t1	MTR_3g114780	26.230	244	161	6	57	297	63	290	2.33e-16	79.7
MS.gene33076.t1	MTR_6g069600	34.906	106	67	1	130	235	290	393	4.38e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33076.t1	AT1G64970	73.958	288	73	1	64	349	60	347	9.17e-160	451
MS.gene33076.t1	AT3G18000	37.391	115	70	1	130	244	284	396	3.17e-17	83.2
MS.gene33076.t1	AT1G73600	36.607	112	69	1	130	241	283	392	4.48e-17	82.8
MS.gene33076.t1	AT1G73600	36.607	112	69	1	130	241	297	406	4.90e-17	82.4
MS.gene33076.t1	AT1G48600	36.522	115	71	1	130	244	284	396	1.31e-16	81.3
MS.gene33076.t1	AT1G48600	36.522	115	71	1	130	244	268	380	1.34e-16	81.3
MS.gene33076.t1	AT5G13710	27.473	182	121	2	57	238	34	204	1.37e-16	80.1
MS.gene33076.t1	AT5G13710	27.473	182	121	2	57	238	34	204	1.37e-16	80.1
MS.gene33076.t1	AT1G20330	24.679	312	204	8	57	353	63	358	5.89e-16	78.6
MS.gene33076.t1	AT1G76090	24.839	310	204	9	57	352	63	357	8.46e-16	78.2

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Find 93 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGGGCAAGTTGTGT+AGG	0.545845	1.1:-6952021	MS.gene33076:CDS
AATAGTAACATGGTGTCATA+GGG	0.525266	1.1:-6951261	MS.gene33076:CDS
AATGCTCTGGCTGCTGCTCA+AGG	0.516953	1.1:-6951964	MS.gene33076:CDS
AATGCTGAACGTATCACTGC+TGG	0.591367	1.1:+6950700	None:intergenic
ACAACTTGCCCCAAATTTCT+TGG	0.230657	1.1:+6952026	None:intergenic
ACACCATGTTACTATTATTA+TGG	0.233170	1.1:+6951268	None:intergenic
ACGGCCAGTTTGATCTAGTG+TGG	0.645283	1.1:-6951499	MS.gene33076:CDS
ACGTTCAGCATTAACATGGA+AGG	0.559901	1.1:-6950689	MS.gene33076:CDS
ACTAGATCAAACTGGCCGTC+AGG	0.424197	1.1:+6951503	None:intergenic
ACTATTATTATGGTGCCACC+CGG	0.564921	1.1:+6951278	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATTAGAAAGGATTTAG+AGG	-	chr1.1:6952056-6952075	MS.gene33076:CDS	30.0%
AACCTATGAGTTAAATTGTC+AGG	-	chr1.1:6950973-6950992	MS.gene33076:intron	30.0%
AACCTGACAATTTAACTCAT+AGG	+	chr1.1:6950978-6950997	None:intergenic	30.0%
AGCTGAAAGGAAAGTTATAT+CGG	-	chr1.1:6951716-6951735	MS.gene33076:intron	30.0%
ATACAAGTTCTTAATACCCT+TGG	+	chr1.1:6952742-6952761	None:intergenic	30.0%
ATACATGCATCAATAACAAC+AGG	+	chr1.1:6952443-6952462	None:intergenic	30.0%
ATGAGTTAAATTGTCAGGTT+TGG	-	chr1.1:6950978-6950997	MS.gene33076:intron	30.0%
CATTAGAGAAACCATTAGAA+AGG	-	chr1.1:6952047-6952066	MS.gene33076:CDS	30.0%
CCAGTATGCATTTATGATAA+TGG	-	chr1.1:6954259-6954278	MS.gene33076:CDS	30.0%
CCATTATCATAAATGCATAC+TGG	+	chr1.1:6954262-6954281	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	6949990	6954599	6949990	ID=MS.gene33076
chr1.1	mRNA	6949990	6954599	6949990	ID=MS.gene33076.t1;Parent=MS.gene33076
chr1.1	exon	6954233	6954599	6954233	ID=MS.gene33076.t1.exon1;Parent=MS.gene33076.t1
chr1.1	CDS	6954233	6954599	6954233	ID=cds.MS.gene33076.t1;Parent=MS.gene33076.t1
chr1.1	exon	6951951	6952120	6951951	ID=MS.gene33076.t1.exon2;Parent=MS.gene33076.t1
chr1.1	CDS	6951951	6952120	6951951	ID=cds.MS.gene33076.t1;Parent=MS.gene33076.t1
chr1.1	exon	6951460	6951564	6951460	ID=MS.gene33076.t1.exon3;Parent=MS.gene33076.t1
chr1.1	CDS	6951460	6951564	6951460	ID=cds.MS.gene33076.t1;Parent=MS.gene33076.t1
chr1.1	exon	6951127	6951330	6951127	ID=MS.gene33076.t1.exon4;Parent=MS.gene33076.t1
chr1.1	CDS	6951127	6951330	6951127	ID=cds.MS.gene33076.t1;Parent=MS.gene33076.t1
chr1.1	exon	6950665	6950767	6950665	ID=MS.gene33076.t1.exon5;Parent=MS.gene33076.t1
chr1.1	CDS	6950665	6950767	6950665	ID=cds.MS.gene33076.t1;Parent=MS.gene33076.t1
chr1.1	exon	6949990	6950108	6949990	ID=MS.gene33076.t1.exon6;Parent=MS.gene33076.t1
chr1.1	CDS	6949990	6950108	6949990	ID=cds.MS.gene33076.t1;Parent=MS.gene33076.t1

Gene Sequence

>MS.gene33076

ATGGTGACGACAGCGAGAATCTCTTCTTCATTATTACACTGCACGCACACATTTCCTCAGCACCACAGAGATACCATCATTACTACTACTGTACCATTCAGCAGTAGAAGAAGAAAAGGGTCATTGCGTCTATCAATGGCGGCGGTGAAAGAAGCGATGGTGGTAATGGAAGAAGAAGAGAAGAAGAAACTTCAGTTGGGTATTGCTGAGTTTTATGATGAGTCTTCTGGTATATGGGAGAATATTTGGGGTGATCATATGCATCATGGTTTTTATGATCCTGATTCTACTGTTTCTGTTTCTGATCATCGTGCTGCTCAGATCCGTATGATTCAAAACTCTTTGACTTTTGCTTCTCTTTCGACTGGTATTCTTTCTTTTTCACTTCTCTTCTCACTGCTCACTTTGTACTTGTATTATCTTATCTTATCTTATCACTTTCTAATGCATTAAATGTAAATAGTATACTTTGTTTTGCTCCGTTTTGAATTTGACTATGTCCAAATCAAGTTCACTACGGTTGGACTCAAGTGGTTAATGAGTTCCACCAGTAATGGATTGTTCAGATAGACTTGAGTTCGATTGGTGAAACAATTCTTGGCCAGACTTTTCTTACTGTCTAGCCGAACTCTGGATTAGCAGAACCCATTATCGAAGGGTTAACGCAAAAAAAACAAAAAAAAACAAAAAAAGAGAGCATATATGTAGGGCCTGATTTGATTGAATTATTTGAGCTAATCTAGCGACATGAACACTTGTGTGATTCTTTCAGAACTTATTTCCATAAGTTTTCAAAGATAGTTTATAAAAACAAATTTAACTTTATTTTATTATTTTGTTATAGAAAAAGCTTATACATTAGTGTTTATAATGATAGGTTTTTATGCTATAAGTTGAAAATTAAGATGTATATCCAAACAGGGCCTTAGATGAAAAAATGAAGATTTTCAATCATTAATTTATCACGTTTGGGGAACAAACAAAACCTATGAGTTAAATTGTCAGGTTTGGTAGTTGAATGTGTGAGTCTTTGTTACTATAGTCGCCAAATGTATCAAAATTACGATAAACATATATAAACATGTATTTTGTTACTGAGTTTTGTCTTGTATGTGTCTTTCTTTGGTTAGTTTTGTTATCGGATGTGTCTTTCATTAATCAATTTGGTCCATGAAATTACTAACATAAGACACGCTTAGAGATGTTTTTACAATTTTGATATATTTATAGACTAGAGTGACAACACCTTACACATTTAAAGACCAAAAAAACCTATGAAGCAGAGAGACTAACATTAGATATGAGACTTAACACCCAGAGTTAAATATGTTTATTGGAGTAAATTGTCATTTTGGTAATTGAATGCGTGAGTCGCTGTCATTATAGTCTCGGAATGCATCAAAATTACAAACCAAAGGCACACTCGAAGACTCACTTAGAGATGTTTTTATAATTTCGATACATTTAGAGACTATAGTGACATTTCCTCACCCATTTAGGGACTAAAATGATTATTCAAAGCTATGAAGCAGAGACATGGACATTTCCCACGACGAGGTGAAAGTTGGAGATCATATCATACCCCAAGTTACACGGTTTAAATATCTTGGGCCCATAGTACAAAATGACGGAGAAATAGAAGCAGATGTAAATCATCGTATTCAAGCTGGGTGGTTGAAATGGAGAAGAGCCTCAGGTGTTTTGTGCGATAAGAAAGTACCACTTAAGCTGAAAGGAAAGTTATATCGGACAGCAGTCAGATCGGCAATGTTGTATGGTACGGAGTGCTGGGCGGTTAAGAGCCAACACGAGAGGAAAGTAAGTGTAGCGGAGATGAGGATGTTGTGCTGGATGAGTGATAAGACTAGATAGGATAGGATTAGGAATGACACCATTAGAGAAAGAGTGGGGGTAGCACCTATAGTAGAAAAGTTGGTGGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGACCTGTAGATGCCGTTGTTAGAAGAGTAGATCAAATAGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACCATTAGAGAAACCATTAGAAAGGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTTTTTGGCGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTCTTGTTGTTGTTATTGTATTGACACATAGACAACGATAATACTTTGAAAAAATGTAAGTGATTGAATATAACCACATAGGTTGATGTCGTGTAACACCAACTACATCTTCAATCTGATGTCTTGGTGCTACATAGAAAAAAGGTTTTAGTTACTGTATTATTACTCAAAAACAATGTCTGTGTGTAATTTCAGATGTTATTAACAGCAGTAATTTTTTTTTTTTTTTTTTCATTTTTTGCTGGTAAATTTTATTTTGGTTGGACTGGCTAGTACTGACTACCTGTTGTTATTGATGCATGTATGCTCAGATGATCCATCAAAATGGCCAAAGAGTGTAGTTGATGTTGGGTGTGGCATAGGGGGAAGTTCAAGGTACCTGGCCAAGAAATTTGGGGCAAGTTGTGTAGGCATCACTCTCAGCCCTGTTCAAGCTGAAAGAGCTAATGCTCTGGCTGCTGCTCAAGGATTAGCTGATAAGGTCTTTCTTTCTGTGCATTTTCTCCTTTATCATCTATTTTTTTACACATTTTACTACTTGATACTCAATGTGTTGAGTAATATTATTATAATGAATCTCACCAAGGGTATTAAGAACTTGTATAGAATAGAATCTACTCATATGTGGCCTATGCAGCACTGACACTTCCGATTGAAAACACGTATCATATTCAACATGTGTCTGACTGCAACGTGATACTGGCACATGTGATTATATTCAATCACTTTCATTATTTAAAATTATTATTGGTGTCTATGTATCAATGTCAGTATCGTGTTTGGTGTTTGTGTCTTTATGTCGGTGCTTCATCGCGTGGCTGATTTAATATTTACCTTTACTGTTTATGCAATGCAATGCAATTGTAGGTGTCCTTTCAAGTTGCTGACGCTCTAGAACAACCATTCCCTGACGGCCAGTTTGATCTAGTGTGGTCAATGGAGAGCGGAGAGCATATGCCTAACAAACCAAAGGTCCTAATTTCTTTTGCCGTCTCACTTGCATACTGCACTTCACTTTCTTTGATATTTTCTGTTCTTTATGCCAGTAAAGTTGTAATCAATCTCATTTCAGTTTCCTATTTCATACAAAAATTGTTTCAGTTTGTTGGTGAGTTAGCACGGGTAGCAGCACCGGGTGGCACCATAATAATAGTAACATGGTGTCATAGGGATCTTGCCCCGAATGAAGAATCCCTACAACAATGGGAGAAGGATCTCTTGAAGAAGATATGTGATTCATTTTATCTTCCAGAGTGGTGCTCAACTGCTGATTATGTCAAATTACTTGAAACCATGTCCCTTCAGGTAGTTAATTAATATACGTAATTGTAAAATTTTCATTCTCTACTGTGAGTTGAGAAATATTAAAGAGTTTATTTGAGTCTACATGAACAGTGAACACTTATATTAGTATTTGGATACACTTGTTATTAACTATTAGTTTTTTGAACAATTTCTTATATTGGTTGAAAATAGTTTTTTACATCTCAATTTTTCACAAGATACTGTAACCGTAAACTTATTGATATGGAAAAACTTAAGGAAGTTAGAAGCCAATTCAAATGAGATAGTTGCATATCATAATTTATTGAATAAGCACTTAAACAATCACTATGTGCTATCAAGTTAGGTTGTATTGACATGTTTGATTGCTATCTATCTAGGACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGTTCAGCATTAACATGGAAGGGTTTCACCTCAATCTTGCGAAGTGGTAAGCTCAACTTTTTATATTGCATTTACAAACAACTCCCTTGTCTCAAATCACTAGTCTTATTAAATACTCTCCGTCCTATATTGAGTGTCACGTTAGCAAAAGGAAAAGTCTCAAAATAAGTGTTGCTTTACATTTTTTTTCCTAAACAACAAATGCTGGTATTGTTAGTATTTTGTTGAGGGTGGAGATCGGACCCTCAATCTCCTTATCATTCCTCTCCTAAACTCCCCCACCCAACTACCAAGCCAACCTTATATATCCGTGTTGCATTACATGTTTGGTGTAACATTTGTTTTATTTTAGTTCTCTTCCCAAATTAATGTTATATACTCCAGTATGCATTTATGATAATGGCCAACAGTTGATGGTTTATATGAATACTTTTGTAAAATTGTTACACTCTTTCATTTATGTATACCTTTTCTGAATATGTGTGAAATAATCTAACTAAAGTGACGCTCGATATGTGACCAAAGGAGTACATAAATTGATAATGATCTTGTTGGATGAAATGACTTAATTAGAATTATGTCATTTTTGTTATTGTGTGCAGGTCTAAAAACTATAAAAGGAGCTTTAGCTATGCCATTGATGATAGAAGGATTCAGGAAGGGTGTGATTAAGTTTGCCATTATCACATGTCGAAAGCCTGAAAACGCAGAGGGTCAATGA

Protein sequence

>MS.gene33076.t1

MVTTARISSSLLHCTHTFPQHHRDTIITTTVPFSSRRRKGSLRLSMAAVKEAMVVMEEEEKKKLQLGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQNSLTFASLSTDDPSKWPKSVVDVGCGIGGSSRYLAKKFGASCVGITLSPVQAERANALAAAQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPNKPKFVGELARVAAPGGTIIIVTWCHRDLAPNEESLQQWEKDLLKKICDSFYLPEWCSTADYVKLLETMSLQDIKSADWSPFVAPFWPAVIRSALTWKGFTSILRSGLKTIKGALAMPLMIEGFRKGVIKFAIITCRKPENAEGQ