AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33576


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33576.t1 MTR_1g103690 98.462 325 5 0 1 325 1 325 0.0 636
MS.gene33576.t1 MTR_5g006340 94.462 325 18 0 1 325 1 325 0.0 572
MS.gene33576.t1 MTR_1g081610 88.272 324 38 0 1 324 1 324 0.0 533
MS.gene33576.t1 MTR_4g087490 71.069 318 92 0 8 325 47 364 8.53e-170 476
MS.gene33576.t1 MTR_1g081620 73.209 321 86 0 4 324 3 323 2.09e-165 463
MS.gene33576.t1 MTR_1g081625 73.750 320 84 0 5 324 4 323 8.98e-162 454
MS.gene33576.t1 MTR_4g087510 66.667 318 97 2 8 325 47 355 6.58e-157 443
MS.gene33576.t1 MTR_7g078070 62.342 316 119 0 6 321 59 374 7.20e-144 411
MS.gene33576.t1 MTR_7g078070 62.987 308 114 0 14 321 7 314 1.52e-141 403
MS.gene33576.t1 MTR_7g087110 63.175 315 106 1 7 321 64 368 2.64e-135 389
MS.gene33576.t1 MTR_4g087520 73.704 270 71 0 56 325 1 270 2.52e-133 380
MS.gene33576.t1 MTR_1g081640 70.318 283 84 0 3 285 2 284 5.61e-131 376
MS.gene33576.t1 MTR_7g078070 62.989 281 104 0 41 321 1 281 1.14e-128 369
MS.gene33576.t1 MTR_5g095670 29.462 353 190 6 12 307 48 398 1.24e-42 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33576.t1 AT4G14880 82.132 319 57 0 6 324 3 321 0.0 513
MS.gene33576.t1 AT4G14880 82.132 319 57 0 6 324 3 321 0.0 513
MS.gene33576.t1 AT4G14880 82.132 319 57 0 6 324 3 321 0.0 513
MS.gene33576.t1 AT4G14880 82.132 319 57 0 6 324 3 321 0.0 513
MS.gene33576.t1 AT4G14880 82.132 319 57 0 6 324 3 321 0.0 513
MS.gene33576.t1 AT3G59760 75.157 318 79 0 7 324 112 429 7.83e-165 466
MS.gene33576.t1 AT3G59760 75.157 318 79 0 7 324 112 429 1.43e-164 466
MS.gene33576.t1 AT2G43750 74.845 322 81 0 3 324 70 391 4.92e-164 462
MS.gene33576.t1 AT2G43750 74.845 322 81 0 3 324 70 391 4.92e-164 462
MS.gene33576.t1 AT3G04940 68.827 324 101 0 1 324 1 324 4.11e-157 442
MS.gene33576.t1 AT3G04940 68.827 324 101 0 1 324 1 324 4.11e-157 442
MS.gene33576.t1 AT5G28020 71.340 321 92 0 4 324 3 323 2.25e-155 438
MS.gene33576.t1 AT5G28020 71.340 321 92 0 4 324 3 323 2.25e-155 438
MS.gene33576.t1 AT5G28020 71.340 321 92 0 4 324 3 323 2.25e-155 438
MS.gene33576.t1 AT5G28020 71.340 321 92 0 4 324 3 323 2.25e-155 438
MS.gene33576.t1 AT5G28020 71.340 321 92 0 4 324 3 323 2.25e-155 438
MS.gene33576.t1 AT3G59760 76.207 290 69 0 7 296 112 401 7.97e-150 428
MS.gene33576.t1 AT3G22460 77.407 270 41 1 56 325 1 250 1.19e-149 421
MS.gene33576.t1 AT5G28030 68.847 321 100 0 4 324 3 323 3.05e-146 415
MS.gene33576.t1 AT5G28030 68.847 321 100 0 4 324 3 323 3.05e-146 415
MS.gene33576.t1 AT5G28030 68.847 321 100 0 4 324 3 323 3.05e-146 415
MS.gene33576.t1 AT5G28030 68.847 321 100 0 4 324 3 323 3.05e-146 415
MS.gene33576.t1 AT3G61440 62.179 312 118 0 10 321 51 362 2.53e-136 391
MS.gene33576.t1 AT3G03630 61.875 320 112 1 4 323 95 404 1.62e-131 380
MS.gene33576.t1 AT3G61440 63.534 266 97 0 56 321 1 266 4.30e-118 342
MS.gene33576.t1 AT3G22460 86.188 181 25 0 8 188 8 188 3.81e-113 326
MS.gene33576.t1 AT5G28030 66.935 248 82 0 4 251 3 250 4.01e-112 326
MS.gene33576.t1 AT3G61440 60.687 262 103 0 10 271 51 312 6.75e-110 323
MS.gene33576.t1 AT3G61440 62.500 240 90 0 82 321 2 241 9.35e-104 304
MS.gene33576.t1 AT5G28020 70.042 237 71 0 88 324 1 237 1.12e-103 303
MS.gene33576.t1 AT1G55880 28.453 362 199 8 4 307 36 395 4.12e-39 143
MS.gene33576.t1 AT1G55880 31.250 240 123 5 12 210 44 282 1.57e-32 124

Find 91 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAATAGGCCTTCTTTA+AGG 0.116413 1.3:+71080566 None:intergenic
AGAACCATTCTTCTATCTTT+TGG 0.182076 1.3:-71081672 MS.gene33576:CDS
GCCCCTTTCATTCCCTTTGC+AGG 0.215231 1.3:+71081627 None:intergenic
ATTAAAGATGACCTTGATAT+TGG 0.237083 1.3:+71081306 None:intergenic
TGCTGCCAAACTGGAATTAA+TGG 0.244427 1.3:-71082439 MS.gene33576:CDS
GGGCATCGGATTGGCCTTCT+TGG 0.298899 1.3:-71081754 MS.gene33576:CDS
GATGCATTTGTTAGTGGTAT+AGG 0.323643 1.3:-71081379 MS.gene33576:CDS
ACTCACTTCTGTAACATCTT+TGG 0.326839 1.3:+71082631 None:intergenic
TACAAATAGGCCTTCTTTAA+GGG 0.332946 1.3:+71080567 None:intergenic
TGCCACTTGTTGGCTCAATA+AGG 0.334733 1.3:+71081781 None:intergenic
TTCAAATTGCTGAAGGATAT+AGG 0.362222 1.3:+71081563 None:intergenic
ATATTTCCCAACACCTGTTA+TGG 0.367102 1.3:+71081345 None:intergenic
AAACCACTGGTCCAGAGATA+TGG 0.372068 1.3:-71081423 MS.gene33576:CDS
TGCTCGAGTTGCTGCCAAAC+TGG 0.377214 1.3:-71082448 MS.gene33576:CDS
ATAGATACCTTTGGATTGGC+AGG 0.410843 1.3:+71081537 None:intergenic
AAAGTTGATGCATTTGTTAG+TGG 0.411743 1.3:-71081385 MS.gene33576:CDS
TGCTGAAGGATATAGGCATT+TGG 0.414477 1.3:+71081570 None:intergenic
ATGCCCGTATTGCCACTTGT+TGG 0.417507 1.3:+71081771 None:intergenic
CCTGTGCCTTTCCATATCTC+TGG 0.417592 1.3:+71081412 None:intergenic
AATGATAAGCTTGTAGCCTT+TGG 0.418235 1.3:+71081725 None:intergenic
GGTACTGGTGGTACCATAAC+AGG 0.426966 1.3:-71081358 MS.gene33576:CDS
TTTATATTATGCAGCTGTAT+GGG 0.431643 1.3:-71081198 MS.gene33576:intron
CTTTCAAGACTCATTGAAGC+AGG 0.439398 1.3:+71081696 None:intergenic
GATATAGGCATTTGGAGTCT+TGG 0.449955 1.3:+71081578 None:intergenic
AAGCTTCTTGCCCTTAAAGA+AGG 0.457267 1.3:-71080577 MS.gene33576:CDS
GACAGTACAGGACTTTCAAC+TGG 0.465463 1.3:+71081169 None:intergenic
TGGTTCCATTAATTCCAGTT+TGG 0.469327 1.3:+71082434 None:intergenic
ATCCTCTGTGCTGTTTGAAT+CGG 0.472205 1.3:-71080199 MS.gene33576:CDS
GAATTCATGGTTCAAAAGTC+AGG 0.476630 1.3:+71080157 None:intergenic
TGAGCCAACAAGTGGCAATA+CGG 0.481402 1.3:-71081775 MS.gene33576:CDS
AAGATTCAAGGGATTGGTGC+TGG 0.484894 1.3:-71081030 MS.gene33576:CDS
GCCTTTGGCTGCTGCCAAGA+AGG 0.490662 1.3:+71081740 None:intergenic
GATTGCTGATGCAGAGGAGA+AGG 0.491875 1.3:-71082247 MS.gene33576:CDS
AGGTACCTCTCACCAAAGCT+AGG 0.500820 1.3:+71080222 None:intergenic
ACCATGGCAGTTGAAAGGTC+TGG 0.505654 1.3:-71082659 MS.gene33576:CDS
GTAGATAGATACCTTTGGAT+TGG 0.506283 1.3:+71081533 None:intergenic
TTTGTTAGTGGTATAGGTAC+TGG 0.507290 1.3:-71081373 MS.gene33576:CDS
CTAGGTCCACACAAGATTCA+AGG 0.507556 1.3:-71081042 MS.gene33576:intron
GGGACTAATTACGCCTGGCC+AGG 0.509762 1.3:-71082226 MS.gene33576:intron
TGGCAATACGGGCATCGGAT+TGG 0.510586 1.3:-71081763 MS.gene33576:CDS
CCACACAAGATTCAAGGGAT+TGG 0.512912 1.3:-71081036 MS.gene33576:CDS
GCCTTCTTGGCAGCAGCCAA+AGG 0.516788 1.3:-71081741 MS.gene33576:CDS
TGCTGTTTGAATCGGTGAGA+CGG 0.517705 1.3:-71080191 MS.gene33576:CDS
GTACTGTCCGGAGGAAAGCC+TGG 0.517823 1.3:-71081154 MS.gene33576:intron
TAACAAGTACCAACCTGGCC+AGG 0.519163 1.3:+71082213 None:intergenic
AGAGCAGAATTCCAATATCA+AGG 0.519691 1.3:-71081317 MS.gene33576:intron
TCCAGACCTTTCAACTGCCA+TGG 0.522956 1.3:+71082658 None:intergenic
GAGCCAACAAGTGGCAATAC+GGG 0.523351 1.3:-71081774 MS.gene33576:CDS
ACAAGTGGCAATACGGGCAT+CGG 0.529614 1.3:-71081768 MS.gene33576:CDS
GGCTTTCCTCCGGACAGTAC+AGG 0.535171 1.3:+71081157 None:intergenic
GATCCTGCAAAGGGAATGAA+AGG 0.537784 1.3:-71081630 MS.gene33576:CDS
GTGGTACCATAACAGGTGTT+GGG 0.539844 1.3:-71081351 MS.gene33576:CDS
TAACTAACCAGGCTTTCCTC+CGG 0.540478 1.3:+71081147 None:intergenic
TTTCCATATCTCTGGACCAG+TGG 0.541184 1.3:+71081420 None:intergenic
GGTGGTACCATAACAGGTGT+TGG 0.549091 1.3:-71081352 MS.gene33576:CDS
AGCTCCAAAAGATAGAAGAA+TGG 0.556491 1.3:+71081668 None:intergenic
AAGACTAACGTCCAATACCC+CGG 0.557928 1.3:+71080999 None:intergenic
GTTGAAAGTCCTGTACTGTC+CGG 0.559552 1.3:-71081166 MS.gene33576:CDS
GAGAAGGGACTAATTACGCC+TGG 0.562602 1.3:-71082231 MS.gene33576:CDS
GCTGTTTGAATCGGTGAGAC+GGG 0.567929 1.3:-71080190 MS.gene33576:CDS
CTGAAACCATGGCAGTTGAA+AGG 0.570234 1.3:-71082664 None:intergenic
CATGCTCTAGTGTAAAAGAC+AGG 0.572827 1.3:-71082413 MS.gene33576:intron
GTTCTGACAGATCCTGCAAA+GGG 0.575035 1.3:-71081639 MS.gene33576:CDS
TAGATACCTTTGGATTGGCA+GGG 0.577990 1.3:+71081538 None:intergenic
ATCCTGCAAAGGGAATGAAA+GGG 0.578172 1.3:-71081629 MS.gene33576:CDS
TTATATTATGCAGCTGTATG+GGG 0.582960 1.3:-71081197 MS.gene33576:intron
GTCCTTATTGAGCCAACAAG+TGG 0.589600 1.3:-71081783 MS.gene33576:CDS
CCAGAGATATGGAAAGGCAC+AGG 0.593497 1.3:-71081412 MS.gene33576:CDS
ATTCAAACAGCACAGAGGAT+AGG 0.595881 1.3:+71080202 None:intergenic
AGTATATCTGAATAAAATCA+CGG 0.598658 1.3:-71082481 MS.gene33576:CDS
TATTATGCAGCTGTATGGGG+TGG 0.601015 1.3:-71081194 MS.gene33576:intron
GAGATATGGAAAGGCACAGG+AGG 0.606059 1.3:-71081409 MS.gene33576:CDS
ATTGCTGATGCAGAGGAGAA+GGG 0.608166 1.3:-71082246 MS.gene33576:CDS
TAGTATGATTGCTGATGCAG+AGG 0.611040 1.3:-71082253 MS.gene33576:CDS
TGAAAACCCTGCCAATCCAA+AGG 0.611571 1.3:-71081544 MS.gene33576:intron
AATATCATCTGGAGCTGCTG+CGG 0.615857 1.3:-71080427 MS.gene33576:CDS
TAGGTCCACACAAGATTCAA+GGG 0.617279 1.3:-71081041 MS.gene33576:CDS
AGACTAACGTCCAATACCCC+GGG 0.622216 1.3:+71081000 None:intergenic
TATCTGAATAAAATCACGGA+TGG 0.622319 1.3:-71082477 MS.gene33576:CDS
GGTTCTGACAGATCCTGCAA+AGG 0.622378 1.3:-71081640 MS.gene33576:CDS
CCAATCCCTTGAATCTTGTG+TGG 0.626382 1.3:+71081036 None:intergenic
GGTACCTCTCACCAAAGCTA+GGG 0.626738 1.3:+71080223 None:intergenic
CAGGTGCATTATGAAACCAC+TGG 0.627492 1.3:-71081436 MS.gene33576:CDS
TTTATTCAGATATACTAATG+GGG 0.635434 1.3:+71082488 None:intergenic
GTTAGTGGTATAGGTACTGG+TGG 0.642131 1.3:-71081370 MS.gene33576:CDS
TCCTGCAAAGGGAATGAAAG+GGG 0.649085 1.3:-71081628 MS.gene33576:CDS
AGATATGGAAAGGCACAGGA+GGG 0.656003 1.3:-71081408 MS.gene33576:CDS
ACTGGTCCAGAGATATGGAA+AGG 0.666229 1.3:-71081418 MS.gene33576:CDS
GAAAGTCCTGTACTGTCCGG+AGG 0.670657 1.3:-71081163 MS.gene33576:CDS
GTTTGAATCGGTGAGACGGG+AGG 0.688551 1.3:-71080187 MS.gene33576:CDS
CACCGATTCAAACAGCACAG+AGG 0.761759 1.3:+71080197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATATTGTGAATATC+TGG - chr1.3:71082495-71082514 MS.gene33576:CDS 15.0%
!! ATTTATAACATAAATTGCAA+AGG + chr1.3:71080531-71080550 None:intergenic 15.0%
!! TAAGAAACATTTAATTAGAA+AGG + chr1.3:71080255-71080274 None:intergenic 15.0%
!!! ATTTTATTCAGATATACTAA+TGG + chr1.3:71080334-71080353 None:intergenic 15.0%
!!! TTTTATTCAGATATACTAAT+GGG + chr1.3:71080333-71080352 None:intergenic 15.0%
!! AAACTTTAACAGTAAATGAT+GGG + chr1.3:71082004-71082023 None:intergenic 20.0%
!! AAGATATATTTAGGTATCAA+AGG + chr1.3:71081925-71081944 None:intergenic 20.0%
!! AGTATATCTGAATAAAATCA+CGG - chr1.3:71080336-71080355 MS.gene33576:intron 20.0%
!! GCAATTTATGTTATAAATGT+AGG - chr1.3:71080533-71080552 MS.gene33576:intron 20.0%
!! GGTATGTTATATGAAAAAAA+GGG - chr1.3:71082525-71082544 MS.gene33576:intron 20.0%
!! TAAAACAATATTCATAGTAG+AGG + chr1.3:71082364-71082383 None:intergenic 20.0%
!! TAATTAAATGTTTCTTACTG+TGG - chr1.3:71080258-71080277 MS.gene33576:intron 20.0%
!! TGGTATGTTATATGAAAAAA+AGG - chr1.3:71082524-71082543 MS.gene33576:intron 20.0%
!! TTATGTTATAAATGTAGGAT+TGG - chr1.3:71080538-71080557 MS.gene33576:intron 20.0%
!! TTTATTCAGATATACTAATG+GGG + chr1.3:71080332-71080351 None:intergenic 20.0%
!!! CTCATATATTATTTGAGTTT+TGG - chr1.3:71080454-71080473 MS.gene33576:intron 20.0%
!!! GTTTATTTTGTATAGTTGAT+CGG - chr1.3:71080301-71080320 MS.gene33576:intron 20.0%
!!! TCTACTATGAATATTGTTTT+AGG - chr1.3:71082363-71082382 MS.gene33576:intron 20.0%
! AACTTTAACAGTAAATGATG+GGG + chr1.3:71082003-71082022 None:intergenic 25.0%
! AGATTAAAATGAAAGTTCGT+AGG - chr1.3:71080628-71080647 MS.gene33576:intron 25.0%
! ATACAAACTTATCATGTGAA+TGG - chr1.3:71082100-71082119 MS.gene33576:intron 25.0%
! ATTAAAGATGACCTTGATAT+TGG + chr1.3:71081514-71081533 None:intergenic 25.0%
! CAAAATAAACAACAGACATT+AGG + chr1.3:71080291-71080310 None:intergenic 25.0%
! CAAGTCGTTAAGATATATTT+AGG + chr1.3:71081934-71081953 None:intergenic 25.0%
! CCAAAAAAATTGCAAAATGA+TGG + chr1.3:71082139-71082158 None:intergenic 25.0%
! CTTCAAACTTAATACATGAT+GGG + chr1.3:71081896-71081915 None:intergenic 25.0%
! GAAACTTTAACAGTAAATGA+TGG + chr1.3:71082005-71082024 None:intergenic 25.0%
! GAGAAATACTAGTACTAATT+TGG - chr1.3:71080775-71080794 MS.gene33576:intron 25.0%
! TAAAAGACAGGTAATCATTT+AGG - chr1.3:71080416-71080435 MS.gene33576:CDS 25.0%
! TACAAAAGATTGTGAAATAG+CGG + chr1.3:71080887-71080906 None:intergenic 25.0%
! TACAAACTTATCATGTGAAT+GGG - chr1.3:71082101-71082120 MS.gene33576:intron 25.0%
! TATAAATCTTAGTGTTGTCT+AGG + chr1.3:71081548-71081567 None:intergenic 25.0%
! TCATTTACTGTTAAAGTTTC+TGG - chr1.3:71082005-71082024 MS.gene33576:intron 25.0%
! TCTTCAAACTTAATACATGA+TGG + chr1.3:71081897-71081916 None:intergenic 25.0%
! TGAATACTAGGAAATATGAT+AGG - chr1.3:71080749-71080768 MS.gene33576:intron 25.0%
! TTCAAACTTAATACATGATG+GGG + chr1.3:71081895-71081914 None:intergenic 25.0%
! TTGAAACAAAACGAGAAATT+AGG + chr1.3:71081597-71081616 None:intergenic 25.0%
! TTTATATTATGCAGCTGTAT+GGG - chr1.3:71081619-71081638 MS.gene33576:CDS 25.0%
!! AAGTTCTTATTTCAACTCTA+AGG + chr1.3:71081711-71081730 None:intergenic 25.0%
!! ACTCATTTGTTCTACAATTT+TGG - chr1.3:71081305-71081324 MS.gene33576:intron 25.0%
!! CAACTTTTATGTTGAATACT+AGG - chr1.3:71080737-71080756 MS.gene33576:intron 25.0%
!! CCATCATTTTGCAATTTTTT+TGG - chr1.3:71082136-71082155 MS.gene33576:intron 25.0%
!! TACTATTTTACTGTTGTACT+TGG - chr1.3:71082324-71082343 MS.gene33576:intron 25.0%
!! TTTTATATTATGCAGCTGTA+TGG - chr1.3:71081618-71081637 MS.gene33576:CDS 25.0%
!!! CGACAATTTTCATTTTGATA+TGG - chr1.3:71082558-71082577 MS.gene33576:intron 25.0%
!!! CTATGAATATTGTTTTAGGT+TGG - chr1.3:71082367-71082386 MS.gene33576:intron 25.0%
!!! TCTACAATTTTGGTAGTTAA+TGG - chr1.3:71081315-71081334 MS.gene33576:intron 25.0%
AAAATGAAAGTTCGTAGGAT+TGG - chr1.3:71080633-71080652 MS.gene33576:intron 30.0%
AAACAAAACGAGAAATTAGG+AGG + chr1.3:71081594-71081613 None:intergenic 30.0%
AAACAGTGTTATAACTAACC+AGG + chr1.3:71081684-71081703 None:intergenic 30.0%
AATGAGTAGATAGATACCTT+TGG + chr1.3:71081292-71081311 None:intergenic 30.0%
AGTGTTATCACAGAAAATAG+TGG - chr1.3:71080825-71080844 MS.gene33576:intron 30.0%
ATATATACCAGTGATCAGTT+TGG + chr1.3:71080987-71081006 None:intergenic 30.0%
CACATGATAAGTTTGTATTG+TGG + chr1.3:71082098-71082117 None:intergenic 30.0%
GTTATCATCGTTGTATTTAC+AGG - chr1.3:71081362-71081381 MS.gene33576:CDS 30.0%
GTTTCTTAGTTCATTATCAC+TGG - chr1.3:71080801-71080820 MS.gene33576:intron 30.0%
TAAACCTGATATGTGTGATT+TGG - chr1.3:71082184-71082203 MS.gene33576:intron 30.0%
TACAAATAGGCCTTCTTTAA+GGG + chr1.3:71082253-71082272 None:intergenic 30.0%
TAGTTAATGGTTGACAACTT+TGG - chr1.3:71081328-71081347 MS.gene33576:CDS 30.0%
TATCTGAATAAAATCACGGA+TGG - chr1.3:71080340-71080359 MS.gene33576:intron 30.0%
TATGTAAGATTTAGTAAGCC+AGG + chr1.3:71082063-71082082 None:intergenic 30.0%
TATTTAACCAAACTGATCAC+TGG - chr1.3:71080977-71080996 MS.gene33576:intron 30.0%
TTAACGATGTATAGTTCATC+TGG + chr1.3:71080703-71080722 None:intergenic 30.0%
TTACAAATAGGCCTTCTTTA+AGG + chr1.3:71082254-71082273 None:intergenic 30.0%
TTATATTATGCAGCTGTATG+GGG - chr1.3:71081620-71081639 MS.gene33576:CDS 30.0%
TTCAAATTGCTGAAGGATAT+AGG + chr1.3:71081257-71081276 None:intergenic 30.0%
! AGAACCATTCTTCTATCTTT+TGG - chr1.3:71081145-71081164 MS.gene33576:intron 30.0%
! TTGTACTAAATAGAGCATCA+CGG - chr1.3:71080902-71080921 MS.gene33576:intron 30.0%
!! AAAGTTGATGCATTTGTTAG+TGG - chr1.3:71081432-71081451 MS.gene33576:CDS 30.0%
!! TGGTCTTTTTGCTATCTTAA+TGG + chr1.3:71082422-71082441 None:intergenic 30.0%
!! TTTTCATTTTGATATGGTGC+AGG - chr1.3:71082564-71082583 MS.gene33576:intron 30.0%
!!! TTTTAGGTTGGAATATCATC+TGG - chr1.3:71082379-71082398 MS.gene33576:intron 30.0%
AATGATAAGCTTGTAGCCTT+TGG + chr1.3:71081095-71081114 None:intergenic 35.0%
AATTGCCATGATAAACGTCT+AGG - chr1.3:71081757-71081776 MS.gene33576:CDS 35.0%
ACTCACTTCTGTAACATCTT+TGG + chr1.3:71080189-71080208 None:intergenic 35.0%
AGAGCAGAATTCCAATATCA+AGG - chr1.3:71081500-71081519 MS.gene33576:intron 35.0%
AGCTCCAAAAGATAGAAGAA+TGG + chr1.3:71081152-71081171 None:intergenic 35.0%
ATATTTCCCAACACCTGTTA+TGG + chr1.3:71081475-71081494 None:intergenic 35.0%
ATCTTTAACAAGTACCAACC+TGG + chr1.3:71080612-71080631 None:intergenic 35.0%
CTTAGTGTTGTCTAGGAAAA+AGG + chr1.3:71081541-71081560 None:intergenic 35.0%
GGTATATATGTTGTTGCATG+CGG - chr1.3:71080998-71081017 MS.gene33576:CDS 35.0%
GTAGATAGATACCTTTGGAT+TGG + chr1.3:71081287-71081306 None:intergenic 35.0%
TGGTTCCATTAATTCCAGTT+TGG + chr1.3:71080386-71080405 None:intergenic 35.0%
TTTGTTAGTGGTATAGGTAC+TGG - chr1.3:71081444-71081463 MS.gene33576:intron 35.0%
! ATAAGCTTTCCAGCATTTTC+TGG + chr1.3:71082442-71082461 None:intergenic 35.0%
! CGAGCAACATTCTTTTGAAT+TGG - chr1.3:71080489-71080508 MS.gene33576:intron 35.0%
! GATGCATTTGTTAGTGGTAT+AGG - chr1.3:71081438-71081457 MS.gene33576:intron 35.0%
!!! TCAGTCTACAATTGGCTTTT+TGG + chr1.3:71082037-71082056 None:intergenic 35.0%
AAATTAGGAGGAAAGAGGAG+AGG + chr1.3:71081582-71081601 None:intergenic 40.0%
AAGCTTCTTGCCCTTAAAGA+AGG - chr1.3:71082240-71082259 MS.gene33576:CDS 40.0%
ACGAGAAATTAGGAGGAAAG+AGG + chr1.3:71081587-71081606 None:intergenic 40.0%
ATCCTGCAAAGGGAATGAAA+GGG - chr1.3:71081188-71081207 MS.gene33576:intron 40.0%
ATTCAAACAGCACAGAGGAT+AGG + chr1.3:71082618-71082637 None:intergenic 40.0%
CACGAACGAAGCTTACAAAT+AGG + chr1.3:71082266-71082285 None:intergenic 40.0%
CATGCTCTAGTGTAAAAGAC+AGG - chr1.3:71080404-71080423 MS.gene33576:CDS 40.0%
CCAATTGTAGACTGAAATCC+TGG - chr1.3:71082042-71082061 MS.gene33576:intron 40.0%
CCAGGATTTCAGTCTACAAT+TGG + chr1.3:71082045-71082064 None:intergenic 40.0%
CTTTCAAGACTCATTGAAGC+AGG + chr1.3:71081124-71081143 None:intergenic 40.0%
GCAAAAAGACCAGAAAATGC+TGG - chr1.3:71082430-71082449 MS.gene33576:CDS 40.0%
GCTATAACACTGTTGCATAG+CGG + chr1.3:71080863-71080882 None:intergenic 40.0%
TAGGTCCACACAAGATTCAA+GGG - chr1.3:71081776-71081795 MS.gene33576:CDS 40.0%
TAGTATGATTGCTGATGCAG+AGG - chr1.3:71080564-71080583 MS.gene33576:intron 40.0%
TCTGCCAAATCACACATATC+AGG + chr1.3:71082191-71082210 None:intergenic 40.0%
TGCTGAAGGATATAGGCATT+TGG + chr1.3:71081250-71081269 None:intergenic 40.0%
TGCTGCCAAACTGGAATTAA+TGG - chr1.3:71080378-71080397 MS.gene33576:CDS 40.0%
! CAGGGTTTTCAAATTGCTGA+AGG + chr1.3:71081264-71081283 None:intergenic 40.0%
! CTGTCTTTTACACTAGAGCA+TGG + chr1.3:71080406-71080425 None:intergenic 40.0%
! GATATAGGCATTTGGAGTCT+TGG + chr1.3:71081242-71081261 None:intergenic 40.0%
! TTGTGAATATCTGGCTCAGT+TGG - chr1.3:71082504-71082523 MS.gene33576:CDS 40.0%
!! ATAGATACCTTTGGATTGGC+AGG + chr1.3:71081283-71081302 None:intergenic 40.0%
!! ATCCTCTGTGCTGTTTGAAT+CGG - chr1.3:71082618-71082637 MS.gene33576:intron 40.0%
!! TAGATACCTTTGGATTGGCA+GGG + chr1.3:71081282-71081301 None:intergenic 40.0%
!!! TCTATCTTTTGGAGCTGAGT+TGG - chr1.3:71081156-71081175 MS.gene33576:CDS 40.0%
AAACCACTGGTCCAGAGATA+TGG - chr1.3:71081394-71081413 MS.gene33576:CDS 45.0%
AAGACTAACGTCCAATACCC+CGG + chr1.3:71081821-71081840 None:intergenic 45.0%
ACTGGTCCAGAGATATGGAA+AGG - chr1.3:71081399-71081418 MS.gene33576:CDS 45.0%
ATAGCAGCGCTATTGCTTAG+CGG + chr1.3:71080951-71080970 None:intergenic 45.0%
ATTGCTGATGCAGAGGAGAA+GGG - chr1.3:71080571-71080590 MS.gene33576:CDS 45.0%
CAGGTGCATTATGAAACCAC+TGG - chr1.3:71081381-71081400 MS.gene33576:CDS 45.0%
CCAATCCCTTGAATCTTGTG+TGG + chr1.3:71081784-71081803 None:intergenic 45.0%
CCACACAAGATTCAAGGGAT+TGG - chr1.3:71081781-71081800 MS.gene33576:CDS 45.0%
CTAGGTCCACACAAGATTCA+AGG - chr1.3:71081775-71081794 MS.gene33576:CDS 45.0%
GACAGTACAGGACTTTCAAC+TGG + chr1.3:71081651-71081670 None:intergenic 45.0%
GATCCTGCAAAGGGAATGAA+AGG - chr1.3:71081187-71081206 MS.gene33576:CDS 45.0%
GTCCTTATTGAGCCAACAAG+TGG - chr1.3:71081034-71081053 MS.gene33576:CDS 45.0%
GTGGACCTAGACGTTTATCA+TGG + chr1.3:71081765-71081784 None:intergenic 45.0%
GTGGTACCATAACAGGTGTT+GGG - chr1.3:71081466-71081485 MS.gene33576:intron 45.0%
GTTCTGACAGATCCTGCAAA+GGG - chr1.3:71081178-71081197 MS.gene33576:CDS 45.0%
GTTGAAAGTCCTGTACTGTC+CGG - chr1.3:71081651-71081670 MS.gene33576:CDS 45.0%
TAACTAACCAGGCTTTCCTC+CGG + chr1.3:71081673-71081692 None:intergenic 45.0%
TATTATGCAGCTGTATGGGG+TGG - chr1.3:71081623-71081642 MS.gene33576:CDS 45.0%
TCCTGCAAAGGGAATGAAAG+GGG - chr1.3:71081189-71081208 MS.gene33576:intron 45.0%
TGAAAACCCTGCCAATCCAA+AGG - chr1.3:71081273-71081292 MS.gene33576:intron 45.0%
TGAGCCAACAAGTGGCAATA+CGG - chr1.3:71081042-71081061 MS.gene33576:intron 45.0%
TTTCCATATCTCTGGACCAG+TGG + chr1.3:71081400-71081419 None:intergenic 45.0%
! AAGATTCAAGGGATTGGTGC+TGG - chr1.3:71081787-71081806 MS.gene33576:CDS 45.0%
! AATATCATCTGGAGCTGCTG+CGG - chr1.3:71082390-71082409 MS.gene33576:intron 45.0%
! AGATATGGAAAGGCACAGGA+GGG - chr1.3:71081409-71081428 MS.gene33576:CDS 45.0%
! TGCTGTTTGAATCGGTGAGA+CGG - chr1.3:71082626-71082645 MS.gene33576:intron 45.0%
!! CAGGTTGTTTTCCCTAGCTT+TGG - chr1.3:71082583-71082602 MS.gene33576:intron 45.0%
!! GTTAGTGGTATAGGTACTGG+TGG - chr1.3:71081447-71081466 MS.gene33576:intron 45.0%
!! TGCCACTTGTTGGCTCAATA+AGG + chr1.3:71081039-71081058 None:intergenic 45.0%
!!! ATTGGTGCTGGTTTTGTTCC+CGG - chr1.3:71081799-71081818 MS.gene33576:intron 45.0%
!!! TTTTCCCTAGCTTTGGTGAG+AGG - chr1.3:71082590-71082609 MS.gene33576:intron 45.0%
!!! TATTTTTATCAAATTTTTTA+TGG + chr1.3:71082484-71082503 None:intergenic 5.0%
ACAAGTGGCAATACGGGCAT+CGG - chr1.3:71081049-71081068 MS.gene33576:intron 50.0%
AGACTAACGTCCAATACCCC+GGG + chr1.3:71081820-71081839 None:intergenic 50.0%
AGGTACCTCTCACCAAAGCT+AGG + chr1.3:71082598-71082617 None:intergenic 50.0%
CCTGTGCCTTTCCATATCTC+TGG + chr1.3:71081408-71081427 None:intergenic 50.0%
GAGAAGGGACTAATTACGCC+TGG - chr1.3:71080586-71080605 MS.gene33576:CDS 50.0%
GAGCCAACAAGTGGCAATAC+GGG - chr1.3:71081043-71081062 MS.gene33576:intron 50.0%
GATTGCTGATGCAGAGGAGA+AGG - chr1.3:71080570-71080589 MS.gene33576:CDS 50.0%
GCTGTTTGAATCGGTGAGAC+GGG - chr1.3:71082627-71082646 MS.gene33576:intron 50.0%
GGTACCTCTCACCAAAGCTA+GGG + chr1.3:71082597-71082616 None:intergenic 50.0%
GGTGGTACCATAACAGGTGT+TGG - chr1.3:71081465-71081484 MS.gene33576:intron 50.0%
TAACAAGTACCAACCTGGCC+AGG + chr1.3:71080607-71080626 None:intergenic 50.0%
! ATGCCCGTATTGCCACTTGT+TGG + chr1.3:71081049-71081068 None:intergenic 50.0%
! CCAGAGATATGGAAAGGCAC+AGG - chr1.3:71081405-71081424 MS.gene33576:CDS 50.0%
! GAGATATGGAAAGGCACAGG+AGG - chr1.3:71081408-71081427 MS.gene33576:CDS 50.0%
! GGTTCTGACAGATCCTGCAA+AGG - chr1.3:71081177-71081196 MS.gene33576:CDS 50.0%
!! CACCGATTCAAACAGCACAG+AGG + chr1.3:71082623-71082642 None:intergenic 50.0%
!! GGTACTGGTGGTACCATAAC+AGG - chr1.3:71081459-71081478 MS.gene33576:intron 50.0%
!!! TGGTTTTGTTCCCGGGGTAT+TGG - chr1.3:71081807-71081826 MS.gene33576:intron 50.0%
!!! TTGGTGCTGGTTTTGTTCCC+GGG - chr1.3:71081800-71081819 MS.gene33576:intron 50.0%
CTAATTACGCCTGGCCAGGT+TGG - chr1.3:71080595-71080614 MS.gene33576:CDS 55.0%
GAAAGTCCTGTACTGTCCGG+AGG - chr1.3:71081654-71081673 MS.gene33576:CDS 55.0%
GCCCCTTTCATTCCCTTTGC+AGG + chr1.3:71081193-71081212 None:intergenic 55.0%
GTTTGAATCGGTGAGACGGG+AGG - chr1.3:71082630-71082649 MS.gene33576:intron 55.0%
! TGCTCGAGTTGCTGCCAAAC+TGG - chr1.3:71080369-71080388 MS.gene33576:intron 55.0%
!! TGGCAATACGGGCATCGGAT+TGG - chr1.3:71081054-71081073 MS.gene33576:intron 55.0%
!!! TGGTGCTGGTTTTGTTCCCG+GGG - chr1.3:71081801-71081820 MS.gene33576:intron 55.0%
GCCTTCTTGGCAGCAGCCAA+AGG - chr1.3:71081076-71081095 MS.gene33576:intron 60.0%
GCCTTTGGCTGCTGCCAAGA+AGG + chr1.3:71081080-71081099 None:intergenic 60.0%
GGCTTTCCTCCGGACAGTAC+AGG + chr1.3:71081663-71081682 None:intergenic 60.0%
GGGACTAATTACGCCTGGCC+AGG - chr1.3:71080591-71080610 MS.gene33576:CDS 60.0%
GTACTGTCCGGAGGAAAGCC+TGG - chr1.3:71081663-71081682 MS.gene33576:CDS 60.0%
!! GGGCATCGGATTGGCCTTCT+TGG - chr1.3:71081063-71081082 MS.gene33576:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 71080161 71082678 71080161 ID=MS.gene33576
chr1.3 mRNA 71080161 71082678 71080161 ID=MS.gene33576.t1;Parent=MS.gene33576
chr1.3 exon 71082637 71082678 71082637 ID=MS.gene33576.t1.exon1;Parent=MS.gene33576.t1
chr1.3 CDS 71082637 71082678 71082637 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71082414 71082523 71082414 ID=MS.gene33576.t1.exon2;Parent=MS.gene33576.t1
chr1.3 CDS 71082414 71082523 71082414 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71082227 71082284 71082227 ID=MS.gene33576.t1.exon3;Parent=MS.gene33576.t1
chr1.3 CDS 71082227 71082284 71082227 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71081545 71081808 71081545 ID=MS.gene33576.t1.exon4;Parent=MS.gene33576.t1
chr1.3 CDS 71081545 71081808 71081545 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71081318 71081455 71081318 ID=MS.gene33576.t1.exon5;Parent=MS.gene33576.t1
chr1.3 CDS 71081318 71081455 71081318 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71081155 71081206 71081155 ID=MS.gene33576.t1.exon6;Parent=MS.gene33576.t1
chr1.3 CDS 71081155 71081206 71081155 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71080981 71081060 71080981 ID=MS.gene33576.t1.exon7;Parent=MS.gene33576.t1
chr1.3 CDS 71080981 71081060 71080981 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71080570 71080629 71080570 ID=MS.gene33576.t1.exon8;Parent=MS.gene33576.t1
chr1.3 CDS 71080570 71080629 71080570 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71080374 71080454 71080374 ID=MS.gene33576.t1.exon9;Parent=MS.gene33576.t1
chr1.3 CDS 71080374 71080454 71080374 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
chr1.3 exon 71080161 71080253 71080161 ID=MS.gene33576.t1.exon10;Parent=MS.gene33576.t1
chr1.3 CDS 71080161 71080253 71080161 ID=cds.MS.gene33576.t1;Parent=MS.gene33576.t1
Gene Sequence

>MS.gene33576

ATGGCAGTTGAAAGGTCTGGAATTGCCAAAGATGTTACAGAAGTGAGTTTGTGTATTCTGATGACATTTTGTGTGATATTTTAATGTGTTTCCTTTCTAATTAAATGTTTCTTACTGTGGATTACATCCTAATGTCTGTTGTTTATTTTGTATAGTTGATCGGAAAAACCCCATTAGTATATCTGAATAAAATCACGGATGGTTCTGTTGCTCGAGTTGCTGCCAAACTGGAATTAATGGAACCATGCTCTAGTGTAAAAGACAGGTAATCATTTAGGTTTCTTACAATAGTGCTCATATATTATTTGAGTTTTGGTTCTTGCTTTTGCGAGCAACATTCTTTTGAATTGGCTTGTGACTTTTTTCGCCTTTGCAATTTATGTTATAAATGTAGGATTGGCTATAGTATGATTGCTGATGCAGAGGAGAAGGGACTAATTACGCCTGGCCAGGTTGGTACTTGTTAAAGATTAAAATGAAAGTTCGTAGGATTGGTCATTGAAAGTGATGCTTCTAACAAATTAGCAGTTGTTTAAATTCCAGATGAACTATACATCGTTAATTTAGTTTCTGCGACAACTTTTATGTTGAATACTAGGAAATATGATAGGTGAGAGAAATACTAGTACTAATTTGGTGTGTTTCTTAGTTCATTATCACTGGCAGTGTTATCACAGAAAATAGTGGTTTGTTCAAATTCCGCTATGCAACAGTGTTATAGCGCCGCTATTTCACAATCTTTTGTACTAAATAGAGCATCACGGAACAATAGCACTTCGTTCAAATTCCGCTAAGCAATAGCGCTGCTATAGCTATTATTTAACCAAACTGATCACTGGTATATATGTTGTTGCATGCGGACTATTGAAGAGTGTCCTTATTGAGCCAACAAGTGGCAATACGGGCATCGGATTGGCCTTCTTGGCAGCAGCCAAAGGCTACAAGCTTATCATTACAATGCCTGCTTCAATGAGTCTTGAAAGAAGAACCATTCTTCTATCTTTTGGAGCTGAGTTGGTTCTGACAGATCCTGCAAAGGGAATGAAAGGGGCAGTTCAGAAAGCTGAAGAGATATTAGCCAAGACTCCAAATGCCTATATCCTTCAGCAATTTGAAAACCCTGCCAATCCAAAGGTATCTATCTACTCATTTGTTCTACAATTTTGGTAGTTAATGGTTGACAACTTTGGATGACACATTTGTTATCATCGTTGTATTTACAGGTGCATTATGAAACCACTGGTCCAGAGATATGGAAAGGCACAGGAGGGAAAGTTGATGCATTTGTTAGTGGTATAGGTACTGGTGGTACCATAACAGGTGTTGGGAAATATCTTAAAGAGCAGAATTCCAATATCAAGGTCATCTTTAATTTTTCCTTTTTCCTAGACAACACTAAGATTTATAGCTGTAGTTATCCTCTCCTCTTTCCTCCTAATTTCTCGTTTTGTTTCAATTTTTATATTATGCAGCTGTATGGGGTGGAGCCAGTTGAAAGTCCTGTACTGTCCGGAGGAAAGCCTGGTTAGTTATAACACTGTTTTGTTCCTTAGAGTTGAAATAAGAACTTACTTTTGAAGCTGTTGTTGATGTGCAAATTGCCATGATAAACGTCTAGGTCCACACAAGATTCAAGGGATTGGTGCTGGTTTTGTTCCCGGGGTATTGGACGTTAGTCTTGTCGACGAAGTAATTCAAGTAAGTTTTAATGTTTTTTGAATAATCATAATGCCCCATCATGTATTAAGTTTGAAGATATAGCCTTTGATACCTAAATATATCTTAACGACTTGACTTTTAGTTTTATTTTAGTTTTATGTTTTTTGAATAATCATAATGCCCCATCATTTACTGTTAAAGTTTCTGGAGAATGCCAAAAAGCCAATTGTAGACTGAAATCCTGGCTTACTAAATCTTACATACTGACTAATGTACCACAATACAAACTTATCATGTGAATGGGTTATGATCATGTCCATCATTTTGCAATTTTTTTGGACATCTCTGACAATTTATAATTTGTTAAACCTGATATGTGTGATTTGGCAGATATCAAGTGATGAAGCAATAGAAACTGCAAAGCTTCTTGCCCTTAAAGAAGGCCTATTTGTAAGCTTCGTTCGTGATTATATTCAAATTTGTTAAACAGATAAGAAATGATTCTACTATTTTACTGTTGTACTTGGATTAATTTGTTGAGCCTCTACTATGAATATTGTTTTAGGTTGGAATATCATCTGGAGCTGCTGCGGCAGCTGCCATTAAGATAGCAAAAAGACCAGAAAATGCTGGAAAGCTTATTGTTGTAAGTTGATTGAATCCATAAAAAATTTGATAAAAATATTGTGAATATCTGGCTCAGTTGGTATGTTATATGAAAAAAAGGGTTTACATCATCGACAATTTTCATTTTGATATGGTGCAGGTTGTTTTCCCTAGCTTTGGTGAGAGGTACCTATCCTCTGTGCTGTTTGAATCGGTGAGACGGGAGGCTGAAAGCCTGACTTTTGAACCATGA

Protein sequence

>MS.gene33576.t1

MAVERSGIAKDVTELIGKTPLVYLNKITDGSVARVAAKLELMEPCSSVKDRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFLAAAKGYKLIITMPASMSLERRTILLSFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGVGKYLKEQNSNIKLYGVEPVESPVLSGGKPGPHKIQGIGAGFVPGVLDVSLVDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENAGKLIVVVFPSFGERYLSSVLFESVRREAESLTFEP