AlfalfaGEDB | MS.gene33974

M. sativa cultivar XinJiangDaYe / MS.gene33974

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00498.29 PF13638.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33974.t1	RHN81552.1	96.1	1125	40	2	54	1175	54	1177	0.00E+00	1899.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33974.t1	B7SY83	44.5	272	109	8	918	1161	1183	1440	5.4e-50	201.4
MS.gene33974.t1	B7SY83	51.3	78	38	0	54	131	66	143	3.0e-16	89.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33974.t1	G7I9P5	96.1	1125	40	2	54	1175	54	1177	0.0e+00	1899.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049989	MS.gene33974	0.829357	5.39E-55	-1.69E-46
MS.gene050297	MS.gene33974	0.806979	6.32E-50	-1.69E-46
MS.gene052367	MS.gene33974	0.818893	1.55E-52	-1.69E-46
MS.gene053416	MS.gene33974	0.814403	1.57E-51	-1.69E-46
MS.gene053417	MS.gene33974	0.81813	2.30E-52	-1.69E-46
MS.gene056041	MS.gene33974	0.829492	4.99E-55	-1.69E-46
MS.gene056042	MS.gene33974	0.803393	3.56E-49	-1.69E-46
MS.gene056526	MS.gene33974	0.822925	1.83E-53	-1.69E-46
MS.gene058196	MS.gene33974	0.819437	1.16E-52	-1.69E-46
MS.gene058197	MS.gene33974	0.808827	2.56E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33974.t1	MTR_1g096000	96.095	1178	42	2	1	1175	1	1177	0.0	2197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33974.t1	AT1G34355	34.055	508	235	18	697	1161	990	1440	7.31e-55	210
MS.gene33974.t1	AT1G34355	46.774	124	55	2	19	131	20	143	2.49e-27	121
MS.gene33974.t1	AT1G34355	34.055	508	235	18	697	1161	985	1435	8.81e-55	210
MS.gene33974.t1	AT1G34355	46.774	124	55	2	19	131	20	143	2.62e-27	121
MS.gene33974.t1	AT1G34355	34.055	508	235	18	697	1161	831	1281	1.20e-54	209
MS.gene33974.t1	AT1G34355	46.774	124	55	2	19	131	20	143	2.57e-27	121

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Find 225 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTTAATACTGGGATT+AGG	0.288143	1.4:-74774842	None:intergenic
AAACATATGTATTCCAGTTG+CGG	0.592569	1.4:+74776116	MS.gene33974:CDS
AAAGCAATGCATTGAAAATA+TGG	0.230349	1.4:+74776500	MS.gene33974:CDS
AAAGGAAAATAAATGTGACG+TGG	0.686635	1.4:+74776764	MS.gene33974:CDS
AAAGGAAAATGAATGTGATG+AGG	0.600290	1.4:+74777004	MS.gene33974:CDS
AAAGGAAAATGAATGTGATG+AGG	0.600290	1.4:+74777244	MS.gene33974:CDS
AACAGTTAATACTGGGATTA+GGG	0.315056	1.4:-74774841	None:intergenic
AACTAGTGAAGATGTGTTTC+CGG	0.354802	1.4:-74777138	None:intergenic
AAGAGGACGATATTGCAATT+TGG	0.332627	1.4:-74774963	None:intergenic
AAGCAATGCATTGAAAATAT+GGG	0.516136	1.4:+74776501	MS.gene33974:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTTAATACTGGGATT+AGG	-	chr1.4:74774845-74774864	None:intergenic	30.0%
AAACATATGTATTCCAGTTG+CGG	+	chr1.4:74776116-74776135	MS.gene33974:CDS	30.0%
AAAGGAAAATAAATGTGACG+TGG	+	chr1.4:74776764-74776783	MS.gene33974:CDS	30.0%
AAAGGAAAATGAATGTGATG+AGG	+	chr1.4:74777004-74777023	MS.gene33974:CDS	30.0%
AACAGTTAATACTGGGATTA+GGG	-	chr1.4:74774844-74774863	None:intergenic	30.0%
AATGGTGAAAATAAACTCTG+TGG	+	chr1.4:74775961-74775980	MS.gene33974:CDS	30.0%
ACAAATTTAGTGTCAACATC+AGG	-	chr1.4:74777602-74777621	None:intergenic	30.0%
AGAAATGTTCACTCCAAATA+AGG	+	chr1.4:74777697-74777716	MS.gene33974:CDS	30.0%
AGAACTGATTAGTGATTGTA+AGG	-	chr1.4:74778212-74778231	None:intergenic	30.0%
AGATAATTATTTCCCATGAG+AGG	-	chr1.4:74778997-74779016	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	74774792	74779379	74774792	ID=MS.gene33974
chr1.4	mRNA	74774792	74779379	74774792	ID=MS.gene33974.t1;Parent=MS.gene33974
chr1.4	exon	74774792	74775068	74774792	ID=MS.gene33974.t1.exon1;Parent=MS.gene33974.t1
chr1.4	CDS	74774792	74775068	74774792	ID=cds.MS.gene33974.t1;Parent=MS.gene33974.t1
chr1.4	exon	74775187	74775332	74775187	ID=MS.gene33974.t1.exon2;Parent=MS.gene33974.t1
chr1.4	CDS	74775187	74775332	74775187	ID=cds.MS.gene33974.t1;Parent=MS.gene33974.t1
chr1.4	exon	74775859	74778360	74775859	ID=MS.gene33974.t1.exon3;Parent=MS.gene33974.t1
chr1.4	CDS	74775859	74778360	74775859	ID=cds.MS.gene33974.t1;Parent=MS.gene33974.t1
chr1.4	exon	74778461	74778593	74778461	ID=MS.gene33974.t1.exon4;Parent=MS.gene33974.t1
chr1.4	CDS	74778461	74778593	74778461	ID=cds.MS.gene33974.t1;Parent=MS.gene33974.t1
chr1.4	exon	74778695	74778981	74778695	ID=MS.gene33974.t1.exon5;Parent=MS.gene33974.t1
chr1.4	CDS	74778695	74778981	74778695	ID=cds.MS.gene33974.t1;Parent=MS.gene33974.t1
chr1.4	exon	74779197	74779379	74779197	ID=MS.gene33974.t1.exon6;Parent=MS.gene33974.t1
chr1.4	CDS	74779197	74779379	74779197	ID=cds.MS.gene33974.t1;Parent=MS.gene33974.t1

Gene Sequence

>MS.gene33974

ATGGCTTCAATTGTCGTTTCAGACGATAACCCTAATCAACAACAACAATCCCTAATCCCAGTATTAACTGTTTTCAAGAACAATTCAATCCTCAAGAACATCATCATCCTCAACAACAACAACAACAATAACAACAACAACGATGATCAAATCCTCCTCGTTGGTCGACACCCAAATTGCAATATCGTCCTCTTTCACCCTAGCATCAGCCGTTTCCATCTTCAAATTCGAATCAATCCTTCTTCTTGCTCTGTTTCTCTTCTCGATTTATCTTCTGGTATTTCTAAAAAACCGCTTTTTATCTTTTTTTTTTCCTTTCTTTTTTGAATATTCTTTCCTTTTCATTTGTTATTCTTTTTTGGAATCTTGATGGGTTTTTATTGTGTGTGGTACAGTGCATGGAACGTGGGTGTGCGGTAGAAAGCTTGAGCACGGTGTGAGCGTTGATTTGAAGGAAGGGGATAGCTTTCAGCTTGGGAGTTCAAGTAGGGTTTATCTTCTTCAATTTGTATCCCAATTCGATGATGTCGATGCATTAAAGGTACCATTTTTATTTCAAATTTATATTGTTTTGTCACATTTTACATTGTTCTTGCTTTTAATTTCATCATTTCATTTGTTTTTTTATTGTTCATATTTACTCTCTTGTTCAGTTGTGTTCAATTGGAATTTCGTTAGTTGCTTAGGGTGATATGATTATTTTCATTTGTGTTTCTTTTAATTGCTCAATTTTACTCTTTTTTCAATTCTGGGTTTAATTGGAATTGTGTGAATTGTGATAGTTAGGGTGATAATTTTTTTATTAGTGTTTCTTATAATTGTCCATTTTTATTCAATTCGGTTTAATTAGAATTTTGTGAGTTACATAGGATGATGAAATTTTCAGAATTATAAATAGTTTAGTTTTTAAGGTATTGTTGTTTACAAGTTTGAGGAGGAAAGTGGTTTGGTTATTTATTCAGTGATTGTGTTTGTTTCATAAACAATGTTTGATGTTATCTTTGGTTTTTTTTTTGACCAATCTTTGGTTTTTGTTTTTCTCTTTATCTTTTGGCTTTGGCCTACAGAACATTGGTTCTTTAGGTTGTGATGATGAAAGGAAGGACCAGTCTAATGATGAAACATTTGAAGATGAAAATGATTCTTTTGGAACTGAGACATCATGTTGTAATGGTGAAAATAAACTCTGTGGATGTCACTTCTGTTTGCTATCACCACCTTACACGCAATCAGTTGATAACATGCAGATGGGTGAAGCTTGTCCCGAAGTGGAGATGCCGGGAGAGACTAATTTGTTTTGCACATTGAGGGAATGTTTTCAACAAAACATATGTATTCCAGTTGCGGAAGCAGTCCAAGGCTCCAAATTGCACCAACAATCTTCTGCGGAAAAGCAGTTGATTGATCCTGAATCATCCTTCGGGGAAAAAGGCGACGGTGCTGTGGATGAGGTGCCTAAAGAATCTGAATTTGAAGGCACATTAGAATATATTGTAACTACTGGAGCAAGAGTCTTTAATTCTGAGGACGTGCCTTATTCTGAATCTCATCAAACCAATACTGACGAGGAAGTTTCTGTGGATTCACTATCTGATGGAGAAAAAGAAGGTAGTTGCGGTGAAGAGTATGAGTCAGAGTTGCAGAATCTGAATGCTAAATCTTATCACAAGCAACAGTATTCACTGGATGAAATAGTTGAAGATATTGGAAAGCAATGCATTGAAAATATGGGTCCTGCATCTTCTGAAGAAAATGGTGTAGCTGCATTAAGTGTAACACCAAAAGAACACAAATTAGAATCATTCTCTGAAGAAAATGATAGGATTGACGATATTTTAACTAGTGTGGCAAGATTTTTCAATTCTGAAAACACATCTTCACTAGTTGAAGAAACAATTCATCATGTAACCAATTTTCAACAAATCAATACTGTTGAAGAAGTTGCTGCTGCTGATTCGTTATCGGATGAAGAAAAGGAAAATAAATGTGACGTGGAGTTCAAGGCATACCTCAATATCAAACCTTGTGATGAAGAAGGTAACTCACTGGTTGAAACAGTTGAAGAAACTGTGAAATCCTTTCAGACAAAGTCACTTAATCCTGTATCCGAAAACACATATTCACTAGTTGAAGATGCAATTCCTGTAACCAATTTTCAACTAATCAATATTGTTGATGAAGTTGCTACTGTTGATTCGTTATCGGATGAAGAAAAGGAAAATGAATGTGATGAGGAGTTCAAGGCATACCTCTATGTCAAACCTTGTGATGAAGAAGGCAGCTCACTGGATGAAACAGTTGAAGAAACTGTGAAATCCTTTCAGACAGAGTCACTTAATCCTTCATCCGGAAACACATCTTCACTAGTTGAAGAAGCGATTCCTGTAACCAATTTTCAACTAATCAATATTGTTGAAGAAGTTGCTACTGTCGATTCGTTATCAAATGAAGAAAAGGAAAATGAATGTGATGAGGAGTTCAAGGCATACCTCTATGTCAAACCTTGTGATGAAGAAGGTAACTCACTAAATGAAACAGTTGAAGAAACTGTGAAATCCTTTCAGACAGAGTCACTTAATCCTTCAGTGACTCAGGAAACTGATATGGAGATTACAGAGAAGAAAGAGAATCAAACCCTGCAATCTCTTGTTGCTGTGGCTGGATGCTTTGATGTGAAATTCCATGAAAGCTGTGTAGAAGAATCAGTAGAGGGAAGCTTAACCCTTGGTAGTGATATTTTGTCAAGAAGAGATAAGGCTGCGAGTGCACCTCAGGATCGAACTTGGAAGAGCAGATTATTGAACACACCTGATGTTGACACTAAATTTGTAATGAGTAATTTGAAGGATATCAATATCATAAATAAACCAATGCCAAAGAATATTTTCTCTGACTTGGATGAAGAAGAAATGTTCACTCCAAATAAGGAAAACTCAAGCCCCACAAACACCTTTCACTCGCAGTTTATGAGAAAGAAAGGTGTGCTAGAAGAAAGTAAAAGTTCCAAGTCACAAAGGGCACATAATTTGAAGGCTAGTTTTAGTCCCATCATCTATTCAGCTGAAAGAAGTACAAGTGCAATTTCAAACAAAGAGAACCAGACTCCGAAGTCACAAAGGGCACATAATTTGAAGGCTAGTTTTAGTCCCATCATCTATTCAGCTGAAAGAAGTACAAGTGCAATTTCAAACAAAGAGAACCTGACTCCAAGAGAAGCACATGAATGGAAGTCACAAAGATCACATAATTTGAGGGCTAGTTTTAGTCCCATCATCTATTCAGCTGAAAGAAGTGCAAGTGCAATTTCAAACAAAGAGAACCTGACTCCAAAAGAAGCACTAGAATGGATGTCAGGTAGAAAGCCTCTTGAGTGTCGCAATACTATGGAATTAAGAAAGAAGAGAGTGGAACGGATGCCCTTACAATCACTAATCAGTTCTGGAGGCAATCATAATTCAAATTCTAGTCCTTTTTCTTCTAGTCCTTTTTCAGCTGCAAAATCCATTCTTGGTGTCACTGTCAGATCCAGCAATTGTGGACATATTTCAGACAAGCATGCCCAGCCATCTGTAAGATATCACAAATAATATCATTCTGATATAAGATATCACATATTTCTTCTAGTCCTTTTTATATATGCTTATTGCTTACATTCAGTTTTGTTTGCAGCGTATTAGTGCAGAACGAAAGAGGAGCTGGGACTTGGTTGTAGACACTTCTTCTCTTCTGAATAAGGAGTCAAGAAAGGCTTTGCAGCTTCTACAAGGTCTCAAGAGGACTCGTTTAATCATTCCACAATCAGGTACTAATAATGAGTATCATATTCATATGCATTGATTCATTCACTTGTTTGAAATGTTGATGCTTTTGAAATTGGTTCTCAATGACACTTTGTTTTGTCAGTCATAAGAGAATTGGGAAGCATGAAGCAACAAATTGGAATTTTTAGAAGGATTTCAGAGGCTGCTTTGGCCTTGGAATGGATTGAAGAATGCATAGGGAAGACAAAGTGGTGGATTCATATCCAAAGCTCAATGGAGGATGAATTCAGGCTCATTGCTCCAACTCCTCCAACTTATTTTAATGAAGATGTCCTTGATTGTGCTCTTCAATATAGAAGAAAAGATAATGTTGGACAAATTGTCCTTCTTAGTGATGATGTCAACTTGAAAATCAAATCCATGGCAAAGGTATTTCATTACCCTCTCATGGGAAATAATTATCTGCAACCTCTCAATCCATAGCAAACCTCGGCGTTTGGATTAATCTAGCGGTCAAAATTAAATGCAGTCGGCCGCTAGATTAATCCAACAGCCAAAGCTGGGAGGGGTTGCAAAGAATCAAAGTTGGTTTTTCATCTTTTAATAACAATGCTTTCTTACTCTTTTTTTAAAAACTGCTGCAGGGGTTGCTATGTGAGACAGTGCAGCAATTTCGTCATAGTTTAGTGAACCCTTTCTCTGAGAGGTTTATGTGGGCTAACAGCTCTCCTCGAGGACTGACTTGGTCTTGCCGAGATGATGTGGTTTTAAGGGAGAAATATTGCTGTTTGCCATCCAAGGCGGGTTTGAAGCTGCTTGCTACTTAA

Protein sequence

>MS.gene33974.t1

MASIVVSDDNPNQQQQSLIPVLTVFKNNSILKNIIILNNNNNNNNNNDDQILLVGRHPNCNIVLFHPSISRFHLQIRINPSSCSVSLLDLSSVHGTWVCGRKLEHGVSVDLKEGDSFQLGSSSRVYLLQFVSQFDDVDALKNIGSLGCDDERKDQSNDETFEDENDSFGTETSCCNGENKLCGCHFCLLSPPYTQSVDNMQMGEACPEVEMPGETNLFCTLRECFQQNICIPVAEAVQGSKLHQQSSAEKQLIDPESSFGEKGDGAVDEVPKESEFEGTLEYIVTTGARVFNSEDVPYSESHQTNTDEEVSVDSLSDGEKEGSCGEEYESELQNLNAKSYHKQQYSLDEIVEDIGKQCIENMGPASSEENGVAALSVTPKEHKLESFSEENDRIDDILTSVARFFNSENTSSLVEETIHHVTNFQQINTVEEVAAADSLSDEEKENKCDVEFKAYLNIKPCDEEGNSLVETVEETVKSFQTKSLNPVSENTYSLVEDAIPVTNFQLINIVDEVATVDSLSDEEKENECDEEFKAYLYVKPCDEEGSSLDETVEETVKSFQTESLNPSSGNTSSLVEEAIPVTNFQLINIVEEVATVDSLSNEEKENECDEEFKAYLYVKPCDEEGNSLNETVEETVKSFQTESLNPSVTQETDMEITEKKENQTLQSLVAVAGCFDVKFHESCVEESVEGSLTLGSDILSRRDKAASAPQDRTWKSRLLNTPDVDTKFVMSNLKDINIINKPMPKNIFSDLDEEEMFTPNKENSSPTNTFHSQFMRKKGVLEESKSSKSQRAHNLKASFSPIIYSAERSTSAISNKENQTPKSQRAHNLKASFSPIIYSAERSTSAISNKENLTPREAHEWKSQRSHNLRASFSPIIYSAERSASAISNKENLTPKEALEWMSGRKPLECRNTMELRKKRVERMPLQSLISSGGNHNSNSSPFSSSPFSAAKSILGVTVRSSNCGHISDKHAQPSRISAERKRSWDLVVDTSSLLNKESRKALQLLQGLKRTRLIIPQSVIRELGSMKQQIGIFRRISEAALALEWIEECIGKTKWWIHIQSSMEDEFRLIAPTPPTYFNEDVLDCALQYRRKDNVGQIVLLSDDVNLKIKSMAKGLLCETVQQFRHSLVNPFSERFMWANSSPRGLTWSCRDDVVLREKYCCLPSKAGLKLLAT