Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34590.t1 | XP_013443044.1 | 91.3 | 436 | 38 | 0 | 1 | 436 | 1 | 436 | 1.90E-185 | 658.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34590.t1 | Q8LPG9 | 27.0 | 300 | 165 | 11 | 158 | 426 | 379 | 655 | 6.5e-09 | 63.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34590.t1 | G7ZWB7 | 91.3 | 436 | 38 | 0 | 1 | 436 | 1 | 436 | 1.4e-185 | 658.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene34590 | 0.813005 | 3.19E-51 | -1.69E-46 |
MS.gene049328 | MS.gene34590 | 0.822105 | 2.83E-53 | -1.69E-46 |
MS.gene050901 | MS.gene34590 | 0.803476 | 3.42E-49 | -1.69E-46 |
MS.gene05157 | MS.gene34590 | 0.810292 | 1.24E-50 | -1.69E-46 |
MS.gene051744 | MS.gene34590 | 0.811486 | 6.83E-51 | -1.69E-46 |
MS.gene053144 | MS.gene34590 | 0.831387 | 1.72E-55 | -1.69E-46 |
MS.gene054584 | MS.gene34590 | 0.829099 | 6.22E-55 | -1.69E-46 |
MS.gene055465 | MS.gene34590 | 0.826685 | 2.37E-54 | -1.69E-46 |
MS.gene055466 | MS.gene34590 | 0.813606 | 2.35E-51 | -1.69E-46 |
MS.gene055537 | MS.gene34590 | 0.810662 | 1.03E-50 | -1.69E-46 |
MS.gene055580 | MS.gene34590 | -0.802943 | 4.41E-49 | -1.69E-46 |
MS.gene055890 | MS.gene34590 | 0.809338 | 1.99E-50 | -1.69E-46 |
MS.gene056228 | MS.gene34590 | 0.806136 | 9.52E-50 | -1.69E-46 |
MS.gene05894 | MS.gene34590 | 0.805376 | 1.38E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34590.t1 | MTR_0047s0040 | 95.642 | 436 | 19 | 0 | 1 | 436 | 1 | 436 | 0.0 | 857 |
MS.gene34590.t1 | MTR_7g114700 | 52.657 | 414 | 144 | 11 | 5 | 376 | 3 | 406 | 1.09e-124 | 369 |
MS.gene34590.t1 | MTR_1g051810 | 33.594 | 384 | 208 | 9 | 4 | 365 | 3 | 361 | 7.63e-44 | 157 |
MS.gene34590.t1 | MTR_4g087420 | 30.052 | 386 | 204 | 14 | 100 | 427 | 145 | 522 | 3.17e-34 | 134 |
MS.gene34590.t1 | MTR_1g066800 | 29.540 | 413 | 220 | 14 | 1 | 348 | 1 | 407 | 9.59e-32 | 126 |
MS.gene34590.t1 | MTR_1g066800 | 29.551 | 423 | 212 | 16 | 1 | 348 | 1 | 412 | 1.34e-31 | 126 |
MS.gene34590.t1 | MTR_7g100790 | 30.952 | 462 | 209 | 22 | 4 | 380 | 3 | 439 | 1.59e-29 | 120 |
MS.gene34590.t1 | MTR_6g033415 | 32.292 | 288 | 152 | 8 | 100 | 348 | 106 | 389 | 1.57e-27 | 114 |
MS.gene34590.t1 | MTR_1g095740 | 26.855 | 283 | 177 | 6 | 92 | 364 | 132 | 394 | 1.01e-23 | 103 |
MS.gene34590.t1 | MTR_8g024540 | 29.206 | 315 | 150 | 13 | 1 | 257 | 1 | 300 | 3.18e-23 | 102 |
MS.gene34590.t1 | MTR_3g091560 | 27.013 | 385 | 236 | 10 | 1 | 357 | 1 | 368 | 9.94e-22 | 97.4 |
MS.gene34590.t1 | MTR_4g050480 | 28.889 | 360 | 197 | 12 | 100 | 426 | 95 | 428 | 7.10e-21 | 94.7 |
MS.gene34590.t1 | MTR_4g050480 | 28.889 | 360 | 197 | 12 | 100 | 426 | 96 | 429 | 7.15e-21 | 94.7 |
MS.gene34590.t1 | MTR_1g103070 | 31.716 | 268 | 145 | 11 | 97 | 356 | 132 | 369 | 7.70e-21 | 94.7 |
MS.gene34590.t1 | MTR_1g007920 | 27.707 | 314 | 175 | 10 | 100 | 368 | 121 | 427 | 1.44e-19 | 91.3 |
MS.gene34590.t1 | MTR_1g007920 | 27.707 | 314 | 175 | 10 | 100 | 368 | 96 | 402 | 1.79e-19 | 90.9 |
MS.gene34590.t1 | MTR_8g102400 | 41.270 | 126 | 50 | 4 | 47 | 159 | 56 | 170 | 2.48e-18 | 87.0 |
MS.gene34590.t1 | MTR_3g104570 | 28.448 | 232 | 138 | 5 | 60 | 268 | 50 | 276 | 2.99e-18 | 87.0 |
MS.gene34590.t1 | MTR_1g101330 | 30.500 | 200 | 105 | 6 | 9 | 180 | 1 | 194 | 3.07e-17 | 84.0 |
MS.gene34590.t1 | MTR_0019s0070 | 45.570 | 79 | 41 | 1 | 92 | 168 | 106 | 184 | 1.47e-16 | 82.0 |
MS.gene34590.t1 | MTR_2g015370 | 33.908 | 174 | 82 | 4 | 99 | 254 | 61 | 219 | 2.06e-16 | 79.7 |
MS.gene34590.t1 | MTR_4g102840 | 27.508 | 309 | 173 | 9 | 86 | 356 | 76 | 371 | 2.38e-16 | 81.3 |
MS.gene34590.t1 | MTR_8g074730 | 34.211 | 152 | 75 | 6 | 31 | 173 | 5 | 140 | 4.43e-16 | 75.5 |
MS.gene34590.t1 | MTR_1g041430 | 62.069 | 58 | 22 | 0 | 96 | 153 | 106 | 163 | 5.98e-16 | 79.7 |
MS.gene34590.t1 | MTR_4g108140 | 36.697 | 109 | 64 | 1 | 51 | 159 | 54 | 157 | 1.55e-15 | 79.3 |
MS.gene34590.t1 | MTR_4g108140 | 35.156 | 128 | 75 | 2 | 51 | 178 | 55 | 174 | 1.59e-15 | 79.0 |
MS.gene34590.t1 | MTR_8g014580 | 47.500 | 80 | 42 | 0 | 100 | 179 | 125 | 204 | 2.52e-15 | 77.8 |
MS.gene34590.t1 | MTR_2g100740 | 34.437 | 151 | 80 | 4 | 32 | 163 | 9 | 159 | 3.25e-15 | 77.0 |
MS.gene34590.t1 | MTR_7g114870 | 50.000 | 66 | 33 | 0 | 103 | 168 | 108 | 173 | 7.96e-15 | 76.3 |
MS.gene34590.t1 | MTR_1g023760 | 42.683 | 82 | 45 | 1 | 94 | 173 | 117 | 198 | 7.62e-12 | 67.8 |
MS.gene34590.t1 | MTR_8g017570 | 37.209 | 172 | 101 | 4 | 60 | 228 | 47 | 214 | 2.27e-11 | 65.9 |
MS.gene34590.t1 | MTR_2g078210 | 26.190 | 210 | 133 | 5 | 64 | 254 | 26 | 232 | 3.50e-11 | 64.3 |
MS.gene34590.t1 | MTR_2g078210 | 28.313 | 166 | 108 | 4 | 97 | 254 | 10 | 172 | 6.94e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34590.t1 | AT5G13460 | 47.021 | 470 | 183 | 18 | 4 | 436 | 3 | 443 | 1.10e-115 | 346 |
MS.gene34590.t1 | AT5G03960 | 34.456 | 386 | 212 | 13 | 4 | 367 | 3 | 369 | 1.56e-39 | 147 |
MS.gene34590.t1 | AT5G03960 | 34.456 | 386 | 212 | 13 | 4 | 367 | 3 | 369 | 1.56e-39 | 147 |
MS.gene34590.t1 | AT5G03960 | 34.197 | 386 | 212 | 14 | 4 | 367 | 3 | 368 | 2.17e-37 | 140 |
MS.gene34590.t1 | AT3G52290 | 30.867 | 392 | 211 | 14 | 6 | 348 | 3 | 383 | 3.47e-37 | 140 |
MS.gene34590.t1 | AT2G43680 | 31.461 | 356 | 196 | 12 | 99 | 426 | 320 | 655 | 2.51e-36 | 141 |
MS.gene34590.t1 | AT2G43680 | 31.461 | 356 | 196 | 12 | 99 | 426 | 320 | 655 | 2.51e-36 | 141 |
MS.gene34590.t1 | AT2G43680 | 31.461 | 356 | 196 | 12 | 99 | 426 | 320 | 655 | 2.51e-36 | 141 |
MS.gene34590.t1 | AT2G43680 | 31.461 | 356 | 196 | 12 | 99 | 426 | 320 | 655 | 2.51e-36 | 141 |
MS.gene34590.t1 | AT2G43680 | 31.461 | 356 | 196 | 12 | 99 | 426 | 321 | 656 | 2.52e-36 | 141 |
MS.gene34590.t1 | AT3G59690 | 33.333 | 279 | 155 | 6 | 99 | 356 | 167 | 435 | 8.05e-34 | 133 |
MS.gene34590.t1 | AT3G59690 | 33.333 | 279 | 155 | 6 | 99 | 356 | 167 | 435 | 8.05e-34 | 133 |
MS.gene34590.t1 | AT5G03040 | 29.056 | 413 | 224 | 16 | 1 | 351 | 1 | 406 | 5.93e-31 | 124 |
MS.gene34590.t1 | AT5G03040 | 29.056 | 413 | 224 | 16 | 1 | 351 | 1 | 406 | 5.93e-31 | 124 |
MS.gene34590.t1 | AT5G03040 | 29.056 | 413 | 224 | 16 | 1 | 351 | 1 | 406 | 5.93e-31 | 124 |
MS.gene34590.t1 | AT4G10640 | 29.925 | 401 | 201 | 17 | 1 | 356 | 1 | 366 | 2.27e-25 | 107 |
MS.gene34590.t1 | AT3G49260 | 29.078 | 282 | 153 | 11 | 103 | 348 | 122 | 392 | 4.43e-23 | 101 |
MS.gene34590.t1 | AT3G49260 | 29.078 | 282 | 153 | 11 | 103 | 348 | 122 | 392 | 4.43e-23 | 101 |
MS.gene34590.t1 | AT3G49260 | 29.078 | 282 | 153 | 11 | 103 | 348 | 122 | 392 | 4.43e-23 | 101 |
MS.gene34590.t1 | AT1G01110 | 27.595 | 395 | 188 | 14 | 92 | 406 | 112 | 488 | 5.01e-23 | 102 |
MS.gene34590.t1 | AT3G49260 | 28.369 | 282 | 156 | 10 | 103 | 348 | 122 | 393 | 1.17e-22 | 100 |
MS.gene34590.t1 | AT2G26180 | 29.878 | 328 | 183 | 12 | 60 | 349 | 47 | 365 | 3.12e-21 | 95.9 |
MS.gene34590.t1 | AT4G14750 | 30.918 | 207 | 117 | 5 | 2 | 194 | 14 | 208 | 3.56e-20 | 92.4 |
MS.gene34590.t1 | AT4G14750 | 30.918 | 207 | 117 | 5 | 2 | 194 | 73 | 267 | 4.65e-20 | 92.4 |
MS.gene34590.t1 | AT4G14750 | 30.918 | 207 | 117 | 5 | 2 | 194 | 73 | 267 | 5.63e-20 | 92.4 |
MS.gene34590.t1 | AT4G00820 | 31.148 | 244 | 125 | 9 | 39 | 254 | 74 | 302 | 7.38e-20 | 92.4 |
MS.gene34590.t1 | AT1G72670 | 29.643 | 280 | 148 | 10 | 100 | 348 | 92 | 353 | 5.65e-19 | 89.0 |
MS.gene34590.t1 | AT3G09710 | 27.394 | 376 | 215 | 14 | 57 | 380 | 60 | 429 | 2.75e-18 | 87.0 |
MS.gene34590.t1 | AT3G09710 | 27.202 | 386 | 217 | 13 | 57 | 380 | 60 | 443 | 2.80e-18 | 87.4 |
MS.gene34590.t1 | AT1G17480 | 37.121 | 132 | 69 | 3 | 100 | 231 | 93 | 210 | 1.27e-17 | 84.3 |
MS.gene34590.t1 | AT3G22190 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.45e-17 | 84.0 |
MS.gene34590.t1 | AT3G22190 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.45e-17 | 84.0 |
MS.gene34590.t1 | AT3G22190 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.45e-17 | 84.0 |
MS.gene34590.t1 | AT3G22190 | 33.511 | 188 | 107 | 5 | 103 | 279 | 90 | 270 | 2.45e-17 | 84.0 |
MS.gene34590.t1 | AT2G33990 | 33.537 | 164 | 99 | 4 | 101 | 257 | 47 | 207 | 1.38e-16 | 79.7 |
MS.gene34590.t1 | AT4G23060 | 29.206 | 315 | 153 | 10 | 97 | 378 | 163 | 440 | 2.77e-16 | 81.3 |
MS.gene34590.t1 | AT2G26410 | 28.421 | 190 | 124 | 4 | 94 | 273 | 141 | 328 | 4.56e-16 | 80.9 |
MS.gene34590.t1 | AT2G26410 | 28.421 | 190 | 124 | 4 | 94 | 273 | 141 | 328 | 4.56e-16 | 80.9 |
MS.gene34590.t1 | AT3G16490 | 50.000 | 66 | 33 | 0 | 99 | 164 | 105 | 170 | 1.46e-15 | 78.6 |
MS.gene34590.t1 | AT1G18840 | 41.228 | 114 | 57 | 4 | 56 | 164 | 64 | 172 | 2.65e-15 | 78.6 |
MS.gene34590.t1 | AT1G18840 | 41.228 | 114 | 57 | 4 | 56 | 164 | 64 | 172 | 2.65e-15 | 78.6 |
MS.gene34590.t1 | AT1G18840 | 41.228 | 114 | 57 | 4 | 56 | 164 | 64 | 172 | 2.65e-15 | 78.6 |
MS.gene34590.t1 | AT1G74690 | 46.154 | 91 | 31 | 2 | 94 | 169 | 109 | 196 | 1.14e-14 | 76.6 |
MS.gene34590.t1 | AT1G51960 | 53.226 | 62 | 29 | 0 | 103 | 164 | 102 | 163 | 1.41e-14 | 75.1 |
MS.gene34590.t1 | AT4G29150 | 47.887 | 71 | 37 | 0 | 89 | 159 | 119 | 189 | 1.50e-14 | 75.5 |
MS.gene34590.t1 | AT5G07240 | 52.542 | 59 | 28 | 0 | 103 | 161 | 108 | 166 | 4.12e-14 | 74.3 |
MS.gene34590.t1 | AT5G07240 | 52.542 | 59 | 28 | 0 | 103 | 161 | 154 | 212 | 4.91e-14 | 74.3 |
MS.gene34590.t1 | AT3G49380 | 36.296 | 135 | 71 | 4 | 24 | 157 | 46 | 166 | 8.02e-14 | 72.8 |
MS.gene34590.t1 | AT5G62070 | 55.556 | 54 | 24 | 0 | 102 | 155 | 118 | 171 | 1.43e-13 | 72.4 |
MS.gene34590.t1 | AT3G15050 | 32.704 | 159 | 100 | 3 | 75 | 232 | 26 | 178 | 4.16e-12 | 66.6 |
MS.gene34590.t1 | AT3G51380 | 42.169 | 83 | 46 | 1 | 82 | 164 | 20 | 100 | 3.07e-11 | 60.5 |
MS.gene34590.t1 | AT1G14380 | 37.190 | 121 | 64 | 3 | 40 | 159 | 43 | 152 | 3.35e-11 | 65.9 |
MS.gene34590.t1 | AT1G14380 | 37.190 | 121 | 64 | 3 | 40 | 159 | 43 | 152 | 3.68e-11 | 65.5 |
MS.gene34590.t1 | AT1G14380 | 37.190 | 121 | 64 | 3 | 40 | 159 | 43 | 152 | 3.68e-11 | 65.5 |
MS.gene34590.t1 | AT1G14380 | 37.190 | 121 | 64 | 3 | 40 | 159 | 43 | 152 | 3.68e-11 | 65.5 |
MS.gene34590.t1 | AT1G14380 | 36.000 | 125 | 68 | 3 | 40 | 163 | 43 | 156 | 4.38e-11 | 65.5 |
MS.gene34590.t1 | AT1G14380 | 36.000 | 125 | 68 | 3 | 40 | 163 | 43 | 156 | 4.38e-11 | 65.5 |
MS.gene34590.t1 | AT1G14380 | 36.000 | 125 | 68 | 3 | 40 | 163 | 43 | 156 | 4.38e-11 | 65.5 |
Find 72 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAAAATCGGTGACGAATT+TGG | 0.168969 | 4.3:+59119446 | MS.gene34590:CDS |
TTCAAATGGTTGAAGGAAAA+TGG | 0.172687 | 4.3:+59118709 | MS.gene34590:CDS |
GTTCTAAAGACAAGATAATT+AGG | 0.184028 | 4.3:+59118760 | MS.gene34590:CDS |
TCAAAATTCAAACTGCCTTT+AGG | 0.203753 | 4.3:+59117407 | MS.gene34590:CDS |
CAGATAGCTCACTGCCTAAT+TGG | 0.230370 | 4.3:+59119888 | MS.gene34590:CDS |
CAAAATTCAAACTGCCTTTA+GGG | 0.238522 | 4.3:+59117408 | MS.gene34590:CDS |
TCCAATCCTTCAAGTGGATT+TGG | 0.245472 | 4.3:-59119509 | None:intergenic |
CACTAAGTTTGCCTCTATTA+AGG | 0.272675 | 4.3:-59119778 | None:intergenic |
AAAAGAAGGAAATGGATATT+TGG | 0.296004 | 4.3:+59117178 | MS.gene34590:CDS |
TAATTCCAAGACCTTGCTTT+TGG | 0.317035 | 4.3:-59119680 | None:intergenic |
TATTCTTTCTCTCTTAATAA+TGG | 0.318278 | 4.3:-59118977 | None:intergenic |
GAACTTTGTCTATCCCAATT+AGG | 0.328904 | 4.3:-59119902 | None:intergenic |
ATCTTCAGAATCAGAATGTT+TGG | 0.344137 | 4.3:-59117275 | None:intergenic |
GCCATGTATGCCGGAGTTGC+CGG | 0.349143 | 4.3:-59119614 | None:intergenic |
AAAATCAAGCAGGACTATAA+AGG | 0.350189 | 4.3:+59119850 | MS.gene34590:CDS |
AGAAGGAGAAAAGAAGGAAA+TGG | 0.396134 | 4.3:+59117170 | MS.gene34590:intron |
GTATCATTAGCTTCATTTGA+AGG | 0.398734 | 4.3:-59119924 | None:intergenic |
TCCAAATCCACTTGAAGGAT+TGG | 0.400850 | 4.3:+59119508 | MS.gene34590:CDS |
CCGGAGAGCTTGAAAATGAT+TGG | 0.404332 | 4.3:-59119595 | None:intergenic |
TACAGCTCACATTCTAAAAT+CGG | 0.405037 | 4.3:+59119434 | MS.gene34590:CDS |
TAAAACTAGGAGATCTTTGT+TGG | 0.405800 | 4.3:-59119808 | None:intergenic |
AGATAGCTCACTGCCTAATT+GGG | 0.412832 | 4.3:+59119889 | MS.gene34590:CDS |
TCAAATGGTTGAAGGAAAAT+GGG | 0.421400 | 4.3:+59118710 | MS.gene34590:CDS |
CTTAATAGAGGCAAACTTAG+TGG | 0.433229 | 4.3:+59119779 | MS.gene34590:CDS |
TCAGAAAGAAGTAAAGTGAA+TGG | 0.437880 | 4.3:+59119332 | MS.gene34590:CDS |
AAAATTCTTTAATCTCCCTC+TGG | 0.440216 | 4.3:-59117378 | None:intergenic |
TTCTAAAGACAAGATAATTA+GGG | 0.440984 | 4.3:+59118761 | MS.gene34590:CDS |
GTTCACCAAAAGCAAGGTCT+TGG | 0.448573 | 4.3:+59119675 | MS.gene34590:CDS |
GAATTTCTTGAAAATAGTAT+TGG | 0.453636 | 4.3:-59119536 | None:intergenic |
CAAAATCCAAATCCACTTGA+AGG | 0.466067 | 4.3:+59119503 | MS.gene34590:CDS |
GAGGTACTGGCTGGAGCAAT+GGG | 0.470588 | 4.3:+59119361 | MS.gene34590:CDS |
CACAGGAGGAAGTGTTCAAT+AGG | 0.472141 | 4.3:+59119566 | MS.gene34590:CDS |
TCCGGCAACTCCGGCATACA+TGG | 0.476116 | 4.3:+59119613 | MS.gene34590:CDS |
GAAGTAAAGTGAATGGAAGA+TGG | 0.476780 | 4.3:+59119339 | MS.gene34590:CDS |
GAAGGCCTTGAGGGCATTGA+AGG | 0.479233 | 4.3:+59118569 | MS.gene34590:CDS |
TCCTTGCACAAATCTCTGAT+TGG | 0.481690 | 4.3:-59118683 | None:intergenic |
TCTTCAGAGTATTCATAGCT+TGG | 0.482970 | 4.3:-59118638 | None:intergenic |
AACAGTGAAGTCCTTAATAG+AGG | 0.490528 | 4.3:+59119767 | MS.gene34590:CDS |
TGTTCATGGACAGGCAAAGA+AGG | 0.491711 | 4.3:+59118551 | MS.gene34590:intron |
TTGTGCAAGGAGACTTCAAA+TGG | 0.498467 | 4.3:+59118695 | MS.gene34590:CDS |
ACAGGCAAAGAAGGCCTTGA+GGG | 0.502406 | 4.3:+59118560 | MS.gene34590:intron |
GGAGGTACTGGCTGGAGCAA+TGG | 0.509178 | 4.3:+59119360 | MS.gene34590:CDS |
ACTCACAAGGTAACCCCTAA+AGG | 0.511074 | 4.3:-59117422 | None:intergenic |
TTCAAGCTCTCCGGCAACTC+CGG | 0.516297 | 4.3:+59119604 | MS.gene34590:CDS |
GGATGACAGTACTTTATTGA+AGG | 0.531553 | 4.3:+59118918 | MS.gene34590:CDS |
GAAGGAAATGGATATTTGGA+AGG | 0.532923 | 4.3:+59117182 | MS.gene34590:CDS |
AGGAGACTTCAAATGGTTGA+AGG | 0.539117 | 4.3:+59118702 | MS.gene34590:CDS |
CAGTACTTTATTGAAGGAAG+AGG | 0.539274 | 4.3:+59118924 | MS.gene34590:CDS |
ACTCAAACAGTCAAAGAAAG+TGG | 0.539967 | 4.3:+59118896 | MS.gene34590:CDS |
TGAATGGAAGATGGAGGTAC+TGG | 0.544699 | 4.3:+59119348 | MS.gene34590:CDS |
AAACTTCAAGCTATCATTCG+TGG | 0.550272 | 4.3:+59118600 | MS.gene34590:CDS |
TCAGTAGCAGCCATGTATGC+CGG | 0.554373 | 4.3:-59119623 | None:intergenic |
TGGAAGATGGAGGTACTGGC+TGG | 0.555626 | 4.3:+59119352 | MS.gene34590:CDS |
CTCAACCTATCAAAATCCAG+AGG | 0.560910 | 4.3:+59117362 | MS.gene34590:CDS |
AAAATTCAAACTGCCTTTAG+GGG | 0.573375 | 4.3:+59117409 | MS.gene34590:CDS |
CTCACATTCTACACAAGAGA+AGG | 0.576649 | 4.3:+59117033 | MS.gene34590:CDS |
GGTGAATCCAATCCTTCAAG+TGG | 0.583243 | 4.3:-59119515 | None:intergenic |
TATTCCCTTCAATGCCCTCA+AGG | 0.584662 | 4.3:-59118574 | None:intergenic |
ACTGAAATACCCTTAAAACT+AGG | 0.588800 | 4.3:-59119821 | None:intergenic |
CTCAAACAGTCAAAGAAAGT+GGG | 0.591986 | 4.3:+59118897 | MS.gene34590:CDS |
CAGTGCCTATAAAATCAAGC+AGG | 0.595648 | 4.3:+59119840 | MS.gene34590:CDS |
GCTGGTTTAATCTAGTGAAG+AGG | 0.596678 | 4.3:+59116996 | MS.gene34590:CDS |
AACTTCAAGCTATCATTCGT+GGG | 0.601912 | 4.3:+59118601 | MS.gene34590:CDS |
GTAAAGTGAATGGAAGATGG+AGG | 0.607160 | 4.3:+59119342 | MS.gene34590:CDS |
CAACAAGTTCACCAAAAGCA+AGG | 0.636655 | 4.3:+59119669 | MS.gene34590:CDS |
AACAGTATCAAAAGAAACAG+AGG | 0.638238 | 4.3:+59117243 | MS.gene34590:CDS |
AAGGCCTTGAGGGCATTGAA+GGG | 0.639367 | 4.3:+59118570 | MS.gene34590:CDS |
TCAACCTATCAAAATCCAGA+GGG | 0.651212 | 4.3:+59117363 | MS.gene34590:CDS |
GACAGGCAAAGAAGGCCTTG+AGG | 0.658532 | 4.3:+59118559 | MS.gene34590:intron |
TCCAATCAGAGATTTGTGCA+AGG | 0.659110 | 4.3:+59118682 | MS.gene34590:CDS |
ATTGAACACTTCCTCCTGTG+AGG | 0.674211 | 4.3:-59119563 | None:intergenic |
AGTATCAAAAGAAACAGAGG+AGG | 0.691149 | 4.3:+59117246 | MS.gene34590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GGTTTTTAAATTTAAAATAT+AGG | + | chr4.3:59117801-59117820 | MS.gene34590:intron | 10.0% |
!! | ATCAAAAATATATATGAGTT+AGG | - | chr4.3:59119034-59119053 | None:intergenic | 15.0% |
!!! | AAAAAAAAAGTATCATAACT+AGG | + | chr4.3:59117960-59117979 | MS.gene34590:intron | 15.0% |
!! | ATTTAAAGAGAAAGTTGTAA+AGG | + | chr4.3:59118463-59118482 | MS.gene34590:intron | 20.0% |
!! | GAATTTCTTGAAAATAGTAT+TGG | - | chr4.3:59119539-59119558 | None:intergenic | 20.0% |
!! | TAAGTAAGTAAAAGAAACAA+TGG | + | chr4.3:59118493-59118512 | MS.gene34590:intron | 20.0% |
!! | TATTCTTTCTCTCTTAATAA+TGG | - | chr4.3:59118980-59118999 | None:intergenic | 20.0% |
!! | TTATGACAAAAGATAAAACA+AGG | + | chr4.3:59119154-59119173 | MS.gene34590:intron | 20.0% |
!!! | AAAACCTTAATATTTTCAGA+AGG | + | chr4.3:59117153-59117172 | MS.gene34590:intron | 20.0% |
!!! | TGAATTTTCTCATTTTTAGA+TGG | + | chr4.3:59118873-59118892 | MS.gene34590:intron | 20.0% |
!!! | TTCTAAAGACAAGATAATTA+GGG | + | chr4.3:59118761-59118780 | MS.gene34590:CDS | 20.0% |
! | AAAAGAAGGAAATGGATATT+TGG | + | chr4.3:59117178-59117197 | MS.gene34590:CDS | 25.0% |
! | AAATCGACAAAGAAAAATCT+TGG | + | chr4.3:59118031-59118050 | MS.gene34590:intron | 25.0% |
! | ACAAAGAAAAATCTTGGAAA+GGG | + | chr4.3:59118037-59118056 | MS.gene34590:intron | 25.0% |
! | ATAGGAACATAATCAATTTG+AGG | - | chr4.3:59118365-59118384 | None:intergenic | 25.0% |
! | ATAGTACAGTTAATGATAGT+GGG | + | chr4.3:59117678-59117697 | MS.gene34590:intron | 25.0% |
! | ATATGAATGTTACTAGAAGA+AGG | + | chr4.3:59117780-59117799 | MS.gene34590:intron | 25.0% |
! | GTAAAGGAAATCTAGTAAAT+TGG | - | chr4.3:59118233-59118252 | None:intergenic | 25.0% |
! | TATGACTAAAGCTTATAGTA+AGG | - | chr4.3:59118522-59118541 | None:intergenic | 25.0% |
!! | TCATAGTATTTTCTTGTTCA+TGG | + | chr4.3:59118537-59118556 | MS.gene34590:intron | 25.0% |
!! | TTCTCCTTCTGAAAATATTA+AGG | - | chr4.3:59117160-59117179 | None:intergenic | 25.0% |
!!! | ATTGATAACTTTTTCTTGCA+AGG | - | chr4.3:59119734-59119753 | None:intergenic | 25.0% |
!!! | GTTCTAAAGACAAGATAATT+AGG | + | chr4.3:59118760-59118779 | MS.gene34590:CDS | 25.0% |
AAAATCAAGCAGGACTATAA+AGG | + | chr4.3:59119850-59119869 | MS.gene34590:CDS | 30.0% | |
AAAATTCAAACTGCCTTTAG+GGG | + | chr4.3:59117409-59117428 | MS.gene34590:CDS | 30.0% | |
AAAATTCTTTAATCTCCCTC+TGG | - | chr4.3:59117381-59117400 | None:intergenic | 30.0% | |
AACAGTATCAAAAGAAACAG+AGG | + | chr4.3:59117243-59117262 | MS.gene34590:CDS | 30.0% | |
ACTAAAGATTATGCAAAAGG+AGG | - | chr4.3:59117477-59117496 | None:intergenic | 30.0% | |
ACTGAAATACCCTTAAAACT+AGG | - | chr4.3:59119824-59119843 | None:intergenic | 30.0% | |
AGCACTAAAGATTATGCAAA+AGG | - | chr4.3:59117480-59117499 | None:intergenic | 30.0% | |
AGTATATTATCGAGAACATG+TGG | + | chr4.3:59118084-59118103 | MS.gene34590:intron | 30.0% | |
ATCTTCAGAATCAGAATGTT+TGG | - | chr4.3:59117278-59117297 | None:intergenic | 30.0% | |
ATTATGCAAAAGGAGGATTT+AGG | - | chr4.3:59117470-59117489 | None:intergenic | 30.0% | |
CAAAATTCAAACTGCCTTTA+GGG | + | chr4.3:59117408-59117427 | MS.gene34590:CDS | 30.0% | |
CAAAGAAAAATCTTGGAAAG+GGG | + | chr4.3:59118038-59118057 | MS.gene34590:intron | 30.0% | |
CATAGTACAGTTAATGATAG+TGG | + | chr4.3:59117677-59117696 | MS.gene34590:intron | 30.0% | |
GACAAAGAAAAATCTTGGAA+AGG | + | chr4.3:59118036-59118055 | MS.gene34590:intron | 30.0% | |
TAAAACTAGGAGATCTTTGT+TGG | - | chr4.3:59119811-59119830 | None:intergenic | 30.0% | |
TCAAAATTCAAACTGCCTTT+AGG | + | chr4.3:59117407-59117426 | MS.gene34590:CDS | 30.0% | |
TCAAATGGTTGAAGGAAAAT+GGG | + | chr4.3:59118710-59118729 | MS.gene34590:CDS | 30.0% | |
TCAGAAAGAAGTAAAGTGAA+TGG | + | chr4.3:59119332-59119351 | MS.gene34590:CDS | 30.0% | |
TGATTATGTTCCTATTGTGT+TGG | + | chr4.3:59118370-59118389 | MS.gene34590:intron | 30.0% | |
TTATTGCTGTGATTTAGTCA+GGG | - | chr4.3:59117830-59117849 | None:intergenic | 30.0% | |
TTCAAATGGTTGAAGGAAAA+TGG | + | chr4.3:59118709-59118728 | MS.gene34590:CDS | 30.0% | |
TTTATTGCTGTGATTTAGTC+AGG | - | chr4.3:59117831-59117850 | None:intergenic | 30.0% | |
! | AAAGGCAGTTTGAATTTTGA+TGG | - | chr4.3:59117407-59117426 | None:intergenic | 30.0% |
! | ATAGTCCTGCTTGATTTTAT+AGG | - | chr4.3:59119848-59119867 | None:intergenic | 30.0% |
! | ATTTTCAGAAGGAGAAAAGA+AGG | + | chr4.3:59117164-59117183 | MS.gene34590:intron | 30.0% |
! | TGTTTCTTTTGATACTGTTG+GGG | - | chr4.3:59117242-59117261 | None:intergenic | 30.0% |
!! | AGTTTGTTATAAACCCACTT+AGG | + | chr4.3:59117526-59117545 | MS.gene34590:intron | 30.0% |
!! | CTGTTTCTTTTGATACTGTT+GGG | - | chr4.3:59117243-59117262 | None:intergenic | 30.0% |
!! | TACAGCTCACATTCTAAAAT+CGG | + | chr4.3:59119434-59119453 | MS.gene34590:CDS | 30.0% |
!! | TCTGTTTCTTTTGATACTGT+TGG | - | chr4.3:59117244-59117263 | None:intergenic | 30.0% |
!!! | ACAAAGATCTCCTAGTTTTA+AGG | + | chr4.3:59119811-59119830 | MS.gene34590:CDS | 30.0% |
!!! | CAAAGATCTCCTAGTTTTAA+GGG | + | chr4.3:59119812-59119831 | MS.gene34590:CDS | 30.0% |
AAACTTCAAGCTATCATTCG+TGG | + | chr4.3:59118600-59118619 | MS.gene34590:CDS | 35.0% | |
AACAGTGAAGTCCTTAATAG+AGG | + | chr4.3:59119767-59119786 | MS.gene34590:CDS | 35.0% | |
AACTTATACAAACCCTACAG+AGG | + | chr4.3:59119300-59119319 | MS.gene34590:intron | 35.0% | |
AACTTCAAGCTATCATTCGT+GGG | + | chr4.3:59118601-59118620 | MS.gene34590:CDS | 35.0% | |
AAGCATTTGAGAGACTGTTT+GGG | - | chr4.3:59119245-59119264 | None:intergenic | 35.0% | |
ACAAGCTTCTGCTTCAAAAA+AGG | - | chr4.3:59118192-59118211 | None:intergenic | 35.0% | |
ACCAGCAAAGAATCAATTTG+AGG | - | chr4.3:59118268-59118287 | None:intergenic | 35.0% | |
ACTCAAACAGTCAAAGAAAG+TGG | + | chr4.3:59118896-59118915 | MS.gene34590:CDS | 35.0% | |
AGAAGGAGAAAAGAAGGAAA+TGG | + | chr4.3:59117170-59117189 | MS.gene34590:intron | 35.0% | |
AGTACCTCAAATTCAACTCT+AGG | + | chr4.3:59118417-59118436 | MS.gene34590:intron | 35.0% | |
AGTATCAAAAGAAACAGAGG+AGG | + | chr4.3:59117246-59117265 | MS.gene34590:CDS | 35.0% | |
ATATACTTATTCTCTCTCGC+AGG | - | chr4.3:59117907-59117926 | None:intergenic | 35.0% | |
ATTAAACTGTTTACCCAAGC+AGG | - | chr4.3:59119080-59119099 | None:intergenic | 35.0% | |
CAAAATCCAAATCCACTTGA+AGG | + | chr4.3:59119503-59119522 | MS.gene34590:CDS | 35.0% | |
CACTAAGTTTGCCTCTATTA+AGG | - | chr4.3:59119781-59119800 | None:intergenic | 35.0% | |
CAGTACTTTATTGAAGGAAG+AGG | + | chr4.3:59118924-59118943 | MS.gene34590:CDS | 35.0% | |
CTCAAACAGTCAAAGAAAGT+GGG | + | chr4.3:59118897-59118916 | MS.gene34590:CDS | 35.0% | |
CTTAATAGAGGCAAACTTAG+TGG | + | chr4.3:59119779-59119798 | MS.gene34590:CDS | 35.0% | |
GAACTTTGTCTATCCCAATT+AGG | - | chr4.3:59119905-59119924 | None:intergenic | 35.0% | |
GAAGGAAATGGATATTTGGA+AGG | + | chr4.3:59117182-59117201 | MS.gene34590:CDS | 35.0% | |
GAAGTAAAGTGAATGGAAGA+TGG | + | chr4.3:59119339-59119358 | MS.gene34590:CDS | 35.0% | |
GAATCGAACATGAAACCTTA+AGG | - | chr4.3:59117594-59117613 | None:intergenic | 35.0% | |
GACAATGCATAATGTATGCA+AGG | - | chr4.3:59118312-59118331 | None:intergenic | 35.0% | |
GGATAGCTTATGAAAACAAC+CGG | - | chr4.3:59119203-59119222 | None:intergenic | 35.0% | |
GGATGACAGTACTTTATTGA+AGG | + | chr4.3:59118918-59118937 | MS.gene34590:CDS | 35.0% | |
GTACCTCAAATTCAACTCTA+GGG | + | chr4.3:59118418-59118437 | MS.gene34590:intron | 35.0% | |
TATTGCTGTGATTTAGTCAG+GGG | - | chr4.3:59117829-59117848 | None:intergenic | 35.0% | |
TCAACCTATCAAAATCCAGA+GGG | + | chr4.3:59117363-59117382 | MS.gene34590:CDS | 35.0% | |
TGTTATAAACCCACTTAGGT+TGG | + | chr4.3:59117530-59117549 | MS.gene34590:intron | 35.0% | |
! | AAACCAGCTCTTCTTTTTCT+TGG | - | chr4.3:59116984-59117003 | None:intergenic | 35.0% |
! | AAAGCATTTGAGAGACTGTT+TGG | - | chr4.3:59119246-59119265 | None:intergenic | 35.0% |
! | ACCTCAAATTGATTCTTTGC+TGG | + | chr4.3:59118264-59118283 | MS.gene34590:intron | 35.0% |
! | AGTGAAGAGGCTTTTTGTAT+GGG | + | chr4.3:59117009-59117028 | MS.gene34590:CDS | 35.0% |
! | CAAGAAATTCTTTTCCTCAC+AGG | + | chr4.3:59119549-59119568 | MS.gene34590:CDS | 35.0% |
! | GAATCAATTTGAGGTACTAC+TGG | - | chr4.3:59118259-59118278 | None:intergenic | 35.0% |
! | GTATTTTCTTGTTCATGGAC+AGG | + | chr4.3:59118542-59118561 | MS.gene34590:intron | 35.0% |
! | GTTTCTTTTGATACTGTTGG+GGG | - | chr4.3:59117241-59117260 | None:intergenic | 35.0% |
! | TAATTCCAAGACCTTGCTTT+TGG | - | chr4.3:59119683-59119702 | None:intergenic | 35.0% |
! | TAGTGAAGAGGCTTTTTGTA+TGG | + | chr4.3:59117008-59117027 | MS.gene34590:CDS | 35.0% |
! | TCTAAAATCGGTGACGAATT+TGG | + | chr4.3:59119446-59119465 | MS.gene34590:CDS | 35.0% |
! | TCTTCAGAGTATTCATAGCT+TGG | - | chr4.3:59118641-59118660 | None:intergenic | 35.0% |
! | TTTTGGCAACGGTATCAAAA+AGG | - | chr4.3:59118155-59118174 | None:intergenic | 35.0% |
!! | CAGAAGCTTGTTAAAAAGTC+AGG | + | chr4.3:59118201-59118220 | MS.gene34590:intron | 35.0% |
!! | GTTGTTTTCATAAGCTATCC+TGG | + | chr4.3:59119203-59119222 | MS.gene34590:intron | 35.0% |
!! | TACAGTTAATGATAGTGGGT+GGG | + | chr4.3:59117682-59117701 | MS.gene34590:intron | 35.0% |
!!! | ACTTTTTCGATTTAAGCTGC+CGG | + | chr4.3:59119181-59119200 | MS.gene34590:intron | 35.0% |
ACAGCTTGAAGAAACTCACA+AGG | - | chr4.3:59117438-59117457 | None:intergenic | 40.0% | |
AGATAGCTCACTGCCTAATT+GGG | + | chr4.3:59119889-59119908 | MS.gene34590:CDS | 40.0% | |
AGCATTTGAGAGACTGTTTG+GGG | - | chr4.3:59119244-59119263 | None:intergenic | 40.0% | |
AGGAGACTTCAAATGGTTGA+AGG | + | chr4.3:59118702-59118721 | MS.gene34590:CDS | 40.0% | |
CAACAAGTTCACCAAAAGCA+AGG | + | chr4.3:59119669-59119688 | MS.gene34590:CDS | 40.0% | |
CAGTGCCTATAAAATCAAGC+AGG | + | chr4.3:59119840-59119859 | MS.gene34590:CDS | 40.0% | |
CATAATGTATGCAAGGTCTG+AGG | - | chr4.3:59118305-59118324 | None:intergenic | 40.0% | |
CTCAACCTATCAAAATCCAG+AGG | + | chr4.3:59117362-59117381 | MS.gene34590:CDS | 40.0% | |
CTCACATTCTACACAAGAGA+AGG | + | chr4.3:59117033-59117052 | MS.gene34590:CDS | 40.0% | |
CTGTTTGGGGGAAAATACTT+CGG | - | chr4.3:59119231-59119250 | None:intergenic | 40.0% | |
CTTCCCTAGAGTTGAATTTG+AGG | - | chr4.3:59118424-59118443 | None:intergenic | 40.0% | |
GTAAAGTGAATGGAAGATGG+AGG | + | chr4.3:59119342-59119361 | MS.gene34590:CDS | 40.0% | |
GTACAATTACGATCCTGCTT+GGG | + | chr4.3:59119064-59119083 | MS.gene34590:intron | 40.0% | |
TACCAACTGAGTTAAGCTCA+CGG | + | chr4.3:59118334-59118353 | MS.gene34590:intron | 40.0% | |
TACGTCCTCAATACCAATTG+AGG | - | chr4.3:59118119-59118138 | None:intergenic | 40.0% | |
TCCAAATCCACTTGAAGGAT+TGG | + | chr4.3:59119508-59119527 | MS.gene34590:CDS | 40.0% | |
TCCAATCAGAGATTTGTGCA+AGG | + | chr4.3:59118682-59118701 | MS.gene34590:CDS | 40.0% | |
TCCTTGCACAAATCTCTGAT+TGG | - | chr4.3:59118686-59118705 | None:intergenic | 40.0% | |
TCGAACATGAAACCTTAAGG+AGG | - | chr4.3:59117591-59117610 | None:intergenic | 40.0% | |
TGATACCGTTGCCAAAATCT+TGG | + | chr4.3:59118158-59118177 | MS.gene34590:intron | 40.0% | |
TGTACAATTACGATCCTGCT+TGG | + | chr4.3:59119063-59119082 | MS.gene34590:intron | 40.0% | |
TTGTGCAAGGAGACTTCAAA+TGG | + | chr4.3:59118695-59118714 | MS.gene34590:CDS | 40.0% | |
TTTCCGAAGACCAACACAAT+AGG | - | chr4.3:59118383-59118402 | None:intergenic | 40.0% | |
! | ATTGATTCTTTGCTGGTGTC+CGG | + | chr4.3:59118271-59118290 | MS.gene34590:intron | 40.0% |
! | CAATTTGAGGTACTACTGGA+TGG | - | chr4.3:59118255-59118274 | None:intergenic | 40.0% |
! | CTCAAATTCAACTCTAGGGA+AGG | + | chr4.3:59118422-59118441 | MS.gene34590:intron | 40.0% |
! | GAAATTCTTTTCCTCACAGG+AGG | + | chr4.3:59119552-59119571 | MS.gene34590:CDS | 40.0% |
! | GCTGGTTTAATCTAGTGAAG+AGG | + | chr4.3:59116996-59117015 | MS.gene34590:CDS | 40.0% |
! | TCCAATCCTTCAAGTGGATT+TGG | - | chr4.3:59119512-59119531 | None:intergenic | 40.0% |
! | TGAGCTTAACTCAGTTGGTA+AGG | - | chr4.3:59118334-59118353 | None:intergenic | 40.0% |
!! | ATCTCCCTCTGGATTTTGAT+AGG | - | chr4.3:59117370-59117389 | None:intergenic | 40.0% |
!! | CCAATCATTTTCAAGCTCTC+CGG | + | chr4.3:59119595-59119614 | MS.gene34590:CDS | 40.0% |
!! | GTACAGTTAATGATAGTGGG+TGG | + | chr4.3:59117681-59117700 | MS.gene34590:intron | 40.0% |
!! | GTTCCTATTGTGTTGGTCTT+CGG | + | chr4.3:59118377-59118396 | MS.gene34590:intron | 40.0% |
ACCAACTGAGTTAAGCTCAC+GGG | + | chr4.3:59118335-59118354 | MS.gene34590:intron | 45.0% | |
ACTCACAAGGTAACCCCTAA+AGG | - | chr4.3:59117425-59117444 | None:intergenic | 45.0% | |
ATTGAACACTTCCTCCTGTG+AGG | - | chr4.3:59119566-59119585 | None:intergenic | 45.0% | |
CAGATAGCTCACTGCCTAAT+TGG | + | chr4.3:59119888-59119907 | MS.gene34590:CDS | 45.0% | |
CCGGAGAGCTTGAAAATGAT+TGG | - | chr4.3:59119598-59119617 | None:intergenic | 45.0% | |
GCATTTGAGAGACTGTTTGG+GGG | - | chr4.3:59119243-59119262 | None:intergenic | 45.0% | |
GGAAAGGGGTCTGATAGTTA+TGG | + | chr4.3:59118052-59118071 | MS.gene34590:intron | 45.0% | |
GGTGAATCCAATCCTTCAAG+TGG | - | chr4.3:59119518-59119537 | None:intergenic | 45.0% | |
GTTCACCAAAAGCAAGGTCT+TGG | + | chr4.3:59119675-59119694 | MS.gene34590:CDS | 45.0% | |
GTTTCATGTTCGATTCCCTC+CGG | + | chr4.3:59117598-59117617 | MS.gene34590:intron | 45.0% | |
TACCGTTGCCAAAATCTTGG+TGG | + | chr4.3:59118161-59118180 | MS.gene34590:intron | 45.0% | |
TACGGCCTCAATTGGTATTG+AGG | + | chr4.3:59118111-59118130 | MS.gene34590:intron | 45.0% | |
TACTTATTCTCTCTCGCAGG+AGG | - | chr4.3:59117904-59117923 | None:intergenic | 45.0% | |
TATTCCCTTCAATGCCCTCA+AGG | - | chr4.3:59118577-59118596 | None:intergenic | 45.0% | |
TCGAGAACATGTGGCTCATA+CGG | + | chr4.3:59118093-59118112 | MS.gene34590:intron | 45.0% | |
TGGCCAAGAAAAAGAAGAGC+TGG | + | chr4.3:59116978-59116997 | MS.gene34590:CDS | 45.0% | |
TGTTCATGGACAGGCAAAGA+AGG | + | chr4.3:59118551-59118570 | MS.gene34590:intron | 45.0% | |
TTGATTCTTTGCTGGTGTCC+GGG | + | chr4.3:59118272-59118291 | MS.gene34590:intron | 45.0% | |
! | AGGTTCTGCCACCAAGATTT+TGG | - | chr4.3:59118172-59118191 | None:intergenic | 45.0% |
! | ATTCCCTCCGGTGTCAATTT+GGG | + | chr4.3:59117610-59117629 | MS.gene34590:intron | 45.0% |
! | GAGGTACTACTGGATGGTAA+AGG | - | chr4.3:59118249-59118268 | None:intergenic | 45.0% |
! | TGAATGGAAGATGGAGGTAC+TGG | + | chr4.3:59119348-59119367 | MS.gene34590:CDS | 45.0% |
!! | ATAAACCCACTTAGGTTGGC+CGG | + | chr4.3:59117534-59117553 | MS.gene34590:intron | 45.0% |
!! | CACAGGAGGAAGTGTTCAAT+AGG | + | chr4.3:59119566-59119585 | MS.gene34590:CDS | 45.0% |
!! | GTGGTATTGGCTTGAGATCT+GGG | + | chr4.3:59117557-59117576 | MS.gene34590:intron | 45.0% |
!! | TGCCACCAAGATTTTGGCAA+CGG | - | chr4.3:59118166-59118185 | None:intergenic | 45.0% |
ACAGGCAAAGAAGGCCTTGA+GGG | + | chr4.3:59118560-59118579 | MS.gene34590:intron | 50.0% | |
CCAACTGAGTTAAGCTCACG+GGG | + | chr4.3:59118336-59118355 | MS.gene34590:intron | 50.0% | |
GATCTCAAGCCAATACCACC+CGG | - | chr4.3:59117556-59117575 | None:intergenic | 50.0% | |
GTTGGGGGAGCTGTAATTGA+AGG | - | chr4.3:59117226-59117245 | None:intergenic | 50.0% | |
TAGCCCACCCAAATTGACAC+CGG | - | chr4.3:59117620-59117639 | None:intergenic | 50.0% | |
TCAGTAGCAGCCATGTATGC+CGG | - | chr4.3:59119626-59119645 | None:intergenic | 50.0% | |
TGACTCTGCTGACCTCTGTA+GGG | - | chr4.3:59119315-59119334 | None:intergenic | 50.0% | |
TGATTCTTTGCTGGTGTCCG+GGG | + | chr4.3:59118273-59118292 | MS.gene34590:intron | 50.0% | |
! | GATTCCCTCCGGTGTCAATT+TGG | + | chr4.3:59117609-59117628 | MS.gene34590:intron | 50.0% |
!! | AAGGCCTTGAGGGCATTGAA+GGG | + | chr4.3:59118570-59118589 | MS.gene34590:CDS | 50.0% |
!! | GGTGGTATTGGCTTGAGATC+TGG | + | chr4.3:59117556-59117575 | MS.gene34590:intron | 50.0% |
!! | TAAACCCACTTAGGTTGGCC+GGG | + | chr4.3:59117535-59117554 | MS.gene34590:intron | 50.0% |
CCACCCAAATTGACACCGGA+GGG | - | chr4.3:59117616-59117635 | None:intergenic | 55.0% | |
CCCCGTGAGCTTAACTCAGT+TGG | - | chr4.3:59118339-59118358 | None:intergenic | 55.0% | |
CTGACTCTGCTGACCTCTGT+AGG | - | chr4.3:59119316-59119335 | None:intergenic | 55.0% | |
GACAGGCAAAGAAGGCCTTG+AGG | + | chr4.3:59118559-59118578 | MS.gene34590:intron | 55.0% | |
GTGGCTCATACGGCCTCAAT+TGG | + | chr4.3:59118103-59118122 | MS.gene34590:intron | 55.0% | |
TTCAAGCTCTCCGGCAACTC+CGG | + | chr4.3:59119604-59119623 | MS.gene34590:CDS | 55.0% | |
! | AAGGTCTGAGGTTCGAACCC+CGG | - | chr4.3:59118293-59118312 | None:intergenic | 55.0% |
! | CCTCCGGTGTCAATTTGGGT+GGG | + | chr4.3:59117614-59117633 | MS.gene34590:intron | 55.0% |
! | TGGGAGTGTGCTCCTCCTTA+AGG | + | chr4.3:59117576-59117595 | MS.gene34590:intron | 55.0% |
!! | GAAGGCCTTGAGGGCATTGA+AGG | + | chr4.3:59118569-59118588 | MS.gene34590:CDS | 55.0% |
!! | GAGGTACTGGCTGGAGCAAT+GGG | + | chr4.3:59119361-59119380 | MS.gene34590:CDS | 55.0% |
!! | GGGGAAAATACTTCGGTGCC+AGG | - | chr4.3:59119224-59119243 | None:intergenic | 55.0% |
!! | TGGAAGATGGAGGTACTGGC+TGG | + | chr4.3:59119352-59119371 | MS.gene34590:CDS | 55.0% |
!! | TTAGGTTGGCCGGGTGGTAT+TGG | + | chr4.3:59117544-59117563 | MS.gene34590:intron | 55.0% |
ACCACCCGGCCAACCTAAGT+GGG | - | chr4.3:59117542-59117561 | None:intergenic | 60.0% | |
CCCACCCAAATTGACACCGG+AGG | - | chr4.3:59117617-59117636 | None:intergenic | 60.0% | |
GCCATGTATGCCGGAGTTGC+CGG | - | chr4.3:59119617-59119636 | None:intergenic | 60.0% | |
TACCACCCGGCCAACCTAAG+TGG | - | chr4.3:59117543-59117562 | None:intergenic | 60.0% | |
TCCGGCAACTCCGGCATACA+TGG | + | chr4.3:59119613-59119632 | MS.gene34590:CDS | 60.0% | |
! | CCCTCCGGTGTCAATTTGGG+TGG | + | chr4.3:59117613-59117632 | MS.gene34590:intron | 60.0% |
!! | GGAGGTACTGGCTGGAGCAA+TGG | + | chr4.3:59119360-59119379 | MS.gene34590:CDS | 60.0% |
!! | ACCCACTTAGGTTGGCCGGG+TGG | + | chr4.3:59117538-59117557 | MS.gene34590:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 59116977 | 59119934 | 59116977 | ID=MS.gene34590 |
chr4.3 | mRNA | 59116977 | 59119934 | 59116977 | ID=MS.gene34590.t1;Parent=MS.gene34590 |
chr4.3 | exon | 59116977 | 59117054 | 59116977 | ID=MS.gene34590.t1.exon1;Parent=MS.gene34590.t1 |
chr4.3 | CDS | 59116977 | 59117054 | 59116977 | ID=cds.MS.gene34590.t1;Parent=MS.gene34590.t1 |
chr4.3 | exon | 59117172 | 59117438 | 59117172 | ID=MS.gene34590.t1.exon2;Parent=MS.gene34590.t1 |
chr4.3 | CDS | 59117172 | 59117438 | 59117172 | ID=cds.MS.gene34590.t1;Parent=MS.gene34590.t1 |
chr4.3 | exon | 59118564 | 59118782 | 59118564 | ID=MS.gene34590.t1.exon3;Parent=MS.gene34590.t1 |
chr4.3 | CDS | 59118564 | 59118782 | 59118564 | ID=cds.MS.gene34590.t1;Parent=MS.gene34590.t1 |
chr4.3 | exon | 59118892 | 59119023 | 59118892 | ID=MS.gene34590.t1.exon4;Parent=MS.gene34590.t1 |
chr4.3 | CDS | 59118892 | 59119023 | 59118892 | ID=cds.MS.gene34590.t1;Parent=MS.gene34590.t1 |
chr4.3 | exon | 59119320 | 59119934 | 59119320 | ID=MS.gene34590.t1.exon5;Parent=MS.gene34590.t1 |
chr4.3 | CDS | 59119320 | 59119934 | 59119320 | ID=cds.MS.gene34590.t1;Parent=MS.gene34590.t1 |
Gene Sequence |
Protein sequence |