Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33102.t1 | XP_003588819.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 7.50E-96 | 359.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33102.t1 | Q6P011 | 33.9 | 180 | 103 | 4 | 5 | 175 | 15 | 187 | 1.2e-20 | 101.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33102.t1 | G7I7L8 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 5.4e-96 | 359.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene33102 | 0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene33102 | 0.829661 | 4.54E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene33102 | 0.813612 | 2.34E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene33102 | 0.804124 | 2.51E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene33102 | 0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene33102 | 0.812809 | 3.52E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene33102 | 0.819142 | 1.36E-52 | -1.69E-46 |
| MS.gene061160 | MS.gene33102 | 0.804448 | 2.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33102.t1 | MTR_1g013660 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 7.27e-130 | 361 |
| MS.gene33102.t1 | MTR_8g027900 | 100.000 | 51 | 0 | 0 | 61 | 111 | 156 | 206 | 1.58e-27 | 108 |
| MS.gene33102.t1 | MTR_8g027900 | 96.875 | 32 | 1 | 0 | 1 | 32 | 1 | 32 | 6.66e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33102.t1 | AT5G10780 | 81.768 | 181 | 29 | 2 | 1 | 178 | 1 | 180 | 3.38e-88 | 256 |
| MS.gene33102.t1 | AT5G10780 | 82.840 | 169 | 25 | 2 | 1 | 166 | 1 | 168 | 7.86e-82 | 240 |
Find 65 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATTCATCGCCCTTAATT+TGG | 0.174653 | 1.1:+7257374 | MS.gene33102:CDS |
| AACACTCTGTAAGGCACTTA+TGG | 0.194375 | 1.1:-7256434 | None:intergenic |
| ATCATTAACAAGTTCTTAAA+TGG | 0.219625 | 1.1:-7256334 | None:intergenic |
| GTAACATGCCTCCCAAATTA+AGG | 0.244098 | 1.1:-7257386 | None:intergenic |
| TGGATTCAGCATCTTTCTTT+TGG | 0.301710 | 1.1:-7255855 | None:intergenic |
| TCTTCTGCAGCTCAATTCAT+TGG | 0.332546 | 1.1:+7257784 | MS.gene33102:intron |
| GTATCACCTTCTCAGCTCTT+TGG | 0.334333 | 1.1:+7256407 | MS.gene33102:CDS |
| AAGGGTGTGATGGGATCTTC+TGG | 0.346236 | 1.1:+7255724 | MS.gene33102:CDS |
| GTATTCATCGCCCTTAATTT+GGG | 0.348550 | 1.1:+7257375 | MS.gene33102:CDS |
| GATGCTAAAGTGGAGCTTCT+TGG | 0.369452 | 1.1:+7257342 | MS.gene33102:CDS |
| ATTTAAGAACTTGTTAATGA+TGG | 0.394212 | 1.1:+7256336 | MS.gene33102:CDS |
| ATCGCGAGAAGTTGAATTAT+CGG | 0.394794 | 1.1:-7255770 | None:intergenic |
| GAGGGAAGCGCGTGAGAAAC+CGG | 0.398618 | 1.1:-7255806 | None:intergenic |
| AATTTGGGAGGCATGTTACT+AGG | 0.402445 | 1.1:+7257390 | MS.gene33102:CDS |
| GAGGCATGTTACTAGGTGTT+TGG | 0.405795 | 1.1:+7257397 | MS.gene33102:CDS |
| CGATTCAATTAAATGGATAA+AGG | 0.406344 | 1.1:+7255700 | None:intergenic |
| ATGCTAAAGTGGAGCTTCTT+GGG | 0.409851 | 1.1:+7257343 | MS.gene33102:CDS |
| TCCACTTTAGCATCTTTGTA+AGG | 0.413449 | 1.1:-7257333 | None:intergenic |
| CTTCTGCAGCTCAATTCATT+GGG | 0.415950 | 1.1:+7257785 | MS.gene33102:intron |
| ATTGTTGGAAACAGAAAGCT+TGG | 0.427332 | 1.1:+7256296 | MS.gene33102:intron |
| ACACTCTGTAAGGCACTTAT+GGG | 0.435288 | 1.1:-7256433 | None:intergenic |
| TTTAAGAACTTGTTAATGAT+GGG | 0.445845 | 1.1:+7256337 | MS.gene33102:CDS |
| AGAAAGATGCTGAATCCAAT+TGG | 0.446637 | 1.1:+7255860 | MS.gene33102:CDS |
| TAACATGCCTCCCAAATTAA+GGG | 0.464691 | 1.1:-7257385 | None:intergenic |
| GGGTTTATGATGTGGATGGC+TGG | 0.475763 | 1.1:+7256358 | MS.gene33102:CDS |
| TTCCTACCCACACATCAGAC+TGG | 0.494006 | 1.1:+7257813 | MS.gene33102:CDS |
| TGGGATCTTCTGGACGAAGA+TGG | 0.499581 | 1.1:+7255734 | MS.gene33102:CDS |
| TGAATCCAATTGGAAATCTC+AGG | 0.499594 | 1.1:+7255870 | MS.gene33102:CDS |
| AAAGAAAATCCAACCTGAGC+AGG | 0.500189 | 1.1:-7257851 | None:intergenic |
| CAGGAGGTGGAGTACTCAGG+TGG | 0.509179 | 1.1:+7258535 | MS.gene33102:intron |
| GTCATCCTTAGCACCTGCTC+AGG | 0.516236 | 1.1:+7257838 | MS.gene33102:CDS |
| GATAAAGGAAAGGGTGTGAT+GGG | 0.521901 | 1.1:+7255715 | MS.gene33102:CDS |
| CTTCAGGAGGTGGAGTACTC+AGG | 0.524189 | 1.1:+7258532 | MS.gene33102:intron |
| GAGGTGGAGTACTCAGGTGG+GGG | 0.524742 | 1.1:+7258538 | MS.gene33102:CDS |
| GGATAAAGGAAAGGGTGTGA+TGG | 0.525644 | 1.1:+7255714 | MS.gene33102:CDS |
| GGAGCTTCTTGGGCCTAAGT+TGG | 0.528352 | 1.1:+7257353 | MS.gene33102:CDS |
| CGCGATATTATCGATCCTCC+CGG | 0.529746 | 1.1:+7255787 | MS.gene33102:CDS |
| ACCTTACAAAGATGCTAAAG+TGG | 0.529869 | 1.1:+7257332 | MS.gene33102:CDS |
| GGGATCTTCTGGACGAAGAT+GGG | 0.531311 | 1.1:+7255735 | MS.gene33102:CDS |
| ACTGTTCACTTGTTTAGCAT+CGG | 0.532087 | 1.1:+7256385 | MS.gene33102:CDS |
| GCATACCTGAGATTTCCAAT+TGG | 0.533753 | 1.1:-7255875 | None:intergenic |
| AGGAGGTGGAGTACTCAGGT+GGG | 0.535718 | 1.1:+7258536 | MS.gene33102:intron |
| AATTAAATGGATAAAGGAAA+GGG | 0.536006 | 1.1:+7255706 | None:intergenic |
| CATGTTACTAGGTGTTTGGA+AGG | 0.537062 | 1.1:+7257401 | MS.gene33102:CDS |
| GAAAGCTTGGGAAGTTGCAC+AGG | 0.537408 | 1.1:+7256309 | MS.gene33102:intron |
| TCCAACCTGAGCAGGTGCTA+AGG | 0.537452 | 1.1:-7257843 | None:intergenic |
| GGAGGTGGAGTACTCAGGTG+GGG | 0.550312 | 1.1:+7258537 | MS.gene33102:intron |
| TCCTACCCACACATCAGACT+GGG | 0.552562 | 1.1:+7257814 | MS.gene33102:CDS |
| CAATTAAATGGATAAAGGAA+AGG | 0.554170 | 1.1:+7255705 | None:intergenic |
| AGGGCGATGAATACCAACTT+AGG | 0.558217 | 1.1:-7257366 | None:intergenic |
| AGGGAAGCGCGTGAGAAACC+GGG | 0.558868 | 1.1:-7255805 | None:intergenic |
| TTGTTGGAAACAGAAAGCTT+GGG | 0.565750 | 1.1:+7256297 | MS.gene33102:intron |
| TTAAGAACTTGTTAATGATG+GGG | 0.568371 | 1.1:+7256338 | MS.gene33102:CDS |
| TTCATCGCCCTTAATTTGGG+AGG | 0.578157 | 1.1:+7257378 | MS.gene33102:CDS |
| GGGTTGCCAAAGAGCTGAGA+AGG | 0.582231 | 1.1:-7256413 | None:intergenic |
| GGTAGAATCGTCTTGATCGA+GGG | 0.585755 | 1.1:-7255824 | None:intergenic |
| TAATGATGGGGTTTATGATG+TGG | 0.592983 | 1.1:+7256350 | MS.gene33102:CDS |
| ATAAGTGCCTTACAGAGTGT+TGG | 0.594768 | 1.1:+7256436 | MS.gene33102:CDS |
| GGGTAGAATCGTCTTGATCG+AGG | 0.613210 | 1.1:-7255825 | None:intergenic |
| TGAATTATCGGAGAAATCAA+CGG | 0.616548 | 1.1:-7255758 | None:intergenic |
| GATGGGGTTTATGATGTGGA+TGG | 0.644891 | 1.1:+7256354 | MS.gene33102:CDS |
| TGACACCCAGTCTGATGTGT+GGG | 0.677476 | 1.1:-7257819 | None:intergenic |
| ATGACACCCAGTCTGATGTG+TGG | 0.709294 | 1.1:-7257820 | None:intergenic |
| GAAGCGCGTGAGAAACCGGG+AGG | 0.725314 | 1.1:-7255802 | None:intergenic |
| ACCCAGTCTGATGTGTGGGT+AGG | 0.740029 | 1.1:-7257815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAATAATAAGTATA+TGG | - | chr1.1:7257743-7257762 | None:intergenic | 10.0% |
| !!! | TTTTTGATTAATTATATTGT+TGG | + | chr1.1:7256281-7256300 | MS.gene33102:intron | 10.0% |
| !! | AAAATACAGAAATTATACAT+AGG | - | chr1.1:7255951-7255970 | None:intergenic | 15.0% |
| !! | TATGTTCTATAATATATTTG+AGG | + | chr1.1:7257653-7257672 | MS.gene33102:intron | 15.0% |
| !! | TATTTAACAAAACAACAAAA+AGG | - | chr1.1:7256496-7256515 | None:intergenic | 15.0% |
| !! | TGTATGTTATTAAAATGTTT+GGG | + | chr1.1:7258045-7258064 | MS.gene33102:intron | 15.0% |
| !! | TTGTATGTTATTAAAATGTT+TGG | + | chr1.1:7258044-7258063 | MS.gene33102:intron | 15.0% |
| !! | TTTATATTATGGATGAAATT+AGG | + | chr1.1:7256716-7256735 | MS.gene33102:intron | 15.0% |
| !! | TTTGAAAATAAATCTATAAC+TGG | + | chr1.1:7258384-7258403 | MS.gene33102:intron | 15.0% |
| !!! | AAAAAAAATCTATAACTTGT+TGG | + | chr1.1:7258417-7258436 | MS.gene33102:intron | 15.0% |
| !! | AGTTACAATAATTAGTTACA+TGG | - | chr1.1:7256207-7256226 | None:intergenic | 20.0% |
| !! | ATACAATTACAATCATTGAA+TGG | - | chr1.1:7256630-7256649 | None:intergenic | 20.0% |
| !! | ATCATTAACAAGTTCTTAAA+TGG | - | chr1.1:7256337-7256356 | None:intergenic | 20.0% |
| !! | CAATGTTGATATTATTAGAA+TGG | - | chr1.1:7256578-7256597 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAAAAAAACCAG+AGG | + | chr1.1:7258089-7258108 | MS.gene33102:intron | 20.0% |
| !! | TTAATAACATACAATGCTAT+GGG | - | chr1.1:7258038-7258057 | None:intergenic | 20.0% |
| !! | TTTAATAACATACAATGCTA+TGG | - | chr1.1:7258039-7258058 | None:intergenic | 20.0% |
| !!! | AGTTATAGATTTTTTTTCAG+TGG | - | chr1.1:7258414-7258433 | None:intergenic | 20.0% |
| !!! | ATTTAAGAACTTGTTAATGA+TGG | + | chr1.1:7256336-7256355 | MS.gene33102:CDS | 20.0% |
| !!! | CATTATTTCTGATATTAAAG+TGG | - | chr1.1:7258358-7258377 | None:intergenic | 20.0% |
| !!! | CTATAATATATTTGAGGTTT+AGG | + | chr1.1:7257659-7257678 | MS.gene33102:intron | 20.0% |
| !!! | CTTAATATGTATTTGTTGAA+TGG | + | chr1.1:7256992-7257011 | MS.gene33102:intron | 20.0% |
| !!! | GAACACTTTATTTTAAATTG+TGG | + | chr1.1:7257148-7257167 | MS.gene33102:intron | 20.0% |
| !!! | GAGGTTGATTATTTATATTA+TGG | + | chr1.1:7256705-7256724 | MS.gene33102:intron | 20.0% |
| !!! | GGTTTTTTTTTTTTTTTCCT+GGG | - | chr1.1:7258087-7258106 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTTTTTTTTTTCC+TGG | - | chr1.1:7258088-7258107 | None:intergenic | 20.0% |
| !!! | TTACCTCAAATTTTAAGTTT+TGG | + | chr1.1:7257598-7257617 | MS.gene33102:intron | 20.0% |
| !!! | TTTAACTCATTTTTGTTTCA+AGG | - | chr1.1:7257437-7257456 | None:intergenic | 20.0% |
| !!! | TTTAAGAACTTGTTAATGAT+GGG | + | chr1.1:7256337-7256356 | MS.gene33102:CDS | 20.0% |
| ! | AAAATATGTAATTGCGTGTT+TGG | + | chr1.1:7257087-7257106 | MS.gene33102:intron | 25.0% |
| ! | AAAGAAAAATAAAGTCGAAC+TGG | + | chr1.1:7256814-7256833 | MS.gene33102:intron | 25.0% |
| ! | ACAAAACCATGTATATACTT+AGG | - | chr1.1:7257578-7257597 | None:intergenic | 25.0% |
| ! | ACTTAAAGAAAAGAAACCAA+GGG | - | chr1.1:7258488-7258507 | None:intergenic | 25.0% |
| ! | ATCTTATGAAAACAACGTAT+AGG | - | chr1.1:7256850-7256869 | None:intergenic | 25.0% |
| ! | ATTCTCAAGTTTGAAAATCT+TGG | + | chr1.1:7257715-7257734 | MS.gene33102:intron | 25.0% |
| ! | ATTGATAAACTCTTGATTCT+AGG | + | chr1.1:7257531-7257550 | MS.gene33102:intron | 25.0% |
| ! | ATTTATACACCAAATGATTG+TGG | - | chr1.1:7258244-7258263 | None:intergenic | 25.0% |
| ! | CATCTGATTGTAATTGTTTA+AGG | + | chr1.1:7256235-7256254 | MS.gene33102:intron | 25.0% |
| ! | GAACCAAAACTTAAAATTTG+AGG | - | chr1.1:7257604-7257623 | None:intergenic | 25.0% |
| ! | TATAAGCTGAAAACAACTTA+TGG | + | chr1.1:7256889-7256908 | MS.gene33102:intron | 25.0% |
| ! | TCAACTGATAATAAACGAAA+GGG | - | chr1.1:7256077-7256096 | None:intergenic | 25.0% |
| ! | TTGATAAACTCTTGATTCTA+GGG | + | chr1.1:7257532-7257551 | MS.gene33102:intron | 25.0% |
| ! | TTTATTATCAGTTGAGATGT+GGG | + | chr1.1:7256082-7256101 | MS.gene33102:intron | 25.0% |
| ! | TTTCAAGAATTGTGAAAAGA+TGG | + | chr1.1:7257241-7257260 | MS.gene33102:intron | 25.0% |
| !! | AACAATCGTAAATAGTTTGT+TGG | - | chr1.1:7256112-7256131 | None:intergenic | 25.0% |
| !! | ACATAATTTTACTGTCTTCA+AGG | + | chr1.1:7257955-7257974 | MS.gene33102:intron | 25.0% |
| !! | TATTTGTTGAATGGAATCAT+TGG | + | chr1.1:7257001-7257020 | MS.gene33102:intron | 25.0% |
| !! | TTCAGAGGACTAAAATATTT+TGG | - | chr1.1:7257915-7257934 | None:intergenic | 25.0% |
| !! | TTGCTTTATTGAGATGAAAT+TGG | + | chr1.1:7258146-7258165 | MS.gene33102:intron | 25.0% |
| !!! | CGTTTTAATTAATGTTTCAG+AGG | - | chr1.1:7257930-7257949 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGGTTCATTTTGT+TGG | + | chr1.1:7257611-7257630 | MS.gene33102:intron | 25.0% |
| !!! | TTAAGAACTTGTTAATGATG+GGG | + | chr1.1:7256338-7256357 | MS.gene33102:CDS | 25.0% |
| AAATCACAAAAGGATGAAGT+AGG | - | chr1.1:7258450-7258469 | None:intergenic | 30.0% | |
| AATCTACCAATTCTTCACTA+TGG | - | chr1.1:7258280-7258299 | None:intergenic | 30.0% | |
| ACAAAACAACAAAAAGGAAG+CGG | - | chr1.1:7256490-7256509 | None:intergenic | 30.0% | |
| ATACATATTAAGACCCTGTT+TGG | - | chr1.1:7256984-7257003 | None:intergenic | 30.0% | |
| ATAGATGAACCACAATCATT+TGG | + | chr1.1:7258232-7258251 | MS.gene33102:intron | 30.0% | |
| CACTTAAAGAAAAGAAACCA+AGG | - | chr1.1:7258489-7258508 | None:intergenic | 30.0% | |
| CCTGAAGATACAAAAAAGTA+AGG | - | chr1.1:7258519-7258538 | None:intergenic | 30.0% | |
| CTCAACTGATAATAAACGAA+AGG | - | chr1.1:7256078-7256097 | None:intergenic | 30.0% | |
| CTTACTACAAGTAATTTCTG+TGG | + | chr1.1:7258191-7258210 | MS.gene33102:intron | 30.0% | |
| GTGGTTCATCTATATTATTC+TGG | - | chr1.1:7258225-7258244 | None:intergenic | 30.0% | |
| GTTTATTATCAGTTGAGATG+TGG | + | chr1.1:7256081-7256100 | MS.gene33102:intron | 30.0% | |
| TATCAGCCTAAGTATATACA+TGG | + | chr1.1:7257569-7257588 | MS.gene33102:intron | 30.0% | |
| TGAATTATCGGAGAAATCAA+CGG | - | chr1.1:7255761-7255780 | None:intergenic | 30.0% | |
| TGGAGTAGTACTTATTAGAT+CGG | - | chr1.1:7256187-7256206 | None:intergenic | 30.0% | |
| ! | CTTGCGATGTTAAATCTTTT+AGG | + | chr1.1:7257171-7257190 | MS.gene33102:intron | 30.0% |
| ! | GTTCATTTTGTTGGATAGTT+GGG | + | chr1.1:7257620-7257639 | MS.gene33102:intron | 30.0% |
| ! | TGGATGAAATTAGGTTTGTT+TGG | + | chr1.1:7256725-7256744 | MS.gene33102:intron | 30.0% |
| !! | TTGGTTTGTTGTAACTCATT+AGG | + | chr1.1:7257052-7257071 | MS.gene33102:intron | 30.0% |
| !!! | CCTTACTTTTTTGTATCTTC+AGG | + | chr1.1:7258516-7258535 | MS.gene33102:intron | 30.0% |
| !!! | TACTTTTTTGTATCTTCAGG+AGG | + | chr1.1:7258519-7258538 | MS.gene33102:intron | 30.0% |
| AAACCAAAAGAGAAGAGAAC+TGG | - | chr1.1:7257039-7257058 | None:intergenic | 35.0% | |
| AACCAAAAGAGAAGAGAACT+GGG | - | chr1.1:7257038-7257057 | None:intergenic | 35.0% | |
| AAGATATCCTAGTGAGCTTA+TGG | + | chr1.1:7256865-7256884 | MS.gene33102:intron | 35.0% | |
| ACCTTACAAAGATGCTAAAG+TGG | + | chr1.1:7257332-7257351 | MS.gene33102:CDS | 35.0% | |
| ACTGATAATAAACGAAAGGG+AGG | - | chr1.1:7256074-7256093 | None:intergenic | 35.0% | |
| ACTGTTCACTTGTTTAGCAT+CGG | + | chr1.1:7256385-7256404 | MS.gene33102:CDS | 35.0% | |
| AGAAAGATGCTGAATCCAAT+TGG | + | chr1.1:7255860-7255879 | MS.gene33102:CDS | 35.0% | |
| AGGCAGTAACATGAATAACA+GGG | - | chr1.1:7257765-7257784 | None:intergenic | 35.0% | |
| ATCGCGAGAAGTTGAATTAT+CGG | - | chr1.1:7255773-7255792 | None:intergenic | 35.0% | |
| ATTGTTGGAAACAGAAAGCT+TGG | + | chr1.1:7256296-7256315 | MS.gene33102:intron | 35.0% | |
| CAAATAAGTCGATCCAAACA+GGG | + | chr1.1:7256968-7256987 | MS.gene33102:intron | 35.0% | |
| CATATGCCATAGTGAAGAAT+TGG | + | chr1.1:7258271-7258290 | MS.gene33102:intron | 35.0% | |
| CTTATATCCATAAGCTCACT+AGG | - | chr1.1:7256875-7256894 | None:intergenic | 35.0% | |
| CTTGATGTCTATAGATAACG+AGG | + | chr1.1:7256686-7256705 | MS.gene33102:intron | 35.0% | |
| GTATTCATCGCCCTTAATTT+GGG | + | chr1.1:7257375-7257394 | MS.gene33102:CDS | 35.0% | |
| TAACATACAATGCTATGGGT+AGG | - | chr1.1:7258034-7258053 | None:intergenic | 35.0% | |
| TAACATGCCTCCCAAATTAA+GGG | - | chr1.1:7257388-7257407 | None:intergenic | 35.0% | |
| TCAAATAAGTCGATCCAAAC+AGG | + | chr1.1:7256967-7256986 | MS.gene33102:intron | 35.0% | |
| TCCACTTTAGCATCTTTGTA+AGG | - | chr1.1:7257336-7257355 | None:intergenic | 35.0% | |
| TGAATCCAATTGGAAATCTC+AGG | + | chr1.1:7255870-7255889 | MS.gene33102:CDS | 35.0% | |
| TTGAATGGAGAGATTCAGTA+AGG | - | chr1.1:7256615-7256634 | None:intergenic | 35.0% | |
| TTGTTGGAAACAGAAAGCTT+GGG | + | chr1.1:7256297-7256316 | MS.gene33102:intron | 35.0% | |
| ! | ATCTTTCTTTTGGCGACTAA+GGG | - | chr1.1:7255848-7255867 | None:intergenic | 35.0% |
| ! | CTTCAAGGTATTATGACAAG+AGG | + | chr1.1:7257970-7257989 | MS.gene33102:intron | 35.0% |
| ! | GGTTCATTTTGTTGGATAGT+TGG | + | chr1.1:7257619-7257638 | MS.gene33102:intron | 35.0% |
| ! | GTCAGTCTCATAATTGCTTT+TGG | + | chr1.1:7256932-7256951 | MS.gene33102:intron | 35.0% |
| ! | TAATGATGGGGTTTATGATG+TGG | + | chr1.1:7256350-7256369 | MS.gene33102:CDS | 35.0% |
| ! | TGGATTCAGCATCTTTCTTT+TGG | - | chr1.1:7255858-7255877 | None:intergenic | 35.0% |
| !! | ACTTTTTCCAACACTCTGTA+AGG | - | chr1.1:7256446-7256465 | None:intergenic | 35.0% |
| !!! | TCTTTTAGGACCTTTGCAAT+TGG | + | chr1.1:7257185-7257204 | MS.gene33102:intron | 35.0% |
| !!! | TTTTTTGTATCTTCAGGAGG+TGG | + | chr1.1:7258522-7258541 | MS.gene33102:intron | 35.0% |
| AAAGAAAATCCAACCTGAGC+AGG | - | chr1.1:7257854-7257873 | None:intergenic | 40.0% | |
| AAGCATGTAATCATTGCCTC+TGG | - | chr1.1:7258108-7258127 | None:intergenic | 40.0% | |
| AATGAATTGAGCTGCAGAAG+AGG | - | chr1.1:7257785-7257804 | None:intergenic | 40.0% | |
| AGGCTGATAAATTCACTGCT+AGG | - | chr1.1:7257558-7257577 | None:intergenic | 40.0% | |
| ATAAGTGCCTTACAGAGTGT+TGG | + | chr1.1:7256436-7256455 | MS.gene33102:CDS | 40.0% | |
| ATCCACAGTTCCAATTGCAA+AGG | - | chr1.1:7257198-7257217 | None:intergenic | 40.0% | |
| ATGCTAAAGTGGAGCTTCTT+GGG | + | chr1.1:7257343-7257362 | MS.gene33102:CDS | 40.0% | |
| CAGCTCATGGAAATCACAAA+AGG | - | chr1.1:7258460-7258479 | None:intergenic | 40.0% | |
| CATGTTACTAGGTGTTTGGA+AGG | + | chr1.1:7257401-7257420 | MS.gene33102:CDS | 40.0% | |
| CTTCTGCAGCTCAATTCATT+GGG | + | chr1.1:7257785-7257804 | MS.gene33102:intron | 40.0% | |
| GAGGCAGTAACATGAATAAC+AGG | - | chr1.1:7257766-7257785 | None:intergenic | 40.0% | |
| GCATACCTGAGATTTCCAAT+TGG | - | chr1.1:7255878-7255897 | None:intergenic | 40.0% | |
| GGTATTCATCGCCCTTAATT+TGG | + | chr1.1:7257374-7257393 | MS.gene33102:CDS | 40.0% | |
| GTAACATGCCTCCCAAATTA+AGG | - | chr1.1:7257389-7257408 | None:intergenic | 40.0% | |
| TCTTCTGCAGCTCAATTCAT+TGG | + | chr1.1:7257784-7257803 | MS.gene33102:intron | 40.0% | |
| ! | AACACTCTGTAAGGCACTTA+TGG | - | chr1.1:7256437-7256456 | None:intergenic | 40.0% |
| ! | AATTTGGGAGGCATGTTACT+AGG | + | chr1.1:7257390-7257409 | MS.gene33102:CDS | 40.0% |
| ! | ACACTCTGTAAGGCACTTAT+GGG | - | chr1.1:7256436-7256455 | None:intergenic | 40.0% |
| ! | ATCCCAGTTCTCTTCTCTTT+TGG | + | chr1.1:7257033-7257052 | MS.gene33102:intron | 40.0% |
| ! | CATCTTTCTTTTGGCGACTA+AGG | - | chr1.1:7255849-7255868 | None:intergenic | 40.0% |
| ! | GATAAAGGAAAGGGTGTGAT+GGG | + | chr1.1:7255715-7255734 | MS.gene33102:CDS | 40.0% |
| AGGGCGATGAATACCAACTT+AGG | - | chr1.1:7257369-7257388 | None:intergenic | 45.0% | |
| ATCGGTCAATCATTCCCGTT+CGG | - | chr1.1:7256169-7256188 | None:intergenic | 45.0% | |
| ATCTTCACCTGAGATCTCGT+AGG | - | chr1.1:7256553-7256572 | None:intergenic | 45.0% | |
| CTCAACTCATAGATGCCGAA+CGG | + | chr1.1:7256151-7256170 | MS.gene33102:intron | 45.0% | |
| GACCTTTGCAATTGGAACTG+TGG | + | chr1.1:7257193-7257212 | MS.gene33102:intron | 45.0% | |
| GAGGCATGTTACTAGGTGTT+TGG | + | chr1.1:7257397-7257416 | MS.gene33102:CDS | 45.0% | |
| GATGCTAAAGTGGAGCTTCT+TGG | + | chr1.1:7257342-7257361 | MS.gene33102:CDS | 45.0% | |
| GATGGGGTTTATGATGTGGA+TGG | + | chr1.1:7256354-7256373 | MS.gene33102:CDS | 45.0% | |
| GCAACAATATCTGTAGACCC+AGG | + | chr1.1:7258067-7258086 | MS.gene33102:intron | 45.0% | |
| GGTAGAATCGTCTTGATCGA+GGG | - | chr1.1:7255827-7255846 | None:intergenic | 45.0% | |
| GTAGGTGTGTGAGTTTCAAG+TGG | - | chr1.1:7256535-7256554 | None:intergenic | 45.0% | |
| GTATCACCTTCTCAGCTCTT+TGG | + | chr1.1:7256407-7256426 | MS.gene33102:CDS | 45.0% | |
| TCAACTCATAGATGCCGAAC+GGG | + | chr1.1:7256152-7256171 | MS.gene33102:intron | 45.0% | |
| ! | GGATAAAGGAAAGGGTGTGA+TGG | + | chr1.1:7255714-7255733 | MS.gene33102:CDS | 45.0% |
| ! | TTCATCGCCCTTAATTTGGG+AGG | + | chr1.1:7257378-7257397 | MS.gene33102:CDS | 45.0% |
| ATGACACCCAGTCTGATGTG+TGG | - | chr1.1:7257823-7257842 | None:intergenic | 50.0% | |
| CGCGATATTATCGATCCTCC+CGG | + | chr1.1:7255787-7255806 | MS.gene33102:CDS | 50.0% | |
| GAAAGCTTGGGAAGTTGCAC+AGG | + | chr1.1:7256309-7256328 | MS.gene33102:intron | 50.0% | |
| GGGATCTTCTGGACGAAGAT+GGG | + | chr1.1:7255735-7255754 | MS.gene33102:CDS | 50.0% | |
| GGGTAGAATCGTCTTGATCG+AGG | - | chr1.1:7255828-7255847 | None:intergenic | 50.0% | |
| GGGTTTATGATGTGGATGGC+TGG | + | chr1.1:7256358-7256377 | MS.gene33102:CDS | 50.0% | |
| TCACACACCTACGAGATCTC+AGG | + | chr1.1:7256543-7256562 | MS.gene33102:intron | 50.0% | |
| TCCTACCCACACATCAGACT+GGG | + | chr1.1:7257814-7257833 | MS.gene33102:CDS | 50.0% | |
| TGACACCCAGTCTGATGTGT+GGG | - | chr1.1:7257822-7257841 | None:intergenic | 50.0% | |
| TGGGATCTTCTGGACGAAGA+TGG | + | chr1.1:7255734-7255753 | MS.gene33102:CDS | 50.0% | |
| TTCCTACCCACACATCAGAC+TGG | + | chr1.1:7257813-7257832 | MS.gene33102:CDS | 50.0% | |
| ! | AAGGGTGTGATGGGATCTTC+TGG | + | chr1.1:7255724-7255743 | MS.gene33102:CDS | 50.0% |
| ACCCAGTCTGATGTGTGGGT+AGG | - | chr1.1:7257818-7257837 | None:intergenic | 55.0% | |
| GGAGCTTCTTGGGCCTAAGT+TGG | + | chr1.1:7257353-7257372 | MS.gene33102:CDS | 55.0% | |
| GGGTTGCCAAAGAGCTGAGA+AGG | - | chr1.1:7256416-7256435 | None:intergenic | 55.0% | |
| GTCATCCTTAGCACCTGCTC+AGG | + | chr1.1:7257838-7257857 | MS.gene33102:CDS | 55.0% | |
| TCCAACCTGAGCAGGTGCTA+AGG | - | chr1.1:7257846-7257865 | None:intergenic | 55.0% | |
| TCCATGAGCTGCAACACCCT+TGG | + | chr1.1:7258469-7258488 | MS.gene33102:intron | 55.0% | |
| TCCTTAGCACCTGCTCAGGT+TGG | + | chr1.1:7257842-7257861 | MS.gene33102:intron | 55.0% | |
| ! | AGGAGGTGGAGTACTCAGGT+GGG | + | chr1.1:7258536-7258555 | MS.gene33102:intron | 55.0% |
| ! | CTTCAGGAGGTGGAGTACTC+AGG | + | chr1.1:7258532-7258551 | MS.gene33102:intron | 55.0% |
| !! | ACCAAGGGTGTTGCAGCTCA+TGG | - | chr1.1:7258473-7258492 | None:intergenic | 55.0% |
| ! | AGGGAAGCGCGTGAGAAACC+GGG | - | chr1.1:7255808-7255827 | None:intergenic | 60.0% |
| ! | CAGGAGGTGGAGTACTCAGG+TGG | + | chr1.1:7258535-7258554 | MS.gene33102:intron | 60.0% |
| ! | GAGGGAAGCGCGTGAGAAAC+CGG | - | chr1.1:7255809-7255828 | None:intergenic | 60.0% |
| ! | GAGGTGGAGTACTCAGGTGG+GGG | + | chr1.1:7258538-7258557 | MS.gene33102:CDS | 60.0% |
| ! | GGAGGTGGAGTACTCAGGTG+GGG | + | chr1.1:7258537-7258556 | MS.gene33102:intron | 60.0% |
| GAAGCGCGTGAGAAACCGGG+AGG | - | chr1.1:7255805-7255824 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 7255712 | 7258576 | 7255712 | ID=MS.gene33102 |
| chr1.1 | mRNA | 7255712 | 7258576 | 7255712 | ID=MS.gene33102.t1;Parent=MS.gene33102 |
| chr1.1 | exon | 7255712 | 7255891 | 7255712 | ID=MS.gene33102.t1.exon1;Parent=MS.gene33102.t1 |
| chr1.1 | CDS | 7255712 | 7255891 | 7255712 | ID=cds.MS.gene33102.t1;Parent=MS.gene33102.t1 |
| chr1.1 | exon | 7256310 | 7256463 | 7256310 | ID=MS.gene33102.t1.exon2;Parent=MS.gene33102.t1 |
| chr1.1 | CDS | 7256310 | 7256463 | 7256310 | ID=cds.MS.gene33102.t1;Parent=MS.gene33102.t1 |
| chr1.1 | exon | 7257325 | 7257422 | 7257325 | ID=MS.gene33102.t1.exon3;Parent=MS.gene33102.t1 |
| chr1.1 | CDS | 7257325 | 7257422 | 7257325 | ID=cds.MS.gene33102.t1;Parent=MS.gene33102.t1 |
| chr1.1 | exon | 7257794 | 7257859 | 7257794 | ID=MS.gene33102.t1.exon4;Parent=MS.gene33102.t1 |
| chr1.1 | CDS | 7257794 | 7257859 | 7257794 | ID=cds.MS.gene33102.t1;Parent=MS.gene33102.t1 |
| chr1.1 | exon | 7258538 | 7258576 | 7258538 | ID=MS.gene33102.t1.exon5;Parent=MS.gene33102.t1 |
| chr1.1 | CDS | 7258538 | 7258576 | 7258538 | ID=cds.MS.gene33102.t1;Parent=MS.gene33102.t1 |
| Gene Sequence |
| Protein sequence |
