AlfalfaGEDB | MS.gene051487

M. sativa cultivar XinJiangDaYe / MS.gene051487

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00651.34 PF03000.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051487.t1	XP_003588859.1	97.4	617	16	0	1	617	1	617	0.00E+00	1187.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051487.t1	Q8H1D3	57.5	591	196	12	1	584	1	543	1.8e-177	624.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051487.t1	G7I878	97.4	617	16	0	1	617	1	617	0.0e+00	1187.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene051487	0.802994	4.31E-49	-1.69E-46
MS.gene051487	MS.gene054184	0.800449	1.43E-48	-1.69E-46
MS.gene051487	MS.gene054185	0.80125	9.84E-49	-1.69E-46
MS.gene051487	MS.gene056069	-0.801997	6.91E-49	-1.69E-46
MS.gene051487	MS.gene057260	0.805141	1.54E-49	-1.69E-46
MS.gene051487	MS.gene058168	0.814979	1.17E-51	-1.69E-46
MS.gene051487	MS.gene058484	0.956618	1.93E-114	-1.69E-46
MS.gene051487	MS.gene061788	0.81299	3.21E-51	-1.69E-46
MS.gene051487	MS.gene065137	0.803229	3.85E-49	-1.69E-46
MS.gene051487	MS.gene065138	0.804575	2.02E-49	-1.69E-46

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene060275	MS.gene051487	PPI
MS.gene71625	MS.gene051487	PPI
MS.gene76815	MS.gene051487	PPI
MS.gene91300	MS.gene051487	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051487.t1	MTR_1g014070	97.407	617	16	0	1	617	1	617	0.0	1235
MS.gene051487.t1	MTR_5g015790	50.464	646	275	13	1	617	1	630	0.0	592
MS.gene051487.t1	MTR_1g106430	48.523	643	287	15	1	617	1	625	0.0	553
MS.gene051487.t1	MTR_5g032780	47.070	529	239	10	1	493	1	524	9.23e-153	454
MS.gene051487.t1	MTR_8g069330	40.806	620	305	13	1	582	1	596	7.07e-136	409
MS.gene051487.t1	MTR_4g134210	39.046	566	298	11	1	546	1	539	4.99e-134	405
MS.gene051487.t1	MTR_2g009340	38.262	541	273	9	6	492	19	552	3.73e-123	380
MS.gene051487.t1	MTR_4g093850	39.155	521	264	9	22	499	39	549	4.09e-123	379
MS.gene051487.t1	MTR_2g027410	36.086	557	314	9	1	548	1	524	1.93e-118	364
MS.gene051487.t1	MTR_2g018750	40.551	508	280	11	1	492	1	502	8.89e-116	358

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051487.t1	AT4G31820	57.653	588	192	12	1	581	1	538	0.0	650
MS.gene051487.t1	AT4G31820	56.636	535	175	12	54	581	1	485	0.0	572
MS.gene051487.t1	AT2G14820	52.505	499	225	4	1	493	1	493	1.64e-179	523
MS.gene051487.t1	AT2G14820	52.505	499	225	4	1	493	1	493	1.64e-179	523
MS.gene051487.t1	AT5G67440	46.777	605	273	11	1	597	1	564	7.24e-175	509
MS.gene051487.t1	AT5G67440	46.777	605	273	11	1	597	1	564	7.24e-175	509
MS.gene051487.t1	AT4G37590	46.050	595	250	16	1	573	1	546	3.75e-167	489
MS.gene051487.t1	AT2G23050	48.207	502	212	9	1	497	1	459	3.31e-157	460
MS.gene051487.t1	AT5G67440	45.213	564	260	11	42	597	5	527	2.43e-150	445
MS.gene051487.t1	AT1G67900	45.524	525	241	9	1	492	1	513	8.43e-143	429

Showing 1 to 10 of 81 entries

Previous1 2 3 4 5…9Next

Find 125 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACATTCTATCTCTTA+GGG	0.466446	1.3:-8081534	None:intergenic
AAACTAGAGAGGCTAAGATT+AGG	0.511940	1.3:+8082511	None:intergenic
AAATATGAAGTTTATGAAGT+TGG	0.325575	1.3:-8085924	None:intergenic
AAATCTAAGGGAAGAATGGA+CGG	0.638803	1.3:-8083021	MS.gene051487:CDS
AACGACTTGTTTGTCTGTTG+AGG	0.472812	1.3:+8081796	None:intergenic
AAGTATCTTTCGTAGCTGGA+AGG	0.582873	1.3:-8083325	MS.gene051487:CDS
AAGTTGGTTGATAGTTATCT+TGG	0.460673	1.3:-8082550	MS.gene051487:CDS
AATAGGAGTTCAGAGGCTTC+AGG	0.361947	1.3:-8081624	MS.gene051487:CDS
AATAGGGCGATATTGAATCT+CGG	0.610706	1.3:-8082574	MS.gene051487:CDS
AATATGAAGTTTATGAAGTT+GGG	0.342765	1.3:-8085923	MS.gene051487:CDS

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGCTGCAAGTATATGA+TGG	-	chr1.3:8083145-8083164	MS.gene051487:CDS	30.0%
AACTTATACAAGGAAAGATG+GGG	+	chr1.3:8083655-8083674	None:intergenic	30.0%
AATCTGATGGCAAATTTATC+AGG	-	chr1.3:8081576-8081595	MS.gene051487:CDS	30.0%
ACAAATCAACAAAACTAGAG+AGG	+	chr1.3:8084959-8084978	None:intergenic	30.0%
ATATCATAAGTAGTAATCCC+AGG	+	chr1.3:8084753-8084772	None:intergenic	30.0%
ATCAAAAACTTCTGTTGATC+CGG	-	chr1.3:8084242-8084261	MS.gene051487:intron	30.0%
ATGACAGAGGATATTGATAA+AGG	-	chr1.3:8084072-8084091	MS.gene051487:intron	30.0%
CAATAAGTTTGTGAGAATCA+AGG	+	chr1.3:8081941-8081960	None:intergenic	30.0%
CTGAGGATCTAAAGATAATT+GGG	-	chr1.3:8084199-8084218	MS.gene051487:intron	30.0%
CTTGCTGAAACTATTTAAAG+TGG	-	chr1.3:8084620-8084639	MS.gene051487:intron	30.0%

Showing 1 to 10 of 256 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	8081536	8085942	8081536	ID=MS.gene051487
chr1.3	mRNA	8081536	8085942	8081536	ID=MS.gene051487.t1;Parent=MS.gene051487
chr1.3	exon	8085881	8085942	8085881	ID=MS.gene051487.t1.exon1;Parent=MS.gene051487.t1
chr1.3	CDS	8085881	8085942	8085881	ID=cds.MS.gene051487.t1;Parent=MS.gene051487.t1
chr1.3	exon	8083694	8083763	8083694	ID=MS.gene051487.t1.exon2;Parent=MS.gene051487.t1
chr1.3	CDS	8083694	8083763	8083694	ID=cds.MS.gene051487.t1;Parent=MS.gene051487.t1
chr1.3	exon	8082429	8083607	8082429	ID=MS.gene051487.t1.exon3;Parent=MS.gene051487.t1
chr1.3	CDS	8082429	8083607	8082429	ID=cds.MS.gene051487.t1;Parent=MS.gene051487.t1
chr1.3	exon	8081536	8082078	8081536	ID=MS.gene051487.t1.exon4;Parent=MS.gene051487.t1
chr1.3	CDS	8081536	8082078	8081536	ID=cds.MS.gene051487.t1;Parent=MS.gene051487.t1

Gene Sequence

>MS.gene051487

ATGAAGTTTATGAAGTTGGGTTCGAAGCCTGATGCACTTCAATCTGATGGCAAATTTATCAGGTTAGTTTTATGTTCTTCTCTTCTCTTCTCTTTTGTTTTTTTTTTCTTTCTTGTTTTCTATTAATAACTTTACTTTCTTGTTTCTTTAGTTCTTCTATTTCATGTGTTTTTTTTTTCTTTTTCTGTACTGTTGGTGTTTTCTTACAGTTAAATAGTAGTTAAATGTGTGCTAGTTTGTTTTTAACTGTTTTTCTGTTACTGAATATAAACTGAAATAGTTTTGGTGTTTGGTGAGTCACTGCCAGTAACCGTTTGAATATTTTTATGTTGCATGTTTGTTATGACAGTAAATCACGGTGAATGACCGTGATTTATTTTCCAGAAACTTTGAGGTGGTTTACCTTGATTCTCACAAACTTATTGTGATACCGAAACATATACAAAGCAATGTTTTAAAAACCAAACATGGTACCGCGTTAGGTTGCCGGAATCACGGTGGCTAGCAGTGATTTTGCAAAAGCTTTAAGGTGATTCGTCGTGATTCTGACAATCATTGTGATGCAAAACATGCACAAAACATTGTTTTAAAAACCGAACCTAGCAGACATCCTATTGAAGCACAGACACTCCTTGGATTAGTCATGTCCCAGTGTCGGTCGTGTCCAACATCGACACATATTAGTGGTGTCGGCGTCTCAGTGTCGTCTCCGGTGTCCGTATCCGTATTTCATAGCTGGCATCTTTAATGCTGCTATTCGAGCATTCAATTTAAGCCTTCAAGAGAAACCCATTTAACTCATTGTATGCAAATTACCACTGAAATAGTTTCAATATATTCTATTTTGTTAAAAAAGAAATTATTATTCTATGTTATTTTTAACTGTAAAGGGAGAAAGAGTCTGAGAGAGAGAGGTAGGTTTAATTGAAGGTGGTCCAGCCTTCAAATTGTGAGTTTCTGGTTGAGCTTGTGGTCCAAACAGTGTGTATGTATAGGTGGTATGGACTGCTCAGCATTTAAAGTCATGATAGTTTGCAAAGTCTTTTATGGAACAAATATTAATCGTTATACTATAATAATAATAATTATTCTTTATATGTTTTTCCTATATATATCATTAGTTTTACTTTTTAGCATGTGAGTTTCACTGGAGTGCTCAGATTATCGCTATCAACTTTTATAATGTGTATAGATTATTTCATAAATATTATGGTTGGTACTTTTCAGCCTGTTAAAAATCATGTGCTACACATGTATTCCACATTTGGTCAGTGTAGTGTACTATTAAATTATTGGATTTGACTCCTCCAAATTAAGTTAAAAAATCAAGAGGGTTATTTCAACACACCAATGCTTTGTTAAGCATGTCTATTATGTAATAAATATCTACTATTGATTAATCCACTAATAATTGTTGATATTAATCATTTTACACTTTAAAAAGCTAGTATTTTGGATGTGCCTGCAGTTAGCCATTTTTGTAGGGTCTGCAAATATTCTTTATCTTATATTATGTGTCTCATTTGTAATATTTTTTTGTTTCCAATCATTTTTTTATGTTAATATAGTTACATTTATTACTTTTTATCAATGTTATCCTTATTTAATAAAATAGCTGCAAGTATATGATGGACAAATAATAAATGATGTATTATTTTGCATTGAAAATTGATATTACTTCTTATGAAGTGTGCGAGACATATAATATGAGACGAAGATAGTACTAATTTTTAAAGATGTTACTTCTTACTTTTTTGTCATTTGATCAAGTTTTGCGTTTGGAACTATTTAGTTGCAGCTAAGATGTACACTAATAGTTTACCACCAGGGTGTAGTGAAAGTAGTTGGTGCGCATGGTATGTGGGGTTAAACCCTGAAGTATTGAGTTTGATTCCTAGTGATAGAAAAATGTAATAGTTTTATTAAAAAATGCAATGGTTTTGTCACACGATGTGATGTATCCATGTGAATGTGGTGAAAAACATGCATCTTAATACCTTTTGGCTGAATTTCAGTTGCTTATTGCGTATTGACTTTGCGCTGTGACTTGAAATTTGCATGCCTACATTGTGTGGGGTAATTGTATTTTGTGATGAAAGCTTAGTCTTCTATCATTCCCCATCTTTCCTTGTATAAGTTACACTTTGTAAACTAAACAATTCATTTCCAATTTATGCAGGTACATATCATCTGAATTAGCTACAGATATTATCATAGCTATTGGTGATGTAAAGTTTGACCTTCACAAGGTGTGTACTTTTTAAGCTTCCTTGTATTAGTTTCCTGTTAAATAAGCAATTCTTCTCCATTGATTTTTACTTCTCATGTGTTGCAGTTCCCTCTACTGTCAAAGAGCAATCGCTTACAGAAGTTGGTGTCAAAGGCTAACGAAGATAATTCAGATGAAATTTACTTGGACGATTTCCCTGGTGGACCCAAGGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTGACTCTGAATGCTTACAATGTTGTGGCTGCTCGATGTGCAGCGGAGTACCTTGAGATGACAGAGGATATTGATAAAGGAAATTTGATTTTTAAAATTGATGTGTTCCTTACATCAAGTATCTTTCGTAGCTGGAAGGATTCTATAATTGTTCTTCAAACTGCTAAATCTCTTCTCCCTTGGTCTGAGGATCTAAAGATAATTGGGAGATGCATAGATTCCATAGCATCAAAAACTTCTGTTGATCCGGCAAACATCACTTGGTCTTACACTTACAACCGAAAATTAACACAGGTCGATAAAGTCGTTGAGGACAAGATAACATTGAAAGAGAGAATTGAGTCTGTTCCGAAGGATTGGTGGGTTGAGGATATATGTGAGCTGGACATTGATCTTTATAAACGCGTAATGATAACGGTGAAATCTAAGGGAAGAATGGACGGTGTTGTGATTGGTGAGGCGCTGAAAACCTATGCTGTTAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCTGATGCTCATGCATGGAGGAACAAATCTCTGGTAGAAACAATTGTGTGTTTATTGCCGTGTGATAACGGTGTTGGTTGTTCCTGTAGTTTCTTGCTGAAACTATTTAAAGTGGCCATACTGGTTGAAGCCGATGAATCATCCAGAGAAGAATTGATGAACAGCATCAGCTTAAAATTGCATGAAGCTTCTGTCAAGGATTTACTGATTCCGGCTAGGTCTCCTGGGATTACTACTTATGATATTGATTTGGTGCAAGATCTTTTGAATCGATACATGACTAACGAAAAGAAAAAGCGTGATATTGAGGTTACAGATATGAAAGATAAAGTATTTGGTGAATCTATTTTAGGGAATAGGGCGATATTGAATCTCGGCAAGTTGGTTGATAGTTATCTTGGAGAAATTGCACATGATCCTAATCTTAGCCTCTCTAGTTTTGTTGATTTGTCAGAGTCAATTCCAGATTTTGCTAGACCAAATCATGACGGTTTGTACAGAGCCATCGATATCTACTTGAAGGTAAGATTTTGCTACCTTGGAGGTGTTTTCACTTCTTTTTCTGTTATATTTTTTGTCTGTGAAGCATTGGCATAGATACAAACTCCTAACATGACACTAACAAAATAACACCTGAAATAATTCGAGAAAATAAATTAATTTAATATAATCAGATGTGCAAATGTCTTCCACAGAAAGTGTCGGTGCTATATATGTTTTTTTTATTACTAGTTTTTGCCTGAACAATGCTTGCACAACTACCAGTATATCACATTTTAGAACACTAGCATTTTTCTATTTCTGCACCAATCTGTTCTTTGTCTTAATAACGTTAATATTTAATAATATTCATTTGCGTGAATCATTTTCAGGAACACCCAAGTTTGACAAAATCTGAAAAGAAGAACATATGTGGACTGATGAATGTCAAGAAATTGACTGCTGATGCATCGGCGCATGCTGCACAGAACGAACGTCTTCCACTTCGAGTTGTAGTGCAGGTTCTGTATTTTGAACAAGTTAGAGCTGCAGCCAGTGCCCGAGCATTTGCTAACAGTCCACACAATCCTCCACATGCCCTAATAAATGGAGACGAGGAATGCGAGAAAACTCTGGGAGTGAGCTGCCATTCCCTCAACAGACAAACAAGTCGTTTGAAGATTAAAGACGATGAGTTTCGTAAGAGTGTGAGATTGGATAAAAAGAGTAGCAAAAATAGCAGAAGTGGCATGCAGTTGTTGCCGTCTCGGTCGAGGAGAATATTTGACAAGTTATGGAATGTTGGTAGTAAAGGGCATGGAGAGAATAGGAGTTCAGAGGCTTCAGGGAGTTCTAATAGTCCAACTTCTGTAGTCCTTGGAGATACAAAATCTTCTGGTTCATCCTTAAGACACAAAAGACATTCTATCTCTTAG

Protein sequence

>MS.gene051487.t1

MKFMKLGSKPDALQSDGKFIRYISSELATDIIIAIGDVKFDLHKFPLLSKSNRLQKLVSKANEDNSDEIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIDKGNLIFKIDVFLTSSIFRSWKDSIIVLQTAKSLLPWSEDLKIIGRCIDSIASKTSVDPANITWSYTYNRKLTQVDKVVEDKITLKERIESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKTYAVRWLPDSVDALVSDAHAWRNKSLVETIVCLLPCDNGVGCSCSFLLKLFKVAILVEADESSREELMNSISLKLHEASVKDLLIPARSPGITTYDIDLVQDLLNRYMTNEKKKRDIEVTDMKDKVFGESILGNRAILNLGKLVDSYLGEIAHDPNLSLSSFVDLSESIPDFARPNHDGLYRAIDIYLKEHPSLTKSEKKNICGLMNVKKLTADASAHAAQNERLPLRVVVQVLYFEQVRAAASARAFANSPHNPPHALINGDEECEKTLGVSCHSLNRQTSRLKIKDDEFRKSVRLDKKSSKNSRSGMQLLPSRSRRIFDKLWNVGSKGHGENRSSEASGSSNSPTSVVLGDTKSSGSSLRHKRHSIS