AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34057.t1 MTR_1g094780 94.973 557 28 0 1 557 166 722 0.0 1110
MS.gene34057.t1 MTR_1g064090 82.585 557 97 0 1 557 156 712 0.0 983
MS.gene34057.t1 MTR_7g101395 81.867 557 101 0 1 557 168 724 0.0 972
MS.gene34057.t1 MTR_7g101425 81.329 557 104 0 1 557 168 724 0.0 965
MS.gene34057.t1 MTR_2g094960 73.750 560 141 3 1 556 140 697 0.0 849
MS.gene34057.t1 MTR_5g098720 70.863 556 161 1 1 556 154 708 0.0 838
MS.gene34057.t1 MTR_2g095010 45.517 145 52 2 384 528 1 118 7.40e-35 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34057.t1 AT2G37040 80.969 557 106 0 1 557 169 725 0.0 978
MS.gene34057.t1 AT3G53260 80.969 557 106 0 1 557 161 717 0.0 976
MS.gene34057.t1 AT3G10340 79.713 557 112 1 1 557 152 707 0.0 954
MS.gene34057.t1 AT5G04230 72.711 557 141 4 1 557 149 694 0.0 839
MS.gene34057.t1 AT5G04230 72.193 561 141 5 1 557 149 698 0.0 833

Find 114 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTGGCCTTCCAATTAAA+AGG 0.205075 1.2:-73551143 None:intergenic
CCTCAAAAGCTCCAATCTTT+TGG 0.213487 1.2:-73552349 None:intergenic
TATTGATGTTTCAAGGAATA+TGG 0.225643 1.2:+73551659 MS.gene34057:CDS
AATTGAGGCTGCTGCTATTA+TGG 0.231999 1.2:+73551443 MS.gene34057:CDS
TTCAGTTCCTAATATGATTA+AGG 0.257592 1.2:+73552439 MS.gene34057:CDS
CTACATTCCTTAATCATATT+AGG 0.268709 1.2:-73552446 None:intergenic
TGCTGACAGGTGAGAAAATT+AGG 0.277184 1.2:+73552516 MS.gene34057:CDS
TCAAAATCTATTGGACCTAA+TGG 0.305142 1.2:+73551165 MS.gene34057:CDS
TGGATCAGGTTTGGCTTCAT+TGG 0.306429 1.2:+73551293 MS.gene34057:CDS
GCATTCAGAACTTGTCCATT+AGG 0.307197 1.2:-73551180 None:intergenic
GCTAGGGTTCAAGTTGAAAA+TGG 0.308466 1.2:+73552410 MS.gene34057:CDS
ACTAGTGCTAAACCTTCTTT+AGG 0.318031 1.2:-73551255 None:intergenic
CAACTAGCTGGAATTGAAAC+TGG 0.324510 1.2:+73551216 MS.gene34057:CDS
TGCTAGCCGCAATCCAAGTT+TGG 0.335095 1.2:+73551833 MS.gene34057:CDS
AACCAAGATGTTAACTCTTT+AGG 0.341255 1.2:+73551960 MS.gene34057:CDS
CGCAATCCAAGTTTGGATTA+CGG 0.346277 1.2:+73551840 MS.gene34057:CDS
AGGCCAAATTCAAAATCTAT+TGG 0.352492 1.2:+73551156 MS.gene34057:CDS
ATTCCTTTAGCATATGTTGC+TGG 0.359407 1.2:+73551120 MS.gene34057:CDS
TGTCTCAGCTTCTGCATTAG+AGG 0.360021 1.2:-73552263 None:intergenic
AGTTCATAAGAGAAACTTTA+GGG 0.361370 1.2:+73552486 MS.gene34057:CDS
TACTGCAGTTGGATCAGGTT+TGG 0.362782 1.2:+73551284 MS.gene34057:CDS
GCAGTGATTGTACCTCTTAA+TGG 0.365126 1.2:-73551084 None:intergenic
ACATTGCTTCAAGGATATTC+AGG 0.370009 1.2:+73550997 MS.gene34057:CDS
AGATGGAAGTTATTATCTTA+AGG 0.370273 1.2:+73551476 MS.gene34057:CDS
TCCTTCTCACAAAACCTTGA+TGG 0.371743 1.2:-73552173 None:intergenic
ATCCACTTATTGATGTTTCA+AGG 0.393519 1.2:+73551652 MS.gene34057:CDS
GTAGCACAATCCTAGCAAAT+AGG 0.399936 1.2:-73552641 None:intergenic
TCAAGGAATATGGCACTTCA+TGG 0.407244 1.2:+73551669 MS.gene34057:CDS
GTTGATCATGCATTGCAAAA+TGG 0.407281 1.2:+73552293 MS.gene34057:CDS
ATCGCGTATCTATCTTGTTT+AGG 0.408011 1.2:-73551537 None:intergenic
TTTCCACCTCTTTAGGCAAA+AGG 0.408359 1.2:-73552385 None:intergenic
AGGAATCAGATTTGAAATCA+TGG 0.416143 1.2:+73551017 MS.gene34057:CDS
TGTGCCAAGCTATTGATCTA+AGG 0.425341 1.2:+73552057 MS.gene34057:CDS
AATGGTACTGCAGTTGGATC+AGG 0.429438 1.2:+73551279 MS.gene34057:CDS
TTCCTTGAAACATCAATAAG+TGG 0.432083 1.2:-73551654 None:intergenic
AAGTTCATAAGAGAAACTTT+AGG 0.433340 1.2:+73552485 MS.gene34057:CDS
CGGCTAGCAGTGAGATTTGA+AGG 0.436480 1.2:-73551819 None:intergenic
GTATTGAAGTTCTGAACAAT+AGG 0.446436 1.2:-73551892 None:intergenic
GAAGACATGGTGTTATGTTA+TGG 0.450134 1.2:-73551062 None:intergenic
CGTTTAGCCATTGCTTCCAT+TGG 0.450648 1.2:+73551738 MS.gene34057:CDS
ACACCATGTCTTCCATTAAG+AGG 0.455708 1.2:+73551072 MS.gene34057:CDS
GTTTCAACTTATGAATCAAA+TGG 0.458671 1.2:-73551407 None:intergenic
AGAGGTACAATCACTGCATC+AGG 0.458933 1.2:+73551090 MS.gene34057:CDS
TGCATTGCAAAATGGTGATA+AGG 0.460091 1.2:+73552301 MS.gene34057:CDS
ATTCTCACAGTTGGTGTCAA+TGG 0.460157 1.2:+73552140 MS.gene34057:CDS
CGAACATCACCGCAGTGGCT+TGG 0.467832 1.2:+73551561 MS.gene34057:CDS
TTGAAGCCGTAATCCAAACT+TGG 0.469165 1.2:-73551846 None:intergenic
GATTTACTCAATGTTGTTGA+AGG 0.472171 1.2:+73552194 MS.gene34057:CDS
TTCCACCTCTTTAGGCAAAA+GGG 0.473173 1.2:-73552384 None:intergenic
TTTGAGTTGCAACCTAAAGA+AGG 0.487825 1.2:+73551243 MS.gene34057:CDS
AGCCTAAAGAGTTAACATCT+TGG 0.498300 1.2:-73551962 None:intergenic
CTAAAGAGGTGGAAAATGCT+AGG 0.500407 1.2:+73552393 MS.gene34057:CDS
TCCCATGTTGGATTGTCTAA+AGG 0.502948 1.2:+73552598 MS.gene34057:CDS
AAATTTACTAGTTGTTCTCT+CGG 0.506721 1.2:+73551329 MS.gene34057:CDS
ATCAAATGGTCAGTGAATTG+AGG 0.509685 1.2:-73551393 None:intergenic
ACCAACTGTGAGAATTCTCT+TGG 0.519185 1.2:-73552132 None:intergenic
AGCAAACATAAGTTTACCAA+TGG 0.521443 1.2:-73551754 None:intergenic
AGTTTGGATTACGGCTTCAA+AGG 0.525060 1.2:+73551849 MS.gene34057:CDS
ACCTGGTGAGGAATGTGATA+AGG 0.527766 1.2:+73552541 MS.gene34057:CDS
CTAGTGAATGGTACTGCAGT+TGG 0.530990 1.2:+73551273 MS.gene34057:CDS
TCTTGTTTAGGCTTCTGAAG+TGG 0.531050 1.2:-73551525 None:intergenic
TTAGGGACAAGTTTGCTGAC+AGG 0.531897 1.2:+73552503 MS.gene34057:CDS
TCTCTTATGAACTTGTACAA+TGG 0.534620 1.2:-73552476 None:intergenic
ACAAGTTCTGAATGCTAAAG+AGG 0.536880 1.2:+73551188 MS.gene34057:CDS
TTAATCATATTAGGAACTGA+AGG 0.538404 1.2:-73552437 None:intergenic
CTTTGAACATGAGTGGTGAC+AGG 0.539854 1.2:-73551924 None:intergenic
GAAGGTTTAGCACTAGTGAA+TGG 0.540506 1.2:+73551261 MS.gene34057:CDS
TGCTCCTCTACCTATTTGCT+AGG 0.540972 1.2:+73552631 MS.gene34057:CDS
ACTTCATCCTGGTCAAATTG+AGG 0.542522 1.2:+73551428 MS.gene34057:CDS
AGAATCAACACATTGCTTCA+AGG 0.544518 1.2:+73550988 MS.gene34057:CDS
CAATCCTAGCAAATAGGTAG+AGG 0.545332 1.2:-73552635 None:intergenic
AGGCCAGCAACATATGCTAA+AGG 0.547360 1.2:-73551123 None:intergenic
TCACAGCATTGTGTGATGGA+AGG 0.547593 1.2:+73552567 MS.gene34057:CDS
ATGGTGAGTTGCATCCATCA+AGG 0.558706 1.2:+73552159 MS.gene34057:CDS
GAAAATTAGGTCACCTGGTG+AGG 0.558787 1.2:+73552529 MS.gene34057:CDS
GCCAAGAGAATTCTCACAGT+TGG 0.559513 1.2:+73552131 MS.gene34057:CDS
AATAAGTGGATTGTCATTCA+CGG 0.561129 1.2:-73551640 None:intergenic
AGAGGGTATGTAGCACTGCA+AGG 0.563580 1.2:-73552245 None:intergenic
AATTTCCAAGGTACACCGAT+TGG 0.566709 1.2:+73551696 MS.gene34057:CDS
AAGGTTTATTGATCCCATGT+TGG 0.570229 1.2:+73552586 MS.gene34057:CDS
ATACACCAATCGGTGTACCT+TGG 0.570750 1.2:-73551701 None:intergenic
TTGGCACAATGCTACTAAGA+AGG 0.573844 1.2:-73552042 None:intergenic
ACGCAACAAAGATGATTGAG+AGG 0.576256 1.2:+73551607 MS.gene34057:CDS
TTATCCATCGATACACCAAT+CGG 0.577310 1.2:-73551711 None:intergenic
TGTGCCTTAGATCAATAGCT+TGG 0.582659 1.2:-73552061 None:intergenic
TAAAGAGGTGGAAAATGCTA+GGG 0.582840 1.2:+73552394 MS.gene34057:CDS
CTCCTTTAGACAATCCAACA+TGG 0.584218 1.2:-73552600 None:intergenic
CATAAGTTGAAACTTCATCC+TGG 0.584696 1.2:+73551417 MS.gene34057:CDS
AAGTTTACCAATGGAAGCAA+TGG 0.586687 1.2:-73551745 None:intergenic
GGTGAGAAAATTAGGTCACC+TGG 0.591426 1.2:+73552524 MS.gene34057:CDS
GTCTCAGCTTCTGCATTAGA+GGG 0.593808 1.2:-73552262 None:intergenic
TAATCATATTAGGAACTGAA+GGG 0.596429 1.2:-73552436 None:intergenic
TATTGATCTAAGGCACATTG+AGG 0.597254 1.2:+73552067 MS.gene34057:CDS
ACCTTATCACATTCCTCACC+AGG 0.598892 1.2:-73552542 None:intergenic
TGTTGGATTGTCTAAAGGAG+TGG 0.600217 1.2:+73552603 MS.gene34057:CDS
CTTCATGGAGGAAATTTCCA+AGG 0.609850 1.2:+73551684 MS.gene34057:CDS
TACACCGATTGGTGTATCGA+TGG 0.610433 1.2:+73551707 MS.gene34057:CDS
GAGGGTATGTAGCACTGCAA+GGG 0.617118 1.2:-73552244 None:intergenic
GTGAATGACATCTATAGCAA+CGG 0.618845 1.2:+73551792 MS.gene34057:CDS
GCACAATGCTACTAAGAAGG+TGG 0.624197 1.2:-73552039 None:intergenic
GTACCTCTTAATGGAAGACA+TGG 0.627273 1.2:-73551075 None:intergenic
CGCAACAAAGATGATTGAGA+GGG 0.628498 1.2:+73551608 MS.gene34057:CDS
GCAGCAGCCTCAATTTGACC+AGG 0.628904 1.2:-73551435 None:intergenic
CGTAATCCAAACTTGGATTG+CGG 0.630042 1.2:-73551839 None:intergenic
CAAAGGAGCAGAAATTGCAA+TGG 0.637084 1.2:+73551866 MS.gene34057:CDS
TCCTTTAGACAATCCAACAT+GGG 0.644402 1.2:-73552599 None:intergenic
TGTCGAATCACTTCAATCTG+CGG 0.647914 1.2:-73551585 None:intergenic
ATTGCAAAATGGTGATAAGG+AGG 0.652869 1.2:+73552304 MS.gene34057:CDS
GAGTGGTGACAGGATTAGCA+AGG 0.667400 1.2:-73551914 None:intergenic
TTCAGCACTTTGAACATGAG+TGG 0.675639 1.2:-73551931 None:intergenic
AGGAATATGGCACTTCATGG+AGG 0.692048 1.2:+73551672 MS.gene34057:CDS
GATTGTCTAAAGGAGTGGAA+TGG 0.692592 1.2:+73552608 MS.gene34057:CDS
CGATTCGAACATCACCGCAG+TGG 0.703444 1.2:+73551556 MS.gene34057:CDS
ATCTGCGGTCCAAGCCACTG+CGG 0.717350 1.2:-73551570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGGAACATATTTTAGA+TGG + chr1.2:73551459-73551478 MS.gene34057:CDS 20.0%
! AAATTTACTAGTTGTTCTCT+CGG + chr1.2:73551329-73551348 MS.gene34057:CDS 25.0%
! AAGTTCATAAGAGAAACTTT+AGG + chr1.2:73552485-73552504 MS.gene34057:CDS 25.0%
! AGATGGAAGTTATTATCTTA+AGG + chr1.2:73551476-73551495 MS.gene34057:CDS 25.0%
! AGTTCATAAGAGAAACTTTA+GGG + chr1.2:73552486-73552505 MS.gene34057:CDS 25.0%
! CTACATTCCTTAATCATATT+AGG - chr1.2:73552449-73552468 None:intergenic 25.0%
! GTTTCAACTTATGAATCAAA+TGG - chr1.2:73551410-73551429 None:intergenic 25.0%
! TAATCATATTAGGAACTGAA+GGG - chr1.2:73552439-73552458 None:intergenic 25.0%
! TATTGATGTTTCAAGGAATA+TGG + chr1.2:73551659-73551678 MS.gene34057:CDS 25.0%
! TTAATCATATTAGGAACTGA+AGG - chr1.2:73552440-73552459 None:intergenic 25.0%
! TTCAGTTCCTAATATGATTA+AGG + chr1.2:73552439-73552458 MS.gene34057:CDS 25.0%
AACCAAGATGTTAACTCTTT+AGG + chr1.2:73551960-73551979 MS.gene34057:CDS 30.0%
AGCAAACATAAGTTTACCAA+TGG - chr1.2:73551757-73551776 None:intergenic 30.0%
AGGCCAAATTCAAAATCTAT+TGG + chr1.2:73551156-73551175 MS.gene34057:CDS 30.0%
ATCCACTTATTGATGTTTCA+AGG + chr1.2:73551652-73551671 MS.gene34057:CDS 30.0%
GATTTACTCAATGTTGTTGA+AGG + chr1.2:73552194-73552213 MS.gene34057:CDS 30.0%
TCAAAATCTATTGGACCTAA+TGG + chr1.2:73551165-73551184 MS.gene34057:CDS 30.0%
TCTCTTATGAACTTGTACAA+TGG - chr1.2:73552479-73552498 None:intergenic 30.0%
TTCCTTGAAACATCAATAAG+TGG - chr1.2:73551657-73551676 None:intergenic 30.0%
! AATTTGGCCTTCCAATTAAA+AGG - chr1.2:73551146-73551165 None:intergenic 30.0%
! AGGAATCAGATTTGAAATCA+TGG + chr1.2:73551017-73551036 MS.gene34057:CDS 30.0%
! GGTCCAATAGATTTTGAATT+TGG - chr1.2:73551162-73551181 None:intergenic 30.0%
!! AATAAGTGGATTGTCATTCA+CGG - chr1.2:73551643-73551662 None:intergenic 30.0%
!! GTATTGAAGTTCTGAACAAT+AGG - chr1.2:73551895-73551914 None:intergenic 30.0%
AAGGTTTATTGATCCCATGT+TGG + chr1.2:73552586-73552605 MS.gene34057:CDS 35.0%
AAGTTTACCAATGGAAGCAA+TGG - chr1.2:73551748-73551767 None:intergenic 35.0%
ACATTGCTTCAAGGATATTC+AGG + chr1.2:73550997-73551016 MS.gene34057:CDS 35.0%
ACTAGTGCTAAACCTTCTTT+AGG - chr1.2:73551258-73551277 None:intergenic 35.0%
AGAATCAACACATTGCTTCA+AGG + chr1.2:73550988-73551007 MS.gene34057:CDS 35.0%
AGCCTAAAGAGTTAACATCT+TGG - chr1.2:73551965-73551984 None:intergenic 35.0%
ATCAAATGGTCAGTGAATTG+AGG - chr1.2:73551396-73551415 None:intergenic 35.0%
ATTCCTTTAGCATATGTTGC+TGG + chr1.2:73551120-73551139 MS.gene34057:CDS 35.0%
ATTGCAAAATGGTGATAAGG+AGG + chr1.2:73552304-73552323 MS.gene34057:CDS 35.0%
GTGAATGACATCTATAGCAA+CGG + chr1.2:73551792-73551811 MS.gene34057:CDS 35.0%
GTTGATCATGCATTGCAAAA+TGG + chr1.2:73552293-73552312 MS.gene34057:CDS 35.0%
TAAAGAGGTGGAAAATGCTA+GGG + chr1.2:73552394-73552413 MS.gene34057:CDS 35.0%
TCCTTTAGACAATCCAACAT+GGG - chr1.2:73552602-73552621 None:intergenic 35.0%
TGCATTGCAAAATGGTGATA+AGG + chr1.2:73552301-73552320 MS.gene34057:CDS 35.0%
TTATCCATCGATACACCAAT+CGG - chr1.2:73551714-73551733 None:intergenic 35.0%
! ACCTCCATTTTCCAAAAGAT+TGG + chr1.2:73552338-73552357 MS.gene34057:CDS 35.0%
! ATCGCGTATCTATCTTGTTT+AGG - chr1.2:73551540-73551559 None:intergenic 35.0%
! CATAAGTTGAAACTTCATCC+TGG + chr1.2:73551417-73551436 MS.gene34057:CDS 35.0%
! TATTGATCTAAGGCACATTG+AGG + chr1.2:73552067-73552086 MS.gene34057:CDS 35.0%
!! ACAAGTTCTGAATGCTAAAG+AGG + chr1.2:73551188-73551207 MS.gene34057:CDS 35.0%
!! AGCTCCAATCTTTTGGAAAA+TGG - chr1.2:73552345-73552364 None:intergenic 35.0%
!! GAAGACATGGTGTTATGTTA+TGG - chr1.2:73551065-73551084 None:intergenic 35.0%
!! TCCAATCTTTTGGAAAATGG+AGG - chr1.2:73552342-73552361 None:intergenic 35.0%
!! TTTGAGTTGCAACCTAAAGA+AGG + chr1.2:73551243-73551262 MS.gene34057:CDS 35.0%
!!! TATGTTGCTGGCCTTTTAAT+TGG + chr1.2:73551132-73551151 MS.gene34057:CDS 35.0%
AATTGAGGCTGCTGCTATTA+TGG + chr1.2:73551443-73551462 MS.gene34057:CDS 40.0%
AATTTCCAAGGTACACCGAT+TGG + chr1.2:73551696-73551715 MS.gene34057:CDS 40.0%
ACACCATGTCTTCCATTAAG+AGG + chr1.2:73551072-73551091 MS.gene34057:CDS 40.0%
ACCAACTGTGAGAATTCTCT+TGG - chr1.2:73552135-73552154 None:intergenic 40.0%
ACGCAACAAAGATGATTGAG+AGG + chr1.2:73551607-73551626 MS.gene34057:CDS 40.0%
ACTTCATCCTGGTCAAATTG+AGG + chr1.2:73551428-73551447 MS.gene34057:CDS 40.0%
AGTTTGGATTACGGCTTCAA+AGG + chr1.2:73551849-73551868 MS.gene34057:CDS 40.0%
CAAAGGAGCAGAAATTGCAA+TGG + chr1.2:73551866-73551885 MS.gene34057:CDS 40.0%
CAACTAGCTGGAATTGAAAC+TGG + chr1.2:73551216-73551235 MS.gene34057:CDS 40.0%
CGCAACAAAGATGATTGAGA+GGG + chr1.2:73551608-73551627 MS.gene34057:CDS 40.0%
CGCAATCCAAGTTTGGATTA+CGG + chr1.2:73551840-73551859 MS.gene34057:CDS 40.0%
CGTAATCCAAACTTGGATTG+CGG - chr1.2:73551842-73551861 None:intergenic 40.0%
CTAAAGAGGTGGAAAATGCT+AGG + chr1.2:73552393-73552412 MS.gene34057:CDS 40.0%
CTCCTTTAGACAATCCAACA+TGG - chr1.2:73552603-73552622 None:intergenic 40.0%
CTTCATGGAGGAAATTTCCA+AGG + chr1.2:73551684-73551703 MS.gene34057:CDS 40.0%
GAAGGTTTAGCACTAGTGAA+TGG + chr1.2:73551261-73551280 MS.gene34057:CDS 40.0%
GATTGTCTAAAGGAGTGGAA+TGG + chr1.2:73552608-73552627 MS.gene34057:CDS 40.0%
GCAGTGATTGTACCTCTTAA+TGG - chr1.2:73551087-73551106 None:intergenic 40.0%
GCATTCAGAACTTGTCCATT+AGG - chr1.2:73551183-73551202 None:intergenic 40.0%
GTACCTCTTAATGGAAGACA+TGG - chr1.2:73551078-73551097 None:intergenic 40.0%
TCAAGGAATATGGCACTTCA+TGG + chr1.2:73551669-73551688 MS.gene34057:CDS 40.0%
TCCCATGTTGGATTGTCTAA+AGG + chr1.2:73552598-73552617 MS.gene34057:CDS 40.0%
TCCTTCTCACAAAACCTTGA+TGG - chr1.2:73552176-73552195 None:intergenic 40.0%
TGCTGACAGGTGAGAAAATT+AGG + chr1.2:73552516-73552535 MS.gene34057:CDS 40.0%
TGTCGAATCACTTCAATCTG+CGG - chr1.2:73551588-73551607 None:intergenic 40.0%
TGTGCCAAGCTATTGATCTA+AGG + chr1.2:73552057-73552076 MS.gene34057:CDS 40.0%
TGTGCCTTAGATCAATAGCT+TGG - chr1.2:73552064-73552083 None:intergenic 40.0%
TGTTGGATTGTCTAAAGGAG+TGG + chr1.2:73552603-73552622 MS.gene34057:CDS 40.0%
TTCAGCACTTTGAACATGAG+TGG - chr1.2:73551934-73551953 None:intergenic 40.0%
TTCCACCTCTTTAGGCAAAA+GGG - chr1.2:73552387-73552406 None:intergenic 40.0%
TTGAAGCCGTAATCCAAACT+TGG - chr1.2:73551849-73551868 None:intergenic 40.0%
TTGGCACAATGCTACTAAGA+AGG - chr1.2:73552045-73552064 None:intergenic 40.0%
TTTCCACCTCTTTAGGCAAA+AGG - chr1.2:73552388-73552407 None:intergenic 40.0%
! AAAGAGGCTTTTCAACTAGC+TGG + chr1.2:73551204-73551223 MS.gene34057:CDS 40.0%
! ACTTTTGTCTGCGATTTTCG+CGG + chr1.2:73551353-73551372 MS.gene34057:CDS 40.0%
! ATTTTCGCGGAAGTTATGCT+AGG + chr1.2:73551366-73551385 MS.gene34057:CDS 40.0%
! CCAAAAGATTGGAGCTTTTG+AGG + chr1.2:73552349-73552368 MS.gene34057:CDS 40.0%
! CCTCAAAAGCTCCAATCTTT+TGG - chr1.2:73552352-73552371 None:intergenic 40.0%
! CTAGCATTTTCCACCTCTTT+AGG - chr1.2:73552395-73552414 None:intergenic 40.0%
! GTTTTCACAGCATTGTGTGA+TGG + chr1.2:73552563-73552582 MS.gene34057:CDS 40.0%
! TAAGACCCTTTTGCCTAAAG+AGG + chr1.2:73552379-73552398 MS.gene34057:CDS 40.0%
! TCTTGTTTAGGCTTCTGAAG+TGG - chr1.2:73551528-73551547 None:intergenic 40.0%
!! ATTCTCACAGTTGGTGTCAA+TGG + chr1.2:73552140-73552159 MS.gene34057:CDS 40.0%
!! GCTAGGGTTCAAGTTGAAAA+TGG + chr1.2:73552410-73552429 MS.gene34057:CDS 40.0%
!! TCCATCAAGGTTTTGTGAGA+AGG + chr1.2:73552172-73552191 MS.gene34057:CDS 40.0%
!!! TTGCTGGCCTTTTAATTGGA+AGG + chr1.2:73551136-73551155 MS.gene34057:CDS 40.0%
AATGGTACTGCAGTTGGATC+AGG + chr1.2:73551279-73551298 MS.gene34057:CDS 45.0%
ACCTGGTGAGGAATGTGATA+AGG + chr1.2:73552541-73552560 MS.gene34057:CDS 45.0%
ACCTTATCACATTCCTCACC+AGG - chr1.2:73552545-73552564 None:intergenic 45.0%
AGGAATATGGCACTTCATGG+AGG + chr1.2:73551672-73551691 MS.gene34057:CDS 45.0%
AGGCCAGCAACATATGCTAA+AGG - chr1.2:73551126-73551145 None:intergenic 45.0%
ATACACCAATCGGTGTACCT+TGG - chr1.2:73551704-73551723 None:intergenic 45.0%
ATGGTGAGTTGCATCCATCA+AGG + chr1.2:73552159-73552178 MS.gene34057:CDS 45.0%
CGTTTAGCCATTGCTTCCAT+TGG + chr1.2:73551738-73551757 MS.gene34057:CDS 45.0%
CTAGTGAATGGTACTGCAGT+TGG + chr1.2:73551273-73551292 MS.gene34057:CDS 45.0%
CTTTGAACATGAGTGGTGAC+AGG - chr1.2:73551927-73551946 None:intergenic 45.0%
GAAAATTAGGTCACCTGGTG+AGG + chr1.2:73552529-73552548 MS.gene34057:CDS 45.0%
GCACAATGCTACTAAGAAGG+TGG - chr1.2:73552042-73552061 None:intergenic 45.0%
GCCAAGAGAATTCTCACAGT+TGG + chr1.2:73552131-73552150 MS.gene34057:CDS 45.0%
GGTGAGAAAATTAGGTCACC+TGG + chr1.2:73552524-73552543 MS.gene34057:CDS 45.0%
GTCTCAGCTTCTGCATTAGA+GGG - chr1.2:73552265-73552284 None:intergenic 45.0%
TACTGCAGTTGGATCAGGTT+TGG + chr1.2:73551284-73551303 MS.gene34057:CDS 45.0%
TGTCTCAGCTTCTGCATTAG+AGG - chr1.2:73552266-73552285 None:intergenic 45.0%
! AGAGGTACAATCACTGCATC+AGG + chr1.2:73551090-73551109 MS.gene34057:CDS 45.0%
! TACACCGATTGGTGTATCGA+TGG + chr1.2:73551707-73551726 MS.gene34057:CDS 45.0%
! TCACAGCATTGTGTGATGGA+AGG + chr1.2:73552567-73552586 MS.gene34057:CDS 45.0%
! TGGATCAGGTTTGGCTTCAT+TGG + chr1.2:73551293-73551312 MS.gene34057:CDS 45.0%
!! TTAGGGACAAGTTTGCTGAC+AGG + chr1.2:73552503-73552522 MS.gene34057:CDS 45.0%
CGGCTAGCAGTGAGATTTGA+AGG - chr1.2:73551822-73551841 None:intergenic 50.0%
TGCTAGCCGCAATCCAAGTT+TGG + chr1.2:73551833-73551852 MS.gene34057:CDS 50.0%
! AGAGGGTATGTAGCACTGCA+AGG - chr1.2:73552248-73552267 None:intergenic 50.0%
! GACCCTTTTGCCTAAAGAGG+TGG + chr1.2:73552382-73552401 MS.gene34057:CDS 50.0%
! GAGGGTATGTAGCACTGCAA+GGG - chr1.2:73552247-73552266 None:intergenic 50.0%
! GAGTGGTGACAGGATTAGCA+AGG - chr1.2:73551917-73551936 None:intergenic 50.0%
CGATTCGAACATCACCGCAG+TGG + chr1.2:73551556-73551575 MS.gene34057:CDS 55.0%
GCAGCAGCCTCAATTTGACC+AGG - chr1.2:73551438-73551457 None:intergenic 55.0%
ATCTGCGGTCCAAGCCACTG+CGG - chr1.2:73551573-73551592 None:intergenic 60.0%
CGAACATCACCGCAGTGGCT+TGG + chr1.2:73551561-73551580 MS.gene34057:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 73550979 73552652 73550979 ID=MS.gene34057
chr1.2 mRNA 73550979 73552652 73550979 ID=MS.gene34057.t1;Parent=MS.gene34057
chr1.2 exon 73550979 73552652 73550979 ID=MS.gene34057.t1.exon1;Parent=MS.gene34057.t1
chr1.2 CDS 73550979 73552652 73550979 ID=cds.MS.gene34057.t1;Parent=MS.gene34057.t1
Gene Sequence

>MS.gene34057

ATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCAATAGCAAAATTTCTGAACCATAACATAACACCATGTCTTCCATTAAGAGGTACAATCACTGCATCAGGTGATTTAATTCCTTTAGCATATGTTGCTGGCCTTTTAATTGGAAGGCCAAATTCAAAATCTATTGGACCTAATGGACAAGTTCTGAATGCTAAAGAGGCTTTTCAACTAGCTGGAATTGAAACTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTAGCACTAGTGAATGGTACTGCAGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGATACAAATTTACTAGTTGTTCTCTCGGAACTTTTGTCTGCGATTTTCGCGGAAGTTATGCTAGGAAAACCTCAATTCACTGACCATTTGATTCATAAGTTGAAACTTCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGTTATTATCTTAAGGCTGCACAAAAAGTACATGAGATTAATCCACTTCAGAAGCCTAAACAAGATAGATACGCGATTCGAACATCACCGCAGTGGCTTGGACCGCAGATTGAAGTGATTCGACACGCAACAAAGATGATTGAGAGGGAGATAAATTCCGTGAATGACAATCCACTTATTGATGTTTCAAGGAATATGGCACTTCATGGAGGAAATTTCCAAGGTACACCGATTGGTGTATCGATGGATAACACTCGTTTAGCCATTGCTTCCATTGGTAAACTTATGTTTGCTCAATTCACTGAGCTTGTGAATGACATCTATAGCAACGGATTGCCTTCAAATCTCACTGCTAGCCGCAATCCAAGTTTGGATTACGGCTTCAAAGGAGCAGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCTAATCCTGTCACCACTCATGTTCAAAGTGCTGAACAACATAACCAAGATGTTAACTCTTTAGGCTTGATTTCAGCAAGAAAAACAGCTGAAGCAGTTGAAATATTGAAACTCATGTCATCCACCTTCTTAGTAGCATTGTGCCAAGCTATTGATCTAAGGCACATTGAGGAAAACTTGAAAAGTGTTGTCAAGAACACTGTGAGTCAAGTAGCCAAGAGAATTCTCACAGTTGGTGTCAATGGTGAGTTGCATCCATCAAGGTTTTGTGAGAAGGATTTACTCAATGTTGTTGAAGGTGAGTACGTTTTCGCTTACGTTGATGACCCTTGCAGTGCTACATACCCTCTAATGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATTCAAGCACCTCCATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAGCTTAAGACCCTTTTGCCTAAAGAGGTGGAAAATGCTAGGGTTCAAGTTGAAAATGGAAACCCTTCAGTTCCTAATATGATTAAGGAATGTAGATCATATCCATTGTACAAGTTCATAAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAATTAGGTCACCTGGTGAGGAATGTGATAAGGTTTTCACAGCATTGTGTGATGGAAGGTTTATTGATCCCATGTTGGATTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCTATTTGCTAG
Protein sequence

>MS.gene34057.t1

MLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLIPLAYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLVLFDTNLLVVLSELLSAIFAEVMLGKPQFTDHLIHKLKLHPGQIEAAAIMEHILDGSYYLKAAQKVHEINPLQKPKQDRYAIRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNMALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFTELVNDIYSNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMSSTFLVALCQAIDLRHIEENLKSVVKNTVSQVAKRILTVGVNGELHPSRFCEKDLLNVVEGEYVFAYVDDPCSATYPLMQKLRHVLVDHALQNGDKEANSSTSIFQKIGAFEEELKTLLPKEVENARVQVENGNPSVPNMIKECRSYPLYKFIRETLGTSLLTGEKIRSPGEECDKVFTALCDGRFIDPMLDCLKEWNGAPLPIC