Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33231.t1 | XP_013468504.1 | 73.5 | 147 | 14 | 1 | 352 | 473 | 77 | 223 | 4.20E-45 | 193 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33231.t1 | Q94AH6 | 66.0 | 106 | 30 | 1 | 481 | 580 | 471 | 576 | 3.5e-32 | 141.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33231.t1 | A0A072VLN9 | 73.5 | 147 | 14 | 1 | 352 | 473 | 77 | 223 | 3.0e-45 | 193.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene33231.t1 | TF | AP2/ERF-ERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene33231 | 0.808356 | 3.22E-50 | -1.69E-46 |
MS.gene051181 | MS.gene33231 | 0.80124 | 9.88E-49 | -1.69E-46 |
MS.gene051198 | MS.gene33231 | 0.809544 | 1.80E-50 | -1.69E-46 |
MS.gene05415 | MS.gene33231 | 0.803679 | 3.11E-49 | -1.69E-46 |
MS.gene054576 | MS.gene33231 | 0.812011 | 5.25E-51 | -1.69E-46 |
MS.gene054991 | MS.gene33231 | 0.801461 | 8.91E-49 | -1.69E-46 |
MS.gene056174 | MS.gene33231 | 0.818506 | 1.89E-52 | -1.69E-46 |
MS.gene059439 | MS.gene33231 | 0.801824 | 7.50E-49 | -1.69E-46 |
MS.gene059584 | MS.gene33231 | 0.802909 | 4.49E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33231.t1 | MTR_1g070015 | 73.469 | 147 | 14 | 1 | 352 | 473 | 77 | 223 | 4.46e-62 | 205 |
MS.gene33231.t1 | MTR_1g070000 | 72.973 | 148 | 14 | 2 | 351 | 472 | 76 | 223 | 1.76e-61 | 204 |
MS.gene33231.t1 | MTR_1g069985 | 63.473 | 167 | 34 | 3 | 331 | 471 | 48 | 213 | 1.25e-58 | 196 |
MS.gene33231.t1 | MTR_4g093270 | 81.481 | 108 | 20 | 0 | 189 | 296 | 55 | 162 | 7.89e-57 | 195 |
MS.gene33231.t1 | MTR_1g070020 | 68.841 | 138 | 17 | 2 | 352 | 463 | 63 | 200 | 1.19e-50 | 174 |
MS.gene33231.t1 | MTR_7g108340 | 89.655 | 87 | 9 | 0 | 497 | 583 | 490 | 576 | 4.93e-44 | 168 |
MS.gene33231.t1 | MTR_1g070035 | 53.039 | 181 | 53 | 5 | 325 | 474 | 42 | 221 | 3.85e-42 | 152 |
MS.gene33231.t1 | MTR_4g093260 | 72.000 | 100 | 28 | 0 | 189 | 288 | 58 | 157 | 6.62e-42 | 161 |
MS.gene33231.t1 | MTR_4g093260 | 72.000 | 100 | 28 | 0 | 189 | 288 | 49 | 148 | 6.81e-42 | 161 |
MS.gene33231.t1 | MTR_4g093510 | 55.944 | 143 | 53 | 3 | 189 | 329 | 58 | 192 | 4.87e-41 | 156 |
MS.gene33231.t1 | MTR_7g406840 | 82.000 | 100 | 2 | 2 | 49 | 132 | 11 | 110 | 1.11e-39 | 150 |
MS.gene33231.t1 | MTR_2g437390 | 80.000 | 85 | 17 | 0 | 499 | 583 | 499 | 583 | 3.53e-37 | 148 |
MS.gene33231.t1 | MTR_4g119413 | 74.713 | 87 | 22 | 0 | 497 | 583 | 499 | 585 | 1.76e-35 | 142 |
MS.gene33231.t1 | MTR_4g119413 | 75.294 | 85 | 21 | 0 | 497 | 581 | 499 | 583 | 5.19e-35 | 140 |
MS.gene33231.t1 | MTR_4g093280 | 67.368 | 95 | 31 | 0 | 201 | 295 | 70 | 164 | 5.22e-35 | 138 |
MS.gene33231.t1 | MTR_1g070045 | 61.111 | 108 | 15 | 2 | 348 | 428 | 53 | 160 | 1.03e-30 | 118 |
MS.gene33231.t1 | MTR_4g054740 | 37.241 | 145 | 55 | 2 | 356 | 464 | 94 | 238 | 7.76e-23 | 98.2 |
MS.gene33231.t1 | MTR_4g054360 | 38.889 | 144 | 50 | 3 | 359 | 464 | 124 | 267 | 8.69e-23 | 99.0 |
MS.gene33231.t1 | MTR_4g093260 | 78.182 | 55 | 12 | 0 | 234 | 288 | 1 | 55 | 1.12e-22 | 102 |
MS.gene33231.t1 | MTR_4g054860 | 39.310 | 145 | 46 | 3 | 361 | 464 | 133 | 276 | 1.26e-22 | 98.6 |
MS.gene33231.t1 | MTR_4g134870 | 52.294 | 109 | 22 | 2 | 375 | 474 | 331 | 418 | 1.40e-22 | 101 |
MS.gene33231.t1 | MTR_1g074370 | 46.377 | 138 | 47 | 1 | 355 | 465 | 69 | 206 | 3.37e-22 | 95.5 |
MS.gene33231.t1 | MTR_1g069940 | 46.897 | 145 | 39 | 3 | 356 | 464 | 92 | 234 | 2.45e-21 | 94.0 |
MS.gene33231.t1 | MTR_1g062970 | 50.505 | 99 | 33 | 2 | 50 | 132 | 77 | 175 | 3.58e-20 | 94.4 |
MS.gene33231.t1 | MTR_3g117990 | 43.689 | 103 | 40 | 2 | 48 | 132 | 30 | 132 | 5.39e-20 | 91.3 |
MS.gene33231.t1 | MTR_7g102840 | 52.525 | 99 | 31 | 2 | 50 | 132 | 74 | 172 | 7.86e-20 | 93.6 |
MS.gene33231.t1 | MTR_1g069945 | 45.517 | 145 | 41 | 3 | 356 | 464 | 98 | 240 | 1.31e-19 | 89.0 |
MS.gene33231.t1 | MTR_3g117990 | 43.689 | 103 | 40 | 2 | 48 | 132 | 30 | 132 | 1.34e-19 | 91.7 |
MS.gene33231.t1 | MTR_3g117990 | 43.689 | 103 | 40 | 2 | 48 | 132 | 30 | 132 | 2.73e-19 | 91.3 |
MS.gene33231.t1 | MTR_7g102870 | 51.000 | 100 | 32 | 3 | 50 | 132 | 75 | 174 | 3.33e-19 | 91.7 |
MS.gene33231.t1 | MTR_7g112720 | 49.000 | 100 | 31 | 2 | 51 | 132 | 44 | 141 | 1.00e-18 | 89.7 |
MS.gene33231.t1 | MTR_2g015040 | 67.308 | 52 | 17 | 0 | 356 | 407 | 60 | 111 | 7.29e-18 | 81.6 |
MS.gene33231.t1 | MTR_7g096830 | 42.568 | 148 | 45 | 4 | 355 | 464 | 94 | 239 | 7.80e-18 | 83.6 |
MS.gene33231.t1 | MTR_4g088005 | 42.529 | 87 | 50 | 0 | 321 | 407 | 19 | 105 | 1.25e-17 | 79.7 |
MS.gene33231.t1 | MTR_1g043350 | 44.295 | 149 | 50 | 3 | 349 | 468 | 72 | 216 | 1.58e-17 | 82.4 |
MS.gene33231.t1 | MTR_2g085330 | 82.979 | 47 | 8 | 0 | 142 | 188 | 142 | 188 | 2.31e-17 | 86.3 |
MS.gene33231.t1 | MTR_7g096780 | 45.455 | 143 | 41 | 4 | 355 | 464 | 81 | 219 | 2.68e-17 | 82.0 |
MS.gene33231.t1 | MTR_2g085330 | 82.979 | 47 | 8 | 0 | 142 | 188 | 207 | 253 | 3.14e-17 | 85.9 |
MS.gene33231.t1 | MTR_7g096700 | 50.617 | 81 | 39 | 1 | 340 | 420 | 1 | 80 | 5.00e-17 | 78.6 |
MS.gene33231.t1 | MTR_1g074230 | 62.264 | 53 | 20 | 0 | 359 | 411 | 19 | 71 | 5.55e-17 | 78.2 |
MS.gene33231.t1 | MTR_7g021010 | 54.286 | 70 | 30 | 2 | 350 | 419 | 3 | 70 | 1.61e-16 | 77.0 |
MS.gene33231.t1 | MTR_1g074310 | 49.254 | 67 | 34 | 0 | 341 | 407 | 3 | 69 | 1.89e-16 | 77.0 |
MS.gene33231.t1 | MTR_7g096750 | 53.623 | 69 | 31 | 1 | 352 | 420 | 13 | 80 | 2.19e-16 | 76.6 |
MS.gene33231.t1 | MTR_1g070070 | 57.377 | 61 | 26 | 0 | 347 | 407 | 9 | 69 | 2.93e-16 | 76.6 |
MS.gene33231.t1 | MTR_8g006815 | 69.388 | 49 | 15 | 0 | 359 | 407 | 96 | 144 | 3.97e-16 | 77.8 |
MS.gene33231.t1 | MTR_2g015050 | 57.143 | 63 | 25 | 1 | 345 | 407 | 122 | 182 | 5.65e-16 | 79.0 |
MS.gene33231.t1 | MTR_8g006840 | 61.111 | 54 | 21 | 0 | 354 | 407 | 120 | 173 | 6.12e-16 | 77.0 |
MS.gene33231.t1 | MTR_1g090290 | 73.469 | 49 | 13 | 0 | 359 | 407 | 113 | 161 | 1.07e-15 | 76.3 |
MS.gene33231.t1 | MTR_7g021010 | 54.412 | 68 | 29 | 2 | 352 | 419 | 44 | 109 | 2.59e-15 | 74.7 |
MS.gene33231.t1 | MTR_1g087750 | 48.980 | 98 | 34 | 2 | 51 | 132 | 58 | 155 | 3.35e-15 | 79.0 |
MS.gene33231.t1 | MTR_4g100380 | 67.347 | 49 | 16 | 0 | 359 | 407 | 145 | 193 | 4.04e-15 | 76.3 |
MS.gene33231.t1 | MTR_1g087750 | 48.980 | 98 | 34 | 2 | 51 | 132 | 58 | 155 | 4.49e-15 | 78.6 |
MS.gene33231.t1 | MTR_1g074250 | 52.239 | 67 | 30 | 2 | 345 | 410 | 5 | 70 | 1.09e-14 | 71.6 |
MS.gene33231.t1 | MTR_7g020980 | 45.161 | 93 | 48 | 3 | 352 | 444 | 44 | 133 | 1.64e-14 | 72.4 |
MS.gene33231.t1 | MTR_4g100420 | 37.391 | 115 | 71 | 1 | 293 | 407 | 92 | 205 | 1.73e-14 | 75.1 |
MS.gene33231.t1 | MTR_4g100450 | 62.264 | 53 | 20 | 0 | 355 | 407 | 150 | 202 | 2.26e-14 | 74.7 |
MS.gene33231.t1 | MTR_1g048610 | 65.306 | 49 | 17 | 0 | 359 | 407 | 89 | 137 | 3.32e-14 | 72.8 |
MS.gene33231.t1 | MTR_2g014300 | 62.963 | 54 | 19 | 1 | 354 | 407 | 10 | 62 | 3.59e-14 | 71.2 |
MS.gene33231.t1 | MTR_7g081805 | 65.306 | 49 | 17 | 0 | 359 | 407 | 61 | 109 | 5.70e-14 | 71.6 |
MS.gene33231.t1 | MTR_7g081815 | 65.306 | 49 | 17 | 0 | 359 | 407 | 61 | 109 | 5.81e-14 | 71.6 |
MS.gene33231.t1 | MTR_8g006825 | 61.224 | 49 | 19 | 0 | 359 | 407 | 96 | 144 | 1.64e-13 | 70.5 |
MS.gene33231.t1 | MTR_7g081795 | 63.265 | 49 | 18 | 0 | 359 | 407 | 60 | 108 | 2.40e-13 | 69.7 |
MS.gene33231.t1 | MTR_4g119270 | 43.750 | 80 | 37 | 2 | 328 | 407 | 29 | 100 | 9.51e-13 | 70.1 |
MS.gene33231.t1 | MTR_8g092460 | 49.275 | 69 | 34 | 1 | 339 | 407 | 125 | 192 | 1.95e-12 | 68.9 |
MS.gene33231.t1 | MTR_7g084370 | 63.265 | 49 | 17 | 1 | 359 | 407 | 42 | 89 | 2.52e-12 | 68.2 |
MS.gene33231.t1 | MTR_2g019260 | 38.318 | 107 | 60 | 2 | 481 | 581 | 523 | 629 | 3.79e-12 | 70.1 |
MS.gene33231.t1 | MTR_2g019260 | 38.318 | 107 | 60 | 2 | 481 | 581 | 523 | 629 | 3.95e-12 | 69.7 |
MS.gene33231.t1 | MTR_4g111915 | 47.458 | 59 | 30 | 1 | 349 | 407 | 43 | 100 | 4.19e-12 | 64.3 |
MS.gene33231.t1 | MTR_7g096810 | 59.259 | 54 | 22 | 0 | 354 | 407 | 8 | 61 | 6.74e-12 | 63.5 |
MS.gene33231.t1 | MTR_2g078680 | 57.143 | 56 | 23 | 1 | 352 | 407 | 24 | 78 | 7.22e-12 | 65.5 |
MS.gene33231.t1 | MTR_3g090760 | 39.167 | 120 | 53 | 6 | 307 | 407 | 42 | 160 | 1.41e-11 | 66.6 |
MS.gene33231.t1 | MTR_1g040430 | 69.048 | 42 | 13 | 0 | 366 | 407 | 118 | 159 | 1.54e-11 | 64.3 |
MS.gene33231.t1 | MTR_8g085960 | 50.909 | 55 | 26 | 1 | 353 | 407 | 19 | 72 | 1.77e-11 | 65.1 |
MS.gene33231.t1 | MTR_2g438180 | 51.613 | 62 | 26 | 1 | 350 | 407 | 1 | 62 | 1.78e-11 | 62.4 |
MS.gene33231.t1 | MTR_1g069960 | 65.306 | 49 | 17 | 0 | 359 | 407 | 27 | 75 | 2.87e-11 | 62.4 |
MS.gene33231.t1 | MTR_4g086220 | 63.265 | 49 | 17 | 1 | 359 | 407 | 96 | 143 | 2.93e-11 | 64.3 |
MS.gene33231.t1 | MTR_4g086160 | 63.265 | 49 | 17 | 1 | 359 | 407 | 96 | 143 | 3.05e-11 | 64.3 |
MS.gene33231.t1 | MTR_4g112490 | 52.632 | 57 | 25 | 2 | 351 | 407 | 46 | 100 | 3.69e-11 | 63.5 |
MS.gene33231.t1 | MTR_2g435590 | 45.070 | 71 | 38 | 1 | 337 | 407 | 74 | 143 | 3.70e-11 | 64.3 |
MS.gene33231.t1 | MTR_4g086190 | 63.265 | 49 | 17 | 1 | 359 | 407 | 96 | 143 | 5.20e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33231.t1 | AT4G02570 | 78.313 | 83 | 18 | 0 | 499 | 581 | 495 | 577 | 2.88e-35 | 142 |
MS.gene33231.t1 | AT4G02570 | 78.313 | 83 | 18 | 0 | 499 | 581 | 495 | 577 | 2.88e-35 | 142 |
MS.gene33231.t1 | AT4G02570 | 78.313 | 83 | 18 | 0 | 499 | 581 | 495 | 577 | 2.88e-35 | 142 |
MS.gene33231.t1 | AT4G02570 | 78.313 | 83 | 18 | 0 | 499 | 581 | 495 | 577 | 2.88e-35 | 142 |
MS.gene33231.t1 | AT1G43140 | 67.857 | 84 | 27 | 0 | 497 | 580 | 476 | 559 | 9.52e-29 | 122 |
MS.gene33231.t1 | AT3G23240 | 45.985 | 137 | 49 | 1 | 358 | 469 | 81 | 217 | 2.90e-28 | 113 |
MS.gene33231.t1 | AT1G02980 | 61.176 | 85 | 33 | 0 | 497 | 581 | 497 | 581 | 3.99e-26 | 114 |
MS.gene33231.t1 | AT1G02980 | 61.176 | 85 | 33 | 0 | 497 | 581 | 497 | 581 | 3.99e-26 | 114 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 2.32e-23 | 101 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 2.34e-23 | 101 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 1.16e-22 | 100 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 2.28e-22 | 100 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 2.39e-22 | 100 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 53 | 150 | 4.17e-22 | 99.8 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 4.60e-22 | 99.8 |
MS.gene33231.t1 | AT5G47900 | 53.061 | 98 | 30 | 2 | 51 | 132 | 59 | 156 | 4.60e-22 | 99.8 |
MS.gene33231.t1 | AT5G47900 | 53.608 | 97 | 29 | 2 | 52 | 132 | 1 | 97 | 5.07e-22 | 99.0 |
MS.gene33231.t1 | AT2G31230 | 37.423 | 163 | 51 | 3 | 353 | 464 | 80 | 242 | 6.75e-21 | 92.8 |
MS.gene33231.t1 | AT5G27730 | 47.959 | 98 | 35 | 2 | 51 | 132 | 50 | 147 | 7.96e-19 | 89.0 |
MS.gene33231.t1 | AT5G27730 | 47.959 | 98 | 35 | 2 | 51 | 132 | 50 | 147 | 1.64e-18 | 88.2 |
MS.gene33231.t1 | AT5G43410 | 66.038 | 53 | 18 | 0 | 355 | 407 | 11 | 63 | 1.72e-18 | 82.4 |
MS.gene33231.t1 | AT5G27730 | 47.959 | 98 | 35 | 2 | 51 | 132 | 50 | 147 | 4.97e-18 | 87.8 |
MS.gene33231.t1 | AT3G23230 | 55.556 | 54 | 24 | 0 | 354 | 407 | 15 | 68 | 1.96e-15 | 73.9 |
MS.gene33231.t1 | AT4G17500 | 69.388 | 49 | 15 | 0 | 359 | 407 | 148 | 196 | 2.10e-15 | 77.4 |
MS.gene33231.t1 | AT5G47220 | 69.388 | 49 | 15 | 0 | 359 | 407 | 117 | 165 | 4.60e-15 | 75.9 |
MS.gene33231.t1 | AT5G51190 | 58.929 | 56 | 23 | 0 | 352 | 407 | 65 | 120 | 4.85e-15 | 75.1 |
MS.gene33231.t1 | AT5G47230 | 62.264 | 53 | 20 | 0 | 355 | 407 | 152 | 204 | 5.80e-15 | 76.6 |
MS.gene33231.t1 | AT4G18450 | 67.347 | 49 | 16 | 0 | 359 | 407 | 110 | 158 | 2.74e-14 | 74.3 |
MS.gene33231.t1 | AT2G44840 | 63.265 | 49 | 18 | 0 | 359 | 407 | 92 | 140 | 3.18e-14 | 72.8 |
MS.gene33231.t1 | AT5G44210 | 47.436 | 78 | 40 | 1 | 330 | 407 | 4 | 80 | 4.74e-14 | 71.6 |
MS.gene33231.t1 | AT4G17490 | 62.264 | 53 | 20 | 0 | 355 | 407 | 133 | 185 | 5.49e-14 | 73.2 |
MS.gene33231.t1 | AT5G61600 | 63.265 | 49 | 18 | 0 | 359 | 407 | 88 | 136 | 6.89e-14 | 72.4 |
MS.gene33231.t1 | AT1G06160 | 36.875 | 160 | 45 | 3 | 358 | 461 | 81 | 240 | 1.00e-13 | 71.6 |
MS.gene33231.t1 | AT5G18560 | 36.458 | 96 | 60 | 1 | 312 | 407 | 8 | 102 | 3.07e-13 | 72.0 |
MS.gene33231.t1 | AT5G13910 | 56.452 | 62 | 25 | 2 | 347 | 407 | 7 | 67 | 3.39e-13 | 69.7 |
MS.gene33231.t1 | AT5G07580 | 63.265 | 49 | 18 | 0 | 359 | 407 | 110 | 158 | 3.53e-13 | 69.3 |
MS.gene33231.t1 | AT2G33710 | 59.259 | 54 | 21 | 1 | 354 | 407 | 65 | 117 | 5.35e-13 | 68.9 |
MS.gene33231.t1 | AT2G33710 | 59.259 | 54 | 21 | 1 | 354 | 407 | 65 | 117 | 8.03e-13 | 68.9 |
MS.gene33231.t1 | AT3G16770 | 42.157 | 102 | 40 | 3 | 306 | 407 | 44 | 126 | 1.13e-12 | 68.9 |
MS.gene33231.t1 | AT1G28160 | 63.265 | 49 | 17 | 1 | 359 | 407 | 39 | 86 | 1.58e-12 | 68.2 |
MS.gene33231.t1 | AT1G28360 | 65.306 | 49 | 16 | 1 | 359 | 407 | 12 | 59 | 4.24e-12 | 65.9 |
MS.gene33231.t1 | AT5G13330 | 41.667 | 96 | 53 | 3 | 325 | 419 | 4 | 97 | 4.62e-12 | 66.2 |
MS.gene33231.t1 | AT3G23220 | 73.469 | 49 | 13 | 0 | 359 | 407 | 14 | 62 | 4.81e-12 | 64.3 |
MS.gene33231.t1 | AT1G04370 | 66.038 | 53 | 18 | 0 | 355 | 407 | 16 | 68 | 1.02e-11 | 63.2 |
MS.gene33231.t1 | AT5G53290 | 38.372 | 86 | 52 | 1 | 322 | 407 | 88 | 172 | 1.26e-11 | 67.0 |
MS.gene33231.t1 | AT5G19790 | 44.286 | 70 | 36 | 2 | 340 | 407 | 1 | 69 | 1.31e-11 | 65.9 |
MS.gene33231.t1 | AT2G47520 | 36.585 | 123 | 71 | 4 | 355 | 474 | 46 | 164 | 1.55e-11 | 63.5 |
MS.gene33231.t1 | AT3G15210 | 53.333 | 60 | 27 | 1 | 348 | 407 | 14 | 72 | 1.88e-11 | 64.7 |
MS.gene33231.t1 | AT4G11140 | 46.835 | 79 | 36 | 3 | 359 | 433 | 87 | 163 | 2.00e-11 | 65.9 |
MS.gene33231.t1 | AT5G61890 | 50.769 | 65 | 30 | 2 | 355 | 419 | 86 | 148 | 3.03e-11 | 64.7 |
MS.gene33231.t1 | AT5G46210 | 37.383 | 107 | 61 | 2 | 481 | 581 | 523 | 629 | 3.17e-11 | 67.0 |
MS.gene33231.t1 | AT1G12890 | 46.667 | 75 | 33 | 2 | 355 | 423 | 17 | 90 | 7.07e-11 | 62.8 |
Find 124 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGCTCATCATACCGGATTT+TGG | 0.172853 | 6.3:-60457523 | MS.gene33231:CDS |
ACCAGCATTATTTAAATTGC+TGG | 0.290268 | 6.3:+60458356 | None:intergenic |
TGCTTTATTATTTACACCTT+TGG | 0.293265 | 6.3:+60455504 | None:intergenic |
CTGTTCTTACCACTGGGTTT+TGG | 0.299336 | 6.3:-60454719 | MS.gene33231:CDS |
TGTGATTTCAGTCCTTTATC+TGG | 0.308734 | 6.3:-60455078 | MS.gene33231:intron |
CACTGATACAAGAGCCTTGA+TGG | 0.321757 | 6.3:-60456361 | MS.gene33231:CDS |
CTCAATGCAGCTTATGATAT+TGG | 0.322014 | 6.3:-60459335 | MS.gene33231:intron |
GTGCAACACCAACAATAAAA+AGG | 0.325231 | 6.3:+60459227 | None:intergenic |
GCGCTTAAGCTTCTTGCATT+AGG | 0.338428 | 6.3:-60458957 | MS.gene33231:intron |
CAATTTAAATAATGCTGGTT+GGG | 0.340860 | 6.3:-60458352 | MS.gene33231:CDS |
TGTGACTATTTGTGGTTTCA+TGG | 0.344896 | 6.3:+60457465 | None:intergenic |
TCCTTTGTAGCTTCTACATC+AGG | 0.362954 | 6.3:+60457161 | None:intergenic |
TTAAGCTAATGATCATCTTA+TGG | 0.364943 | 6.3:-60457543 | MS.gene33231:CDS |
GTTAATTGTCTCAGCCTATC+AGG | 0.366783 | 6.3:-60454431 | MS.gene33231:intron |
AAGACTCCATGGTTTCTAAC+AGG | 0.367139 | 6.3:-60459895 | MS.gene33231:CDS |
AACCTCCATGTGACTATTTG+TGG | 0.367739 | 6.3:+60457457 | None:intergenic |
CCTTACATATATCCACTATA+TGG | 0.373214 | 6.3:-60453652 | MS.gene33231:CDS |
GTGGTTTCATGGAGCGAATA+AGG | 0.377605 | 6.3:+60457476 | None:intergenic |
CGCGTTAGTGATTTGACGTT+CGG | 0.380117 | 6.3:-60458616 | MS.gene33231:CDS |
TTTGAAGCAGATAAGTTTGA+TGG | 0.380747 | 6.3:-60458587 | MS.gene33231:CDS |
TGAGCCTCTGCAGCAGGCAC+TGG | 0.386505 | 6.3:-60458385 | MS.gene33231:CDS |
CTAGGAATTTGCAACATCAT+TGG | 0.386768 | 6.3:-60454478 | MS.gene33231:CDS |
AGTAAACACCTTCCAGATAA+AGG | 0.389171 | 6.3:+60455066 | None:intergenic |
CTCTCCTTTAGTGCAAGTTC+AGG | 0.390146 | 6.3:+60455553 | None:intergenic |
TTCACCTGAACTTGCACTAA+AGG | 0.395952 | 6.3:-60455557 | MS.gene33231:CDS |
ATACATGCATGGCTTTAGAT+TGG | 0.397711 | 6.3:+60460845 | None:intergenic |
TCAGATGTACATACTGGAAT+TGG | 0.401435 | 6.3:-60454753 | MS.gene33231:CDS |
ACAGTAACTGTTCTTACCAC+TGG | 0.407577 | 6.3:-60454726 | MS.gene33231:CDS |
AATCAAAAGTCATCATATAT+AGG | 0.420730 | 6.3:-60455800 | MS.gene33231:CDS |
TTTCCCAGTGCCTGCTGCAG+AGG | 0.426953 | 6.3:+60458381 | None:intergenic |
GTAGCATATTTGATTACAAC+AGG | 0.431273 | 6.3:-60458446 | MS.gene33231:CDS |
GCTAGCAATGAGTTTCTGTA+AGG | 0.438556 | 6.3:+60457348 | None:intergenic |
CAAGAAGAGGAAGAAGGGTT+TGG | 0.446404 | 6.3:-60455727 | MS.gene33231:CDS |
AAATCCCTCACACGCTTTCA+AGG | 0.448634 | 6.3:-60453682 | MS.gene33231:CDS |
CCCAGCAATTTAAATAATGC+TGG | 0.449563 | 6.3:-60458357 | MS.gene33231:CDS |
CAGATTCAGTGGAATCTGTA+AGG | 0.450140 | 6.3:-60456549 | MS.gene33231:CDS |
AAAGGTGTAAATAATAAAGC+AGG | 0.455975 | 6.3:-60455502 | MS.gene33231:CDS |
TTACTATGAGAAAGAGAAAT+GGG | 0.456483 | 6.3:-60455048 | MS.gene33231:CDS |
TTTACTATGAGAAAGAGAAA+TGG | 0.459036 | 6.3:-60455049 | MS.gene33231:CDS |
TCATTACCATGTCTGACATC+AGG | 0.466569 | 6.3:-60457585 | MS.gene33231:CDS |
GAAAACTCAGATGTACATAC+TGG | 0.467001 | 6.3:-60454759 | MS.gene33231:CDS |
TGTCTTGGTGTTAGAAGACT+TGG | 0.468393 | 6.3:-60455452 | MS.gene33231:CDS |
TAAGAAGTTCGTCCAAAATC+CGG | 0.469589 | 6.3:+60457511 | None:intergenic |
GGCTGAGACAATTAACTCAA+TGG | 0.471327 | 6.3:+60454438 | None:intergenic |
GAGAGATATATGAAAGAGAA+TGG | 0.473137 | 6.3:-60457379 | MS.gene33231:CDS |
CAAAACATAGAAAACTGATC+TGG | 0.475892 | 6.3:-60454510 | MS.gene33231:CDS |
ATAGCCTCTTCACTTAGGCT+TGG | 0.478230 | 6.3:+60456505 | None:intergenic |
CCAGCATTATTTAAATTGCT+GGG | 0.479089 | 6.3:+60458357 | None:intergenic |
CTTGCATAGCCTCTTCACTT+AGG | 0.480071 | 6.3:+60456500 | None:intergenic |
ATTTCAGTCCTTTATCTGGA+AGG | 0.490219 | 6.3:-60455074 | MS.gene33231:intron |
ATGATATTGGTGGATGATGC+TGG | 0.492588 | 6.3:-60459322 | MS.gene33231:CDS |
CATATATCCACTATATGGAC+TGG | 0.492691 | 6.3:-60453647 | MS.gene33231:CDS |
CATGGAGGTTAAATAGCTAC+TGG | 0.492701 | 6.3:-60457444 | MS.gene33231:CDS |
CAGTAACTGTTCTTACCACT+GGG | 0.494960 | 6.3:-60454725 | MS.gene33231:CDS |
CATCTTATGGCTCATCATAC+CGG | 0.498653 | 6.3:-60457530 | MS.gene33231:CDS |
TAGTGTTGAGGATGCTACTT+TGG | 0.501654 | 6.3:-60455690 | MS.gene33231:CDS |
AGGTAGCTTATCCTCTTCCT+TGG | 0.503641 | 6.3:-60459875 | MS.gene33231:intron |
CTGACATCAGGTTTCAGCTC+TGG | 0.505719 | 6.3:-60457573 | MS.gene33231:CDS |
GAGCCTCTGCAGCAGGCACT+GGG | 0.509435 | 6.3:-60458384 | MS.gene33231:CDS |
TGGAGTTCAAAGCTGGTGTA+AGG | 0.512869 | 6.3:-60456341 | MS.gene33231:CDS |
GCAATTTAAATAATGCTGGT+TGG | 0.513544 | 6.3:-60458353 | MS.gene33231:CDS |
TTTAACTTCTTCAGATTCAG+TGG | 0.515006 | 6.3:-60456560 | MS.gene33231:CDS |
AGAGATTGAGCCTCTGCAGC+AGG | 0.516193 | 6.3:-60458391 | MS.gene33231:CDS |
CAGGATGGGAATTACCTGAT+AGG | 0.516409 | 6.3:+60454417 | None:intergenic |
ATCAGAGACACAACAAGAAG+AGG | 0.520617 | 6.3:-60455740 | MS.gene33231:CDS |
AATTTAAATAATGCTGGTTG+GGG | 0.523387 | 6.3:-60458351 | MS.gene33231:CDS |
GCTATTGTTAAGCCATTCCA+TGG | 0.525491 | 6.3:+60459271 | None:intergenic |
CCATATAGTGGATATATGTA+AGG | 0.525515 | 6.3:+60453652 | None:intergenic |
AACTCTCCCAGTCCATATAG+TGG | 0.528131 | 6.3:+60453640 | None:intergenic |
TTGAAGCAGATAAGTTTGAT+GGG | 0.529478 | 6.3:-60458586 | MS.gene33231:CDS |
AATCTAAAATACCAAGGAAG+AGG | 0.529855 | 6.3:+60459864 | None:intergenic |
CTCAATCATTCTCCATGGAA+TGG | 0.530428 | 6.3:-60459283 | MS.gene33231:CDS |
AGAGGAAGAAGGGTTTGGCT+TGG | 0.531425 | 6.3:-60455722 | MS.gene33231:CDS |
ACACAACAAGAAGAGGAAGA+AGG | 0.533196 | 6.3:-60455733 | MS.gene33231:CDS |
AAGTTTGATGGGAATACTGC+TGG | 0.534373 | 6.3:-60458575 | MS.gene33231:intron |
CACAACAAGAAGAGGAAGAA+GGG | 0.536520 | 6.3:-60455732 | MS.gene33231:CDS |
TGCTCCACTTGAAGACTCCA+TGG | 0.538936 | 6.3:-60459906 | MS.gene33231:CDS |
ATCAGAGGGATCAAGTGTCT+TGG | 0.547964 | 6.3:-60455467 | MS.gene33231:CDS |
ACCAGCTTTGAACTCCATCA+AGG | 0.549270 | 6.3:+60456347 | None:intergenic |
CATGGAGAATGATTGAGTGC+TGG | 0.551745 | 6.3:+60459289 | None:intergenic |
GCCTTGATGGAGTTCAAAGC+TGG | 0.553968 | 6.3:-60456348 | MS.gene33231:CDS |
TTAAATAATGCTGGTTGGGG+CGG | 0.554035 | 6.3:-60458348 | MS.gene33231:CDS |
CTGATCTGGATTTACTCACT+AGG | 0.556434 | 6.3:-60454496 | MS.gene33231:CDS |
AATGGGAGGAGAATAGAAAG+AGG | 0.556639 | 6.3:-60455031 | MS.gene33231:intron |
TGCTCCAAGCCTAAGTGAAG+AGG | 0.559997 | 6.3:-60456509 | MS.gene33231:CDS |
AAGCTACCTGTTAGAAACCA+TGG | 0.567245 | 6.3:+60459889 | None:intergenic |
GGGCGGTATTTGCTCATCTG+AGG | 0.569217 | 6.3:-60458331 | MS.gene33231:CDS |
TCTGAATCTGCCTTCTGAGA+TGG | 0.575247 | 6.3:-60454676 | MS.gene33231:intron |
AACCTCCTTGAAAGCGTGTG+AGG | 0.583755 | 6.3:+60453677 | None:intergenic |
CAGCACTCAATCATTCTCCA+TGG | 0.586892 | 6.3:-60459288 | MS.gene33231:CDS |
TAGTGATTTGACGTTCGGAG+TGG | 0.588639 | 6.3:-60458611 | MS.gene33231:CDS |
ACAGAAACTCATTGCTAGCA+AGG | 0.589154 | 6.3:-60457344 | MS.gene33231:intron |
GCCTGATGTAGAAGCTACAA+AGG | 0.591942 | 6.3:-60457162 | MS.gene33231:CDS |
AATGCAGCTTATGATATTGG+TGG | 0.594795 | 6.3:-60459332 | MS.gene33231:intron |
ATAAGTGTTTCCCTCCGACC+AGG | 0.598013 | 6.3:-60460824 | MS.gene33231:intron |
TGCACTAGCATTCACATACA+AGG | 0.601313 | 6.3:-60459209 | MS.gene33231:intron |
TATGCTCCTACCATCTCAGA+AGG | 0.602920 | 6.3:+60454666 | None:intergenic |
TGGAACATTTGATAGTGTTG+AGG | 0.606632 | 6.3:-60455702 | MS.gene33231:CDS |
GAAGCTACAAAGGAAACCAT+AGG | 0.607460 | 6.3:-60457152 | MS.gene33231:intron |
AAGAATGATACCTGGTCGGA+GGG | 0.608172 | 6.3:+60460814 | None:intergenic |
TGGACTGGGAGAGTTGCCTC+AGG | 0.611531 | 6.3:-60453632 | MS.gene33231:intron |
ACCTCCTTGAAAGCGTGTGA+GGG | 0.612923 | 6.3:+60453678 | None:intergenic |
CATTGGATGTCAGAGAATTG+CGG | 0.615658 | 6.3:-60458468 | MS.gene33231:intron |
AAGGTGTAAATAATAAAGCA+GGG | 0.624242 | 6.3:-60455501 | MS.gene33231:CDS |
GGGAAACACTTATACATGCA+TGG | 0.624315 | 6.3:+60460834 | None:intergenic |
GAAGAATGATACCTGGTCGG+AGG | 0.625086 | 6.3:+60460813 | None:intergenic |
CAAAGAAAGATGTTATCCAA+AGG | 0.625682 | 6.3:-60455520 | MS.gene33231:CDS |
TTTGTTTCAGGTCAAGTGTG+TGG | 0.629257 | 6.3:-60454563 | MS.gene33231:intron |
CTGAAACCTGATGTCAGACA+TGG | 0.638276 | 6.3:+60457579 | None:intergenic |
GGGAAACAAGATCAATCAGA+GGG | 0.639790 | 6.3:-60455481 | MS.gene33231:CDS |
CTATGAGAAAGAGAAATGGG+AGG | 0.640805 | 6.3:-60455045 | MS.gene33231:CDS |
GAGGAAGAGTAAGAGAGAGA+CGG | 0.641334 | 6.3:-60460874 | MS.gene33231:CDS |
GAAACCATGGAGTCTTCAAG+TGG | 0.642401 | 6.3:+60459902 | None:intergenic |
GTCTTGGTGTTAGAAGACTT+GGG | 0.642890 | 6.3:-60455451 | MS.gene33231:CDS |
ATATATCCACTATATGGACT+GGG | 0.645856 | 6.3:-60453646 | MS.gene33231:CDS |
GAGGAAGAATGATACCTGGT+CGG | 0.651439 | 6.3:+60460810 | None:intergenic |
AGGGAAACAAGATCAATCAG+AGG | 0.654836 | 6.3:-60455482 | MS.gene33231:CDS |
TCTCTCTTACTCTTCCTCAC+CGG | 0.671004 | 6.3:+60460879 | None:intergenic |
TCCCTCACACGCTTTCAAGG+AGG | 0.680366 | 6.3:-60453679 | MS.gene33231:CDS |
TGAAACCACAAATAGTCACA+TGG | 0.694501 | 6.3:-60457462 | MS.gene33231:CDS |
ATGATCATTAGCTTAATGTG+CGG | 0.698885 | 6.3:+60457550 | None:intergenic |
ATATTGGTGGATGATGCTGG+TGG | 0.716550 | 6.3:-60459319 | MS.gene33231:CDS |
AACCACAAATAGTCACATGG+AGG | 0.755899 | 6.3:-60457459 | MS.gene33231:CDS |
GTAGCTTGTCCAAAACCCAG+TGG | 0.767450 | 6.3:+60454710 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 60453549 | 60460910 | 60453549 | ID=MS.gene33231 |
chr6.3 | mRNA | 60453549 | 60460910 | 60453549 | ID=MS.gene33231.t1;Parent=MS.gene33231 |
chr6.3 | exon | 60460825 | 60460910 | 60460825 | ID=MS.gene33231.t1.exon1;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60460825 | 60460910 | 60460825 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60460287 | 60460290 | 60460287 | ID=MS.gene33231.t1.exon2;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60460287 | 60460290 | 60460287 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60459876 | 60459935 | 60459876 | ID=MS.gene33231.t1.exon3;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60459876 | 60459935 | 60459876 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60459210 | 60459347 | 60459210 | ID=MS.gene33231.t1.exon4;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60459210 | 60459347 | 60459210 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60458958 | 60458991 | 60458958 | ID=MS.gene33231.t1.exon5;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60458958 | 60458991 | 60458958 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60458576 | 60458652 | 60458576 | ID=MS.gene33231.t1.exon6;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60458576 | 60458652 | 60458576 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60458314 | 60458475 | 60458314 | ID=MS.gene33231.t1.exon7;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60458314 | 60458475 | 60458314 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60457345 | 60457623 | 60457345 | ID=MS.gene33231.t1.exon8;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60457345 | 60457623 | 60457345 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60457153 | 60457198 | 60457153 | ID=MS.gene33231.t1.exon9;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60457153 | 60457198 | 60457153 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60456487 | 60456586 | 60456487 | ID=MS.gene33231.t1.exon10;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60456487 | 60456586 | 60456487 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60456326 | 60456395 | 60456326 | ID=MS.gene33231.t1.exon11;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60456326 | 60456395 | 60456326 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60455660 | 60455825 | 60455660 | ID=MS.gene33231.t1.exon12;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60455660 | 60455825 | 60455660 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60455377 | 60455586 | 60455377 | ID=MS.gene33231.t1.exon13;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60455377 | 60455586 | 60455377 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60455032 | 60455089 | 60455032 | ID=MS.gene33231.t1.exon14;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60455032 | 60455089 | 60455032 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60454677 | 60454782 | 60454677 | ID=MS.gene33231.t1.exon15;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60454677 | 60454782 | 60454677 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60454432 | 60454575 | 60454432 | ID=MS.gene33231.t1.exon16;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60454432 | 60454575 | 60454432 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60453633 | 60453713 | 60453633 | ID=MS.gene33231.t1.exon17;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60453633 | 60453713 | 60453633 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
chr6.3 | exon | 60453549 | 60453581 | 60453549 | ID=MS.gene33231.t1.exon18;Parent=MS.gene33231.t1 |
chr6.3 | CDS | 60453549 | 60453581 | 60453549 | ID=cds.MS.gene33231.t1;Parent=MS.gene33231.t1 |
Gene Sequence |
Protein sequence |