Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054618.t1 | XP_003603001.1 | 99.6 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 4.70E-130 | 473.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054618.t1 | O22227 | 44.8 | 172 | 82 | 4 | 72 | 235 | 130 | 296 | 3.5e-33 | 143.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054618.t1 | G7J5T6 | 99.6 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 3.4e-130 | 473.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054473 | MS.gene054618 | 0.806771 | 7.00E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene056191 | 0.812555 | 4.00E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene058484 | 0.810784 | 9.70E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene059228 | 0.809331 | 1.99E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene06037 | 0.839266 | 1.76E-57 | -1.69E-46 |
| MS.gene054618 | MS.gene061049 | 0.818434 | 1.96E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene061284 | 0.800756 | 1.24E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene061679 | 0.817776 | 2.77E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene061788 | 0.82947 | 5.06E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene062853 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene062882 | 0.819307 | 1.24E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene062883 | 0.825275 | 5.12E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene065137 | 0.825178 | 5.40E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene065138 | 0.826173 | 3.14E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene067755 | 0.824567 | 7.53E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene068614 | 0.812144 | 4.91E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene070876 | 0.800182 | 1.62E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene072196 | 0.806762 | 7.03E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene072897 | 0.806527 | 7.88E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene073926 | 0.81062 | 1.05E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene09574 | 0.80727 | 5.49E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene20275 | 0.802982 | 4.33E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene20612 | 0.809293 | 2.03E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene20988 | 0.811246 | 7.71E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene21053 | 0.829507 | 4.95E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene23009 | 0.827688 | 1.36E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene23372 | 0.810526 | 1.10E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene23887 | 0.815143 | 1.07E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene23923 | 0.809388 | 1.94E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene25859 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene27217 | 0.839799 | 1.28E-57 | -1.69E-46 |
| MS.gene054618 | MS.gene27725 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene28067 | 0.814362 | 1.60E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene29146 | 0.829366 | 5.36E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene29785 | 0.814459 | 1.52E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene32626 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene32736 | 0.835549 | 1.57E-56 | -1.69E-46 |
| MS.gene054618 | MS.gene33115 | 0.81221 | 4.76E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene33514 | 0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene33873 | 0.800302 | 1.54E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene35480 | 0.850445 | 1.69E-60 | -1.69E-46 |
| MS.gene054618 | MS.gene36648 | 0.80151 | 8.70E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene37213 | 0.804184 | 2.44E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene38740 | 0.927902 | 6.14E-92 | -1.69E-46 |
| MS.gene054618 | MS.gene39912 | 0.800212 | 1.60E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene40751 | 0.828361 | 9.39E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene42660 | 0.832405 | 9.63E-56 | -1.69E-46 |
| MS.gene054618 | MS.gene43899 | 0.820344 | 7.21E-53 | -1.69E-46 |
| MS.gene054618 | MS.gene44274 | 0.805056 | 1.61E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene45085 | 0.815494 | 8.98E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene48257 | 0.806704 | 7.23E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene48796 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene50575 | 0.8146 | 1.42E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene50651 | 0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene52238 | 0.831116 | 2.00E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene54055 | 0.817852 | 2.66E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene54407 | 0.802924 | 4.45E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene54700 | 0.812124 | 4.96E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene55695 | 0.806438 | 8.23E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene55769 | 0.810043 | 1.40E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene57299 | 0.823424 | 1.40E-53 | -1.69E-46 |
| MS.gene054618 | MS.gene58270 | 0.808295 | 3.32E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene59730 | 0.806607 | 7.58E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene61507 | 0.805466 | 1.32E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene62419 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene62594 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene62645 | 0.834958 | 2.22E-56 | -1.69E-46 |
| MS.gene054618 | MS.gene64424 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene64426 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene65851 | 0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene66736 | 0.83071 | 2.52E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene68338 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene68393 | 0.800164 | 1.64E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene69083 | 0.814382 | 1.58E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene69718 | 0.810869 | 9.30E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene69798 | 0.816849 | 4.47E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene71024 | 0.807028 | 6.17E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene71604 | 0.817895 | 2.60E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene71833 | 0.804974 | 1.67E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene75021 | 0.817364 | 3.43E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene77022 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene80996 | 0.803033 | 4.23E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene82256 | 0.816334 | 5.83E-52 | -1.69E-46 |
| MS.gene054618 | MS.gene86236 | 0.832107 | 1.14E-55 | -1.69E-46 |
| MS.gene054618 | MS.gene86932 | 0.802359 | 5.82E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene88217 | 0.820545 | 6.48E-53 | -1.69E-46 |
| MS.gene054618 | MS.gene88667 | 0.802771 | 4.79E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene90015 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene95539 | 0.805095 | 1.58E-49 | -1.69E-46 |
| MS.gene054618 | MS.gene95864 | 0.822891 | 1.86E-53 | -1.69E-46 |
| MS.gene054618 | MS.gene96206 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene054618 | MS.gene96705 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene054618 | MS.gene96864 | 0.812075 | 5.09E-51 | -1.69E-46 |
| MS.gene054618 | MS.gene98287 | 0.850029 | 2.21E-60 | -1.69E-46 |
| MS.gene054618 | MS.gene98451 | 0.806405 | 8.36E-50 | -1.69E-46 |
| MS.gene054618 | MS.gene99622 | 0.824808 | 6.60E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene99735 | 0.825598 | 4.30E-54 | -1.69E-46 |
| MS.gene054618 | MS.gene99806 | 0.809971 | 1.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054618.t1 | MTR_3g101300 | 99.578 | 237 | 1 | 0 | 1 | 237 | 1 | 237 | 3.73e-180 | 493 |
| MS.gene054618.t1 | MTR_8g040690 | 41.564 | 243 | 120 | 9 | 2 | 236 | 19 | 247 | 2.79e-53 | 172 |
| MS.gene054618.t1 | MTR_3g094830 | 45.098 | 204 | 96 | 7 | 41 | 235 | 62 | 258 | 5.34e-52 | 169 |
| MS.gene054618.t1 | MTR_8g040680 | 43.689 | 206 | 103 | 6 | 36 | 236 | 60 | 257 | 1.95e-51 | 168 |
| MS.gene054618.t1 | MTR_2g054380 | 49.102 | 167 | 76 | 3 | 72 | 235 | 109 | 269 | 2.48e-48 | 160 |
| MS.gene054618.t1 | MTR_4g112370 | 46.821 | 173 | 77 | 6 | 69 | 235 | 96 | 259 | 1.58e-44 | 150 |
| MS.gene054618.t1 | MTR_2g055990 | 45.000 | 180 | 87 | 6 | 60 | 235 | 87 | 258 | 4.22e-43 | 146 |
| MS.gene054618.t1 | MTR_1g053130 | 45.665 | 173 | 79 | 4 | 72 | 235 | 117 | 283 | 2.08e-39 | 137 |
| MS.gene054618.t1 | MTR_3g086740 | 42.458 | 179 | 86 | 7 | 65 | 236 | 75 | 243 | 6.22e-38 | 132 |
| MS.gene054618.t1 | MTR_7g064810 | 41.667 | 180 | 87 | 6 | 60 | 236 | 59 | 223 | 3.16e-35 | 125 |
| MS.gene054618.t1 | MTR_8g089865 | 40.000 | 170 | 89 | 7 | 73 | 236 | 59 | 221 | 3.10e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054618.t1 | AT5G42680 | 61.885 | 244 | 80 | 5 | 1 | 237 | 1 | 238 | 5.50e-101 | 293 |
| MS.gene054618.t1 | AT5G42680 | 61.885 | 244 | 80 | 5 | 1 | 237 | 1 | 238 | 5.50e-101 | 293 |
| MS.gene054618.t1 | AT4G39610 | 46.581 | 234 | 99 | 10 | 20 | 236 | 40 | 264 | 2.40e-58 | 186 |
| MS.gene054618.t1 | AT5G06990 | 43.333 | 240 | 114 | 8 | 8 | 236 | 33 | 261 | 4.56e-54 | 175 |
| MS.gene054618.t1 | AT2G21990 | 47.291 | 203 | 92 | 7 | 41 | 236 | 58 | 252 | 1.32e-53 | 173 |
| MS.gene054618.t1 | AT3G25640 | 50.000 | 172 | 72 | 7 | 73 | 235 | 100 | 266 | 8.87e-49 | 161 |
| MS.gene054618.t1 | AT3G25640 | 50.000 | 172 | 72 | 7 | 73 | 235 | 126 | 292 | 1.65e-48 | 161 |
| MS.gene054618.t1 | AT2G41660 | 44.509 | 173 | 83 | 4 | 71 | 235 | 129 | 296 | 2.22e-44 | 151 |
| MS.gene054618.t1 | AT5G23100 | 42.051 | 195 | 79 | 5 | 69 | 235 | 88 | 276 | 3.33e-40 | 139 |
| MS.gene054618.t1 | AT2G37880 | 43.617 | 188 | 88 | 8 | 55 | 236 | 70 | 245 | 7.82e-40 | 137 |
| MS.gene054618.t1 | AT1G21050 | 41.176 | 170 | 81 | 6 | 73 | 236 | 89 | 245 | 5.97e-36 | 127 |
| MS.gene054618.t1 | AT1G21050 | 41.176 | 170 | 81 | 6 | 73 | 236 | 125 | 281 | 1.06e-35 | 128 |
| MS.gene054618.t1 | AT5G65340 | 40.571 | 175 | 86 | 5 | 72 | 236 | 84 | 250 | 3.72e-32 | 118 |
| MS.gene054618.t1 | AT1G76610 | 38.235 | 170 | 84 | 6 | 70 | 236 | 75 | 226 | 1.22e-29 | 110 |
| MS.gene054618.t1 | AT2G22460 | 36.145 | 166 | 95 | 4 | 71 | 234 | 85 | 241 | 9.32e-26 | 101 |
Find 46 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGATTTGAAAGAGTAAT+TGG | 0.213989 | 3.4:-89196960 | MS.gene054618:CDS |
| TGAAAGAGTAATTGGTTCTA+AGG | 0.266032 | 3.4:-89196952 | MS.gene054618:CDS |
| GAAAAGTTGGGTATTCAATT+AGG | 0.280770 | 3.4:-89197115 | MS.gene054618:CDS |
| AGAGGTGTGTCCATGGGAGC+TGG | 0.305516 | 3.4:-89197047 | MS.gene054618:CDS |
| CCATTATTAATATTATTATC+AGG | 0.336954 | 3.4:+89196903 | None:intergenic |
| GCCACAACAGGAACAATCTT+TGG | 0.337368 | 3.4:-89197341 | MS.gene054618:CDS |
| CCTGATAATAATATTAATAA+TGG | 0.346292 | 3.4:-89196903 | MS.gene054618:CDS |
| TATTGTAATGGAAGAAAAGT+TGG | 0.347703 | 3.4:-89197128 | MS.gene054618:CDS |
| AGTTGTTGGAAGAGTTTGTT+TGG | 0.358226 | 3.4:-89197157 | MS.gene054618:CDS |
| TGCAAAATGGTAGCACTATT+AGG | 0.363693 | 3.4:-89197395 | MS.gene054618:CDS |
| TTCAATTAGGAGGAAACAAA+TGG | 0.393295 | 3.4:-89197102 | MS.gene054618:CDS |
| TACCTCTCATATAAGTCATT+TGG | 0.396969 | 3.4:+89196979 | None:intergenic |
| GTTTGGGCTGTTTATTGTAA+TGG | 0.399156 | 3.4:-89197140 | MS.gene054618:CDS |
| GTTAACATCAGGTTGCAAAA+TGG | 0.412225 | 3.4:-89197408 | MS.gene054618:CDS |
| ACAATCTTTGGTTACAGAAA+AGG | 0.421379 | 3.4:-89197329 | MS.gene054618:CDS |
| CGAAGGAGTGATGCTATTGC+TGG | 0.423322 | 3.4:+89197506 | None:intergenic |
| ATTGTAATGGAAGAAAAGTT+GGG | 0.435261 | 3.4:-89197127 | MS.gene054618:CDS |
| AACGAATAAGAAGAAGTTGT+TGG | 0.437700 | 3.4:-89197171 | MS.gene054618:CDS |
| CTCTTCCCTATGTTAACATC+AGG | 0.442390 | 3.4:-89197419 | MS.gene054618:CDS |
| GAGGTGTGTCCATGGGAGCT+GGG | 0.448845 | 3.4:-89197046 | MS.gene054618:CDS |
| TTCAAAGCACTTGTTAGCAT+TGG | 0.451055 | 3.4:+89197245 | None:intergenic |
| ACCTACCGCATCTGATCATA+AGG | 0.451382 | 3.4:-89197018 | MS.gene054618:CDS |
| TTGCAACCTGATGTTAACAT+AGG | 0.475328 | 3.4:+89197413 | None:intergenic |
| TTAAAAGACAGTGCCACAAC+AGG | 0.477843 | 3.4:-89197353 | MS.gene054618:CDS |
| TCACTCCTTCGCCACACAAC+AGG | 0.500035 | 3.4:-89197494 | MS.gene054618:CDS |
| AATATTAATAATGGTGCTCA+AGG | 0.504970 | 3.4:-89196894 | MS.gene054618:CDS |
| AGGTGTGTCCATGGGAGCTG+GGG | 0.517152 | 3.4:-89197045 | MS.gene054618:CDS |
| AGGTAACACCCCAGCTCCCA+TGG | 0.530725 | 3.4:+89197037 | None:intergenic |
| AAGCGCAACAAATTCTCTGC+AGG | 0.533172 | 3.4:-89197464 | MS.gene054618:CDS |
| TGCAACCTGATGTTAACATA+GGG | 0.538919 | 3.4:+89197414 | None:intergenic |
| GATCGCCTGTTGTGTGGCGA+AGG | 0.553228 | 3.4:+89197489 | None:intergenic |
| TGATATTGTTAGAATCGCGT+TGG | 0.555089 | 3.4:-89197207 | MS.gene054618:CDS |
| GATCATAAGGAAAGTTCTGA+TGG | 0.563793 | 3.4:-89197005 | MS.gene054618:CDS |
| TCAATTAGGAGGAAACAAAT+GGG | 0.565629 | 3.4:-89197101 | MS.gene054618:CDS |
| GCATTTGAGAGGTGTGTCCA+TGG | 0.565962 | 3.4:-89197054 | MS.gene054618:CDS |
| CAAGTTATGCAGCATTTGAG+AGG | 0.568598 | 3.4:-89197065 | MS.gene054618:CDS |
| CATGGACTAGAGTGCACAGA+TGG | 0.570529 | 3.4:+89197545 | None:intergenic |
| CGCAACAAATTCTCTGCAGG+AGG | 0.576933 | 3.4:-89197461 | MS.gene054618:CDS |
| CTCTAGTCCATGCTATACAA+TGG | 0.577403 | 3.4:-89197534 | MS.gene054618:CDS |
| GTTGTTGGAAGAGTTTGTTT+GGG | 0.579676 | 3.4:-89197156 | MS.gene054618:CDS |
| CATTTGAGAGGTGTGTCCAT+GGG | 0.583648 | 3.4:-89197053 | MS.gene054618:CDS |
| AAGTTGGGTATTCAATTAGG+AGG | 0.586438 | 3.4:-89197112 | MS.gene054618:CDS |
| ACCAAAGATTGTTCCTGTTG+TGG | 0.612454 | 3.4:+89197340 | None:intergenic |
| TCCTTATGATCAGATGCGGT+AGG | 0.615081 | 3.4:+89197017 | None:intergenic |
| ACTTTCCTTATGATCAGATG+CGG | 0.640661 | 3.4:+89197013 | None:intergenic |
| GACCAAATGACTTATATGAG+AGG | 0.654037 | 3.4:-89196981 | MS.gene054618:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCATTATTAATATTATTATC+AGG | + | chr3.4:89197505-89197524 | None:intergenic | 15.0% |
| !! | CCTGATAATAATATTAATAA+TGG | - | chr3.4:89197502-89197521 | MS.gene054618:CDS | 15.0% |
| ! | AATATTAATAATGGTGCTCA+AGG | - | chr3.4:89197511-89197530 | MS.gene054618:CDS | 25.0% |
| ! | ACAAAAAAGATACTAAACTC+AGG | + | chr3.4:89197538-89197557 | None:intergenic | 25.0% |
| !! | ATTGTAATGGAAGAAAAGTT+GGG | - | chr3.4:89197278-89197297 | MS.gene054618:CDS | 25.0% |
| !! | TATTGTAATGGAAGAAAAGT+TGG | - | chr3.4:89197277-89197296 | MS.gene054618:CDS | 25.0% |
| AACGAATAAGAAGAAGTTGT+TGG | - | chr3.4:89197234-89197253 | MS.gene054618:CDS | 30.0% | |
| ACAATCTTTGGTTACAGAAA+AGG | - | chr3.4:89197076-89197095 | MS.gene054618:CDS | 30.0% | |
| GAAAAGTTGGGTATTCAATT+AGG | - | chr3.4:89197290-89197309 | MS.gene054618:CDS | 30.0% | |
| GGTAACTCAATGAGAAAAAT+CGG | + | chr3.4:89197142-89197161 | None:intergenic | 30.0% | |
| GGTAGATTTGAAAGAGTAAT+TGG | - | chr3.4:89197445-89197464 | MS.gene054618:CDS | 30.0% | |
| TACCTCTCATATAAGTCATT+TGG | + | chr3.4:89197429-89197448 | None:intergenic | 30.0% | |
| TCAATTAGGAGGAAACAAAT+GGG | - | chr3.4:89197304-89197323 | MS.gene054618:CDS | 30.0% | |
| TTCAATTAGGAGGAAACAAA+TGG | - | chr3.4:89197303-89197322 | MS.gene054618:CDS | 30.0% | |
| ! | TCTTTTAACATAGGCTTTCT+TGG | + | chr3.4:89197040-89197059 | None:intergenic | 30.0% |
| !! | TGAAAGAGTAATTGGTTCTA+AGG | - | chr3.4:89197453-89197472 | MS.gene054618:CDS | 30.0% |
| AAGTTGGGTATTCAATTAGG+AGG | - | chr3.4:89197293-89197312 | MS.gene054618:CDS | 35.0% | |
| ACTTTCCTTATGATCAGATG+CGG | + | chr3.4:89197395-89197414 | None:intergenic | 35.0% | |
| GACCAAATGACTTATATGAG+AGG | - | chr3.4:89197424-89197443 | MS.gene054618:CDS | 35.0% | |
| GTTTGGGCTGTTTATTGTAA+TGG | - | chr3.4:89197265-89197284 | MS.gene054618:CDS | 35.0% | |
| TGATATTGTTAGAATCGCGT+TGG | - | chr3.4:89197198-89197217 | MS.gene054618:CDS | 35.0% | |
| TGCAAAATGGTAGCACTATT+AGG | - | chr3.4:89197010-89197029 | MS.gene054618:CDS | 35.0% | |
| TGCAACCTGATGTTAACATA+GGG | + | chr3.4:89196994-89197013 | None:intergenic | 35.0% | |
| TTGCAACCTGATGTTAACAT+AGG | + | chr3.4:89196995-89197014 | None:intergenic | 35.0% | |
| ! | AGTTGTTGGAAGAGTTTGTT+TGG | - | chr3.4:89197248-89197267 | MS.gene054618:CDS | 35.0% |
| ! | GATCATAAGGAAAGTTCTGA+TGG | - | chr3.4:89197400-89197419 | MS.gene054618:CDS | 35.0% |
| ! | GGATTTTCCATTGTATAGCA+TGG | + | chr3.4:89196881-89196900 | None:intergenic | 35.0% |
| ! | GTTAACATCAGGTTGCAAAA+TGG | - | chr3.4:89196997-89197016 | MS.gene054618:CDS | 35.0% |
| ! | GTTGTTGGAAGAGTTTGTTT+GGG | - | chr3.4:89197249-89197268 | MS.gene054618:CDS | 35.0% |
| ! | TTCAAAGCACTTGTTAGCAT+TGG | + | chr3.4:89197163-89197182 | None:intergenic | 35.0% |
| ACCAAAGATTGTTCCTGTTG+TGG | + | chr3.4:89197068-89197087 | None:intergenic | 40.0% | |
| CAAGTTATGCAGCATTTGAG+AGG | - | chr3.4:89197340-89197359 | MS.gene054618:CDS | 40.0% | |
| CTCTAGTCCATGCTATACAA+TGG | - | chr3.4:89196871-89196890 | MS.gene054618:CDS | 40.0% | |
| CTCTTCCCTATGTTAACATC+AGG | - | chr3.4:89196986-89197005 | MS.gene054618:CDS | 40.0% | |
| TTAAAAGACAGTGCCACAAC+AGG | - | chr3.4:89197052-89197071 | MS.gene054618:CDS | 40.0% | |
| ! | GTGGCACTGTCTTTTAACAT+AGG | + | chr3.4:89197049-89197068 | None:intergenic | 40.0% |
| AAGCGCAACAAATTCTCTGC+AGG | - | chr3.4:89196941-89196960 | MS.gene054618:CDS | 45.0% | |
| ACCTACCGCATCTGATCATA+AGG | - | chr3.4:89197387-89197406 | MS.gene054618:CDS | 45.0% | |
| GCCACAACAGGAACAATCTT+TGG | - | chr3.4:89197064-89197083 | MS.gene054618:CDS | 45.0% | |
| TCCTTATGATCAGATGCGGT+AGG | + | chr3.4:89197391-89197410 | None:intergenic | 45.0% | |
| ! | CATTTGAGAGGTGTGTCCAT+GGG | - | chr3.4:89197352-89197371 | MS.gene054618:CDS | 45.0% |
| CGAAGGAGTGATGCTATTGC+TGG | + | chr3.4:89196902-89196921 | None:intergenic | 50.0% | |
| CGCAACAAATTCTCTGCAGG+AGG | - | chr3.4:89196944-89196963 | MS.gene054618:CDS | 50.0% | |
| ! | GCATTTGAGAGGTGTGTCCA+TGG | - | chr3.4:89197351-89197370 | MS.gene054618:CDS | 50.0% |
| ! | GCTTTTGATCGCCTGTTGTG+TGG | + | chr3.4:89196925-89196944 | None:intergenic | 50.0% |
| !! | CATGGACTAGAGTGCACAGA+TGG | + | chr3.4:89196863-89196882 | None:intergenic | 50.0% |
| TCACTCCTTCGCCACACAAC+AGG | - | chr3.4:89196911-89196930 | MS.gene054618:CDS | 55.0% | |
| AGGTAACACCCCAGCTCCCA+TGG | + | chr3.4:89197371-89197390 | None:intergenic | 60.0% | |
| AGGTGTGTCCATGGGAGCTG+GGG | - | chr3.4:89197360-89197379 | MS.gene054618:CDS | 60.0% | |
| GAGGTGTGTCCATGGGAGCT+GGG | - | chr3.4:89197359-89197378 | MS.gene054618:CDS | 60.0% | |
| GATCGCCTGTTGTGTGGCGA+AGG | + | chr3.4:89196919-89196938 | None:intergenic | 60.0% | |
| ! | AGAGGTGTGTCCATGGGAGC+TGG | - | chr3.4:89197358-89197377 | MS.gene054618:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89196857 | 89197570 | 89196857 | ID=MS.gene054618 |
| chr3.4 | mRNA | 89196857 | 89197570 | 89196857 | ID=MS.gene054618.t1;Parent=MS.gene054618 |
| chr3.4 | exon | 89196857 | 89197570 | 89196857 | ID=MS.gene054618.t1.exon1;Parent=MS.gene054618.t1 |
| chr3.4 | CDS | 89196857 | 89197570 | 89196857 | ID=cds.MS.gene054618.t1;Parent=MS.gene054618.t1 |
| Gene Sequence |
| Protein sequence |
