AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34432.t1 MTR_1g101950 97.904 334 6 1 3 336 8 340 0.0 660
MS.gene34432.t1 MTR_6g089480 88.312 308 36 0 26 333 1 308 0.0 567
MS.gene34432.t1 MTR_6g089480 87.868 272 33 0 26 297 1 272 3.72e-179 497
MS.gene34432.t1 MTR_6g089480 88.519 270 31 0 26 295 1 270 5.30e-179 496
MS.gene34432.t1 MTR_5g079460 74.233 326 82 2 8 332 55 379 1.91e-170 479
MS.gene34432.t1 MTR_1g069490 71.601 331 68 2 6 336 97 401 4.22e-160 454
MS.gene34432.t1 MTR_1g069745 74.662 296 63 2 40 335 4 287 1.73e-155 437
MS.gene34432.t1 MTR_2g098950 63.385 325 117 1 9 333 4 326 5.45e-149 422
MS.gene34432.t1 MTR_4g067310 65.615 317 107 1 17 333 13 327 7.27e-149 422
MS.gene34432.t1 MTR_1g076850 62.857 315 115 2 19 333 8 320 9.11e-148 419
MS.gene34432.t1 MTR_1g057810 68.389 329 98 3 4 332 238 560 7.40e-146 423
MS.gene34432.t1 MTR_7g075860 62.975 316 115 1 19 332 41 356 6.64e-143 408
MS.gene34432.t1 MTR_1g105150 64.438 329 97 4 4 332 238 546 1.72e-131 386
MS.gene34432.t1 MTR_1g054730 53.939 330 113 5 7 336 100 390 9.04e-104 310
MS.gene34432.t1 MTR_0046s0180 75.238 105 26 0 229 333 5 109 2.31e-52 168
MS.gene34432.t1 MTR_5g044990 29.942 344 204 5 19 328 210 550 7.28e-49 172
MS.gene34432.t1 MTR_4g019165 30.899 356 201 6 19 329 93 448 4.80e-46 162
MS.gene34432.t1 MTR_4g078150 27.574 272 160 10 44 296 50 303 4.62e-11 63.5
MS.gene34432.t1 MTR_0046s0210 53.623 69 25 2 6 73 91 153 7.67e-11 60.1
MS.gene34432.t1 MTR_4g078150 27.574 272 160 10 44 296 163 416 8.96e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34432.t1 AT5G51830 78.056 319 70 0 12 330 16 334 0.0 522
MS.gene34432.t1 AT5G51830 78.056 319 70 0 12 330 16 334 0.0 522
MS.gene34432.t1 AT1G66430 73.186 317 84 1 14 330 60 375 4.17e-171 481
MS.gene34432.t1 AT2G31390 63.777 323 115 2 14 336 4 324 2.00e-147 418
MS.gene34432.t1 AT1G06030 63.009 319 116 2 15 333 7 323 1.20e-145 414
MS.gene34432.t1 AT4G10260 64.935 308 106 2 19 326 6 311 1.95e-145 413
MS.gene34432.t1 AT3G59480 62.733 322 114 3 9 330 4 319 8.02e-145 412
MS.gene34432.t1 AT1G06020 62.342 316 117 1 18 333 9 322 2.73e-143 409
MS.gene34432.t1 AT3G54090 33.053 357 193 8 19 330 103 458 4.59e-52 179
MS.gene34432.t1 AT1G50390 49.412 170 55 1 164 333 1 139 3.82e-47 156
MS.gene34432.t1 AT1G69200 31.098 328 192 7 19 313 206 532 5.10e-47 168

Find 75 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCGAAATATAGCGCTTTC+TGG 0.164655 1.2:+76031722 None:intergenic
CAATTAGAAGTTTGAGATTA+GGG 0.257397 1.2:+76032274 None:intergenic
CAGGCTAAAATATTCCATTA+TGG 0.292003 1.2:-76032674 MS.gene34432:CDS
TAGGTTGGATCAGATGAATT+TGG 0.297120 1.2:-76032976 MS.gene34432:CDS
AACAAAAGCCAATGCGGTTC+TGG 0.313707 1.2:+76032885 None:intergenic
TCCTAGTGCTGATATGCTTC+TGG 0.318385 1.2:-76032818 MS.gene34432:CDS
CGAATTTGAGATTGGCACTA+TGG 0.327098 1.2:-76032559 MS.gene34432:CDS
AGGTTGGATCAGATGAATTT+GGG 0.335559 1.2:-76032975 MS.gene34432:CDS
ACAATTAGAAGTTTGAGATT+AGG 0.347106 1.2:+76032273 None:intergenic
GCAGTTGGCATCTCTAGGTT+GGG 0.352397 1.2:-76033668 MS.gene34432:CDS
AGTGGACTGGTTGTTTGTTT+TGG 0.362156 1.2:-76033788 MS.gene34432:CDS
GCATATCAGCACTAGGATTT+CGG 0.363456 1.2:+76032824 None:intergenic
CAAAATAACGTTGATACATC+TGG 0.394700 1.2:-76032928 MS.gene34432:CDS
TCAAACTGATGGAACCATAA+TGG 0.399197 1.2:+76032660 None:intergenic
GGCAGTTGGCATCTCTAGGT+TGG 0.406307 1.2:-76033669 MS.gene34432:CDS
ATGCCAACTGCCACGTTAGC+GGG 0.409326 1.2:+76033680 None:intergenic
CATAGTGCCAATCTCAAATT+CGG 0.415637 1.2:+76032560 None:intergenic
GGACTGGTATAATGAGCATA+TGG 0.418638 1.2:-76032517 MS.gene34432:CDS
CAGTTGGCATCTCTAGGTTG+GGG 0.424281 1.2:-76033667 MS.gene34432:CDS
ATATGATCCGAATTTGAGAT+TGG 0.431796 1.2:-76032567 MS.gene34432:CDS
CCAGCACCAGTTGTGTCAAC+AGG 0.432600 1.2:+76031906 None:intergenic
TCGTTGTACTCTCCGTTTGT+GGG 0.433338 1.2:+76033815 None:intergenic
TGAATTACCTCGAAAATACT+TGG 0.438736 1.2:+76031840 None:intergenic
TTCGTTGTACTCTCCGTTTG+TGG 0.456495 1.2:+76033814 None:intergenic
CTGGAGATGCATTTGTTAGT+GGG 0.456951 1.2:-76031887 MS.gene34432:CDS
TTTCTTGAAAGCAGGTGCTT+CGG 0.458667 1.2:+76033718 None:intergenic
CCTGTTGACACAACTGGTGC+TGG 0.471362 1.2:-76031906 MS.gene34432:CDS
GGATCTAGCCGATGTCATAA+AGG 0.488434 1.2:-76032495 MS.gene34432:intron
GGCCATCAGCTGAGGCTGCT+CGG 0.491094 1.2:-76032538 MS.gene34432:CDS
AAACTTCTAATTGTTACTGA+AGG 0.493747 1.2:-76032264 MS.gene34432:CDS
TCAGCTGAGGCTGCTCGGAC+TGG 0.496871 1.2:-76032533 MS.gene34432:CDS
GCTGGAGATGCATTTGTTAG+TGG 0.500302 1.2:-76031888 MS.gene34432:CDS
GTCCGAGCAGCCTCAGCTGA+TGG 0.500567 1.2:+76032536 None:intergenic
GTTAAACCTGTTGACACAAC+TGG 0.501040 1.2:-76031912 MS.gene34432:CDS
TGACCATAATCTCATTGAAA+AGG 0.502641 1.2:-76032782 MS.gene34432:intron
AATACAACATCATCATCATA+AGG 0.505738 1.2:+76032312 None:intergenic
AAAATTTACCTTTATGACAT+CGG 0.508019 1.2:+76032487 None:intergenic
CCAGGAGCTTTCTTGAAAGC+AGG 0.513992 1.2:+76033710 None:intergenic
TTCTGATGCCAGAACCGCAT+TGG 0.514230 1.2:-76032893 MS.gene34432:CDS
GCAAGATGAGCTGACTTGCA+TGG 0.522605 1.2:+76032629 None:intergenic
TTTGTTACACTTAGAGCTGA+TGG 0.528198 1.2:-76032868 MS.gene34432:CDS
CCTGCTTTCAAGAAAGCTCC+TGG 0.530029 1.2:-76033710 MS.gene34432:CDS
AGTTGGCATCTCTAGGTTGG+GGG 0.540601 1.2:-76033666 MS.gene34432:CDS
GACTGGTATAATGAGCATAT+GGG 0.540901 1.2:-76032516 MS.gene34432:CDS
GCGATCACCGTGACAGAGAG+AGG 0.544506 1.2:-76031688 MS.gene34432:CDS
TTCATCTGCATTTCTAGGCA+AGG 0.544541 1.2:-76033642 MS.gene34432:intron
TGGCTCATCAATCAAACTGA+TGG 0.547967 1.2:+76032649 None:intergenic
CTATATTTCGCAAATGTATG+TGG 0.554913 1.2:-76031712 MS.gene34432:CDS
ACGTTAGCGGGAGCACCACC+AGG 0.555033 1.2:+76033692 None:intergenic
ACGTGGCAGTTGGCATCTCT+AGG 0.559314 1.2:-76033673 MS.gene34432:CDS
AACTTCTAATTGTTACTGAA+GGG 0.559879 1.2:-76032263 MS.gene34432:CDS
GCTCCCGCTAACGTGGCAGT+TGG 0.563123 1.2:-76033683 MS.gene34432:CDS
TTTATTGCAGATCAGTGAAG+AGG 0.565517 1.2:-76032364 MS.gene34432:intron
TACCTCGAAAATACTTGGGT+CGG 0.566049 1.2:+76031845 None:intergenic
AAATCTGATGATCCCACAAA+CGG 0.569926 1.2:-76033827 MS.gene34432:CDS
CATGTGAAGGTCATCATGGT+TGG 0.573865 1.2:-76034079 None:intergenic
TGGTGGTGCTCCCGCTAACG+TGG 0.574825 1.2:-76033690 MS.gene34432:CDS
AGATGAATTTGGGTATATGT+TGG 0.576116 1.2:-76032965 MS.gene34432:CDS
CGATCACCGTGACAGAGAGA+GGG 0.577682 1.2:-76031687 MS.gene34432:CDS
GATGCCAACTGCCACGTTAG+CGG 0.581644 1.2:+76033679 None:intergenic
AATTGTTACTGAAGGGTCAG+AGG 0.586261 1.2:-76032256 MS.gene34432:CDS
AATTGCCCCTCTCTCTGTCA+CGG 0.587278 1.2:+76031681 None:intergenic
ATTGTTACTGAAGGGTCAGA+GGG 0.587459 1.2:-76032255 MS.gene34432:CDS
GGCACTATGGCCATCAGCTG+AGG 0.597442 1.2:-76032546 MS.gene34432:CDS
AGAGTCTTTAGCAATTCTCA+AGG 0.603061 1.2:+76032604 None:intergenic
GAATTACCTCGAAAATACTT+GGG 0.606713 1.2:+76031841 None:intergenic
GTACAACGAAACAAGTGGAC+TGG 0.613455 1.2:-76033801 MS.gene34432:CDS
GGAGAGTACAACGAAACAAG+TGG 0.626054 1.2:-76033806 MS.gene34432:CDS
TCCAGAAGCATATCAGCACT+AGG 0.651647 1.2:+76032817 None:intergenic
AGAGACACTCCACCCACTGT+AGG 0.656519 1.2:+76033743 None:intergenic
GTTGGCATCTCTAGGTTGGG+GGG 0.661012 1.2:-76033665 MS.gene34432:CDS
GCTTTCAAGAAAGCTCCTGG+TGG 0.692356 1.2:-76033707 MS.gene34432:CDS
ACGTTGATACATCTGGCATG+CGG 0.696496 1.2:-76032921 MS.gene34432:CDS
GATCACCGTGACAGAGAGAG+GGG 0.699187 1.2:-76031686 MS.gene34432:CDS
AAGTGTAACAAAAGCCAATG+CGG 0.715154 1.2:+76032879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGTTTAAAAAAAAAT+AGG + chr1.2:76031801-76031820 None:intergenic 10.0%
!! TAATTCAACAATAAAAAAAG+AGG + chr1.2:76032479-76032498 None:intergenic 15.0%
!! TATATCTATGTCTATTTATT+AGG - chr1.2:76032080-76032099 MS.gene34432:intron 15.0%
!!! TTCTTTTATTTCATACTAAT+TGG - chr1.2:76031737-76031756 MS.gene34432:CDS 15.0%
!! AAAATTTACCTTTATGACAT+CGG + chr1.2:76033213-76033232 None:intergenic 20.0%
!! AAATCTGAGTTAAATAACTT+TGG + chr1.2:76033496-76033515 None:intergenic 20.0%
!! AATAAAAGAATCATTTCACA+TGG + chr1.2:76031727-76031746 None:intergenic 20.0%
!! ATAAAAGAATCATTTCACAT+GGG + chr1.2:76031726-76031745 None:intergenic 20.0%
!! ATATTTGAACAAATCAAACA+TGG + chr1.2:76032134-76032153 None:intergenic 20.0%
!! TTAGGAATATGAATCAATAT+TGG - chr1.2:76032625-76032644 MS.gene34432:CDS 20.0%
!!! CTGAATGATTGTTTTAAAAA+AGG - chr1.2:76032216-76032235 MS.gene34432:intron 20.0%
!!! TTTTGAATTCAACTATAACA+TGG + chr1.2:76031653-76031672 None:intergenic 20.0%
! AAACTTCTAATTGTTACTGA+AGG - chr1.2:76033433-76033452 MS.gene34432:intron 25.0%
! AAAGATATTCCTCAAAATGA+AGG + chr1.2:76032362-76032381 None:intergenic 25.0%
! AACTTCTAATTGTTACTGAA+GGG - chr1.2:76033434-76033453 MS.gene34432:intron 25.0%
! AATACAACATCATCATCATA+AGG + chr1.2:76033388-76033407 None:intergenic 25.0%
! AGAAAAAAGTTATGAACGTT+CGG - chr1.2:76033910-76033929 MS.gene34432:intron 25.0%
! ATCTATGTCTATTTATTAGG+TGG - chr1.2:76032083-76032102 MS.gene34432:intron 25.0%
! ATTATACAGACTTAAACCAA+AGG + chr1.2:76032985-76033004 None:intergenic 25.0%
! ATTTCATACTAATTGGCATA+AGG - chr1.2:76031744-76031763 MS.gene34432:intron 25.0%
! CAAAGAAAATAATGCAATGA+GGG + chr1.2:76033544-76033563 None:intergenic 25.0%
! CAATACAGATTTCTTAACTA+TGG + chr1.2:76032157-76032176 None:intergenic 25.0%
! CTGTATTGTTATAGACTTAT+AGG - chr1.2:76032169-76032188 MS.gene34432:intron 25.0%
! TAAGAAAATAACACTTCAGA+TGG + chr1.2:76033313-76033332 None:intergenic 25.0%
! TACAAGTACATGATATTTCT+AGG + chr1.2:76032521-76032540 None:intergenic 25.0%
! TACATGTACTTTATGAAGTT+TGG - chr1.2:76031673-76031692 MS.gene34432:CDS 25.0%
! TTAGGAATATGAATCTATGT+TGG - chr1.2:76032585-76032604 MS.gene34432:CDS 25.0%
!! ACAATTAGAAGTTTGAGATT+AGG + chr1.2:76033427-76033446 None:intergenic 25.0%
!! CAATTAGAAGTTTGAGATTA+GGG + chr1.2:76033426-76033445 None:intergenic 25.0%
!! GAAAAAAGAATGACTTGTAA+TGG + chr1.2:76033279-76033298 None:intergenic 25.0%
!!! AGTCATTCTTTTTTCTTTCT+TGG - chr1.2:76033284-76033303 MS.gene34432:intron 25.0%
!!! TTATTTTATGTTGCAGAATG+AGG - chr1.2:76033945-76033964 MS.gene34432:intron 25.0%
!!! TTTTAACTTAAACTGATTGC+AGG - chr1.2:76033004-76033023 MS.gene34432:intron 25.0%
AAAGAGGAAAAAAGTAGAAC+AGG + chr1.2:76032463-76032482 None:intergenic 30.0%
AAGAGGAAAAAAGTAGAACA+GGG + chr1.2:76032462-76032481 None:intergenic 30.0%
AATGGGATTTATAGTTGGTT+AGG + chr1.2:76032435-76032454 None:intergenic 30.0%
AATTCCCTAAAAAATGAGCT+TGG - chr1.2:76032305-76032324 MS.gene34432:CDS 30.0%
ACTTAAACCAAAGGTCTTTA+TGG + chr1.2:76032976-76032995 None:intergenic 30.0%
ACTTTATGAAGTTTGGCTAT+TGG - chr1.2:76031680-76031699 MS.gene34432:CDS 30.0%
AGATGAATTTGGGTATATGT+TGG - chr1.2:76032732-76032751 MS.gene34432:intron 30.0%
ATTCCCTAAAAAATGAGCTT+GGG - chr1.2:76032306-76032325 MS.gene34432:CDS 30.0%
CAAAATAACGTTGATACATC+TGG - chr1.2:76032769-76032788 MS.gene34432:intron 30.0%
CAGGCTAAAATATTCCATTA+TGG - chr1.2:76033023-76033042 MS.gene34432:intron 30.0%
CCATCTCTGTTTATAAAATG+TGG - chr1.2:76032950-76032969 MS.gene34432:CDS 30.0%
CTATATTTCGCAAATGTATG+TGG - chr1.2:76033985-76034004 MS.gene34432:intron 30.0%
GAATGTAACATTGTCATGTT+TGG - chr1.2:76032328-76032347 MS.gene34432:CDS 30.0%
GAATTACCTCGAAAATACTT+GGG + chr1.2:76033859-76033878 None:intergenic 30.0%
GCAAAGAAAATAATGCAATG+AGG + chr1.2:76033545-76033564 None:intergenic 30.0%
TAAACAGAGATGGAAATTCA+AGG + chr1.2:76032943-76032962 None:intergenic 30.0%
TGAATTACCTCGAAAATACT+TGG + chr1.2:76033860-76033879 None:intergenic 30.0%
TGACCATAATCTCATTGAAA+AGG - chr1.2:76032915-76032934 MS.gene34432:CDS 30.0%
TTGAACAAATCAAACATGGA+AGG + chr1.2:76032130-76032149 None:intergenic 30.0%
! AATTTGTGTGCAGGATTTTA+AGG - chr1.2:76033742-76033761 MS.gene34432:CDS 30.0%
! ATATGATCCGAATTTGAGAT+TGG - chr1.2:76033130-76033149 MS.gene34432:intron 30.0%
! ATTTGTGTGCAGGATTTTAA+GGG - chr1.2:76033743-76033762 MS.gene34432:CDS 30.0%
! CCACATTTTATAAACAGAGA+TGG + chr1.2:76032953-76032972 None:intergenic 30.0%
! GCTGAGAAATTCTGAATTTT+AGG - chr1.2:76032607-76032626 MS.gene34432:CDS 30.0%
! GTACCTTTTCAATGAGATTA+TGG + chr1.2:76032921-76032940 None:intergenic 30.0%
! GTAGCAGTATACTCAATTTT+AGG - chr1.2:76032567-76032586 MS.gene34432:CDS 30.0%
! TCGTCTATTTTCTATTCTCA+TGG - chr1.2:76032390-76032409 MS.gene34432:intron 30.0%
! TGTGGGTTAAGAAAATTTAC+TGG + chr1.2:76031833-76031852 None:intergenic 30.0%
!! ATATTGGCTGAGAAAGTTTT+AGG - chr1.2:76032641-76032660 MS.gene34432:CDS 30.0%
!! CTACAAGAAGTATTATTCCT+AGG + chr1.2:76032551-76032570 None:intergenic 30.0%
!!! ATTCCCAAGCTCATTTTTTA+GGG + chr1.2:76032312-76032331 None:intergenic 30.0%
!!! CAGATTTTAATTGTCTGAAG+AGG - chr1.2:76033509-76033528 MS.gene34432:intron 30.0%
AAATCTGATGATCCCACAAA+CGG - chr1.2:76031870-76031889 MS.gene34432:CDS 35.0%
AACCTAAAACACAGATGGTA+AGG + chr1.2:76032707-76032726 None:intergenic 35.0%
AAGTGTAACAAAAGCCAATG+CGG + chr1.2:76032821-76032840 None:intergenic 35.0%
AGAGTCTTTAGCAATTCTCA+AGG + chr1.2:76033096-76033115 None:intergenic 35.0%
AGGTTGGATCAGATGAATTT+GGG - chr1.2:76032722-76032741 MS.gene34432:intron 35.0%
CATAGTGCCAATCTCAAATT+CGG + chr1.2:76033140-76033159 None:intergenic 35.0%
GACTGGTATAATGAGCATAT+GGG - chr1.2:76033181-76033200 MS.gene34432:intron 35.0%
GTGGAAATGGGATTTATAGT+TGG + chr1.2:76032440-76032459 None:intergenic 35.0%
TAACTTTGGCAAGCTTACTT+TGG + chr1.2:76033482-76033501 None:intergenic 35.0%
TCAAACTGATGGAACCATAA+TGG + chr1.2:76033040-76033059 None:intergenic 35.0%
TGATCACTAAATTTGTGTGC+AGG - chr1.2:76033733-76033752 MS.gene34432:CDS 35.0%
TGTACTTGTAGATTGTACCT+AGG - chr1.2:76032531-76032550 MS.gene34432:CDS 35.0%
TTGCTCTTTATTCTGATGTG+TGG - chr1.2:76033561-76033580 MS.gene34432:intron 35.0%
TTTATTGCAGATCAGTGAAG+AGG - chr1.2:76033333-76033352 MS.gene34432:intron 35.0%
TTTGTTACACTTAGAGCTGA+TGG - chr1.2:76032829-76032848 MS.gene34432:CDS 35.0%
! AATAGATTTTGTGCCTACAG+TGG - chr1.2:76031941-76031960 MS.gene34432:CDS 35.0%
! ATAGATTTTGTGCCTACAGT+GGG - chr1.2:76031942-76031961 MS.gene34432:CDS 35.0%
! ATTGGCATAAGGATGTTTTG+TGG - chr1.2:76031755-76031774 MS.gene34432:intron 35.0%
! GTTGAAGTTCCTTCATTTTG+AGG - chr1.2:76032350-76032369 MS.gene34432:CDS 35.0%
! TAGGTTGGATCAGATGAATT+TGG - chr1.2:76032721-76032740 MS.gene34432:intron 35.0%
! TTCCTTACCATCTGTGTTTT+AGG - chr1.2:76032702-76032721 MS.gene34432:intron 35.0%
!! AGTTTGGCTATTGGCTATTT+TGG - chr1.2:76031689-76031708 MS.gene34432:CDS 35.0%
!! TTACCATCTGTGTTTTAGGT+TGG - chr1.2:76032706-76032725 MS.gene34432:intron 35.0%
!!! CATTCCCAAGCTCATTTTTT+AGG + chr1.2:76032313-76032332 None:intergenic 35.0%
!!! GAGATTACTTTTTTGACTGG+TGG - chr1.2:76033355-76033374 MS.gene34432:intron 35.0%
!!! GAGGAGATTACTTTTTTGAC+TGG - chr1.2:76033352-76033371 MS.gene34432:intron 35.0%
AAAGTAGAACAGGGTGGAAA+TGG + chr1.2:76032453-76032472 None:intergenic 40.0%
AAGTAGAACAGGGTGGAAAT+GGG + chr1.2:76032452-76032471 None:intergenic 40.0%
AATGTGGCCATAAAGACCTT+TGG - chr1.2:76032966-76032985 MS.gene34432:CDS 40.0%
AATTGTTACTGAAGGGTCAG+AGG - chr1.2:76033441-76033460 MS.gene34432:intron 40.0%
ACCTGCAAAACACGAATTGT+GGG + chr1.2:76031850-76031869 None:intergenic 40.0%
AGGAAAAAAGTAGAACAGGG+TGG + chr1.2:76032459-76032478 None:intergenic 40.0%
ATTGTTACTGAAGGGTCAGA+GGG - chr1.2:76033442-76033461 MS.gene34432:intron 40.0%
CAGGTTGTAAAACTTGAGCA+AGG - chr1.2:76033643-76033662 MS.gene34432:CDS 40.0%
GATCACTACTAGTTGAATGC+TGG + chr1.2:76033718-76033737 None:intergenic 40.0%
GATCCAACCTAAAACACAGA+TGG + chr1.2:76032712-76032731 None:intergenic 40.0%
GCATATCAGCACTAGGATTT+CGG + chr1.2:76032876-76032895 None:intergenic 40.0%
GTTAAACCTGTTGACACAAC+TGG - chr1.2:76033785-76033804 MS.gene34432:CDS 40.0%
TACCTCGAAAATACTTGGGT+CGG + chr1.2:76033855-76033874 None:intergenic 40.0%
TACCTGCAAAACACGAATTG+TGG + chr1.2:76031851-76031870 None:intergenic 40.0%
TGGCTCATCAATCAAACTGA+TGG + chr1.2:76033051-76033070 None:intergenic 40.0%
TTGCGAAATATAGCGCTTTC+TGG + chr1.2:76033978-76033997 None:intergenic 40.0%
TTTCTTGAAAGCAGGTGCTT+CGG + chr1.2:76031982-76032001 None:intergenic 40.0%
! CGAATTTGAGATTGGCACTA+TGG - chr1.2:76033138-76033157 MS.gene34432:intron 40.0%
! CTGGAGATGCATTTGTTAGT+GGG - chr1.2:76033810-76033829 MS.gene34432:CDS 40.0%
! GGACTGGTATAATGAGCATA+TGG - chr1.2:76033180-76033199 MS.gene34432:intron 40.0%
! TGATGTGTGGACTGAAATGT+TGG - chr1.2:76033574-76033593 MS.gene34432:intron 40.0%
! TTCATCTGCATTTCTAGGCA+AGG - chr1.2:76032055-76032074 MS.gene34432:intron 40.0%
!! CAGGATTTTAAGGGCAAAGT+TGG - chr1.2:76033752-76033771 MS.gene34432:CDS 40.0%
!! GATTTTAAGGGCAAAGTTGG+AGG - chr1.2:76033755-76033774 MS.gene34432:CDS 40.0%
!!! AGTGGACTGGTTGTTTGTTT+TGG - chr1.2:76031909-76031928 MS.gene34432:CDS 40.0%
AACAAAAGCCAATGCGGTTC+TGG + chr1.2:76032815-76032834 None:intergenic 45.0%
ACGTTGATACATCTGGCATG+CGG - chr1.2:76032776-76032795 MS.gene34432:intron 45.0%
GGATCTAGCCGATGTCATAA+AGG - chr1.2:76033202-76033221 MS.gene34432:intron 45.0%
GTACAACGAAACAAGTGGAC+TGG - chr1.2:76031896-76031915 MS.gene34432:CDS 45.0%
TCGTTGTACTCTCCGTTTGT+GGG + chr1.2:76031885-76031904 None:intergenic 45.0%
TTCGTTGTACTCTCCGTTTG+TGG + chr1.2:76031886-76031905 None:intergenic 45.0%
! ACCCACAATTCGTGTTTTGC+AGG - chr1.2:76031846-76031865 MS.gene34432:intron 45.0%
! GCATCTTTTGTAGGTAGTGC+AGG + chr1.2:76034042-76034061 None:intergenic 45.0%
! GCTGGAGATGCATTTGTTAG+TGG - chr1.2:76033809-76033828 MS.gene34432:CDS 45.0%
! GGAGAGTACAACGAAACAAG+TGG - chr1.2:76031891-76031910 MS.gene34432:CDS 45.0%
! TCCAGAAGCATATCAGCACT+AGG + chr1.2:76032883-76032902 None:intergenic 45.0%
! TGCAGGACAGCATCTTTTGT+AGG + chr1.2:76034051-76034070 None:intergenic 45.0%
! TTCCGACCCAAGTATTTTCG+AGG - chr1.2:76033850-76033869 MS.gene34432:intron 45.0%
!! TCCTAGTGCTGATATGCTTC+TGG - chr1.2:76032879-76032898 MS.gene34432:CDS 45.0%
AATTGCCCCTCTCTCTGTCA+CGG + chr1.2:76034019-76034038 None:intergenic 50.0%
CAGTTGGCATCTCTAGGTTG+GGG - chr1.2:76032030-76032049 MS.gene34432:intron 50.0%
CCAGGAGCTTTCTTGAAAGC+AGG + chr1.2:76031990-76032009 None:intergenic 50.0%
CCTGCTTTCAAGAAAGCTCC+TGG - chr1.2:76031987-76032006 MS.gene34432:intron 50.0%
GATACTCGACGACGAATAGC+AGG - chr1.2:76033624-76033643 MS.gene34432:intron 50.0%
GCAGTTGGCATCTCTAGGTT+GGG - chr1.2:76032029-76032048 MS.gene34432:intron 50.0%
GCTTTCAAGAAAGCTCCTGG+TGG - chr1.2:76031990-76032009 MS.gene34432:intron 50.0%
GGGGGTTCATCTGCATTTCT+AGG - chr1.2:76032050-76032069 MS.gene34432:intron 50.0%
TTCTGATGCCAGAACCGCAT+TGG - chr1.2:76032804-76032823 MS.gene34432:CDS 50.0%
! AGTTGGCATCTCTAGGTTGG+GGG - chr1.2:76032031-76032050 MS.gene34432:intron 50.0%
! CTTGAGCAAGGTTTGCTTCG+AGG - chr1.2:76033655-76033674 MS.gene34432:CDS 50.0%
! GATTTTGTGCCTACAGTGGG+TGG - chr1.2:76031945-76031964 MS.gene34432:CDS 50.0%
!! GCAAGATGAGCTGACTTGCA+TGG + chr1.2:76033071-76033090 None:intergenic 50.0%
ACGTGGCAGTTGGCATCTCT+AGG - chr1.2:76032024-76032043 MS.gene34432:intron 55.0%
AGAGACACTCCACCCACTGT+AGG + chr1.2:76031957-76031976 None:intergenic 55.0%
ATGCCAACTGCCACGTTAGC+GGG + chr1.2:76032020-76032039 None:intergenic 55.0%
CCAGCACCAGTTGTGTCAAC+AGG + chr1.2:76033794-76033813 None:intergenic 55.0%
CCTGTTGACACAACTGGTGC+TGG - chr1.2:76033791-76033810 MS.gene34432:CDS 55.0%
CGATCACCGTGACAGAGAGA+GGG - chr1.2:76034010-76034029 MS.gene34432:intron 55.0%
GATCACCGTGACAGAGAGAG+GGG - chr1.2:76034011-76034030 MS.gene34432:intron 55.0%
GATGCCAACTGCCACGTTAG+CGG + chr1.2:76032021-76032040 None:intergenic 55.0%
GGCAGTTGGCATCTCTAGGT+TGG - chr1.2:76032028-76032047 MS.gene34432:intron 55.0%
! GTTGGCATCTCTAGGTTGGG+GGG - chr1.2:76032032-76032051 MS.gene34432:intron 55.0%
GCGATCACCGTGACAGAGAG+AGG - chr1.2:76034009-76034028 MS.gene34432:intron 60.0%
GGCACTATGGCCATCAGCTG+AGG - chr1.2:76033151-76033170 MS.gene34432:intron 60.0%
GCTCCCGCTAACGTGGCAGT+TGG - chr1.2:76032014-76032033 MS.gene34432:intron 65.0%
GGCCATCAGCTGAGGCTGCT+CGG - chr1.2:76033159-76033178 MS.gene34432:intron 65.0%
GTCCGAGCAGCCTCAGCTGA+TGG + chr1.2:76033164-76033183 None:intergenic 65.0%
TCAGCTGAGGCTGCTCGGAC+TGG - chr1.2:76033164-76033183 MS.gene34432:intron 65.0%
! TGGTGGTGCTCCCGCTAACG+TGG - chr1.2:76032007-76032026 MS.gene34432:intron 65.0%
!! ACGTTAGCGGGAGCACCACC+AGG + chr1.2:76032008-76032027 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 76031633 76034086 76031633 ID=MS.gene34432
chr1.2 mRNA 76031633 76034086 76031633 ID=MS.gene34432.t1;Parent=MS.gene34432
chr1.2 exon 76034080 76034086 76034080 ID=MS.gene34432.t1.exon1;Parent=MS.gene34432.t1
chr1.2 CDS 76034080 76034086 76034080 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
chr1.2 exon 76033643 76033851 76033643 ID=MS.gene34432.t1.exon2;Parent=MS.gene34432.t1
chr1.2 CDS 76033643 76033851 76033643 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
chr1.2 exon 76032783 76032995 76032783 ID=MS.gene34432.t1.exon3;Parent=MS.gene34432.t1
chr1.2 CDS 76032783 76032995 76032783 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
chr1.2 exon 76032496 76032693 76032496 ID=MS.gene34432.t1.exon4;Parent=MS.gene34432.t1
chr1.2 CDS 76032496 76032693 76032496 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
chr1.2 exon 76032236 76032376 76032236 ID=MS.gene34432.t1.exon5;Parent=MS.gene34432.t1
chr1.2 CDS 76032236 76032376 76032236 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
chr1.2 exon 76031848 76031964 76031848 ID=MS.gene34432.t1.exon6;Parent=MS.gene34432.t1
chr1.2 CDS 76031848 76031964 76031848 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
chr1.2 exon 76031633 76031758 76031633 ID=MS.gene34432.t1.exon7;Parent=MS.gene34432.t1
chr1.2 CDS 76031633 76031758 76031633 ID=cds.MS.gene34432.t1;Parent=MS.gene34432.t1
Gene Sequence

>MS.gene34432

ATGGTTGGTAAAGCTTTCCATGTTATAGTTGAATTCAAAATACATGTACTTTATGAAGTTTGGCTATTGGCTATTTTGGATGTCATGTTACCCATGTGAAATGATTCTTTTATTTCATACTAATTGGCATAAGGATGTTTTGTGGTATTTCACATGAAATTATGTCCTATTTTTTTTTAAACTTTTCTGTAGTGCTTCCAGTAAATTTTCTTAACCCACAATTCGTGTTTTGCAGGTAAATCTGATGATCCCACAAACGGAGAGTACAACGAAACAAGTGGACTGGTTGTTTGTTTTGGTGAGTTGTTAATAGATTTTGTGCCTACAGTGGGTGGAGTGTCTCTAGCCGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCCGCTAACGTGGCAGTTGGCATCTCTAGGTTGGGGGGTTCATCTGCATTTCTAGGCAAGGTATATATCTATGTCTATTTATTAGGTGGCTTTTTGTTACTATCTACAAGCCTTCCATGTTTGATTTGTTCAAATATCCATAGTTAAGAAATCTGTATTGTTATAGACTTATAGGTTATTTGAAATTGATTTCACTTCTCTGAATGATTGTTTTAAAAAAGGAATAAAAGAGAGAAAATAAACTTTTGCTTGATCTACTGTGTGTGTTTGTTTATAAGTATACAAATAAATTCCCTAAAAAATGAGCTTGGGAATGTAACATTGTCATGTTTGGTTGAAGTTCCTTCATTTTGAGGAATATCTTTAACTCGTATCGTCTATTTTCTATTCTCATGGAATAGACATCACTTTAATACCTAACCAACTATAAATCCCATTTCCACCCTGTTCTACTTTTTTCCTCTTTTTTTATTGTTGAATTAAATAATTTTTTAAAATATTCCTAGAAATATCATGTACTTGTAGATTGTACCTAGGAATAATACTTCTTGTAGCAGTATACTCAATTTTAGGAATATGAATCTATGTTGGCTGAGAAATTCTGAATTTTAGGAATATGAATCAATATTGGCTGAGAAAGTTTTAGGAATATGAATCAATATTGGCTGAGAAAGTGATAGCTTAATTCCTTACCATCTGTGTTTTAGGTTGGATCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAAAATAACGTTGATACATCTGGCATGCGGTTTGATTCTGATGCCAGAACCGCATTGGCTTTTGTTACACTTAGAGCTGATGGCGAACGCGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTTCTGGATAAGTCAGAGCTTGACCATAATCTCATTGAAAAGGTACCTTGAATTTCCATCTCTGTTTATAAAATGTGGCCATAAAGACCTTTGGTTTAAGTCTGTATAATTTTAACTTAAACTGATTGCAGGCTAAAATATTCCATTATGGTTCCATCAGTTTGATTGATGAGCCATGCAAGTCAGCTCATCTTGCTGCCTTGAGAATTGCTAAAGACTCTGATTGCATTCTCTCATATGATCCGAATTTGAGATTGGCACTATGGCCATCAGCTGAGGCTGCTCGGACTGGTATAATGAGCATATGGGATCTAGCCGATGTCATAAAGGTAAATTTTAGTTGTCTAGTTTTTTACTTTTATACAATACGCTTTATAAATGCCATTACAAGTCATTCTTTTTTCTTTCTTGGAGTCCATCTGAAGTGTTATTTTCTTATTTATTGCAGATCAGTGAAGAGGAGATTACTTTTTTGACTGGTGGTGATGATCCTTATGATGATGATGTTGTATTAAACAAGTTTTTTCACCCTAATCTCAAACTTCTAATTGTTACTGAAGGGTCAGAGGGTTGTAGATATTACACCAAAGTAAGCTTGCCAAAGTTATTTAACTCAGATTTTAATTGTCTGAAGAGGTTTTATAATCCCTCATTGCATTATTTTCTTTGCTCTTTATTCTGATGTGTGGACTGAAATGTTGGTTGTGACGAATGTAAATTAACAAATTTGATACTCGACGACGAATAGCAGGTTGTAAAACTTGAGCAAGGTTTGCTTCGAGGTTCAATAATTCACAGTACTATCTTGTCAAGTGAGTGACCAGCATTCAACTAGTAGTGATCACTAAATTTGTGTGCAGGATTTTAAGGGCAAAGTTGGAGGTGTCAATGTTAAACCTGTTGACACAACTGGTGCTGGAGATGCATTTGTTAGTGGGATTCTCTACAACATAGCTTCCGACCCAAGTATTTTCGAGGTAATTCAGATATTTTTACACATTCTAGTTGTTTATTCAGAAAAAAGTTATGAACGTTCGGAATTTGATGAAGTTATTTTATGTTGCAGAATGAGGAGCATCTCCAGAAAGCGCTATATTTCGCAAATGTATGTGGTGCGATCACCGTGACAGAGAGAGGGGCAATTCCTGCACTACCTACAAAAGATGCTGTCCTGCAATTCAATGCAAAATAG
Protein sequence

>MS.gene34432.t1

MVGKSDDPTNGEYNETSGLVVCFGELLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFLGKVGSDEFGYMLADILKQNNVDTSGMRFDSDARTALAFVTLRADGEREFLFFRNPSADMLLDKSELDHNLIEKAKIFHYGSISLIDEPCKSAHLAALRIAKDSDCILSYDPNLRLALWPSAEAARTGIMSIWDLADVIKISEEEITFLTGGDDPYDDDVVLNKFFHPNLKLLIVTEGSEGCRYYTKDFKGKVGGVNVKPVDTTGAGDAFVSGILYNIASDPSIFENEEHLQKALYFANVCGAITVTERGAIPALPTKDAVLQFNAK