Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34306.t1 | GAU16166.1 | 86.8 | 136 | 18 | 0 | 1 | 136 | 1 | 136 | 1.60E-53 | 218.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34306.t1 | B2RYG1 | 37.3 | 67 | 42 | 0 | 67 | 133 | 42 | 108 | 9.5e-07 | 54.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34306.t1 | A0A2K3NLX9 | 86.8 | 136 | 18 | 0 | 1 | 136 | 1 | 136 | 1.1e-53 | 218.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene34306 | 0.804054 | 2.60E-49 | -1.69E-46 |
MS.gene050228 | MS.gene34306 | 0.806645 | 7.44E-50 | -1.69E-46 |
MS.gene050623 | MS.gene34306 | -0.814753 | 1.31E-51 | -1.69E-46 |
MS.gene052176 | MS.gene34306 | 0.812424 | 4.27E-51 | -1.69E-46 |
MS.gene052302 | MS.gene34306 | 0.820316 | 7.32E-53 | -1.69E-46 |
MS.gene052376 | MS.gene34306 | 0.824287 | 8.76E-54 | -1.69E-46 |
MS.gene057140 | MS.gene34306 | 0.800269 | 1.56E-48 | -1.69E-46 |
MS.gene058182 | MS.gene34306 | 0.81327 | 2.79E-51 | -1.69E-46 |
MS.gene059830 | MS.gene34306 | 0.805382 | 1.37E-49 | -1.69E-46 |
MS.gene060683 | MS.gene34306 | 0.801622 | 8.26E-49 | -1.69E-46 |
MS.gene060685 | MS.gene34306 | 0.800409 | 1.46E-48 | -1.69E-46 |
MS.gene060998 | MS.gene34306 | 0.80049 | 1.41E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34306.t1 | MTR_4g005440 | 98.529 | 136 | 2 | 0 | 1 | 136 | 1 | 136 | 1.42e-96 | 274 |
MS.gene34306.t1 | MTR_3g108730 | 51.095 | 137 | 50 | 2 | 1 | 136 | 1 | 121 | 3.89e-37 | 123 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34306.t1 | AT1G16810 | 61.111 | 144 | 48 | 2 | 1 | 136 | 1 | 144 | 5.58e-47 | 149 |
MS.gene34306.t1 | AT1G16810 | 61.111 | 144 | 48 | 2 | 1 | 136 | 1 | 144 | 5.58e-47 | 149 |
MS.gene34306.t1 | AT1G16810 | 61.111 | 144 | 48 | 2 | 1 | 136 | 1 | 144 | 5.58e-47 | 149 |
Find 28 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATTTACTTCTTGATCATT+AGG | 0.263557 | 4.3:-89073489 | None:intergenic |
CGCTCATGTTTGCGAGATAT+TGG | 0.302036 | 4.3:-89073668 | None:intergenic |
AATCACCCAGGACCAACTTT+AGG | 0.323685 | 4.3:-89073705 | None:intergenic |
GTGAGATTTATTAGAAATCT+TGG | 0.347606 | 4.3:-89073622 | None:intergenic |
CGAGATATTGGTTGAAATCC+TGG | 0.357664 | 4.3:-89073656 | None:intergenic |
GCAACTTGATGTTCATAGAT+TGG | 0.407231 | 4.3:+89073599 | MS.gene34306:CDS |
GGAAAAGCATTGGATGTTGC+TGG | 0.421175 | 4.3:+89072428 | MS.gene34306:CDS |
GATATTCCTAAAGTTGGTCC+TGG | 0.441241 | 4.3:+89073699 | MS.gene34306:CDS |
ATGATGGGAGTGAATTGAGC+AGG | 0.471811 | 4.3:+89073508 | MS.gene34306:CDS |
CATTATGATATTCCTAAAGT+TGG | 0.473152 | 4.3:+89073693 | MS.gene34306:CDS |
AATGATCAAGAAGTAAATGA+TGG | 0.482714 | 4.3:+89073492 | MS.gene34306:CDS |
TCTATGTACCGCCTCTCTGC+TGG | 0.489804 | 4.3:-89073567 | None:intergenic |
ATCTCACCGCGATAGAATCC+AGG | 0.518832 | 4.3:+89073638 | MS.gene34306:CDS |
GAAGCTGAAGGGAAAAGCAT+TGG | 0.531649 | 4.3:+89072418 | MS.gene34306:CDS |
ACTGAAGATGAAATCTCAGC+AGG | 0.540124 | 4.3:+89072509 | MS.gene34306:CDS |
AGATGATCATCATAATGAGC+AGG | 0.545898 | 4.3:-89073540 | None:intergenic |
TCGGCATATGAGAATGTTGT+TGG | 0.556165 | 4.3:+89072386 | MS.gene34306:CDS |
TGATGGGAGTGAATTGAGCA+GGG | 0.558875 | 4.3:+89073509 | MS.gene34306:CDS |
ATGATCAAGAAGTAAATGAT+GGG | 0.571574 | 4.3:+89073493 | MS.gene34306:CDS |
ATATTCCTAAAGTTGGTCCT+GGG | 0.598854 | 4.3:+89073700 | MS.gene34306:CDS |
AACAACTCCTTGAATCACCC+AGG | 0.629413 | 4.3:-89073717 | None:intergenic |
ATCTTACACCAGCAGAGAGG+CGG | 0.643614 | 4.3:+89073559 | MS.gene34306:CDS |
GCATATGAGAATGTTGTTGG+TGG | 0.647733 | 4.3:+89072389 | MS.gene34306:CDS |
TGAAATCCTGGATTCTATCG+CGG | 0.661087 | 4.3:-89073644 | None:intergenic |
TGGTGGTAAACTGAAGCTGA+AGG | 0.678860 | 4.3:+89072406 | MS.gene34306:CDS |
AAAGCATTGGATGTTGCTGG+CGG | 0.694873 | 4.3:+89072431 | MS.gene34306:CDS |
GGTGGTAAACTGAAGCTGAA+GGG | 0.696896 | 4.3:+89072407 | MS.gene34306:CDS |
ATCATCTTACACCAGCAGAG+AGG | 0.709383 | 4.3:+89073556 | MS.gene34306:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTATGTTCAAGTA+AGG | - | chr4.3:89072880-89072899 | None:intergenic | 15.0% |
!! | TAAATATATTGCACAATTTA+TGG | - | chr4.3:89073411-89073430 | None:intergenic | 15.0% |
!!! | CATAGTATTATGTTTTAAAA+TGG | + | chr4.3:89072628-89072647 | MS.gene34306:intron | 15.0% |
!!! | TCAACAATAAATATCATTTT+CGG | + | chr4.3:89072944-89072963 | MS.gene34306:intron | 15.0% |
!!! | TTTTTTACTGAAAATCATAA+GGG | + | chr4.3:89072894-89072913 | MS.gene34306:intron | 15.0% |
!!! | TTTTTTTACTGAAAATCATA+AGG | + | chr4.3:89072893-89072912 | MS.gene34306:intron | 15.0% |
!! | AACTAAAACCAAAAAGATTA+AGG | - | chr4.3:89073386-89073405 | None:intergenic | 20.0% |
!! | ATTATAGTAAATGAGTATCT+GGG | + | chr4.3:89072811-89072830 | MS.gene34306:intron | 20.0% |
!! | GAGTATTATAACAATATGAA+TGG | + | chr4.3:89073178-89073197 | MS.gene34306:intron | 20.0% |
!!! | ATTCTCATCATAATTTTCTT+TGG | - | chr4.3:89072745-89072764 | None:intergenic | 20.0% |
!!! | GATTTTGAAAGAGAAAAAAA+AGG | - | chr4.3:89073333-89073352 | None:intergenic | 20.0% |
!!! | TTATGTTTTAAAATGGTCAA+TGG | + | chr4.3:89072635-89072654 | MS.gene34306:intron | 20.0% |
!!! | TTCTCATCATAATTTTCTTT+GGG | - | chr4.3:89072744-89072763 | None:intergenic | 20.0% |
! | AAAAGATTAAGGATCTGTTT+CGG | - | chr4.3:89073375-89073394 | None:intergenic | 25.0% |
! | AATGATCAAGAAGTAAATGA+TGG | + | chr4.3:89073492-89073511 | MS.gene34306:CDS | 25.0% |
! | ATGATCAAGAAGTAAATGAT+GGG | + | chr4.3:89073493-89073512 | MS.gene34306:CDS | 25.0% |
! | CATTATGATATTCCTAAAGT+TGG | + | chr4.3:89073693-89073712 | MS.gene34306:CDS | 25.0% |
! | GATTATAGTAAATGAGTATC+TGG | + | chr4.3:89072810-89072829 | MS.gene34306:intron | 25.0% |
! | GTGAGATTTATTAGAAATCT+TGG | - | chr4.3:89073625-89073644 | None:intergenic | 25.0% |
! | TAATACAAAATCCCCTAATT+TGG | - | chr4.3:89073244-89073263 | None:intergenic | 25.0% |
! | TCATTTACTTCTTGATCATT+AGG | - | chr4.3:89073492-89073511 | None:intergenic | 25.0% |
! | TTGAAAGAGAAAAAAAAGGA+AGG | - | chr4.3:89073329-89073348 | None:intergenic | 25.0% |
!! | AAACAGATCCTTAATCTTTT+TGG | + | chr4.3:89073375-89073394 | MS.gene34306:intron | 25.0% |
!! | ATAAATATCATTTTCGGCAA+TGG | + | chr4.3:89072950-89072969 | MS.gene34306:intron | 25.0% |
!! | TAAATATCATTTTCGGCAAT+GGG | + | chr4.3:89072951-89072970 | MS.gene34306:intron | 25.0% |
!!! | TTTTTGGTTTACATTTCCTA+AGG | + | chr4.3:89073028-89073047 | MS.gene34306:intron | 25.0% |
AAAGAGAAAAAAAAGGAAGG+AGG | - | chr4.3:89073326-89073345 | None:intergenic | 30.0% | |
AGTAAAACATCTTATGGTGT+TGG | + | chr4.3:89072554-89072573 | MS.gene34306:intron | 30.0% | |
CCACCTACATTAAATACAAA+TGG | - | chr4.3:89073447-89073466 | None:intergenic | 30.0% | |
CCATTTGTATTTAATGTAGG+TGG | + | chr4.3:89073444-89073463 | MS.gene34306:intron | 30.0% | |
GAAGGACTCAAAAAATGTAT+TGG | - | chr4.3:89073222-89073241 | None:intergenic | 30.0% | |
GTATGATGTAACAAGAATCA+AGG | - | chr4.3:89072605-89072624 | None:intergenic | 30.0% | |
TAGCCAAGTAAAACATCTTA+TGG | + | chr4.3:89072548-89072567 | MS.gene34306:intron | 30.0% | |
! | ACACCATAAGATGTTTTACT+TGG | - | chr4.3:89072554-89072573 | None:intergenic | 30.0% |
! | ATAAGATGTTTTACTTGGCT+AGG | - | chr4.3:89072549-89072568 | None:intergenic | 30.0% |
! | ATAATTTTCTTTGGGTCAGA+AGG | - | chr4.3:89072736-89072755 | None:intergenic | 30.0% |
! | TGTATGAATTTTGCAAGAAC+AGG | + | chr4.3:89072766-89072785 | MS.gene34306:intron | 30.0% |
! | TTTGTAGTCACTGTTCTTTT+TGG | + | chr4.3:89073012-89073031 | MS.gene34306:intron | 30.0% |
!! | GTGCCATTTGTATTTAATGT+AGG | + | chr4.3:89073441-89073460 | MS.gene34306:intron | 30.0% |
!! | TTTTGAGTCCTTCCAAATTA+GGG | + | chr4.3:89073229-89073248 | MS.gene34306:intron | 30.0% |
!!! | TTTTTGAGTCCTTCCAAATT+AGG | + | chr4.3:89073228-89073247 | MS.gene34306:intron | 30.0% |
AAAAAAAAGGAAGGAGGAAG+TGG | - | chr4.3:89073320-89073339 | None:intergenic | 35.0% | |
AATCAACTAGGTTGCATAAC+AGG | - | chr4.3:89072993-89073012 | None:intergenic | 35.0% | |
ACAAAATCCCCTAATTTGGA+AGG | - | chr4.3:89073240-89073259 | None:intergenic | 35.0% | |
AGATGATCATCATAATGAGC+AGG | - | chr4.3:89073543-89073562 | None:intergenic | 35.0% | |
CAGTGACTACAAAATCAACT+AGG | - | chr4.3:89073005-89073024 | None:intergenic | 35.0% | |
GCAACTTGATGTTCATAGAT+TGG | + | chr4.3:89073599-89073618 | MS.gene34306:CDS | 35.0% | |
GGACTCAAAAAATGTATTGG+AGG | - | chr4.3:89073219-89073238 | None:intergenic | 35.0% | |
TCAAATCACCTAGATTGCAA+TGG | - | chr4.3:89072792-89072811 | None:intergenic | 35.0% | |
TTTGAGTCCTTCCAAATTAG+GGG | + | chr4.3:89073230-89073249 | MS.gene34306:intron | 35.0% | |
! | ATATTCCTAAAGTTGGTCCT+GGG | + | chr4.3:89073700-89073719 | MS.gene34306:CDS | 35.0% |
ACTGAAGATGAAATCTCAGC+AGG | + | chr4.3:89072509-89072528 | MS.gene34306:CDS | 40.0% | |
CTGAAAATCATAAGGGACAG+TGG | + | chr4.3:89072901-89072920 | MS.gene34306:intron | 40.0% | |
GCATATGAGAATGTTGTTGG+TGG | + | chr4.3:89072389-89072408 | MS.gene34306:CDS | 40.0% | |
TAAGGATCTGTTTCGGAGTT+TGG | - | chr4.3:89073368-89073387 | None:intergenic | 40.0% | |
TCGGCATATGAGAATGTTGT+TGG | + | chr4.3:89072386-89072405 | MS.gene34306:CDS | 40.0% | |
TGAAATCCTGGATTCTATCG+CGG | - | chr4.3:89073647-89073666 | None:intergenic | 40.0% | |
TTCTGTTTGATGTGCTGCAA+TGG | + | chr4.3:89072658-89072677 | MS.gene34306:intron | 40.0% | |
! | CGAGATATTGGTTGAAATCC+TGG | - | chr4.3:89073659-89073678 | None:intergenic | 40.0% |
! | GATATTCCTAAAGTTGGTCC+TGG | + | chr4.3:89073699-89073718 | MS.gene34306:CDS | 40.0% |
! | GCAATGGGTTTCAGTAAACA+GGG | + | chr4.3:89072966-89072985 | MS.gene34306:intron | 40.0% |
AAAAAGGAAGGAGGAAGTGG+AGG | - | chr4.3:89073317-89073336 | None:intergenic | 45.0% | |
AAAAGGAAGGAGGAAGTGGA+GGG | - | chr4.3:89073316-89073335 | None:intergenic | 45.0% | |
ACATTTCCTAAGGCTCCGTT+CGG | + | chr4.3:89073038-89073057 | MS.gene34306:intron | 45.0% | |
AGAACAGGCCATTGCAATCT+AGG | + | chr4.3:89072781-89072800 | MS.gene34306:intron | 45.0% | |
ATCATCTTACACCAGCAGAG+AGG | + | chr4.3:89073556-89073575 | MS.gene34306:CDS | 45.0% | |
ATCTGTTTCGGAGTTTGGAG+GGG | - | chr4.3:89073363-89073382 | None:intergenic | 45.0% | |
CGCTCATGTTTGCGAGATAT+TGG | - | chr4.3:89073671-89073690 | None:intergenic | 45.0% | |
GATCTGTTTCGGAGTTTGGA+GGG | - | chr4.3:89073364-89073383 | None:intergenic | 45.0% | |
GGTGGTAAACTGAAGCTGAA+GGG | + | chr4.3:89072407-89072426 | MS.gene34306:CDS | 45.0% | |
TGATGGGAGTGAATTGAGCA+GGG | + | chr4.3:89073509-89073528 | MS.gene34306:CDS | 45.0% | |
TGGTGGTAAACTGAAGCTGA+AGG | + | chr4.3:89072406-89072425 | MS.gene34306:CDS | 45.0% | |
! | ATGATGGGAGTGAATTGAGC+AGG | + | chr4.3:89073508-89073527 | MS.gene34306:CDS | 45.0% |
! | GAAGCTGAAGGGAAAAGCAT+TGG | + | chr4.3:89072418-89072437 | MS.gene34306:CDS | 45.0% |
! | GGCAATGGGTTTCAGTAAAC+AGG | + | chr4.3:89072965-89072984 | MS.gene34306:intron | 45.0% |
!! | AAAGCATTGGATGTTGCTGG+CGG | + | chr4.3:89072431-89072450 | MS.gene34306:CDS | 45.0% |
!! | GGAAAAGCATTGGATGTTGC+TGG | + | chr4.3:89072428-89072447 | MS.gene34306:CDS | 45.0% |
ATCTCACCGCGATAGAATCC+AGG | + | chr4.3:89073638-89073657 | MS.gene34306:CDS | 50.0% | |
ATCTTACACCAGCAGAGAGG+CGG | + | chr4.3:89073559-89073578 | MS.gene34306:CDS | 50.0% | |
CATTTCCTAAGGCTCCGTTC+GGG | + | chr4.3:89073039-89073058 | MS.gene34306:intron | 50.0% | |
GGATCTGTTTCGGAGTTTGG+AGG | - | chr4.3:89073365-89073384 | None:intergenic | 50.0% | |
GTGGAGGGAATAGAGGACTT+CGG | - | chr4.3:89073301-89073320 | None:intergenic | 50.0% | |
TGGAGGGAATAGAGGACTTC+GGG | - | chr4.3:89073300-89073319 | None:intergenic | 50.0% | |
TTTCGGAGTTTGGAGGGGAA+GGG | - | chr4.3:89073358-89073377 | None:intergenic | 50.0% | |
!! | AGGGAATGGATGGCTTTGTG+GGG | + | chr4.3:89073074-89073093 | MS.gene34306:intron | 50.0% |
!! | GAGGGAATGGATGGCTTTGT+GGG | + | chr4.3:89073073-89073092 | MS.gene34306:intron | 50.0% |
AAACTCCCGAACGGAGCCTT+AGG | - | chr4.3:89073047-89073066 | None:intergenic | 55.0% | |
AGGGAATAGAGGACTTCGGG+AGG | - | chr4.3:89073297-89073316 | None:intergenic | 55.0% | |
GGAATAGAGGACTTCGGGAG+GGG | - | chr4.3:89073295-89073314 | None:intergenic | 55.0% | |
GGAGGAAGTGGAGGGAATAG+AGG | - | chr4.3:89073308-89073327 | None:intergenic | 55.0% | |
GGGAATAGAGGACTTCGGGA+GGG | - | chr4.3:89073296-89073315 | None:intergenic | 55.0% | |
GTTTCGGAGTTTGGAGGGGA+AGG | - | chr4.3:89073359-89073378 | None:intergenic | 55.0% | |
TAAGGCTCCGTTCGGGAGTT+TGG | + | chr4.3:89073046-89073065 | MS.gene34306:intron | 55.0% | |
TCTATGTACCGCCTCTCTGC+TGG | - | chr4.3:89073570-89073589 | None:intergenic | 55.0% | |
TTTGGAGGGGAGGGAATGGA+TGG | + | chr4.3:89073064-89073083 | MS.gene34306:intron | 55.0% | |
! | GGAGGGAATGGATGGCTTTG+TGG | + | chr4.3:89073072-89073091 | MS.gene34306:intron | 55.0% |
!! | AATGGATGGCTTTGTGGGGG+AGG | + | chr4.3:89073078-89073097 | MS.gene34306:intron | 55.0% |
!! | ATGGATGGCTTTGTGGGGGA+GGG | + | chr4.3:89073079-89073098 | MS.gene34306:intron | 55.0% |
!! | GGGAATGGATGGCTTTGTGG+GGG | + | chr4.3:89073075-89073094 | MS.gene34306:intron | 55.0% |
ATAGAGGACTTCGGGAGGGG+AGG | - | chr4.3:89073292-89073311 | None:intergenic | 60.0% | |
CTCCCCTCCAAACTCCCGAA+CGG | - | chr4.3:89073056-89073075 | None:intergenic | 60.0% | |
CTCCGTTCGGGAGTTTGGAG+GGG | + | chr4.3:89073051-89073070 | MS.gene34306:intron | 60.0% | |
GCTCCGTTCGGGAGTTTGGA+GGG | + | chr4.3:89073050-89073069 | MS.gene34306:intron | 60.0% | |
GGAGTTTGGAGGGGAGGGAA+TGG | + | chr4.3:89073060-89073079 | MS.gene34306:intron | 60.0% | |
GTTCGGGAGTTTGGAGGGGA+GGG | + | chr4.3:89073055-89073074 | MS.gene34306:intron | 60.0% | |
TAGAGGACTTCGGGAGGGGA+GGG | - | chr4.3:89073291-89073310 | None:intergenic | 60.0% | |
! | GGCTTTGTGGGGGAGGGAAA+TGG | + | chr4.3:89073085-89073104 | MS.gene34306:intron | 60.0% |
ACTTCGGGAGGGGAGGGCTT+TGG | - | chr4.3:89073285-89073304 | None:intergenic | 65.0% | |
CGGAGTTTGGAGGGGAAGGG+AGG | - | chr4.3:89073355-89073374 | None:intergenic | 65.0% | |
CGTTCGGGAGTTTGGAGGGG+AGG | + | chr4.3:89073054-89073073 | MS.gene34306:intron | 65.0% | |
CTTCGGGAGGGGAGGGCTTT+GGG | - | chr4.3:89073284-89073303 | None:intergenic | 65.0% | |
GGCTCCGTTCGGGAGTTTGG+AGG | + | chr4.3:89073049-89073068 | MS.gene34306:intron | 65.0% | |
TTCGGGAGGGGAGGGCTTTG+GGG | - | chr4.3:89073283-89073302 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 89072383 | 89073725 | 89072383 | ID=MS.gene34306 |
chr4.3 | mRNA | 89072383 | 89073725 | 89072383 | ID=MS.gene34306.t1;Parent=MS.gene34306 |
chr4.3 | exon | 89072383 | 89072530 | 89072383 | ID=MS.gene34306.t1.exon1;Parent=MS.gene34306.t1 |
chr4.3 | CDS | 89072383 | 89072530 | 89072383 | ID=cds.MS.gene34306.t1;Parent=MS.gene34306.t1 |
chr4.3 | exon | 89073463 | 89073725 | 89073463 | ID=MS.gene34306.t1.exon2;Parent=MS.gene34306.t1 |
chr4.3 | CDS | 89073463 | 89073725 | 89073463 | ID=cds.MS.gene34306.t1;Parent=MS.gene34306.t1 |
Gene Sequence |
Protein sequence |