AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33107

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33107.t1 MTR_1g013760 96.491 285 9 1 1 284 1 285 0.0 570
MS.gene33107.t1 MTR_3g106060 58.983 295 92 9 1 275 1 286 4.61e-102 300
MS.gene33107.t1 MTR_2g105060 46.494 271 111 5 24 275 58 313 4.16e-67 211
MS.gene33107.t1 MTR_2g105060 45.238 252 104 5 43 275 2 238 1.87e-59 189
MS.gene33107.t1 MTR_4g007060 41.971 274 126 7 25 275 17 280 3.87e-52 172
MS.gene33107.t1 MTR_4g007060 42.014 288 131 9 11 275 40 314 5.96e-52 172
MS.gene33107.t1 MTR_1g013790 38.306 248 122 6 46 276 5 238 4.86e-42 145
MS.gene33107.t1 MTR_7g110720 29.080 337 165 8 6 274 71 401 1.59e-31 121
MS.gene33107.t1 MTR_7g110720 29.042 334 142 8 6 274 71 374 1.35e-30 118
MS.gene33107.t1 MTR_4g007060 42.857 175 82 4 11 179 40 202 3.52e-29 111
MS.gene33107.t1 MTR_2g023930 32.864 213 99 4 28 196 150 362 3.28e-27 110
MS.gene33107.t1 MTR_3g053330 33.010 206 80 5 124 271 236 441 9.86e-25 103
MS.gene33107.t1 MTR_4g132430 30.000 220 105 5 25 205 118 327 1.33e-24 103
MS.gene33107.t1 MTR_4g094412 52.564 78 37 0 119 196 214 291 7.44e-24 100
MS.gene33107.t1 MTR_4g094412 52.564 78 37 0 119 196 223 300 7.80e-24 100
MS.gene33107.t1 MTR_4g107970 56.000 75 33 0 122 196 161 235 1.33e-23 100
MS.gene33107.t1 MTR_4g107970 56.000 75 33 0 122 196 238 312 1.56e-23 100
MS.gene33107.t1 MTR_2g088000 48.889 90 46 0 124 213 334 423 3.07e-23 99.4
MS.gene33107.t1 MTR_7g009730 53.333 75 35 0 122 196 202 276 3.65e-23 99.4
MS.gene33107.t1 MTR_2g045360 41.739 115 56 3 91 196 156 268 1.13e-22 97.1
MS.gene33107.t1 MTR_4g132430 50.000 82 41 0 124 205 112 193 2.04e-22 95.5
MS.gene33107.t1 MTR_4g049760 52.055 73 35 0 124 196 275 347 2.11e-20 91.3
MS.gene33107.t1 MTR_4g049790 34.337 166 91 4 55 215 236 388 1.69e-19 88.6
MS.gene33107.t1 MTR_5g094430 57.895 57 23 1 140 196 231 286 1.86e-19 87.8
MS.gene33107.t1 MTR_5g094430 57.895 57 23 1 140 196 253 308 1.99e-19 87.8
MS.gene33107.t1 MTR_5g094430 34.862 109 62 3 95 196 37 143 9.55e-11 62.4
MS.gene33107.t1 MTR_1g086790 41.667 96 51 2 123 218 146 236 2.09e-19 86.7
MS.gene33107.t1 MTR_5g094430 57.895 57 23 1 140 196 365 420 2.27e-19 88.2
MS.gene33107.t1 MTR_3g056100 39.286 112 59 4 91 196 219 327 2.40e-19 87.8
MS.gene33107.t1 MTR_3g056100 39.286 112 59 4 91 196 206 314 2.49e-19 87.8
MS.gene33107.t1 MTR_3g056100 39.286 112 59 4 91 196 350 458 2.57e-19 88.2
MS.gene33107.t1 MTR_3g056100 39.286 112 59 4 91 196 363 471 2.58e-19 88.2
MS.gene33107.t1 MTR_5g016610 54.386 57 26 0 140 196 200 256 2.74e-19 85.5
MS.gene33107.t1 MTR_7g109800 49.351 77 36 2 120 196 128 201 3.26e-19 85.9
MS.gene33107.t1 MTR_5g097490 52.703 74 32 2 124 197 239 309 3.68e-19 86.7
MS.gene33107.t1 MTR_5g091390 47.297 74 34 2 123 196 145 213 5.94e-19 85.1
MS.gene33107.t1 MTR_4g094588 57.895 57 23 1 140 196 179 234 6.14e-19 85.5
MS.gene33107.t1 MTR_5g043880 42.308 104 48 4 99 196 83 180 6.20e-19 84.7
MS.gene33107.t1 MTR_4g094908 50.769 65 32 0 140 204 267 331 6.98e-19 85.5
MS.gene33107.t1 MTR_1g070455 49.315 73 35 1 127 197 279 351 9.44e-19 85.5
MS.gene33107.t1 MTR_1g009613 36.538 104 55 1 93 196 227 319 1.90e-18 84.3
MS.gene33107.t1 MTR_5g074400 41.935 93 47 4 105 196 390 476 5.13e-18 84.3
MS.gene33107.t1 MTR_5g074400 50.877 57 26 2 140 196 244 298 1.75e-13 70.9
MS.gene33107.t1 MTR_7g100510 50.746 67 32 1 130 196 352 417 5.63e-18 83.6
MS.gene33107.t1 MTR_7g100510 53.333 75 26 4 140 207 190 262 1.86e-16 79.3
MS.gene33107.t1 MTR_3g104750 44.737 76 39 2 121 196 88 160 5.96e-18 79.3
MS.gene33107.t1 MTR_2g033820 47.297 74 34 2 123 196 191 259 6.25e-18 83.2
MS.gene33107.t1 MTR_4g082580 46.341 82 38 3 115 196 259 334 6.33e-18 83.2
MS.gene33107.t1 MTR_5g042920 45.122 82 39 3 115 196 301 376 6.49e-18 83.6
MS.gene33107.t1 MTR_5g042920 54.386 57 24 2 140 196 152 206 4.89e-14 72.0
MS.gene33107.t1 MTR_7g011820 34.127 126 77 3 71 196 347 466 1.39e-17 82.8
MS.gene33107.t1 MTR_7g011820 49.123 57 27 2 140 196 229 283 2.70e-11 63.9
MS.gene33107.t1 MTR_7g062220 49.333 75 37 1 140 214 125 198 4.06e-17 80.1
MS.gene33107.t1 MTR_3g031220 46.575 73 36 2 124 196 352 421 6.91e-17 80.9
MS.gene33107.t1 MTR_3g031220 52.632 57 25 2 140 196 199 253 1.23e-13 71.2
MS.gene33107.t1 MTR_8g087000 51.724 58 28 0 140 197 78 135 7.66e-17 78.2
MS.gene33107.t1 MTR_8g087000 51.724 58 28 0 140 197 77 134 9.30e-17 78.2
MS.gene33107.t1 MTR_1g015140 50.877 57 27 1 140 196 103 158 1.62e-16 75.5
MS.gene33107.t1 MTR_0117s0040 52.632 57 27 0 140 196 75 131 1.68e-16 77.4
MS.gene33107.t1 MTR_4g013260 41.304 92 48 3 105 196 307 392 1.69e-16 79.7
MS.gene33107.t1 MTR_4g013260 49.123 57 28 1 140 196 185 240 2.84e-13 70.1
MS.gene33107.t1 MTR_4g127040 50.000 58 29 0 140 197 246 303 2.90e-16 77.8
MS.gene33107.t1 MTR_3g108960 52.632 57 27 0 140 196 315 371 3.15e-16 78.6
MS.gene33107.t1 MTR_2g016770 49.123 57 29 0 140 196 36 92 3.38e-16 75.9
MS.gene33107.t1 MTR_7g079010 54.098 61 27 1 140 200 142 201 4.19e-16 75.9
MS.gene33107.t1 MTR_2g016770 49.123 57 29 0 140 196 28 84 4.38e-16 75.5
MS.gene33107.t1 MTR_3g009470 34.921 126 70 4 124 240 482 604 4.62e-16 78.6
MS.gene33107.t1 MTR_3g009470 50.877 57 26 2 140 196 281 335 6.37e-12 66.2
MS.gene33107.t1 MTR_7g028415 52.459 61 28 1 140 200 94 153 5.41e-16 74.3
MS.gene33107.t1 MTR_7g028710 52.459 61 28 1 140 200 94 153 5.41e-16 74.3
MS.gene33107.t1 MTR_3g095080 52.632 57 26 1 140 196 145 200 6.69e-16 75.1
MS.gene33107.t1 MTR_7g080000 42.857 84 42 3 113 196 411 488 6.83e-16 78.2
MS.gene33107.t1 MTR_8g092140 52.632 57 26 1 140 196 161 216 7.10e-16 75.5
MS.gene33107.t1 MTR_3g095080 52.632 57 26 1 140 196 169 224 8.28e-16 75.5
MS.gene33107.t1 MTR_7g071120 45.205 73 37 2 124 196 311 380 1.01e-15 77.4
MS.gene33107.t1 MTR_7g071120 49.123 57 27 2 140 196 167 221 1.75e-11 64.7
MS.gene33107.t1 MTR_2g024350 33.607 122 74 3 140 254 9 130 1.18e-15 74.7
MS.gene33107.t1 MTR_1g077780 41.026 78 43 2 119 196 44 118 1.25e-15 72.8
MS.gene33107.t1 MTR_4g122530 45.205 73 37 2 124 196 195 264 1.74e-15 76.3
MS.gene33107.t1 MTR_8g007270 52.632 57 26 1 140 196 155 210 2.49e-15 73.9
MS.gene33107.t1 MTR_2g083870 52.632 57 27 0 140 196 81 137 2.51e-15 74.3
MS.gene33107.t1 MTR_7g080020 42.857 84 42 3 113 196 472 549 2.80e-15 76.3
MS.gene33107.t1 MTR_8g096730 45.161 62 33 1 140 201 71 131 8.42e-15 70.5
MS.gene33107.t1 MTR_2g032030 42.857 77 39 1 125 196 248 324 1.25e-14 73.9
MS.gene33107.t1 MTR_2g032030 42.857 77 39 1 125 196 248 324 1.43e-14 73.9
MS.gene33107.t1 MTR_2g024380 32.773 119 73 3 140 251 252 370 1.86e-14 73.6
MS.gene33107.t1 MTR_4g130900 49.123 57 28 1 140 196 360 415 2.10e-14 73.2
MS.gene33107.t1 MTR_8g098945 49.123 57 29 0 140 196 130 186 2.66e-14 71.6
MS.gene33107.t1 MTR_3g095040 49.123 57 28 1 140 196 119 174 3.32e-14 70.1
MS.gene33107.t1 MTR_8g028565 45.614 57 31 0 140 196 156 212 8.01e-14 70.9
MS.gene33107.t1 MTR_3g031220 52.632 57 25 2 140 196 199 253 8.97e-14 71.2
MS.gene33107.t1 MTR_8g092010 31.343 134 77 5 66 196 43 164 1.05e-13 68.6
MS.gene33107.t1 MTR_7g109600 47.368 57 30 0 140 196 54 110 1.35e-13 69.7
MS.gene33107.t1 MTR_7g079040 47.368 57 30 0 140 196 155 211 1.70e-13 70.1
MS.gene33107.t1 MTR_6g086555 39.773 88 47 4 111 197 182 264 2.02e-13 70.1
MS.gene33107.t1 MTR_4g047580 35.870 92 59 0 124 215 266 357 2.13e-13 70.5
MS.gene33107.t1 MTR_1g099600 36.842 76 48 0 140 215 186 261 7.65e-13 67.8
MS.gene33107.t1 MTR_1g078260 41.333 75 40 3 124 197 234 305 1.05e-12 68.2
MS.gene33107.t1 MTR_8g099350 50.877 57 26 1 140 194 133 189 6.81e-12 65.5
MS.gene33107.t1 MTR_3g009470 50.877 57 26 2 140 196 281 335 7.19e-12 65.9
MS.gene33107.t1 MTR_5g097500 46.479 71 36 2 126 196 218 286 9.82e-12 64.7
MS.gene33107.t1 MTR_3g090860 50.877 57 26 1 140 194 134 190 1.16e-11 64.7
MS.gene33107.t1 MTR_5g067680 49.123 57 27 1 140 194 203 259 1.24e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33107.t1 AT1G80840 42.140 299 136 8 3 274 6 294 5.04e-69 216
MS.gene33107.t1 AT2G25000 41.697 271 110 8 19 278 36 269 1.37e-59 191
MS.gene33107.t1 AT4G31800 43.657 268 129 8 25 278 49 308 1.41e-59 192
MS.gene33107.t1 AT2G25000 41.825 263 108 7 24 278 1 226 2.29e-59 189
MS.gene33107.t1 AT2G25000 41.825 263 108 7 24 278 1 226 2.29e-59 189
MS.gene33107.t1 AT2G25000 41.729 266 110 7 21 278 20 248 5.25e-59 189
MS.gene33107.t1 AT4G31800 54.706 170 67 4 111 278 82 243 4.07e-53 173
MS.gene33107.t1 AT4G31800 41.765 170 76 4 25 176 49 213 2.14e-32 119
MS.gene33107.t1 AT4G01720 33.503 197 98 4 28 196 105 296 1.78e-24 102
MS.gene33107.t1 AT4G04450 48.913 92 47 0 124 215 183 274 2.03e-24 102
MS.gene33107.t1 AT4G04450 48.913 92 47 0 124 215 277 368 4.90e-24 101
MS.gene33107.t1 AT1G68150 49.485 97 48 1 115 210 210 306 6.81e-24 100
MS.gene33107.t1 AT4G22070 54.795 73 33 0 124 196 282 354 5.25e-23 98.6
MS.gene33107.t1 AT4G22070 54.795 73 33 0 124 196 282 354 5.25e-23 98.6
MS.gene33107.t1 AT4G22070 54.795 73 33 0 124 196 282 354 5.25e-23 98.6
MS.gene33107.t1 AT4G22070 54.795 73 33 0 124 196 282 354 5.25e-23 98.6
MS.gene33107.t1 AT1G62300 54.795 73 33 0 124 196 297 369 7.99e-23 98.2
MS.gene33107.t1 AT5G15130 52.703 74 35 0 140 213 186 259 4.65e-22 95.9
MS.gene33107.t1 AT5G15130 52.703 74 35 0 140 213 228 301 6.19e-22 95.5
MS.gene33107.t1 AT1G18860 64.912 57 20 0 140 196 240 296 1.98e-21 94.0
MS.gene33107.t1 AT1G29860 53.333 60 27 1 137 196 134 192 4.47e-19 85.1
MS.gene33107.t1 AT4G18170 53.333 60 27 1 137 196 170 228 4.55e-19 85.9
MS.gene33107.t1 AT1G64000 57.377 61 25 1 140 200 115 174 4.99e-19 83.2
MS.gene33107.t1 AT2G47260 55.000 60 26 1 137 196 172 230 1.26e-18 84.7
MS.gene33107.t1 AT2G04880 57.627 59 24 1 138 196 282 339 1.28e-18 85.9
MS.gene33107.t1 AT5G26170 50.877 57 27 1 140 196 114 169 1.31e-18 81.6
MS.gene33107.t1 AT5G07100 38.614 101 58 3 96 196 101 197 1.37e-18 82.4
MS.gene33107.t1 AT5G07100 46.479 71 37 1 126 196 11 80 6.85e-14 69.7
MS.gene33107.t1 AT5G07100 38.614 101 58 3 96 196 101 197 1.37e-18 82.4
MS.gene33107.t1 AT5G07100 46.479 71 37 1 126 196 11 80 6.85e-14 69.7
MS.gene33107.t1 AT5G07100 38.614 101 58 3 96 196 101 197 1.37e-18 82.4
MS.gene33107.t1 AT5G07100 46.479 71 37 1 126 196 11 80 6.85e-14 69.7
MS.gene33107.t1 AT5G07100 38.614 101 58 3 96 196 101 197 1.37e-18 82.4
MS.gene33107.t1 AT5G07100 46.479 71 37 1 126 196 11 80 6.85e-14 69.7
MS.gene33107.t1 AT2G04880 57.627 59 24 1 138 196 306 363 1.43e-18 85.5
MS.gene33107.t1 AT5G41570 57.377 61 25 1 140 200 99 158 2.26e-18 81.3
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.68e-18 84.3
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.68e-18 84.3
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.68e-18 84.3
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 206 261 2.68e-18 84.3
MS.gene33107.t1 AT1G13960 45.122 82 39 3 115 196 237 312 3.25e-18 84.0
MS.gene33107.t1 AT1G13960 52.632 57 25 2 140 196 77 131 4.54e-13 68.9
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 310 365 4.27e-18 84.3
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 342 397 4.30e-18 84.3
MS.gene33107.t1 AT4G26640 56.140 57 24 1 140 196 382 437 4.47e-18 84.3
MS.gene33107.t1 AT5G46350 47.222 72 33 2 125 196 173 239 5.76e-18 82.8
MS.gene33107.t1 AT4G31550 52.632 57 27 0 140 196 247 303 5.81e-18 82.8
MS.gene33107.t1 AT4G31550 52.632 57 27 0 140 196 246 302 5.98e-18 82.8
MS.gene33107.t1 AT5G49520 47.222 72 34 2 140 208 222 292 6.06e-18 83.6
MS.gene33107.t1 AT2G03340 45.122 82 39 3 115 196 396 471 6.59e-18 84.0
MS.gene33107.t1 AT2G03340 52.632 57 25 2 140 196 251 305 9.66e-14 71.6
MS.gene33107.t1 AT1G13960 45.122 82 39 3 115 196 390 465 7.05e-18 83.6
MS.gene33107.t1 AT1G13960 52.632 57 25 2 140 196 230 284 5.88e-13 68.9
MS.gene33107.t1 AT5G07100 38.614 101 58 3 96 196 194 290 7.11e-18 82.4
MS.gene33107.t1 AT5G07100 46.479 71 37 1 126 196 104 173 2.27e-13 69.3
MS.gene33107.t1 AT2G30590 54.386 57 26 0 140 196 314 370 7.35e-18 83.2
MS.gene33107.t1 AT1G69810 50.000 74 36 1 124 196 130 203 2.66e-17 80.9
MS.gene33107.t1 AT3G62340 51.562 64 30 1 133 196 112 174 3.12e-17 80.1
MS.gene33107.t1 AT1G69310 54.386 57 25 1 140 196 148 203 3.28e-17 80.1
MS.gene33107.t1 AT1G69310 54.386 57 25 1 140 196 148 203 3.28e-17 80.1
MS.gene33107.t1 AT1G69310 54.386 57 25 1 140 196 148 203 3.28e-17 80.1
MS.gene33107.t1 AT1G69810 50.000 74 36 1 124 196 188 261 3.42e-17 81.3
MS.gene33107.t1 AT2G23320 49.123 57 29 0 140 196 241 297 4.09e-17 80.1
MS.gene33107.t1 AT2G24570 52.632 57 27 0 140 196 244 300 4.79e-17 80.1
MS.gene33107.t1 AT5G56270 47.945 73 35 2 124 196 474 543 4.91e-17 81.3
MS.gene33107.t1 AT5G56270 27.461 193 121 6 9 196 150 328 6.09e-12 66.2
MS.gene33107.t1 AT5G13080 53.226 62 28 1 140 201 68 128 6.33e-17 76.3
MS.gene33107.t1 AT3G01080 43.902 82 40 3 115 196 287 362 7.75e-17 80.5
MS.gene33107.t1 AT3G01080 49.123 57 27 2 140 196 168 222 8.18e-11 62.4
MS.gene33107.t1 AT5G28650 45.833 72 37 1 127 196 248 319 8.32e-17 79.7
MS.gene33107.t1 AT1G29280 50.877 57 28 0 140 196 75 131 8.86e-17 78.6
MS.gene33107.t1 AT3G01080 46.575 73 36 2 124 196 331 400 9.24e-17 80.1
MS.gene33107.t1 AT3G01080 49.123 57 27 2 140 196 206 260 7.78e-11 62.8
MS.gene33107.t1 AT4G24240 48.276 58 30 0 140 197 282 339 1.39e-16 79.3
MS.gene33107.t1 AT3G04670 44.444 72 38 1 127 196 248 319 2.12e-16 78.6
MS.gene33107.t1 AT2G38470 52.632 57 26 1 140 196 363 418 3.05e-16 79.0
MS.gene33107.t1 AT2G38470 52.632 57 25 2 140 196 185 239 1.09e-13 71.2
MS.gene33107.t1 AT2G44745 52.632 57 26 1 140 196 146 201 1.29e-15 74.3
MS.gene33107.t1 AT3G01970 49.180 61 30 1 140 200 66 125 1.44e-15 72.8
MS.gene33107.t1 AT4G30935 45.455 66 35 1 131 196 323 387 1.61e-15 76.6
MS.gene33107.t1 AT2G30250 45.205 73 37 2 124 196 315 384 2.43e-15 75.9
MS.gene33107.t1 AT2G30250 46.479 71 34 3 140 210 167 233 2.33e-11 63.9
MS.gene33107.t1 AT2G37260 45.588 68 36 1 129 196 259 325 4.76e-15 74.7
MS.gene33107.t1 AT2G37260 45.070 71 37 2 126 196 72 140 1.27e-14 73.6
MS.gene33107.t1 AT2G37260 45.588 68 36 1 129 196 339 405 5.22e-15 75.1
MS.gene33107.t1 AT2G37260 45.070 71 37 2 126 196 152 220 1.31e-14 73.9
MS.gene33107.t1 AT2G37260 45.588 68 36 1 129 196 257 323 5.27e-15 74.7
MS.gene33107.t1 AT2G37260 45.070 71 37 2 126 196 70 138 1.34e-14 73.6
MS.gene33107.t1 AT1G55600 50.000 62 30 1 140 201 308 368 5.35e-15 75.1
MS.gene33107.t1 AT2G34830 47.692 65 34 0 132 196 208 272 7.01e-15 74.7
MS.gene33107.t1 AT2G34830 47.692 65 34 0 132 196 217 281 7.25e-15 74.7
MS.gene33107.t1 AT4G39410 50.877 57 27 1 140 196 224 279 9.42e-15 73.6
MS.gene33107.t1 AT2G21900 44.444 72 38 2 126 196 95 165 1.03e-14 71.6
MS.gene33107.t1 AT1G30650 47.692 65 34 0 132 196 210 274 1.55e-14 73.6
MS.gene33107.t1 AT3G58710 49.123 57 29 0 140 196 72 128 2.29e-14 72.0
MS.gene33107.t1 AT3G58710 49.123 57 29 0 140 196 71 127 2.62e-14 71.6
MS.gene33107.t1 AT5G64810 45.614 57 30 1 140 196 111 166 8.26e-14 68.9
MS.gene33107.t1 AT4G01250 45.614 57 31 0 140 196 129 185 8.81e-14 70.5
MS.gene33107.t1 AT2G46130 50.877 57 27 1 140 196 31 86 1.09e-13 66.6
MS.gene33107.t1 AT5G43290 40.789 76 43 2 121 196 97 170 1.84e-13 69.3
MS.gene33107.t1 AT5G52830 49.123 57 29 0 140 196 166 222 2.12e-13 69.7
MS.gene33107.t1 AT4G26440 43.836 73 38 2 124 196 359 428 2.63e-13 70.1
MS.gene33107.t1 AT4G26440 47.368 57 28 2 140 196 179 233 7.31e-11 62.8
MS.gene33107.t1 AT5G45050 34.951 103 64 1 94 196 1110 1209 4.44e-13 69.7
MS.gene33107.t1 AT5G45050 34.951 103 64 1 94 196 1138 1237 4.67e-13 69.7
MS.gene33107.t1 AT5G45050 34.951 103 64 1 94 196 999 1098 5.03e-13 69.7
MS.gene33107.t1 AT1G69310 50.877 57 23 2 140 196 148 199 8.89e-13 67.4
MS.gene33107.t1 AT4G23550 30.435 138 87 3 140 275 141 271 1.39e-12 67.4
MS.gene33107.t1 AT2G46400 43.836 73 37 2 124 194 91 161 4.04e-12 65.9
MS.gene33107.t1 AT3G01080 49.123 57 27 2 140 196 206 260 7.47e-11 62.4
MS.gene33107.t1 AT5G24110 27.778 162 99 5 50 194 10 170 9.57e-11 61.6

Find 45 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCTGGAAGAATTT+TGG 0.107436 1.1:+7363019 MS.gene33107:CDS
GCACTTGCCACTGCTATTTC+TGG 0.167473 1.1:+7363008 MS.gene33107:CDS
AATTGCTGGATAGATGATTT+TGG 0.173303 1.1:-7362933 None:intergenic
TGGAACATTATCAAGCTTAA+TGG 0.220468 1.1:-7362913 None:intergenic
TTCCTCACCTAAGGCTTATA+AGG 0.237117 1.1:+7361823 MS.gene33107:CDS
TCTTTCTTGATTGTTGTGTT+TGG 0.315541 1.1:-7361673 None:intergenic
GCAAGTGCTGTAGTGAAATT+AGG 0.319456 1.1:-7362993 None:intergenic
CAAAGTGAAGAAGCTCCTTT+AGG 0.328438 1.1:+7362840 MS.gene33107:CDS
GGATATCAATGGAGGAAATA+TGG 0.328462 1.1:+7362057 MS.gene33107:CDS
AATATGTTTGATACTGTTAG+AGG 0.330331 1.1:+7361722 MS.gene33107:CDS
ATTTGTTCTTATTAGAAGTA+TGG 0.343403 1.1:-7363043 None:intergenic
TTATGTGCAGGACGAAGTTT+TGG 0.348061 1.1:+7361526 MS.gene33107:intron
CCTCTCCTAGAGCTTACTTT+AGG 0.371319 1.1:+7362103 MS.gene33107:CDS
TATGTTGCAACTAGTATAGT+AGG 0.404321 1.1:-7362762 None:intergenic
ATGAAGAATCATTAATCAAA+AGG 0.454669 1.1:+7361786 MS.gene33107:CDS
CTAAAGGAGCTTCTTCACTT+TGG 0.478227 1.1:-7362839 None:intergenic
ATACTTCTAATAAGAACAAA+TGG 0.482703 1.1:+7363045 MS.gene33107:CDS
ATGGAGGAAATATGGTCAAA+AGG 0.485930 1.1:+7362065 MS.gene33107:CDS
ACAAGAACCTTATAAGCCTT+AGG 0.486641 1.1:-7361830 None:intergenic
ACATTATCAAGCTTAATGGT+TGG 0.490629 1.1:-7362909 None:intergenic
CATTAATCAAAAGGCCATGT+AGG 0.493040 1.1:+7361795 MS.gene33107:CDS
ATACTAGTTGCAACATATGA+AGG 0.494693 1.1:+7362768 MS.gene33107:CDS
TAGGGATATTTCCTCACCTA+AGG 0.500791 1.1:+7361814 MS.gene33107:CDS
AACTGGGCAGCTTGGAGCAT+AGG 0.506437 1.1:-7362130 None:intergenic
TAGTGCTTCTTCTATACTCA+AGG 0.512134 1.1:+7361057 MS.gene33107:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.538868 1.1:-7362108 None:intergenic
ATTAATCAAAAGGCCATGTA+GGG 0.538909 1.1:+7361796 MS.gene33107:CDS
CCTAAAGTAAGCTCTAGGAG+AGG 0.548395 1.1:-7362103 None:intergenic
CTCATAGTTCTCACACATGT+TGG 0.554828 1.1:-7361603 None:intergenic
GTAACATGAACTGAACCTAA+AGG 0.560432 1.1:-7362855 None:intergenic
CTAAAGTAAGCTCTAGGAGA+GGG 0.569732 1.1:-7362102 None:intergenic
GTCTCAGTTCTGAGAACAAG+AGG 0.575865 1.1:+7361564 MS.gene33107:CDS
TTTCAGCTTTCTCATGACCA+TGG 0.582497 1.1:-7362800 None:intergenic
AACAATGGAATCAACATGCG+TGG 0.589289 1.1:+7361012 None:intergenic
GGTATAAAGTATGTGATGGA+TGG 0.592987 1.1:+7362036 MS.gene33107:intron
ATGTGATGGATGGATATCAA+TGG 0.593080 1.1:+7362046 MS.gene33107:CDS
TTGTGGTATAAAGTATGTGA+TGG 0.595565 1.1:+7362032 MS.gene33107:intron
ATGTTGCAACTAGTATAGTA+GGG 0.601976 1.1:-7362761 None:intergenic
GGTGAGGAAATATCCCTACA+TGG 0.620508 1.1:-7361809 None:intergenic
GTTCTTTGAATAATTTGTTG+AGG 0.631715 1.1:-7362882 None:intergenic
AACCTTATAAGCCTTAGGTG+AGG 0.658225 1.1:-7361825 None:intergenic
TAAAGTAAGCTCTAGGAGAG+GGG 0.664718 1.1:-7362101 None:intergenic
TGATGGATGGATATCAATGG+AGG 0.669535 1.1:+7362049 MS.gene33107:CDS
AATTCTTCCAGAAATAGCAG+TGG 0.680346 1.1:-7363015 None:intergenic
TATGAAGGAGAGCACAACCA+TGG 0.694590 1.1:+7362783 MS.gene33107:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAATAATTTAGT+AGG + chr1.1:7362281-7362300 MS.gene33107:intron 10.0%
!! AAATTAATATACAATACTTA+GGG - chr1.1:7361337-7361356 None:intergenic 10.0%
!! TATATTAATTTCACTAAAAA+TGG + chr1.1:7361346-7361365 MS.gene33107:intron 10.0%
!!! TTGATTTGAAAAAAATAATT+CGG + chr1.1:7362438-7362457 MS.gene33107:intron 10.0%
!! GAAATTAATATACAATACTT+AGG - chr1.1:7361338-7361357 None:intergenic 15.0%
!! TAATTCAATAATGTTGAAAT+TGG + chr1.1:7361369-7361388 MS.gene33107:intron 15.0%
!! TACAAATTCAAAATTAATCA+AGG - chr1.1:7362011-7362030 None:intergenic 15.0%
!!! ATCAAAATTTGATTTTGTTT+GGG - chr1.1:7362699-7362718 None:intergenic 15.0%
!!! TAATTTTGAATTTGTATTTG+TGG + chr1.1:7362015-7362034 MS.gene33107:intron 15.0%
!! AATACTTAGGGATATAATAA+AGG - chr1.1:7361325-7361344 None:intergenic 20.0%
!! ATACTTAGGGATATAATAAA+GGG - chr1.1:7361324-7361343 None:intergenic 20.0%
!! ATACTTCTAATAAGAACAAA+TGG + chr1.1:7363045-7363064 MS.gene33107:CDS 20.0%
!! ATGAAGAATCATTAATCAAA+AGG + chr1.1:7361786-7361805 MS.gene33107:CDS 20.0%
!! ATTTGTTCTTATTAGAAGTA+TGG - chr1.1:7363046-7363065 None:intergenic 20.0%
!! CTCTTATGTCATTATTAATT+AGG + chr1.1:7362719-7362738 MS.gene33107:intron 20.0%
!!! AATGTCATTCTAAGAAATTT+AGG - chr1.1:7361499-7361518 None:intergenic 20.0%
!!! AGATGATTTTAAAACTTAGA+AGG - chr1.1:7362469-7362488 None:intergenic 20.0%
!!! ATGTCATTCTAAGAAATTTA+GGG - chr1.1:7361498-7361517 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG - chr1.1:7362150-7362169 None:intergenic 20.0%
!!! GATCAAAATTTGATTTTGTT+TGG - chr1.1:7362700-7362719 None:intergenic 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG - chr1.1:7362149-7362168 None:intergenic 20.0%
! AATATGTTTGATACTGTTAG+AGG + chr1.1:7361722-7361741 MS.gene33107:CDS 25.0%
! AGAAACAGAAGTAAAAAGAT+AGG + chr1.1:7362569-7362588 MS.gene33107:intron 25.0%
! AGTCTTTATATGAAAAGATG+TGG - chr1.1:7362320-7362339 None:intergenic 25.0%
! CAGTTAATGAAGTAAAATTG+TGG + chr1.1:7361966-7361985 MS.gene33107:intron 25.0%
! CATGTTTACCAACAATATAT+TGG - chr1.1:7362390-7362409 None:intergenic 25.0%
! TAATACACAATGTCGTATTT+AGG - chr1.1:7361241-7361260 None:intergenic 25.0%
! TACTTAGACCAATATATTGT+TGG + chr1.1:7362379-7362398 MS.gene33107:intron 25.0%
! TCTTGAATCAAAATCATGAA+TGG - chr1.1:7362672-7362691 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+CGG - chr1.1:7362262-7362281 None:intergenic 25.0%
!! ACATTGAAAATTTTATGTGC+AGG + chr1.1:7361514-7361533 MS.gene33107:intron 25.0%
!!! GTTCTTTGAATAATTTGTTG+AGG - chr1.1:7362885-7362904 None:intergenic 25.0%
AAGCGTTTCTAACAATTTGA+TGG + chr1.1:7361174-7361193 MS.gene33107:intron 30.0%
ACATTATCAAGCTTAATGGT+TGG - chr1.1:7362912-7362931 None:intergenic 30.0%
ATACTAGTTGCAACATATGA+AGG + chr1.1:7362768-7362787 MS.gene33107:CDS 30.0%
ATGTTGCAACTAGTATAGTA+GGG - chr1.1:7362764-7362783 None:intergenic 30.0%
ATTAATCAAAAGGCCATGTA+GGG + chr1.1:7361796-7361815 MS.gene33107:CDS 30.0%
TATGAAAAGATGTGGTTGAT+AGG - chr1.1:7362312-7362331 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG - chr1.1:7362765-7362784 None:intergenic 30.0%
TCTTTCTTGATTGTTGTGTT+TGG - chr1.1:7361676-7361695 None:intergenic 30.0%
TGGAACATTATCAAGCTTAA+TGG - chr1.1:7362916-7362935 None:intergenic 30.0%
TTGTGGTATAAAGTATGTGA+TGG + chr1.1:7362032-7362051 MS.gene33107:intron 30.0%
TTTGTTGAACCAAAAATTGC+TGG - chr1.1:7362950-7362969 None:intergenic 30.0%
! AATTGCTGGATAGATGATTT+TGG - chr1.1:7362936-7362955 None:intergenic 30.0%
! ATCATCTATCCAGCAATTTT+TGG + chr1.1:7362938-7362957 MS.gene33107:CDS 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG + chr1.1:7362950-7362969 MS.gene33107:CDS 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG + chr1.1:7363019-7363038 MS.gene33107:CDS 30.0%
AATTCTTCCAGAAATAGCAG+TGG - chr1.1:7363018-7363037 None:intergenic 35.0%
ACAAGAACCTTATAAGCCTT+AGG - chr1.1:7361833-7361852 None:intergenic 35.0%
AGATTACTAATCGGTGAAGT+AGG - chr1.1:7362253-7362272 None:intergenic 35.0%
ATGGAGGAAATATGGTCAAA+AGG + chr1.1:7362065-7362084 MS.gene33107:CDS 35.0%
CATTAATCAAAAGGCCATGT+AGG + chr1.1:7361795-7361814 MS.gene33107:CDS 35.0%
GGATATCAATGGAGGAAATA+TGG + chr1.1:7362057-7362076 MS.gene33107:CDS 35.0%
GGTTCCAATCTAATACCATT+AGG - chr1.1:7361220-7361239 None:intergenic 35.0%
GTAACATGAACTGAACCTAA+AGG - chr1.1:7362858-7362877 None:intergenic 35.0%
TAGTGCTTCTTCTATACTCA+AGG + chr1.1:7361057-7361076 MS.gene33107:CDS 35.0%
TTGGCCTAATGGTATTAGAT+TGG + chr1.1:7361213-7361232 MS.gene33107:intron 35.0%
! GGTATAAAGTATGTGATGGA+TGG + chr1.1:7362036-7362055 MS.gene33107:intron 35.0%
! TTGATGGTAATAACCCACTT+AGG + chr1.1:7361190-7361209 MS.gene33107:intron 35.0%
!! ATGTGATGGATGGATATCAA+TGG + chr1.1:7362046-7362065 MS.gene33107:CDS 35.0%
AACCTTATAAGCCTTAGGTG+AGG - chr1.1:7361828-7361847 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG + chr1.1:7362140-7362159 MS.gene33107:CDS 40.0%
CAAAGTGAAGAAGCTCCTTT+AGG + chr1.1:7362840-7362859 MS.gene33107:CDS 40.0%
CTAAAGGAGCTTCTTCACTT+TGG - chr1.1:7362842-7362861 None:intergenic 40.0%
CTCATAGTTCTCACACATGT+TGG - chr1.1:7361606-7361625 None:intergenic 40.0%
TAGGGATATTTCCTCACCTA+AGG + chr1.1:7361814-7361833 MS.gene33107:CDS 40.0%
TGGTAATAACCCACTTAGGT+TGG + chr1.1:7361194-7361213 MS.gene33107:intron 40.0%
TTACTAATCGGTGAAGTAGG+TGG - chr1.1:7362250-7362269 None:intergenic 40.0%
TTCCTCACCTAAGGCTTATA+AGG + chr1.1:7361823-7361842 MS.gene33107:CDS 40.0%
TTTCAGCTTTCTCATGACCA+TGG - chr1.1:7362803-7362822 None:intergenic 40.0%
! GCAAGTGCTGTAGTGAAATT+AGG - chr1.1:7362996-7363015 None:intergenic 40.0%
! TGATGGATGGATATCAATGG+AGG + chr1.1:7362049-7362068 MS.gene33107:CDS 40.0%
! TTATGTGCAGGACGAAGTTT+TGG + chr1.1:7361526-7361545 MS.gene33107:intron 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG - chr1.1:7362105-7362124 None:intergenic 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG - chr1.1:7362104-7362123 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG - chr1.1:7362141-7362160 None:intergenic 40.0%
ACCATTAGGCCAACCTAAGT+GGG - chr1.1:7361206-7361225 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG + chr1.1:7362103-7362122 MS.gene33107:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1.1:7362111-7362130 None:intergenic 45.0%
GGTGAGGAAATATCCCTACA+TGG - chr1.1:7361812-7361831 None:intergenic 45.0%
TACCATTAGGCCAACCTAAG+TGG - chr1.1:7361207-7361226 None:intergenic 45.0%
! TATGAAGGAGAGCACAACCA+TGG + chr1.1:7362783-7362802 MS.gene33107:CDS 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG - chr1.1:7362106-7362125 None:intergenic 45.0%
!! GTCTCAGTTCTGAGAACAAG+AGG + chr1.1:7361564-7361583 MS.gene33107:CDS 45.0%
!! ACCCACTTAGGTTGGCCTAA+TGG + chr1.1:7361202-7361221 MS.gene33107:intron 50.0%
!! GCACTTGCCACTGCTATTTC+TGG + chr1.1:7363008-7363027 MS.gene33107:CDS 50.0%
AACTGGGCAGCTTGGAGCAT+AGG - chr1.1:7362133-7362152 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7361016 7363070 7361016 ID=MS.gene33107
chr1.1 mRNA 7361016 7363070 7361016 ID=MS.gene33107.t1;Parent=MS.gene33107
chr1.1 exon 7361016 7361078 7361016 ID=MS.gene33107.t1.exon1;Parent=MS.gene33107.t1
chr1.1 CDS 7361016 7361078 7361016 ID=cds.MS.gene33107.t1;Parent=MS.gene33107.t1
chr1.1 exon 7361536 7361880 7361536 ID=MS.gene33107.t1.exon2;Parent=MS.gene33107.t1
chr1.1 CDS 7361536 7361880 7361536 ID=cds.MS.gene33107.t1;Parent=MS.gene33107.t1
chr1.1 exon 7362045 7362161 7362045 ID=MS.gene33107.t1.exon3;Parent=MS.gene33107.t1
chr1.1 CDS 7362045 7362161 7362045 ID=cds.MS.gene33107.t1;Parent=MS.gene33107.t1
chr1.1 exon 7362741 7363070 7362741 ID=MS.gene33107.t1.exon4;Parent=MS.gene33107.t1
chr1.1 CDS 7362741 7363070 7362741 ID=cds.MS.gene33107.t1;Parent=MS.gene33107.t1
Gene Sequence

>MS.gene33107

ATGGAATCAACATGCGTGGATACTTCACTCAATCTTAACGTTAGTGCTTCTTCTATACTCAAGGTTCGTATACATATACAGTTAAAGAGTTAAATTTTCATATTTTTAAACATCAAAATCAATCACGCGTGACTTTAAAAATAGTTATCATAAAAGTCAAGCGTTTCTAACAATTTGATGGTAATAACCCACTTAGGTTGGCCTAATGGTATTAGATTGGAACCTAAATACGACATTGTGTATTATATATATCTACAAAAATTGAATTAACGATGAAAATTTACTAATGAAAGATTTAAAATCTACCCTTTATTATATCCCTAAGTATTGTATATTAATTTCACTAAAAATGGTAATTCAATAATGTTGAAATTGGATACTAATTTCATTCTAATTATTTTTATTTTTGTTGATAATTTAACTGTTTTTACTAGTAGTATTTGCATATATATGTAATAAATTTTAGTTATTTCATGTGTCCCTAAATTTCTTAGAATGACATTGAAAATTTTATGTGCAGGACGAAGTTTTGGTTGAAGAGTTACATCGTCTCAGTTCTGAGAACAAGAGGCTAAATGAAACATTGACCAACATGTGTGAGAACTATGAGACTATGCAAAAGCAATTGAATCAATTGATGAATCAAAATTTTGAACACCAAACACAACAATCAAGAAAGAGAAAAGCTGAGAGTGAAAGTTGCATCAATATGTTTGATACTGTTAGAGGCATTAATATTATCAATAATAATGAGTGCAGCACTGTTACTGATGAAGAATCATTAATCAAAAGGCCATGTAGGGATATTTCCTCACCTAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTAGTAAGTTAATTTCTTTATTATTTTGATGTATAAATTTAATTTTTCTAGCAACTTCAATAGTGTGTGTTTAGTTGTGTCTATATTACAGTTAATGAAGTAAAATTGTGGACTTAATCACAAGTACTAACCTTGATTAATTTTGAATTTGTATTTGTGGTATAAAGTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTTACTAGAGATAACCCCTCTCCTAGAGCTTACTTTAGGTGCTCCTATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTAATAATTCAAAATTATATTAGCAAACAACACTTTTCTCTACAACAAACATGTGTATTCTTAACATAATCTTGATGTGAAGTGTCCACCTACTTCACCGATTAGTAATCTCTATCGAAAAATATTACAATAATTTAGTAGGTTTTTCCTATCAACCACATCTTTTCATATAAAGACTCGAATATGAGACTTTGTTTAAGATATTTAAGTTCAGTTCTACTTAGACCAATATATTGTTGGTAAACATGTTTTTATAAATAAAAAAATAAATCATGTTTGATTTGAAAAAAATAATTCGGAGTTTCCTTCTAAGTTTTAAAATCATCTTATTTTTTCACTTTATTTTTTCTTTTCAAAGATTTGAACAAGAAAAATGAAAGTAATTAATGTACAAATATTTAAAAATAAGAAACAGAAGTAAAAAGATAGGACAATTTTTCAATCAAAGTGAAAACGATAAATAAAATAGAAAACATTTTCTTAAAGTAAACAAATGCTAAAATTTTGCCATTCATGATTTTGATTCAAGAATCACCCAAACAAAATCAAATTTTGATCTCTTATGTCATTATTAATTAGGTGCAAAAAAGTTTAGAAGACCCTACTATACTAGTTGCAACATATGAAGGAGAGCACAACCATGGTCATGAGAAAGCTGAAATATCAATGATATCAAGCCAAAGTGAAGAAGCTCCTTTAGGTTCAGTTCATGTTACTTCACCTCAACAAATTATTCAAAGAACATGTCCAACCATTAAGCTTGATAATGTTCCAAAATCATCTATCCAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAATGATCCTAATTTCACTACAGCACTTGCCACTGCTATTTCTGGAAGAATTTTGGACCATACTTCTAATAAGAACAAATGGTGA
Protein sequence

>MS.gene33107.t1

MESTCVDTSLNLNVSASSILKDEVLVEELHRLSSENKRLNETLTNMCENYETMQKQLNQLMNQNFEHQTQQSRKRKAESESCINMFDTVRGINIINNNECSTVTDEESLIKRPCRDISSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSYAPSCPVKKKVQKSLEDPTILVATYEGEHNHGHEKAEISMISSQSEEAPLGSVHVTSPQQIIQRTCPTIKLDNVPKSSIQQFLVQQMATSLTNDPNFTTALATAISGRILDHTSNKNKW