AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33115

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33115.t1 MTR_1g014070 97.731 617 14 0 1 617 1 617 0.0 1237
MS.gene33115.t1 MTR_5g015790 50.774 646 273 13 1 617 1 630 0.0 593
MS.gene33115.t1 MTR_1g106430 48.523 643 287 15 1 617 1 625 0.0 551
MS.gene33115.t1 MTR_5g032780 46.692 529 241 10 1 493 1 524 4.28e-152 452
MS.gene33115.t1 MTR_8g069330 41.129 620 303 13 1 582 1 596 2.89e-136 410
MS.gene33115.t1 MTR_4g134210 39.046 566 298 11 1 546 1 539 3.32e-134 405
MS.gene33115.t1 MTR_2g009340 38.262 541 273 9 6 492 19 552 5.48e-123 379
MS.gene33115.t1 MTR_4g093850 38.964 521 265 9 22 499 39 549 1.12e-122 378
MS.gene33115.t1 MTR_2g027410 36.086 557 314 9 1 548 1 524 8.45e-119 365
MS.gene33115.t1 MTR_2g018750 40.748 508 279 11 1 492 1 502 2.86e-116 359
MS.gene33115.t1 MTR_1g064360 37.984 516 271 11 1 496 1 487 6.05e-104 326
MS.gene33115.t1 MTR_5g016060 37.072 526 296 14 23 535 36 539 2.96e-102 323
MS.gene33115.t1 MTR_2g027410 35.950 484 269 8 74 548 1 452 4.90e-101 317
MS.gene33115.t1 MTR_8g090220 32.967 546 272 11 21 517 46 546 1.19e-100 320
MS.gene33115.t1 MTR_8g090220 34.064 502 253 9 21 484 46 507 2.71e-100 315
MS.gene33115.t1 MTR_1g094850 39.258 512 285 14 1 496 1 502 3.45e-98 312
MS.gene33115.t1 MTR_2g084595 34.927 481 289 6 25 487 21 495 1.50e-97 311
MS.gene33115.t1 MTR_8g078900 32.843 612 358 14 22 585 15 621 5.01e-97 311
MS.gene33115.t1 MTR_4g022330 36.800 500 290 9 18 506 25 509 5.47e-97 310
MS.gene33115.t1 MTR_4g093850 36.383 459 242 8 22 437 39 490 2.08e-96 305
MS.gene33115.t1 MTR_4g095430 34.991 543 313 13 24 546 10 532 2.19e-95 305
MS.gene33115.t1 MTR_8g078900 36.008 486 274 10 38 488 1 484 8.23e-93 299
MS.gene33115.t1 MTR_7g073980 32.958 622 360 15 19 609 25 620 3.05e-92 298
MS.gene33115.t1 MTR_2g048390 36.980 457 263 9 1 437 1 452 2.33e-90 287
MS.gene33115.t1 MTR_1g088885 36.076 474 280 7 25 488 34 494 1.55e-89 290
MS.gene33115.t1 MTR_8g078900 37.241 435 256 9 69 488 42 474 7.54e-87 283
MS.gene33115.t1 MTR_7g108290 34.490 490 294 10 25 502 34 508 7.68e-82 271
MS.gene33115.t1 MTR_3g062540 33.402 488 276 9 12 488 11 460 6.54e-80 263
MS.gene33115.t1 MTR_1g082690 31.677 483 274 8 28 501 59 494 5.58e-79 260
MS.gene33115.t1 MTR_2g084595 32.483 431 267 6 25 437 21 445 1.08e-75 248
MS.gene33115.t1 MTR_5g016060 36.180 445 249 14 104 535 3 425 1.30e-74 248
MS.gene33115.t1 MTR_5g075640 29.821 503 297 10 12 495 12 477 6.44e-73 245
MS.gene33115.t1 MTR_8g078900 33.038 451 265 10 22 437 15 463 2.45e-72 240
MS.gene33115.t1 MTR_3g062540 32.892 453 257 8 47 488 2 418 1.02e-69 235
MS.gene33115.t1 MTR_5g075640 29.487 468 276 9 47 495 2 434 1.90e-63 218
MS.gene33115.t1 MTR_8g078900 34.375 384 235 9 69 437 42 423 1.05e-62 213
MS.gene33115.t1 MTR_2g102730 40.484 289 140 7 213 488 24 293 1.40e-56 197
MS.gene33115.t1 MTR_4g011530 39.792 289 140 8 213 488 46 313 3.47e-53 189
MS.gene33115.t1 MTR_4g074190 26.682 446 281 11 69 492 3 424 9.91e-39 149
MS.gene33115.t1 MTR_4g074190 26.682 446 281 11 69 492 49 470 1.31e-38 150
MS.gene33115.t1 MTR_1g035720 25.933 509 312 16 30 508 6 479 1.39e-38 149
MS.gene33115.t1 MTR_4g045767 25.420 476 319 10 36 505 14 459 1.26e-37 147
MS.gene33115.t1 MTR_4g074190 25.641 390 246 10 69 437 49 415 1.04e-28 119
MS.gene33115.t1 MTR_1g105870 30.882 204 122 3 31 232 35 221 2.50e-25 106
MS.gene33115.t1 MTR_2g010890 25.385 390 251 9 93 474 1 358 1.03e-22 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33115.t1 AT4G31820 57.966 590 187 13 1 581 1 538 0.0 651
MS.gene33115.t1 AT4G31820 56.797 537 171 13 54 581 1 485 0.0 572
MS.gene33115.t1 AT2G14820 52.906 499 223 4 1 493 1 493 1.16e-179 523
MS.gene33115.t1 AT2G14820 52.906 499 223 4 1 493 1 493 1.16e-179 523
MS.gene33115.t1 AT5G67440 46.942 605 272 11 1 597 1 564 4.12e-175 509
MS.gene33115.t1 AT5G67440 46.942 605 272 11 1 597 1 564 4.12e-175 509
MS.gene33115.t1 AT4G37590 46.387 595 248 16 1 573 1 546 9.66e-168 491
MS.gene33115.t1 AT2G23050 48.406 502 211 9 1 497 1 459 1.37e-157 461
MS.gene33115.t1 AT5G67440 45.213 564 260 11 42 597 5 527 2.25e-150 445
MS.gene33115.t1 AT1G67900 45.333 525 242 9 1 492 1 513 3.35e-142 427
MS.gene33115.t1 AT1G67900 45.333 525 242 9 1 492 1 513 3.35e-142 427
MS.gene33115.t1 AT1G67900 45.333 525 242 9 1 492 1 513 3.35e-142 427
MS.gene33115.t1 AT1G67900 45.333 525 242 9 1 492 1 513 3.35e-142 427
MS.gene33115.t1 AT1G67900 45.333 525 242 9 1 492 1 513 3.35e-142 427
MS.gene33115.t1 AT1G67900 45.333 525 242 9 1 492 1 513 3.35e-142 427
MS.gene33115.t1 AT3G26490 41.426 519 265 12 1 490 1 509 2.71e-124 379
MS.gene33115.t1 AT3G26490 41.426 519 265 12 1 490 1 509 2.71e-124 379
MS.gene33115.t1 AT3G26490 41.426 519 265 12 1 490 1 509 2.71e-124 379
MS.gene33115.t1 AT5G47800 38.067 507 286 6 1 499 1 487 5.89e-123 375
MS.gene33115.t1 AT5G47800 38.067 507 286 6 1 499 1 487 5.89e-123 375
MS.gene33115.t1 AT5G47800 38.067 507 286 6 1 499 1 487 5.89e-123 375
MS.gene33115.t1 AT5G47800 38.067 507 286 6 1 499 114 600 1.95e-121 375
MS.gene33115.t1 AT5G03250 39.038 520 283 11 1 496 1 510 4.40e-115 356
MS.gene33115.t1 AT2G23050 43.523 386 175 7 112 497 1 343 6.47e-105 322
MS.gene33115.t1 AT1G30440 35.922 515 304 8 1 492 1 512 8.67e-104 329
MS.gene33115.t1 AT3G26490 40.558 466 238 12 1 437 1 456 1.85e-102 320
MS.gene33115.t1 AT5G13600 37.500 536 294 15 1 512 1 519 4.17e-101 320
MS.gene33115.t1 AT5G48800 38.316 475 267 7 22 492 36 488 5.08e-97 310
MS.gene33115.t1 AT5G67385 36.786 473 271 9 24 488 22 474 1.44e-96 308
MS.gene33115.t1 AT3G44820 33.603 494 297 8 22 487 18 508 4.14e-91 295
MS.gene33115.t1 AT1G03010 35.863 527 288 14 12 511 18 521 1.79e-89 290
MS.gene33115.t1 AT5G66560 34.615 546 276 12 22 500 14 545 3.25e-89 290
MS.gene33115.t1 AT1G03010 35.938 512 280 13 25 511 7 495 7.33e-89 288
MS.gene33115.t1 AT1G03010 35.938 512 280 13 25 511 34 522 1.25e-88 288
MS.gene33115.t1 AT3G08660 33.450 571 313 12 19 567 26 551 4.49e-88 285
MS.gene33115.t1 AT5G10250 33.925 507 250 11 22 488 45 506 7.27e-88 286
MS.gene33115.t1 AT2G47860 37.344 482 262 11 25 488 35 494 2.45e-87 285
MS.gene33115.t1 AT3G08570 34.146 574 332 14 19 567 26 578 1.48e-86 282
MS.gene33115.t1 AT5G66560 34.528 530 266 11 38 500 1 516 5.04e-86 281
MS.gene33115.t1 AT5G67385 36.526 449 257 9 48 488 1 429 8.11e-86 278
MS.gene33115.t1 AT5G67385 36.526 449 257 9 48 488 1 429 8.11e-86 278
MS.gene33115.t1 AT5G67385 36.526 449 257 9 48 488 1 429 8.11e-86 278
MS.gene33115.t1 AT5G67385 36.526 449 257 9 48 488 1 429 8.11e-86 278
MS.gene33115.t1 AT5G10250 33.468 496 252 10 22 488 45 491 5.46e-85 278
MS.gene33115.t1 AT5G66560 37.363 455 248 10 69 500 66 506 3.02e-83 274
MS.gene33115.t1 AT3G50840 35.000 480 268 8 22 488 11 459 7.78e-83 271
MS.gene33115.t1 AT2G47860 35.644 505 262 12 25 488 35 517 2.71e-82 272
MS.gene33115.t1 AT2G30520 32.803 503 278 10 4 488 9 469 1.41e-80 266
MS.gene33115.t1 AT3G08660 33.080 526 286 11 64 567 10 491 2.12e-77 255
MS.gene33115.t1 AT3G49970 36.180 445 220 11 38 473 5 394 4.96e-76 251
MS.gene33115.t1 AT3G49970 36.180 445 220 11 38 473 5 394 4.96e-76 251
MS.gene33115.t1 AT3G50840 34.361 454 254 8 48 488 1 423 2.79e-73 245
MS.gene33115.t1 AT3G50840 34.361 454 254 8 48 488 1 423 2.79e-73 245
MS.gene33115.t1 AT5G03250 36.609 407 227 9 112 496 1 398 4.44e-73 243
MS.gene33115.t1 AT2G30520 33.043 460 250 11 47 488 2 421 2.14e-71 240
MS.gene33115.t1 AT2G30520 33.043 460 250 11 47 488 2 421 2.14e-71 240
MS.gene33115.t1 AT3G08660 34.434 424 239 10 19 437 26 415 1.63e-65 221
MS.gene33115.t1 AT2G47860 35.499 431 238 11 25 437 35 443 2.77e-65 221
MS.gene33115.t1 AT5G66560 31.875 480 249 10 22 437 14 479 2.57e-64 219
MS.gene33115.t1 AT5G64330 39.773 264 143 3 7 256 33 294 2.49e-62 218
MS.gene33115.t1 AT5G64330 37.959 245 132 5 271 499 373 613 3.70e-43 165
MS.gene33115.t1 AT5G64330 39.773 264 143 3 7 256 33 294 7.40e-62 219
MS.gene33115.t1 AT5G64330 37.959 245 132 5 271 499 373 613 3.57e-43 166
MS.gene33115.t1 AT2G47860 33.700 454 238 12 25 437 35 466 2.08e-60 209
MS.gene33115.t1 AT2G47860 35.443 395 218 10 112 488 1 376 2.69e-56 199
MS.gene33115.t1 AT2G47860 35.443 395 218 10 112 488 1 376 2.69e-56 199
MS.gene33115.t1 AT1G52770 37.288 295 147 6 213 488 28 303 1.92e-54 192
MS.gene33115.t1 AT5G64330 40.693 231 122 2 40 256 6 235 1.58e-53 193
MS.gene33115.t1 AT5G64330 37.959 245 132 5 271 499 314 554 1.36e-43 165
MS.gene33115.t1 AT5G48130 25.407 492 274 13 27 487 39 468 1.28e-52 191
MS.gene33115.t1 AT3G15570 34.783 299 153 7 213 488 29 308 3.41e-47 172
MS.gene33115.t1 AT3G19850 27.460 437 275 8 69 487 52 464 1.15e-46 173
MS.gene33115.t1 AT5G17580 27.484 473 305 10 23 488 16 457 1.19e-41 159
MS.gene33115.t1 AT5G17580 27.484 473 305 10 23 488 1 442 1.68e-41 158
MS.gene33115.t1 AT1G50280 27.804 428 277 8 69 482 18 427 1.13e-39 152
MS.gene33115.t1 AT1G50280 27.804 428 277 8 69 482 51 460 1.39e-39 152
MS.gene33115.t1 AT3G03510 29.762 420 225 15 77 488 4 361 1.30e-36 142
MS.gene33115.t1 AT3G22104 24.000 450 287 11 36 473 14 420 6.05e-32 130
MS.gene33115.t1 AT3G22104 23.117 385 243 9 99 473 4 345 3.11e-22 100
MS.gene33115.t1 AT3G22104 23.117 385 243 9 99 473 4 345 3.11e-22 100
MS.gene33115.t1 AT3G22104 23.117 385 243 9 99 473 4 345 3.11e-22 100

Find 125 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCGTCTCCATTTATT+AGG 0.216595 1.1:+7463912 None:intergenic
TCTGAGGATCTAAAGATAAT+TGG 0.223450 1.1:-7465320 MS.gene33115:CDS
CAAAAGACATTCTATCTCTT+AGG 0.246837 1.1:-7463597 None:intergenic
CCTCCACATGCCCTAATAAA+TGG 0.253864 1.1:-7463923 MS.gene33115:CDS
GATATGAAAGATAAAGTATT+TGG 0.280957 1.1:-7464675 MS.gene33115:CDS
TGTCAAGGATTTACTGATTC+CGG 0.288586 1.1:-7464799 MS.gene33115:CDS
CTGATTCCGGCTAGGTCTCC+TGG 0.293524 1.1:-7464786 MS.gene33115:CDS
AATGATAACGGTGAAATCTA+AGG 0.298241 1.1:-7465096 MS.gene33115:CDS
TGCACATATTTCAAAGGCCT+TGG 0.314739 1.1:+7465547 None:intergenic
GGAGAATATTTGACAAGTTA+TGG 0.336159 1.1:-7463736 MS.gene33115:CDS
TACTACTTATGATATTGATT+TGG 0.339422 1.1:-7464760 MS.gene33115:CDS
AAAATGAAGTTTATGAAGTT+GGG 0.342765 1.1:-7468006 MS.gene33115:CDS
CTGTACAAACCGTCATGATT+TGG 0.348424 1.1:+7464513 None:intergenic
ACTATTTAAAGTGGCCATAC+TGG 0.349780 1.1:-7464889 MS.gene33115:CDS
CTTGGAGATACAAAATCTTC+TGG 0.359835 1.1:-7463635 MS.gene33115:CDS
AATAGGAGTTCAGAGGCTTC+AGG 0.361947 1.1:-7463686 MS.gene33115:CDS
CCATCAGATTGAAGTGCATC+AGG 0.365409 1.1:+7467976 None:intergenic
TTCCTCGTCTCCATTTATTA+GGG 0.365614 1.1:+7463913 None:intergenic
GCTGTTCATCAATTCTTCTC+TGG 0.372100 1.1:+7464848 None:intergenic
ATGACAGAGGATATTGATAA+AGG 0.389164 1.1:-7465446 MS.gene33115:CDS
GCCTGATTCTGTTGATGCAT+TGG 0.391893 1.1:-7465015 MS.gene33115:CDS
ACCAATGCATCAACAGAATC+AGG 0.394719 1.1:+7465014 None:intergenic
AATCTGATGGCAAATTTGTC+AGG 0.409140 1.1:-7467963 MS.gene33115:intron
GTTTCGTAAGAGTGTGAGAT+TGG 0.412767 1.1:-7463816 MS.gene33115:CDS
CTGAGGATCTAAAGATAATT+GGG 0.417356 1.1:-7465319 MS.gene33115:CDS
TGATTTGGTCTAGCAAAATC+TGG 0.421555 1.1:+7464528 None:intergenic
TTATGGAATGTTGGTAGTAA+AGG 0.422184 1.1:-7463719 MS.gene33115:CDS
ACAGATATTATCATAGCTAT+TGG 0.425143 1.1:-7465781 MS.gene33115:CDS
TATGGAATGTTGGTAGTAAA+GGG 0.426699 1.1:-7463718 MS.gene33115:CDS
TAAGACCAAGTGATGTTTGC+CGG 0.434445 1.1:+7465257 None:intergenic
TTCTTCTCTGGATGATTCAT+CGG 0.435084 1.1:+7464860 None:intergenic
CATCAAGTATCTTTCGTAGC+TGG 0.435226 1.1:-7465391 MS.gene33115:CDS
CGAGGAATGCGAGAAAACTC+TGG 0.444156 1.1:-7463897 MS.gene33115:CDS
GCACATATTTCAAAGGCCTT+GGG 0.445735 1.1:+7465548 None:intergenic
TAATTCAGATGAAATTTACT+TGG 0.448094 1.1:-7465588 MS.gene33115:CDS
ACGACTTGTTTGTCTGTTGA+GGG 0.448196 1.1:+7463859 None:intergenic
TTCATCGGCTTCAACCAGTA+TGG 0.453351 1.1:+7464875 None:intergenic
GCATGCAGTTGTTGCCGTCT+CGG 0.453505 1.1:-7463763 MS.gene33115:CDS
AAGTTGGTTGATAGTTATCT+TGG 0.460673 1.1:-7464612 MS.gene33115:CDS
CTTGCTGAAACTATTTAAAG+TGG 0.463625 1.1:-7464898 MS.gene33115:CDS
TCCGAAGGATTGGTGGGTTG+AGG 0.463763 1.1:-7465156 MS.gene33115:CDS
AAAAGACATTCTATCTCTTA+GGG 0.466446 1.1:-7463596 None:intergenic
TTTGACAAGTTATGGAATGT+TGG 0.466928 1.1:-7463728 MS.gene33115:CDS
TCCTCAACCCACCAATCCTT+CGG 0.471360 1.1:+7465155 None:intergenic
TACGAAAGATACTTGATGTA+AGG 0.472293 1.1:+7465396 None:intergenic
AACGACTTGTTTGTCTGTTG+AGG 0.472812 1.1:+7463858 None:intergenic
ATAGGAGTTCAGAGGCTTCA+GGG 0.474284 1.1:-7463685 MS.gene33115:CDS
GTTAGCAAATGCTCGGGCAC+TGG 0.475056 1.1:+7463958 None:intergenic
TTGAGTCTGTTCCGAAGGAT+TGG 0.477314 1.1:-7465166 MS.gene33115:CDS
CTGCTAAATCTCTTCTCCCT+TGG 0.477644 1.1:-7465343 MS.gene33115:CDS
GTAAAGGGCATGGAGAGAAT+AGG 0.477954 1.1:-7463703 MS.gene33115:CDS
TGTTTATTGCCGTGTGATAA+CGG 0.480390 1.1:-7464942 MS.gene33115:CDS
GAGCAATCGCTTACAGAAGT+TGG 0.481628 1.1:-7465630 MS.gene33115:CDS
TCAAAGGCCTTGGGTCCACC+AGG 0.488895 1.1:+7465557 None:intergenic
AGTCCAACTTCTGTAGTCCT+TGG 0.489120 1.1:-7463653 MS.gene33115:CDS
TTATAAACGCGTAATGATAA+CGG 0.489211 1.1:-7465108 MS.gene33115:CDS
TGCATGGAGGAACAAATCTC+TGG 0.493898 1.1:-7464979 MS.gene33115:CDS
TGAAAACCTATGCTGTTAGA+TGG 0.494881 1.1:-7465040 MS.gene33115:CDS
ATTTACTTGGACGATTTCCC+TGG 0.500638 1.1:-7465575 MS.gene33115:CDS
AGAATGGACGGTGTTGTGAT+TGG 0.502763 1.1:-7465071 MS.gene33115:CDS
TGATTCCGGCTAGGTCTCCT+GGG 0.505713 1.1:-7464785 MS.gene33115:CDS
GAAATTGACTGCTGATGCAT+CGG 0.507619 1.1:-7464059 MS.gene33115:CDS
AGCCATCGATATCTACTTGA+AGG 0.509362 1.1:-7464490 MS.gene33115:intron
TCTCCAAGGACTACAGAAGT+TGG 0.509793 1.1:+7463650 None:intergenic
AAACTAGAGAGGCTAAGATT+AGG 0.511940 1.1:+7464573 None:intergenic
AGTCTGTTCCGAAGGATTGG+TGG 0.513817 1.1:-7465163 MS.gene33115:CDS
ATCTTTAGATCCTCAGACCA+AGG 0.516375 1.1:+7465326 None:intergenic
TCCACTTCGAGTTGTAGTGC+AGG 0.516877 1.1:-7464011 MS.gene33115:CDS
TGGTTTCTGATGCTCATGCA+TGG 0.521841 1.1:-7464995 MS.gene33115:CDS
TTGTTTGTCTGTTGAGGGAA+TGG 0.522335 1.1:+7463864 None:intergenic
GGTGAAATCTAAGGGAAGAA+TGG 0.523387 1.1:-7465087 MS.gene33115:CDS
CTTACAGAAGTTGGTGTCAA+AGG 0.524081 1.1:-7465621 MS.gene33115:CDS
TTGATCCGGCAAACATCACT+TGG 0.527188 1.1:-7465262 MS.gene33115:CDS
CGATTTCCCTGGTGGACCCA+AGG 0.529641 1.1:-7465564 MS.gene33115:CDS
CGCATGCTGCACAGAACGAA+CGG 0.533403 1.1:-7464036 MS.gene33115:CDS
ATCTCTTCTCCCTTGGTCTG+AGG 0.535395 1.1:-7465336 MS.gene33115:CDS
AGTTGTTGCCGTCTCGGTCG+AGG 0.536571 1.1:-7463757 MS.gene33115:CDS
TTGCCGTGTGATAACGGTGT+TGG 0.537879 1.1:-7464936 MS.gene33115:CDS
ACCTGCACTACAACTCGAAG+TGG 0.539338 1.1:+7464010 None:intergenic
CCTGATGCACTTCAATCTGA+TGG 0.542206 1.1:-7467976 MS.gene33115:CDS
GAACTTTGCACATATTTCAA+AGG 0.543529 1.1:+7465541 None:intergenic
ATATGTGCAAAGTTCTGCTA+TGG 0.544022 1.1:-7465533 MS.gene33115:CDS
TCTGAAAAGAAGAACATATG+TGG 0.548360 1.1:-7464097 MS.gene33115:CDS
GATTGCTCTTTGACAGTAGA+GGG 0.548395 1.1:+7465645 None:intergenic
TACTTGGACGATTTCCCTGG+TGG 0.549505 1.1:-7465572 MS.gene33115:CDS
GAAAATTGAGTCTGTTCCGA+AGG 0.556432 1.1:-7465171 MS.gene33115:CDS
GATATTGAATCTCGGCAAGT+TGG 0.559092 1.1:-7464628 MS.gene33115:CDS
ATGATAACGGTGAAATCTAA+GGG 0.563530 1.1:-7465095 MS.gene33115:CDS
GTCTGTTCCGAAGGATTGGT+GGG 0.564671 1.1:-7465162 MS.gene33115:CDS
TCTCCATTTATTAGGGCATG+TGG 0.566345 1.1:+7463920 None:intergenic
GGTTGAGGATATATGTGAGC+TGG 0.567054 1.1:-7465141 MS.gene33115:CDS
CAATATCCTCTGTCATCTCA+AGG 0.567324 1.1:+7465453 None:intergenic
ATTGCATGAAGCTTCTGTCA+AGG 0.573895 1.1:-7464814 MS.gene33115:CDS
AGGATTTACTGATTCCGGCT+AGG 0.574506 1.1:-7464794 MS.gene33115:CDS
AAGTATCTTTCGTAGCTGGA+AGG 0.582873 1.1:-7465387 MS.gene33115:CDS
GTGGACTGTTAGCAAATGCT+CGG 0.585051 1.1:+7463951 None:intergenic
AATATTCTCCTCGACCGAGA+CGG 0.585861 1.1:+7463749 None:intergenic
TAGTTTCAGCAAGAAACTAC+AGG 0.589035 1.1:+7464908 None:intergenic
CGATTGCTCTTTGACAGTAG+AGG 0.595990 1.1:+7465644 None:intergenic
GAGGAATGCGAGAAAACTCT+GGG 0.599575 1.1:-7463896 MS.gene33115:CDS
TCTTTAGATCCTCAGACCAA+GGG 0.600214 1.1:+7465327 None:intergenic
GTAATCCCAGGAGACCTAGC+CGG 0.600747 1.1:+7464780 None:intergenic
CCATTTATTAGGGCATGTGG+AGG 0.601063 1.1:+7463923 None:intergenic
TCTGAATGCTTACAATGTTG+TGG 0.606892 1.1:-7465498 MS.gene33115:CDS
TGGACTGTTAGCAAATGCTC+GGG 0.608053 1.1:+7463952 None:intergenic
AATGTTGGTAGTAAAGGGCA+TGG 0.608411 1.1:-7463713 MS.gene33115:CDS
AATAGGGCGATATTGAATCT+CGG 0.610706 1.1:-7464636 MS.gene33115:CDS
TACCTTCAAGTAGATATCGA+TGG 0.617470 1.1:+7464488 None:intergenic
ATATCATAAGTAGTAATCCC+AGG 0.618972 1.1:+7464768 None:intergenic
AGGCAACCATCTAACAGCAT+AGG 0.619442 1.1:+7465034 None:intergenic
ACAAATCAACAAAACTAGAG+AGG 0.619836 1.1:+7464562 None:intergenic
TGGAGAGAATAGGAGTTCAG+AGG 0.626635 1.1:-7463693 MS.gene33115:CDS
CAACCAACACCGTTATCACA+CGG 0.627146 1.1:+7464933 None:intergenic
TTTGCTAGACCAAATCATGA+CGG 0.635280 1.1:-7464522 MS.gene33115:CDS
AAATCTAAGGGAAGAATGGA+CGG 0.638803 1.1:-7465083 MS.gene33115:CDS
TGTGGCTGCTCGATGTGCAG+CGG 0.654801 1.1:-7465480 MS.gene33115:CDS
ACAGGTCGATAAAGTCGTTG+AGG 0.658797 1.1:-7465213 MS.gene33115:CDS
AGGGCATGTGGAGGATTGTG+TGG 0.662550 1.1:+7463932 None:intergenic
TGTAAAGTTTGACCTTCACA+AGG 0.678188 1.1:-7465755 MS.gene33115:intron
TGCCCTAATAAATGGAGACG+AGG 0.682274 1.1:-7463915 MS.gene33115:CDS
CAAAGGCCTTGGGTCCACCA+GGG 0.683009 1.1:+7465558 None:intergenic
GGACGGTGTTGTGATTGGTG+AGG 0.691521 1.1:-7465066 MS.gene33115:CDS
TTACAACCGAAAATTAACAC+AGG 0.700722 1.1:-7465231 MS.gene33115:CDS
GGAGTACCTTGAGATGACAG+AGG 0.738740 1.1:-7465459 MS.gene33115:CDS
TTTCTGATGCTCATGCATGG+AGG 0.746693 1.1:-7464992 MS.gene33115:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTATTTCATAAATATTA+TGG - chr1.1:7464822-7464841 MS.gene33115:CDS 10.0%
!! TATTAACATAAAAAAATGAT+TGG + chr1.1:7465177-7465196 None:intergenic 10.0%
!! AATTAAGTTAAAAAATCAAG+AGG - chr1.1:7464942-7464961 MS.gene33115:CDS 15.0%
!! ATGTTATTATTAACTGTAAA+GGG - chr1.1:7464504-7464523 MS.gene33115:CDS 15.0%
!! ATTAAGTTAAAAAATCAAGA+GGG - chr1.1:7464943-7464962 MS.gene33115:CDS 15.0%
!! GTAAAACTAATGATATATAT+AGG + chr1.1:7464739-7464758 None:intergenic 15.0%
!! TATGTTATTATTAACTGTAA+AGG - chr1.1:7464503-7464522 MS.gene33115:CDS 15.0%
!! TATTTCATAAATATTATGGT+TGG - chr1.1:7464826-7464845 MS.gene33115:CDS 15.0%
!! TGATTAATATCAACAATTAT+TGG + chr1.1:7465039-7465058 None:intergenic 15.0%
!!! AATATAAACTGAAATAGTTT+TGG - chr1.1:7463861-7463880 MS.gene33115:CDS 15.0%
!!! AGTTTTATTAAAAAATGCAA+TGG - chr1.1:7465544-7465563 MS.gene33115:CDS 15.0%
!!! CTTGATTTTTTAACTTAATT+TGG + chr1.1:7464942-7464961 None:intergenic 15.0%
!!! TGCAACTATTTTATTAAATA+AGG + chr1.1:7465232-7465251 None:intergenic 15.0%
!! ATATATTGAAACTATTTCAG+TGG + chr1.1:7464453-7464472 None:intergenic 20.0%
!! GTAGTGTACTATTAAATTAT+TGG - chr1.1:7464905-7464924 MS.gene33115:CDS 20.0%
!! TAATTCAGATGAAATTTACT+TGG - chr1.1:7466013-7466032 MS.gene33115:intron 20.0%
!! TTAATATCAACAATTATTGG+TGG + chr1.1:7465036-7465055 None:intergenic 20.0%
!!! AATGTTTTAAAAACCAAACA+TGG - chr1.1:7464046-7464065 MS.gene33115:CDS 20.0%
!!! ACTTTAAAAAGCTAGTATTT+TGG - chr1.1:7465065-7465084 MS.gene33115:CDS 20.0%
!!! GATATGAAAGATAAAGTATT+TGG - chr1.1:7466926-7466945 MS.gene33115:intron 20.0%
!!! GATTTTTTAACTTAATTTGG+AGG + chr1.1:7464939-7464958 None:intergenic 20.0%
!!! TACTACTTATGATATTGATT+TGG - chr1.1:7466841-7466860 MS.gene33115:intron 20.0%
!!! TATTACATTTTTCTATCACT+AGG + chr1.1:7465525-7465544 None:intergenic 20.0%
!!! TATTTGGTGAATCTATTTTA+GGG - chr1.1:7466942-7466961 MS.gene33115:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr1.1:7464299-7464318 MS.gene33115:intron 20.0%
!!! TTATTTTCTCGAATTATTTC+AGG + chr1.1:7467246-7467265 None:intergenic 20.0%
! AAATAGTTGCAAGTATATGA+TGG - chr1.1:7465241-7465260 MS.gene33115:CDS 25.0%
! AATTCATTTCCAATTTATGC+AGG - chr1.1:7465776-7465795 MS.gene33115:CDS 25.0%
! ACAGATATTATCATAGCTAT+TGG - chr1.1:7465820-7465839 MS.gene33115:intron 25.0%
! ACATGAGAAGTAAAAATCAA+TGG + chr1.1:7465927-7465946 None:intergenic 25.0%
! ACATTGCTTTGTATATGTTT+CGG + chr1.1:7464031-7464050 None:intergenic 25.0%
! AGAAGAATTGCTTATTTAAC+AGG + chr1.1:7465904-7465923 None:intergenic 25.0%
! CTAAAGAAACAAGAAAGTAA+AGG + chr1.1:7463724-7463743 None:intergenic 25.0%
! GCAACATAAAAAGATTCAAA+CGG + chr1.1:7463911-7463930 None:intergenic 25.0%
! TAACTTATACAAGGAAAGAT+GGG + chr1.1:7465739-7465758 None:intergenic 25.0%
! TACAAAGTGTAACTTATACA+AGG + chr1.1:7465748-7465767 None:intergenic 25.0%
! TATTAAGACAAAGAACAGAT+TGG + chr1.1:7467420-7467439 None:intergenic 25.0%
! TGAGAAAATCAAGTAATTCA+AGG + chr1.1:7464290-7464309 None:intergenic 25.0%
! TTATAAACGCGTAATGATAA+CGG - chr1.1:7466493-7466512 MS.gene33115:intron 25.0%
! TTGCATACAATGAGTTATAT+GGG + chr1.1:7464426-7464445 None:intergenic 25.0%
! TTTAACAGGAAACTAATACA+AGG + chr1.1:7465890-7465909 None:intergenic 25.0%
! TTTGCATACAATGAGTTATA+TGG + chr1.1:7464427-7464446 None:intergenic 25.0%
!! AGTTTCTGGAAAATAAATCA+CGG + chr1.1:7463967-7463986 None:intergenic 25.0%
!! TATTTTGTTAGTGTCATGTT+AGG + chr1.1:7467220-7467239 None:intergenic 25.0%
!! TTTCAGATTTTGTCAAACTT+GGG + chr1.1:7467491-7467510 None:intergenic 25.0%
!! TTTGTTATGACAGTAAATCA+CGG - chr1.1:7463934-7463953 MS.gene33115:CDS 25.0%
!! TTTTCAGATTTTGTCAAACT+TGG + chr1.1:7467492-7467511 None:intergenic 25.0%
!! TTTTTCTTTTTCTGTACTGT+TGG - chr1.1:7463771-7463790 MS.gene33115:CDS 25.0%
!!! ATAGTTTGCAAAGTCTTTTA+TGG - chr1.1:7464662-7464681 MS.gene33115:CDS 25.0%
!!! GTATTTGGTGAATCTATTTT+AGG - chr1.1:7466941-7466960 MS.gene33115:intron 25.0%
!!! TGAATCTATTTTAGGGAATA+GGG - chr1.1:7466949-7466968 MS.gene33115:intron 25.0%
!!! TGTTCTAAAATGTGATATAC+TGG + chr1.1:7467375-7467394 None:intergenic 25.0%
!!! TTTATTTTCCAGAAACTTTG+AGG - chr1.1:7463970-7463989 MS.gene33115:CDS 25.0%
AAAAAGATTCAAACGGTTAC+TGG + chr1.1:7463904-7463923 None:intergenic 30.0%
AACTTATACAAGGAAAGATG+GGG + chr1.1:7465738-7465757 None:intergenic 30.0%
ACAAATCAACAAAACTAGAG+AGG + chr1.1:7467042-7467061 None:intergenic 30.0%
ATATCATAAGTAGTAATCCC+AGG + chr1.1:7466836-7466855 None:intergenic 30.0%
ATCAAAAACTTCTGTTGATC+CGG - chr1.1:7466325-7466344 MS.gene33115:intron 30.0%
ATGACAGAGGATATTGATAA+AGG - chr1.1:7466155-7466174 MS.gene33115:intron 30.0%
CAAAAGACATTCTATCTCTT+AGG - chr1.1:7468004-7468023 MS.gene33115:CDS 30.0%
CAATAAGTTTGTGAGAATCA+AGG + chr1.1:7464003-7464022 None:intergenic 30.0%
CTGAGGATCTAAAGATAATT+GGG - chr1.1:7466282-7466301 MS.gene33115:intron 30.0%
CTTGCTGAAACTATTTAAAG+TGG - chr1.1:7466703-7466722 MS.gene33115:intron 30.0%
GAACTTTGCACATATTTCAA+AGG + chr1.1:7466063-7466082 None:intergenic 30.0%
GAATCAAACTCAATACTTCA+GGG + chr1.1:7465503-7465522 None:intergenic 30.0%
GGAGAATATTTGACAAGTTA+TGG - chr1.1:7467865-7467884 MS.gene33115:intron 30.0%
GTAACTTATACAAGGAAAGA+TGG + chr1.1:7465740-7465759 None:intergenic 30.0%
TACGAAAGATACTTGATGTA+AGG + chr1.1:7466208-7466227 None:intergenic 30.0%
TCTGAAAAGAAGAACATATG+TGG - chr1.1:7467504-7467523 MS.gene33115:intron 30.0%
TCTGAGGATCTAAAGATAAT+TGG - chr1.1:7466281-7466300 MS.gene33115:intron 30.0%
TGATATGTACCTGCATAAAT+TGG + chr1.1:7465788-7465807 None:intergenic 30.0%
TTACAACCGAAAATTAACAC+AGG - chr1.1:7466370-7466389 MS.gene33115:intron 30.0%
TTTGACAAGTTATGGAATGT+TGG - chr1.1:7467873-7467892 MS.gene33115:intron 30.0%
! AAAGAAAAAGCGTGATATTG+AGG - chr1.1:7466898-7466917 MS.gene33115:intron 30.0%
! AACAGAAGTTTTTGATGCTA+TGG + chr1.1:7466321-7466340 None:intergenic 30.0%
! ACATGCATCTTAATACCTTT+TGG - chr1.1:7465600-7465619 MS.gene33115:CDS 30.0%
! AGAATGTCTTTTGTGTCTTA+AGG + chr1.1:7467997-7468016 None:intergenic 30.0%
! ATTTGATCAAGTTTTGCGTT+TGG - chr1.1:7465388-7465407 MS.gene33115:CDS 30.0%
! GTAATTATATGTGTCGATGT+TGG + chr1.1:7464268-7464287 None:intergenic 30.0%
! GTGATTTTGCAAAAGCTATA+AGG - chr1.1:7464105-7464124 MS.gene33115:CDS 30.0%
! TATCGACCTGTGTTAATTTT+CGG + chr1.1:7466379-7466398 None:intergenic 30.0%
! TGTAGCACATGATTTTTAAC+AGG + chr1.1:7464862-7464881 None:intergenic 30.0%
!! AAGTTGGTTGATAGTTATCT+TGG - chr1.1:7466989-7467008 MS.gene33115:intron 30.0%
!! AATGATAACGGTGAAATCTA+AGG - chr1.1:7466505-7466524 MS.gene33115:intron 30.0%
!! ATGATAACGGTGAAATCTAA+GGG - chr1.1:7466506-7466525 MS.gene33115:intron 30.0%
!! GTGAATCTATTTTAGGGAAT+AGG - chr1.1:7466948-7466967 MS.gene33115:intron 30.0%
!! TATGGAATGTTGGTAGTAAA+GGG - chr1.1:7467883-7467902 MS.gene33115:intron 30.0%
!! TTATGGAATGTTGGTAGTAA+AGG - chr1.1:7467882-7467901 MS.gene33115:intron 30.0%
!!! ACTGAAATAGTTTTGGTGTT+TGG - chr1.1:7463868-7463887 MS.gene33115:CDS 30.0%
!!! ATTTTTTGTCTGTGAAGCAT+TGG - chr1.1:7467180-7467199 MS.gene33115:intron 30.0%
AAACAGTGTGTATGTATAGG+TGG - chr1.1:7464611-7464630 MS.gene33115:CDS 35.0%
AAACTAGAGAGGCTAAGATT+AGG + chr1.1:7467031-7467050 None:intergenic 35.0%
AAATCTAAGGGAAGAATGGA+CGG - chr1.1:7466518-7466537 MS.gene33115:intron 35.0%
AAGATGCCAGCTATGAAATA+CGG + chr1.1:7464360-7464379 None:intergenic 35.0%
AATAGGGCGATATTGAATCT+CGG - chr1.1:7466965-7466984 MS.gene33115:intron 35.0%
AATCTGATGGCAAATTTGTC+AGG - chr1.1:7463638-7463657 MS.gene33115:CDS 35.0%
ACACTAATAGTTTACCACCA+GGG - chr1.1:7465436-7465455 MS.gene33115:CDS 35.0%
ACCAGAAACTCACAATTTGA+AGG + chr1.1:7464577-7464596 None:intergenic 35.0%
ACCTATACATACACACTGTT+TGG + chr1.1:7464612-7464631 None:intergenic 35.0%
AGACATGCTTAACAAAGCAT+TGG + chr1.1:7464982-7465001 None:intergenic 35.0%
AGAGAGAGAGGTTTAATTGA+AGG - chr1.1:7464543-7464562 MS.gene33115:CDS 35.0%
AGTAGCAAAAATAGCAGAAG+TGG - chr1.1:7467816-7467835 MS.gene33115:intron 35.0%
ATATGTGCAAAGTTCTGCTA+TGG - chr1.1:7466068-7466087 MS.gene33115:intron 35.0%
ATTCCTCGTCTCCATTTATT+AGG + chr1.1:7467692-7467711 None:intergenic 35.0%
ATTTGCAGACCCTACAAAAA+TGG + chr1.1:7465107-7465126 None:intergenic 35.0%
CTACACATGTATTCCACATT+TGG - chr1.1:7464877-7464896 MS.gene33115:CDS 35.0%
CTTGGAGATACAAAATCTTC+TGG - chr1.1:7467966-7467985 MS.gene33115:CDS 35.0%
GATTAGTAATGTCCCAATGT+CGG - chr1.1:7464236-7464255 MS.gene33115:intron 35.0%
GGAATCAAACTCAATACTTC+AGG + chr1.1:7465504-7465523 None:intergenic 35.0%
GTTATATGGGTTTCTCTTGA+AGG + chr1.1:7464413-7464432 None:intergenic 35.0%
TACACTAATAGTTTACCACC+AGG - chr1.1:7465435-7465454 MS.gene33115:CDS 35.0%
TACCTTCAAGTAGATATCGA+TGG + chr1.1:7467116-7467135 None:intergenic 35.0%
TAGTTTCAGCAAGAAACTAC+AGG + chr1.1:7466696-7466715 None:intergenic 35.0%
TCCAAACAGTGTGTATGTAT+AGG - chr1.1:7464608-7464627 MS.gene33115:CDS 35.0%
TCTGAATGCTTACAATGTTG+TGG - chr1.1:7466103-7466122 MS.gene33115:intron 35.0%
TGAAAACCTATGCTGTTAGA+TGG - chr1.1:7466561-7466580 MS.gene33115:intron 35.0%
TGTAAAGTTTGACCTTCACA+AGG - chr1.1:7465846-7465865 MS.gene33115:intron 35.0%
TGTTTATTGCCGTGTGATAA+CGG - chr1.1:7466659-7466678 MS.gene33115:intron 35.0%
TTCCTCGTCTCCATTTATTA+GGG + chr1.1:7467691-7467710 None:intergenic 35.0%
TTCTTCTCTGGATGATTCAT+CGG + chr1.1:7466744-7466763 None:intergenic 35.0%
TTTGCTAGACCAAATCATGA+CGG - chr1.1:7467079-7467098 MS.gene33115:intron 35.0%
! AAAAAGTACACACCTTGTGA+AGG + chr1.1:7465861-7465880 None:intergenic 35.0%
! AAGGTAAGATTTTGCTACCT+TGG - chr1.1:7467130-7467149 MS.gene33115:intron 35.0%
! ACTATTTAAAGTGGCCATAC+TGG - chr1.1:7466712-7466731 MS.gene33115:intron 35.0%
! CAGAAGATTTTGTATCTCCA+AGG + chr1.1:7467968-7467987 None:intergenic 35.0%
! CATTTGCGTGAATCATTTTC+AGG - chr1.1:7467461-7467480 MS.gene33115:intron 35.0%
! TGTTTTTCACCACATTCACA+TGG + chr1.1:7465583-7465602 None:intergenic 35.0%
! TTTTAGCATGTGAGTTTCAC+TGG - chr1.1:7464760-7464779 MS.gene33115:CDS 35.0%
!! ATTTTCCAGAAACTTTGAGG+TGG - chr1.1:7463973-7463992 MS.gene33115:CDS 35.0%
!! TGATTTGGTCTAGCAAAATC+TGG + chr1.1:7467076-7467095 None:intergenic 35.0%
!! TGTCAAGGATTTACTGATTC+CGG - chr1.1:7466802-7466821 MS.gene33115:intron 35.0%
!!! TGCAGTTAGCCATTTTTGTA+GGG - chr1.1:7465095-7465114 MS.gene33115:CDS 35.0%
AAGAAGTGAAAACACCTCCA+AGG + chr1.1:7467150-7467169 None:intergenic 40.0%
AAGTATCTTTCGTAGCTGGA+AGG - chr1.1:7466214-7466233 MS.gene33115:intron 40.0%
ACAATTACCCCACACAATGT+AGG + chr1.1:7465683-7465702 None:intergenic 40.0%
ACCAATGCATCAACAGAATC+AGG + chr1.1:7466590-7466609 None:intergenic 40.0%
AGCCATCGATATCTACTTGA+AGG - chr1.1:7467111-7467130 MS.gene33115:intron 40.0%
ATCTTTAGATCCTCAGACCA+AGG + chr1.1:7466278-7466297 None:intergenic 40.0%
ATTGCATGAAGCTTCTGTCA+AGG - chr1.1:7466787-7466806 MS.gene33115:intron 40.0%
ATTGGGACATTACTAATCCG+AGG + chr1.1:7464234-7464253 None:intergenic 40.0%
ATTTACTTGGACGATTTCCC+TGG - chr1.1:7466026-7466045 MS.gene33115:intron 40.0%
ATTTGCATGCCTACATTGTG+TGG - chr1.1:7465671-7465690 MS.gene33115:intron 40.0%
CAATATCCTCTGTCATCTCA+AGG + chr1.1:7466151-7466170 None:intergenic 40.0%
CATCAAGTATCTTTCGTAGC+TGG - chr1.1:7466210-7466229 MS.gene33115:intron 40.0%
CCAGCTATGAAATACGGATA+CGG + chr1.1:7464354-7464373 None:intergenic 40.0%
CTACAAAAATGGCTAACTGC+AGG + chr1.1:7465096-7465115 None:intergenic 40.0%
CTGTACAAACCGTCATGATT+TGG + chr1.1:7467091-7467110 None:intergenic 40.0%
GAAAATTGAGTCTGTTCCGA+AGG - chr1.1:7466430-7466449 MS.gene33115:intron 40.0%
GAAACTCACAATTTGAAGGC+TGG + chr1.1:7464573-7464592 None:intergenic 40.0%
GAAATTGACTGCTGATGCAT+CGG - chr1.1:7467542-7467561 MS.gene33115:intron 40.0%
GAGAGAGGTTTAATTGAAGG+TGG - chr1.1:7464546-7464565 MS.gene33115:CDS 40.0%
GATATTGAATCTCGGCAAGT+TGG - chr1.1:7466973-7466992 MS.gene33115:intron 40.0%
GATTGCTCTTTGACAGTAGA+GGG + chr1.1:7465959-7465978 None:intergenic 40.0%
GCAACTGAAATTCAGCCAAA+AGG + chr1.1:7465618-7465637 None:intergenic 40.0%
GCACATATTTCAAAGGCCTT+GGG + chr1.1:7466056-7466075 None:intergenic 40.0%
GCCTTCAAATTGTGAGTTTC+TGG - chr1.1:7464573-7464592 MS.gene33115:CDS 40.0%
GCTGTTCATCAATTCTTCTC+TGG + chr1.1:7466756-7466775 None:intergenic 40.0%
GGTGAAATCTAAGGGAAGAA+TGG - chr1.1:7466514-7466533 MS.gene33115:intron 40.0%
GTAAACCACCTCAAAGTTTC+TGG + chr1.1:7463981-7464000 None:intergenic 40.0%
GTGATGTATCCATGTGAATG+TGG - chr1.1:7465571-7465590 MS.gene33115:CDS 40.0%
GTGTGTATGTATAGGTGGTA+TGG - chr1.1:7464616-7464635 MS.gene33115:CDS 40.0%
TAAGACCAAGTGATGTTTGC+CGG + chr1.1:7466347-7466366 None:intergenic 40.0%
TACACTACACTGACCAAATG+TGG + chr1.1:7464893-7464912 None:intergenic 40.0%
TCTCCATTTATTAGGGCATG+TGG + chr1.1:7467684-7467703 None:intergenic 40.0%
TCTTTAGATCCTCAGACCAA+GGG + chr1.1:7466277-7466296 None:intergenic 40.0%
TGCACATATTTCAAAGGCCT+TGG + chr1.1:7466057-7466076 None:intergenic 40.0%
TTGTTTGTCTGTTGAGGGAA+TGG + chr1.1:7467740-7467759 None:intergenic 40.0%
TTTGCATGCCTACATTGTGT+GGG - chr1.1:7465672-7465691 MS.gene33115:intron 40.0%
! AACGACTTGTTTGTCTGTTG+AGG + chr1.1:7467746-7467765 None:intergenic 40.0%
! ACGACTTGTTTGTCTGTTGA+GGG + chr1.1:7467745-7467764 None:intergenic 40.0%
! ATGTCTTCCACAGAAAGTGT+CGG - chr1.1:7467293-7467312 MS.gene33115:intron 40.0%
! GTAAGATTTTGCTACCTTGG+AGG - chr1.1:7467133-7467152 MS.gene33115:intron 40.0%
! GTTTCGTAAGAGTGTGAGAT+TGG - chr1.1:7467785-7467804 MS.gene33115:intron 40.0%
! TAGTTGTGCAAGCATTGTTC+AGG + chr1.1:7467352-7467371 None:intergenic 40.0%
!! AATGTTGGTAGTAAAGGGCA+TGG - chr1.1:7467888-7467907 MS.gene33115:intron 40.0%
!! CTTACAGAAGTTGGTGTCAA+AGG - chr1.1:7465980-7465999 MS.gene33115:intron 40.0%
!!! CTGCAGTTAGCCATTTTTGT+AGG - chr1.1:7465094-7465113 MS.gene33115:CDS 40.0%
AATAGGAGTTCAGAGGCTTC+AGG - chr1.1:7467915-7467934 MS.gene33115:intron 45.0%
AATATTCTCCTCGACCGAGA+CGG + chr1.1:7467855-7467874 None:intergenic 45.0%
ACAGGTCGATAAAGTCGTTG+AGG - chr1.1:7466388-7466407 MS.gene33115:intron 45.0%
AGGCAACCATCTAACAGCAT+AGG + chr1.1:7466570-7466589 None:intergenic 45.0%
AGTCCAACTTCTGTAGTCCT+TGG - chr1.1:7467948-7467967 MS.gene33115:intron 45.0%
ATAGGAGTTCAGAGGCTTCA+GGG - chr1.1:7467916-7467935 MS.gene33115:intron 45.0%
ATCGAAGCACAAACACTCCT+CGG - chr1.1:7464214-7464233 MS.gene33115:intron 45.0%
CAACCAACACCGTTATCACA+CGG + chr1.1:7466671-7466690 None:intergenic 45.0%
CAACTACTTTCACTACACCC+TGG + chr1.1:7465456-7465475 None:intergenic 45.0%
CAGGGTGTAGTGAAAGTAGT+TGG - chr1.1:7465454-7465473 MS.gene33115:CDS 45.0%
CCATCAGATTGAAGTGCATC+AGG + chr1.1:7463628-7463647 None:intergenic 45.0%
CCATTTATTAGGGCATGTGG+AGG + chr1.1:7467681-7467700 None:intergenic 45.0%
CCGTATCCGTATTTCATAGC+TGG - chr1.1:7464351-7464370 MS.gene33115:intron 45.0%
CCTCCACATGCCCTAATAAA+TGG - chr1.1:7467678-7467697 MS.gene33115:intron 45.0%
CCTGATGCACTTCAATCTGA+TGG - chr1.1:7463625-7463644 MS.gene33115:CDS 45.0%
CGATTGCTCTTTGACAGTAG+AGG + chr1.1:7465960-7465979 None:intergenic 45.0%
CTGCTAAATCTCTTCTCCCT+TGG - chr1.1:7466258-7466277 MS.gene33115:intron 45.0%
GAGCAATCGCTTACAGAAGT+TGG - chr1.1:7465971-7465990 MS.gene33115:intron 45.0%
GAGGAATGCGAGAAAACTCT+GGG - chr1.1:7467705-7467724 MS.gene33115:intron 45.0%
GATAGGATGTCTGCTAGGTT+CGG + chr1.1:7464197-7464216 None:intergenic 45.0%
GCCTGATTCTGTTGATGCAT+TGG - chr1.1:7466586-7466605 MS.gene33115:intron 45.0%
GGTTGAGGATATATGTGAGC+TGG - chr1.1:7466460-7466479 MS.gene33115:intron 45.0%
TCTCCAAGGACTACAGAAGT+TGG + chr1.1:7467954-7467973 None:intergenic 45.0%
TGAAATACGGATACGGACAC+CGG + chr1.1:7464347-7464366 None:intergenic 45.0%
TGCATGGAGGAACAAATCTC+TGG - chr1.1:7466622-7466641 MS.gene33115:intron 45.0%
TGCCCTAATAAATGGAGACG+AGG - chr1.1:7467686-7467705 MS.gene33115:intron 45.0%
TGGACTGTTAGCAAATGCTC+GGG + chr1.1:7467652-7467671 None:intergenic 45.0%
TGGAGAGAATAGGAGTTCAG+AGG - chr1.1:7467908-7467927 MS.gene33115:intron 45.0%
TGGTTTCTGATGCTCATGCA+TGG - chr1.1:7466606-7466625 MS.gene33115:intron 45.0%
TTGAGTCTGTTCCGAAGGAT+TGG - chr1.1:7466435-7466454 MS.gene33115:intron 45.0%
TTGATCCGGCAAACATCACT+TGG - chr1.1:7466339-7466358 MS.gene33115:intron 45.0%
TTGCATGCCTACATTGTGTG+GGG - chr1.1:7465673-7465692 MS.gene33115:intron 45.0%
TTTCTGATGCTCATGCATGG+AGG - chr1.1:7466609-7466628 MS.gene33115:intron 45.0%
! GTAAAGGGCATGGAGAGAAT+AGG - chr1.1:7467898-7467917 MS.gene33115:intron 45.0%
! GTGGACTGTTAGCAAATGCT+CGG + chr1.1:7467653-7467672 None:intergenic 45.0%
!! AGAATGGACGGTGTTGTGAT+TGG - chr1.1:7466530-7466549 MS.gene33115:intron 45.0%
!! AGGAGTGTTTGTGCTTCGAT+AGG + chr1.1:7464214-7464233 None:intergenic 45.0%
!! AGGATTTACTGATTCCGGCT+AGG - chr1.1:7466807-7466826 MS.gene33115:intron 45.0%
!! TATAGCACCGACACTTTCTG+TGG + chr1.1:7467303-7467322 None:intergenic 45.0%
!! TGAGTTTCTGGTTGAGCTTG+TGG - chr1.1:7464585-7464604 MS.gene33115:CDS 45.0%
!! TTCATCGGCTTCAACCAGTA+TGG + chr1.1:7466729-7466748 None:intergenic 45.0%
ACCAAACATGGTACCGCGTT+AGG - chr1.1:7464058-7464077 MS.gene33115:CDS 50.0%
ACCTAACGCGGTACCATGTT+TGG + chr1.1:7464062-7464081 None:intergenic 50.0%
AGAGTCTGAGAGAGAGAGAG+AGG - chr1.1:7464531-7464550 MS.gene33115:CDS 50.0%
AGTCTGTTCCGAAGGATTGG+TGG - chr1.1:7466438-7466457 MS.gene33115:intron 50.0%
ATCTCTTCTCCCTTGGTCTG+AGG - chr1.1:7466265-7466284 MS.gene33115:intron 50.0%
ATGTTGGACACGACCGACAT+TGG + chr1.1:7464252-7464271 None:intergenic 50.0%
CGAGGAATGCGAGAAAACTC+TGG - chr1.1:7467704-7467723 MS.gene33115:intron 50.0%
CTACTTTCACTACACCCTGG+TGG + chr1.1:7465453-7465472 None:intergenic 50.0%
GCTTCGATAGGATGTCTGCT+AGG + chr1.1:7464202-7464221 None:intergenic 50.0%
TACTTGGACGATTTCCCTGG+TGG - chr1.1:7466029-7466048 MS.gene33115:intron 50.0%
TCCTCAACCCACCAATCCTT+CGG + chr1.1:7466449-7466468 None:intergenic 50.0%
TGTTGGACACGACCGACATT+GGG + chr1.1:7464251-7464270 None:intergenic 50.0%
! AGTTGGTGCGCATGGTATGT+GGG - chr1.1:7465471-7465490 MS.gene33115:CDS 50.0%
! GGAGTACCTTGAGATGACAG+AGG - chr1.1:7466142-7466161 MS.gene33115:intron 50.0%
! GTCTGTTCCGAAGGATTGGT+GGG - chr1.1:7466439-7466458 MS.gene33115:intron 50.0%
! GTGAAAGTAGTTGGTGCGCA+TGG - chr1.1:7465463-7465482 MS.gene33115:CDS 50.0%
! TAGTTGGTGCGCATGGTATG+TGG - chr1.1:7465470-7465489 MS.gene33115:CDS 50.0%
!! TTGCCGTGTGATAACGGTGT+TGG - chr1.1:7466665-7466684 MS.gene33115:intron 50.0%
ACTGCTAGCCACCGTGATTC+CGG + chr1.1:7464087-7464106 None:intergenic 55.0%
AGGGCATGTGGAGGATTGTG+TGG + chr1.1:7467672-7467691 None:intergenic 55.0%
CGCATGCTGCACAGAACGAA+CGG - chr1.1:7467565-7467584 MS.gene33115:intron 55.0%
GCATGCAGTTGTTGCCGTCT+CGG - chr1.1:7467838-7467857 MS.gene33115:intron 55.0%
GTAATCCCAGGAGACCTAGC+CGG + chr1.1:7466824-7466843 None:intergenic 55.0%
GTGATTCCGGCAACCTAACG+CGG + chr1.1:7464074-7464093 None:intergenic 55.0%
GTTAGCAAATGCTCGGGCAC+TGG + chr1.1:7467646-7467665 None:intergenic 55.0%
GTTGGTGCGCATGGTATGTG+GGG - chr1.1:7465472-7465491 MS.gene33115:CDS 55.0%
TGATTCCGGCTAGGTCTCCT+GGG - chr1.1:7466816-7466835 MS.gene33115:intron 55.0%
! ATGGTACCGCGTTAGGTTGC+CGG - chr1.1:7464065-7464084 MS.gene33115:CDS 55.0%
! GCGTTAGGTTGCCGGAATCA+CGG - chr1.1:7464073-7464092 MS.gene33115:CDS 55.0%
! TTAGGTTGCCGGAATCACGG+TGG - chr1.1:7464076-7464095 MS.gene33115:CDS 55.0%
!! GGACGGTGTTGTGATTGGTG+AGG - chr1.1:7466535-7466554 MS.gene33115:intron 55.0%
!! TCCGAAGGATTGGTGGGTTG+AGG - chr1.1:7466445-7466464 MS.gene33115:intron 55.0%
AGTTGTTGCCGTCTCGGTCG+AGG - chr1.1:7467844-7467863 MS.gene33115:intron 60.0%
CAAAGGCCTTGGGTCCACCA+GGG + chr1.1:7466046-7466065 None:intergenic 60.0%
CAGCGTCTCAGTGTCGTCTC+CGG - chr1.1:7464325-7464344 MS.gene33115:intron 60.0%
CTGATTCCGGCTAGGTCTCC+TGG - chr1.1:7466815-7466834 MS.gene33115:intron 60.0%
TCAAAGGCCTTGGGTCCACC+AGG + chr1.1:7466047-7466066 None:intergenic 60.0%
TGTGGCTGCTCGATGTGCAG+CGG - chr1.1:7466121-7466140 MS.gene33115:intron 60.0%
! CGATTTCCCTGGTGGACCCA+AGG - chr1.1:7466037-7466056 MS.gene33115:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7463598 7468025 7463598 ID=MS.gene33115
chr1.1 mRNA 7463598 7468025 7463598 ID=MS.gene33115.t1;Parent=MS.gene33115
chr1.1 exon 7467964 7468025 7467964 ID=MS.gene33115.t1.exon1;Parent=MS.gene33115.t1
chr1.1 CDS 7467964 7468025 7467964 ID=cds.MS.gene33115.t1;Parent=MS.gene33115.t1
chr1.1 exon 7465756 7465825 7465756 ID=MS.gene33115.t1.exon2;Parent=MS.gene33115.t1
chr1.1 CDS 7465756 7465825 7465756 ID=cds.MS.gene33115.t1;Parent=MS.gene33115.t1
chr1.1 exon 7464491 7465669 7464491 ID=MS.gene33115.t1.exon3;Parent=MS.gene33115.t1
chr1.1 CDS 7464491 7465669 7464491 ID=cds.MS.gene33115.t1;Parent=MS.gene33115.t1
chr1.1 exon 7463598 7464140 7463598 ID=MS.gene33115.t1.exon4;Parent=MS.gene33115.t1
chr1.1 CDS 7463598 7464140 7463598 ID=cds.MS.gene33115.t1;Parent=MS.gene33115.t1
Gene Sequence

>MS.gene33115

ATGAAGTTTATGAAGTTGGGTTCGAAGCCTGATGCACTTCAATCTGATGGCAAATTTGTCAGGTTAGTTTTATGTTCTTCTCTTCTCTTTTGTTTTTTTTTTCTTTCTTGTTTTCTATTAATACCTTTACTTTCTTGTTTCTTTAGTTCTTCTATTTCATGTGTGTTTTTTTCTTTTTCTTTTTCTGTACTGTTGGTGTTTTCTTACAGTTAAATAGTAGTTAAATGTGTGCTAGTTTGTTTTTAACTGTTTTTCTGTTACTGAATATAAACTGAAATAGTTTTGGTGTTTGGTGAGTCACTGCCAGTAACCGTTTGAATCTTTTTATGTTGCATGTTTGTTATGACAGTAAATCACGGTGAACGACCGTGATTTATTTTCCAGAAACTTTGAGGTGGTTTACCTTGATTCTCACAAACTTATTGTGATACCGAAACATATACAAAGCAATGTTTTAAAAACCAAACATGGTACCGCGTTAGGTTGCCGGAATCACGGTGGCTAGCAGTGATTTTGCAAAAGCTATAAGGTGATTCGTCGTGATTCTGACAATCATTGTGATGATGCAAAATATGCACAAAACATTGTTTTAAAAACCGAACCTAGCAGACATCCTATCGAAGCACAAACACTCCTCGGATTAGTAATGTCCCAATGTCGGTCGTGTCCAACATCGACACATATAATTACCTTGAATTACTTGATTTTCTCAAATTATTAGCGGTGTCAGCGTCTCAGTGTCGTCTCCGGTGTCCGTATCCGTATTTCATAGCTGGCATCTTTAATGCTGCTATTCGAGCATTCAATTTAAGCCTTCAAGAGAAACCCATATAACTCATTGTATGCAAATTACCACTGAAATAGTTTCAATATATTCTATTTTGTTAAAAAAGAAATTATTATTCTATGTTATTATTAACTGTAAAGGGAGAAAGAGTCTGAGAGAGAGAGAGAGGTTTAATTGAAGGTGGTCCAGCCTTCAAATTGTGAGTTTCTGGTTGAGCTTGTGGTCCAAACAGTGTGTATGTATAGGTGGTATGGAGTGCTCAGCATTTAAAGTCATGATAGTTTGCAAAGTCTTTTATGGAACAAATATTAATCGTTATACTATAATAATAATTATTCTTTATATGTTTTTCCTATATATATCATTAGTTTTACTTTTTAGCATGTGAGTTTCACTGGAGTGCTCAGATTATCGCTATCAACTTTTATAATGTGTATAGATTATTTCATAAATATTATGGTTGGTACTTTTCAGCCTGTTAAAAATCATGTGCTACACATGTATTCCACATTTGGTCAGTGTAGTGTACTATTAAATTATTGGATTTGACTCCTCCAAATTAAGTTAAAAAATCAAGAGGGTTATTTCAACACACCAATGCTTTGTTAAGCATGTCTATTATGTAATAAATATCTACTATTGATTAATCCACCAATAATTGTTGATATTAATCATTTTACACTTTAAAAAGCTAGTATTTTGGATGTGCCTGCAGTTAGCCATTTTTGTAGGGTCTGCAAATATTCTTTATCTTATATTATGTGTCTCATTTGTAATATTTTTTTGTTTCCAATCATTTTTTTATGTTAATATAGTTACATTTATTACTTTTTATCAATGTTATCCTTATTTAATAAAATAGTTGCAAGTATATGATGGACAAATAATAAATGATGTATTATTTTGCATTGAAAATTGATATTACTTCTTATGAAGTGTGCGATACATATAATATGAGACGAAGATACTAATTTTTAAAGATGTTACTTCTTACTTTTTTGTCATTTGATCAAGTTTTGCGTTTGGAACTATTTAGTTGCAGCTAAGATGTACACTAATAGTTTACCACCAGGGTGTAGTGAAAGTAGTTGGTGCGCATGGTATGTGGGGTTAAACCCTGAAGTATTGAGTTTGATTCCTAGTGATAGAAAAATGTAATAGTTTTATTAAAAAATGCAATGGTTTTGTGATGTATCCATGTGAATGTGGTGAAAAACATGCATCTTAATACCTTTTGGCTGAATTTCAGTTGCTTATTGCGTATTGACTTTGCGCTGTGACTTGAAATTTGCATGCCTACATTGTGTGGGGTAATTGTATTTTGTGATGAAAGCTTAGTCTTCTATCATTCCCCATCTTTCCTTGTATAAGTTACACTTTGTAAACTAAACAATTCATTTCCAATTTATGCAGGTACATATCATCTGAATTAGCTACAGATATTATCATAGCTATTGGTGATGTAAAGTTTGACCTTCACAAGGTGTGTACTTTTTAAGCTTCCTTGTATTAGTTTCCTGTTAAATAAGCAATTCTTCTCCATTGATTTTTACTTCTCATGTGTTGCAGTTCCCTCTACTGTCAAAGAGCAATCGCTTACAGAAGTTGGTGTCAAAGGCTAACGAAGATAATTCAGATGAAATTTACTTGGACGATTTCCCTGGTGGACCCAAGGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTGACTCTGAATGCTTACAATGTTGTGGCTGCTCGATGTGCAGCGGAGTACCTTGAGATGACAGAGGATATTGATAAAGGAAATTTGATTTTTAAAATTGATGTGTTCCTTACATCAAGTATCTTTCGTAGCTGGAAGGATTCTATAATTGTTCTTCAAACTGCTAAATCTCTTCTCCCTTGGTCTGAGGATCTAAAGATAATTGGGAGATGCATAGATTCCATAGCATCAAAAACTTCTGTTGATCCGGCAAACATCACTTGGTCTTACACTTACAACCGAAAATTAACACAGGTCGATAAAGTCGTTGAGGACAAGATAACATTGAAAGAGAAAATTGAGTCTGTTCCGAAGGATTGGTGGGTTGAGGATATATGTGAGCTGGACATTGATCTTTATAAACGCGTAATGATAACGGTGAAATCTAAGGGAAGAATGGACGGTGTTGTGATTGGTGAGGCGCTGAAAACCTATGCTGTTAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCTGATGCTCATGCATGGAGGAACAAATCTCTGGTAGAAACAATTGTGTGTTTATTGCCGTGTGATAACGGTGTTGGTTGTTCCTGTAGTTTCTTGCTGAAACTATTTAAAGTGGCCATACTGGTTGAAGCCGATGAATCATCCAGAGAAGAATTGATGAACAGCATCAGCTTAAAATTGCATGAAGCTTCTGTCAAGGATTTACTGATTCCGGCTAGGTCTCCTGGGATTACTACTTATGATATTGATTTGGTGCAAGATCTTTTGAATCGATACATGACTAACGAAAAGAAAAAGCGTGATATTGAGGTTACAGATATGAAAGATAAAGTATTTGGTGAATCTATTTTAGGGAATAGGGCGATATTGAATCTCGGCAAGTTGGTTGATAGTTATCTTGGAGAAATTGCACATGATCCTAATCTTAGCCTCTCTAGTTTTGTTGATTTGTCAGAGTCAATTCCAGATTTTGCTAGACCAAATCATGACGGTTTGTACAGAGCCATCGATATCTACTTGAAGGTAAGATTTTGCTACCTTGGAGGTGTTTTCACTTCTTTTTCTGTTATATTTTTTGTCTGTGAAGCATTGGCATAGATACAAATTCCTAACATGACACTAACAAAATAACACCTGAAATAATTCGAGAAAATAAATTAATTTAATATAATCAGATGTGCAAATGTCTTCCACAGAAAGTGTCGGTGCTATATATGTTTTTTTTATTACTAGTTTTTGCCTGAACAATGCTTGCACAACTACCAGTATATCACATTTTAGAACACTAGCATTTTTCTATTTCTGCACCAATCTGTTCTTTGTCTTAATAACGTTAATATTTAATAATATTCATTTGCGTGAATCATTTTCAGGAACACCCAAGTTTGACAAAATCTGAAAAGAAGAACATATGTGGACTGATGAATGTCAAGAAATTGACTGCTGATGCATCGGCGCATGCTGCACAGAACGAACGGCTTCCACTTCGAGTTGTAGTGCAGGTTCTGTATTTTGAACAAGTTAGAGCTGCAGCCAGTGCCCGAGCATTTGCTAACAGTCCACACAATCCTCCACATGCCCTAATAAATGGAGACGAGGAATGCGAGAAAACTCTGGGAGTGAGCTGCCATTCCCTCAACAGACAAACAAGTCGTTTGAAGATTAAAGACGATGAGTTTCGTAAGAGTGTGAGATTGGATAAAAAGAGTAGCAAAAATAGCAGAAGTGGCATGCAGTTGTTGCCGTCTCGGTCGAGGAGAATATTTGACAAGTTATGGAATGTTGGTAGTAAAGGGCATGGAGAGAATAGGAGTTCAGAGGCTTCAGGGAGTTCTAATAGTCCAACTTCTGTAGTCCTTGGAGATACAAAATCTTCTGGTTCATCCTTAAGACACAAAAGACATTCTATCTCTTAG
Protein sequence

>MS.gene33115.t1

MKFMKLGSKPDALQSDGKFVRYISSELATDIIIAIGDVKFDLHKFPLLSKSNRLQKLVSKANEDNSDEIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIDKGNLIFKIDVFLTSSIFRSWKDSIIVLQTAKSLLPWSEDLKIIGRCIDSIASKTSVDPANITWSYTYNRKLTQVDKVVEDKITLKEKIESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKTYAVRWLPDSVDALVSDAHAWRNKSLVETIVCLLPCDNGVGCSCSFLLKLFKVAILVEADESSREELMNSISLKLHEASVKDLLIPARSPGITTYDIDLVQDLLNRYMTNEKKKRDIEVTDMKDKVFGESILGNRAILNLGKLVDSYLGEIAHDPNLSLSSFVDLSESIPDFARPNHDGLYRAIDIYLKEHPSLTKSEKKNICGLMNVKKLTADASAHAAQNERLPLRVVVQVLYFEQVRAAASARAFANSPHNPPHALINGDEECEKTLGVSCHSLNRQTSRLKIKDDEFRKSVRLDKKSSKNSRSGMQLLPSRSRRIFDKLWNVGSKGHGENRSSEASGSSNSPTSVVLGDTKSSGSSLRHKRHSIS