Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34608.t1 | XP_013443637.1 | 98.1 | 415 | 7 | 1 | 1 | 414 | 1 | 415 | 4.60E-221 | 776.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34608.t1 | Q8VXY7 | 66.8 | 419 | 133 | 3 | 2 | 414 | 32 | 450 | 3.9e-152 | 539.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34608.t1 | A0A072TJQ1 | 98.1 | 415 | 7 | 1 | 1 | 414 | 1 | 415 | 3.3e-221 | 776.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34608 | MS.gene62397 | PPI |
| MS.gene59944 | MS.gene34608 | PPI |
| MS.gene59641 | MS.gene34608 | PPI |
| MS.gene34608 | MS.gene036759 | PPI |
| MS.gene036758 | MS.gene34608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34608.t1 | MTR_0003s0470 | 98.795 | 415 | 4 | 1 | 1 | 414 | 1 | 415 | 0.0 | 818 |
| MS.gene34608.t1 | MTR_3g462280 | 81.553 | 412 | 73 | 2 | 6 | 414 | 12 | 423 | 0.0 | 663 |
| MS.gene34608.t1 | MTR_4g114710 | 48.649 | 407 | 191 | 5 | 12 | 414 | 6 | 398 | 1.94e-120 | 355 |
| MS.gene34608.t1 | MTR_0008s0170 | 32.452 | 416 | 255 | 8 | 18 | 414 | 2 | 410 | 4.28e-60 | 201 |
| MS.gene34608.t1 | MTR_2g011600 | 33.102 | 432 | 250 | 12 | 8 | 414 | 2 | 419 | 1.07e-59 | 200 |
| MS.gene34608.t1 | MTR_0008s0130 | 33.577 | 411 | 241 | 13 | 25 | 414 | 11 | 410 | 2.07e-56 | 191 |
| MS.gene34608.t1 | MTR_2g011580 | 32.987 | 385 | 230 | 8 | 50 | 414 | 2 | 378 | 1.35e-51 | 177 |
| MS.gene34608.t1 | MTR_4g050990 | 33.577 | 411 | 241 | 11 | 25 | 414 | 11 | 410 | 6.14e-51 | 177 |
| MS.gene34608.t1 | MTR_2g089520 | 33.577 | 411 | 241 | 11 | 25 | 414 | 11 | 410 | 6.14e-51 | 177 |
| MS.gene34608.t1 | MTR_2g047968 | 34.204 | 421 | 234 | 13 | 22 | 414 | 5 | 410 | 1.39e-49 | 174 |
| MS.gene34608.t1 | MTR_2g011600 | 32.982 | 379 | 216 | 11 | 62 | 414 | 2 | 368 | 5.81e-47 | 165 |
| MS.gene34608.t1 | MTR_1g071120 | 32.132 | 333 | 198 | 9 | 26 | 340 | 53 | 375 | 1.44e-41 | 152 |
| MS.gene34608.t1 | MTR_8g007285 | 29.348 | 368 | 233 | 8 | 67 | 414 | 2 | 362 | 3.21e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34608.t1 | AT1G70330 | 66.826 | 419 | 133 | 3 | 2 | 414 | 32 | 450 | 0.0 | 550 |
| MS.gene34608.t1 | AT1G02630 | 49.231 | 390 | 184 | 4 | 25 | 414 | 14 | 389 | 2.44e-129 | 378 |
| MS.gene34608.t1 | AT1G02630 | 42.821 | 390 | 165 | 5 | 25 | 414 | 14 | 345 | 7.16e-100 | 301 |
| MS.gene34608.t1 | AT4G05120 | 33.902 | 410 | 240 | 11 | 25 | 414 | 14 | 412 | 3.50e-54 | 186 |
| MS.gene34608.t1 | AT4G05120 | 33.902 | 410 | 240 | 11 | 25 | 414 | 14 | 412 | 3.50e-54 | 186 |
| MS.gene34608.t1 | AT4G05110 | 33.659 | 410 | 241 | 11 | 25 | 414 | 14 | 412 | 5.99e-54 | 185 |
| MS.gene34608.t1 | AT4G05110 | 33.659 | 410 | 241 | 11 | 25 | 414 | 14 | 412 | 5.99e-54 | 185 |
| MS.gene34608.t1 | AT4G05110 | 33.659 | 410 | 241 | 11 | 25 | 414 | 14 | 412 | 1.23e-53 | 185 |
| MS.gene34608.t1 | AT4G05130 | 32.039 | 412 | 245 | 12 | 25 | 414 | 14 | 412 | 1.67e-49 | 173 |
| MS.gene34608.t1 | AT3G09990 | 31.068 | 412 | 255 | 9 | 23 | 414 | 11 | 413 | 3.23e-48 | 170 |
| MS.gene34608.t1 | AT1G61630 | 30.147 | 408 | 253 | 7 | 29 | 414 | 15 | 412 | 1.01e-47 | 168 |
| MS.gene34608.t1 | AT4G05140 | 31.190 | 420 | 250 | 12 | 21 | 414 | 7 | 413 | 7.03e-47 | 166 |
Find 80 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTATTATTGCTTGGTTT+TGG | 0.145627 | 4.3:-59862614 | MS.gene34608:CDS |
| ATCTCTGTCCGGAAGAATTT+TGG | 0.169442 | 4.3:+59862789 | None:intergenic |
| GTTGGTGCTGTTGGACTTTC+CGG | 0.196933 | 4.3:-59864932 | MS.gene34608:CDS |
| TACATGCTCGTTGGTCTCTT+TGG | 0.274505 | 4.3:-59865112 | MS.gene34608:CDS |
| CTCGGCATGCTGTAACTTTA+CGG | 0.281643 | 4.3:+59862686 | None:intergenic |
| ATGCGATCCACGCTTGCTTC+AGG | 0.288914 | 4.3:+59865148 | None:intergenic |
| AATAGGTTATGTATGCTAAA+TGG | 0.326421 | 4.3:+59865245 | None:intergenic |
| ACCTATTTCATCCTCGGTTT+CGG | 0.330159 | 4.3:-59865229 | MS.gene34608:CDS |
| CTTCTACCATCATCATCTTC+AGG | 0.343945 | 4.3:-59865298 | MS.gene34608:CDS |
| CACAATACTGACTTGTCTCT+TGG | 0.344547 | 4.3:-59862760 | MS.gene34608:CDS |
| TGTCCACTCTCAACTTCTTA+AGG | 0.353007 | 4.3:-59862970 | MS.gene34608:CDS |
| CAGCGACTGCCTGAATCTTT+AGG | 0.353281 | 4.3:+59863138 | None:intergenic |
| AAACATTAAAGCAAGTAATA+AGG | 0.355362 | 4.3:+59862931 | None:intergenic |
| ACAATACTGACTTGTCTCTT+GGG | 0.363279 | 4.3:-59862759 | MS.gene34608:CDS |
| ATAAATCTCATGCTTATGTT+AGG | 0.364457 | 4.3:-59865063 | MS.gene34608:CDS |
| GTCATCGTAGTACTTCATAA+TGG | 0.365964 | 4.3:+59863160 | None:intergenic |
| GTCCTTTGACTGGATCTGTT+TGG | 0.367452 | 4.3:-59863100 | MS.gene34608:CDS |
| TATGTTGCTGTTGGTGCTGT+TGG | 0.372892 | 4.3:-59864941 | MS.gene34608:CDS |
| GGTTCTATTGTTGGATCTGC+TGG | 0.374532 | 4.3:-59864887 | MS.gene34608:CDS |
| CTTCTGGTTCTATTATTGCT+TGG | 0.384734 | 4.3:-59862620 | MS.gene34608:CDS |
| CTACGATGACCTAAAGATTC+AGG | 0.386093 | 4.3:-59863147 | MS.gene34608:CDS |
| GTGACACTCGCAATATTTCC+AGG | 0.397334 | 4.3:-59863008 | MS.gene34608:CDS |
| TGCTTATGTTAGGATTAACT+TGG | 0.399833 | 4.3:-59865053 | MS.gene34608:CDS |
| ACCGAAACCGAGGATGAAAT+AGG | 0.411794 | 4.3:+59865228 | None:intergenic |
| ATTGCTGGCACTGCTGCTTC+TGG | 0.415429 | 4.3:-59864833 | MS.gene34608:intron |
| GTTTCGGTTATTTACTTCCA+TGG | 0.415754 | 4.3:-59865213 | MS.gene34608:CDS |
| TATATGCAAGCTGTCATTGC+TGG | 0.420137 | 4.3:-59864848 | MS.gene34608:CDS |
| TTGGTGCAGGGTTCTATTGT+TGG | 0.427009 | 4.3:-59864896 | MS.gene34608:CDS |
| TGTCTCTTGGGGCTTACAAA+TGG | 0.431350 | 4.3:-59862747 | MS.gene34608:CDS |
| AAGCAAGTAATAAGGAGAAC+TGG | 0.433685 | 4.3:+59862939 | None:intergenic |
| TACACGGTCCAAAATTCTTC+CGG | 0.434751 | 4.3:-59862797 | MS.gene34608:CDS |
| TGCGATCCACGCTTGCTTCA+GGG | 0.438336 | 4.3:+59865149 | None:intergenic |
| TGTTGCTGATGCATTGGTGC+AGG | 0.441747 | 4.3:-59864909 | MS.gene34608:CDS |
| TCATCGTAGTACTTCATAAT+GGG | 0.441941 | 4.3:+59863161 | None:intergenic |
| GAGTGCAAATCTCTACTTTG+CGG | 0.451493 | 4.3:-59863240 | MS.gene34608:CDS |
| TTACAGCATGCCGAGACTGC+TGG | 0.461987 | 4.3:-59862678 | MS.gene34608:CDS |
| TACATAACCTATTTCATCCT+CGG | 0.462014 | 4.3:-59865235 | MS.gene34608:CDS |
| TTCCGGTGTTGCTGATGCAT+TGG | 0.464340 | 4.3:-59864915 | MS.gene34608:CDS |
| ACTCTCAACTTCTTAAGGAT+TGG | 0.473670 | 4.3:-59862965 | MS.gene34608:CDS |
| TGGTAGAAGAAGAGTTGAAT+CGG | 0.495312 | 4.3:+59865312 | None:intergenic |
| GTTGGAACAATTAAGTGGTA+TGG | 0.499056 | 4.3:-59863056 | MS.gene34608:CDS |
| AAGAAGAGTTGAATCGGAAT+CGG | 0.503135 | 4.3:+59865318 | None:intergenic |
| TACAGCATGCCGAGACTGCT+GGG | 0.509187 | 4.3:-59862677 | MS.gene34608:CDS |
| GCTGTTGTTTACATGCTCGT+TGG | 0.512487 | 4.3:-59865121 | MS.gene34608:CDS |
| TTTATGTTAAGGGTCGGGTC+GGG | 0.513730 | 4.3:-59864979 | MS.gene34608:CDS |
| GATGACAACAGTCCTTTGAC+TGG | 0.525418 | 4.3:-59863110 | MS.gene34608:CDS |
| GCTAAATGGTATTTGTCTTG+TGG | 0.527798 | 4.3:+59865259 | None:intergenic |
| ACAGCTTGCATATACCTCTC+AGG | 0.532551 | 4.3:+59864857 | None:intergenic |
| TGTGATTATGTTCCTATGCA+TGG | 0.534710 | 4.3:-59863210 | MS.gene34608:CDS |
| AAATCATCAATACACTGGTA+AGG | 0.536010 | 4.3:+59862721 | None:intergenic |
| CAATACTGACTTGTCTCTTG+GGG | 0.545865 | 4.3:-59862758 | MS.gene34608:CDS |
| CACCAATGCATCAGCAACAC+CGG | 0.559726 | 4.3:+59864913 | None:intergenic |
| CAAGAAGGTATACTGCAGTA+AGG | 0.559942 | 4.3:+59862889 | None:intergenic |
| AGACAAGTCAGTATTGTGAC+AGG | 0.564239 | 4.3:+59862765 | None:intergenic |
| ACATCCTCTGTAATGTAACC+TGG | 0.566880 | 4.3:+59862990 | None:intergenic |
| GTTGTTCCTGAAGATGATGA+TGG | 0.569144 | 4.3:+59865292 | None:intergenic |
| CTCTTCTTAGGATGCCTACA+CGG | 0.571460 | 4.3:-59862813 | MS.gene34608:CDS |
| TTGTGACAGGAATCTCTGTC+CGG | 0.573239 | 4.3:+59862778 | None:intergenic |
| GCTTATGTTAGGATTAACTT+GGG | 0.574619 | 4.3:-59865052 | MS.gene34608:CDS |
| GTTGCTGATGCATTGGTGCA+GGG | 0.577108 | 4.3:-59864908 | MS.gene34608:CDS |
| TCTTTACCCTGAAGCAAGCG+TGG | 0.578956 | 4.3:-59865155 | MS.gene34608:CDS |
| ATACCACTTAATTGTTCCAA+CGG | 0.579389 | 4.3:+59863058 | None:intergenic |
| GTTTACACACAAGATGTCTC+CGG | 0.581564 | 4.3:-59863272 | MS.gene34608:CDS |
| CTGCTGGTGAGTTGCCTGAG+AGG | 0.582234 | 4.3:-59864871 | MS.gene34608:CDS |
| ACTCACAATCCCAGCAGTCT+CGG | 0.585402 | 4.3:+59862668 | None:intergenic |
| AGCTAAAATCATCAATACAC+TGG | 0.598738 | 4.3:+59862716 | None:intergenic |
| GCTGTGATGAATGCGTTCCA+TGG | 0.604002 | 4.3:+59865196 | None:intergenic |
| CTCCAAACAGATCCAGTCAA+AGG | 0.607721 | 4.3:+59863098 | None:intergenic |
| CATTGTACAAAACCATGCAT+AGG | 0.607766 | 4.3:+59863198 | None:intergenic |
| ATACCGTTGGAACAATTAAG+TGG | 0.609266 | 4.3:-59863061 | MS.gene34608:CDS |
| TCAACTGTGTGGGATACCGT+TGG | 0.617097 | 4.3:-59863074 | MS.gene34608:CDS |
| TGTAGGCATCCTAAGAAGAG+AGG | 0.621915 | 4.3:+59862816 | None:intergenic |
| AAGATAAGAGAAGTAATCAA+CGG | 0.623151 | 4.3:+59865174 | None:intergenic |
| ATTTCCAGGTTACATTACAG+AGG | 0.630377 | 4.3:-59862994 | MS.gene34608:CDS |
| GTAGGCATCCTAAGAAGAGA+GGG | 0.638243 | 4.3:+59862817 | None:intergenic |
| AAAGATTCAGGCAGTCGCTG+TGG | 0.644804 | 4.3:-59863135 | MS.gene34608:CDS |
| AATCCTTAAGAAGTTGAGAG+TGG | 0.645129 | 4.3:+59862967 | None:intergenic |
| GAAGTAAATAACCGAAACCG+AGG | 0.675912 | 4.3:+59865218 | None:intergenic |
| CTGTTTGGAGATCAACTGTG+TGG | 0.688119 | 4.3:-59863085 | MS.gene34608:CDS |
| TGTTTGGAGATCAACTGTGT+GGG | 0.723698 | 4.3:-59863084 | MS.gene34608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTAAAATTATTATA+CGG | - | chr4.3:59863916-59863935 | MS.gene34608:intron | 0.0% |
| !! | AAAAAAAAAATAAAGTTCCT+AGG | + | chr4.3:59864159-59864178 | None:intergenic | 15.0% |
| !!! | ACATTTCTTTTATTGTTATA+AGG | - | chr4.3:59864300-59864319 | MS.gene34608:intron | 15.0% |
| !!! | ATTGATGTTTTTTATGTTAA+GGG | - | chr4.3:59862944-59862963 | MS.gene34608:CDS | 15.0% |
| !! | AAACATTAAAGCAAGTAATA+AGG | + | chr4.3:59865005-59865024 | None:intergenic | 20.0% |
| !! | AAGATAGATGAAATTAGTTA+AGG | - | chr4.3:59863485-59863504 | MS.gene34608:intron | 20.0% |
| !! | ACATAAAAAACATCAATCAA+AGG | + | chr4.3:59862941-59862960 | None:intergenic | 20.0% |
| !! | ATGTGATTATATTCAATAAC+TGG | - | chr4.3:59863886-59863905 | MS.gene34608:intron | 20.0% |
| !! | CAAAATAGTAACAAAGTTAT+GGG | + | chr4.3:59863139-59863158 | None:intergenic | 20.0% |
| !! | TAACAATAAAAGAAATGTGT+AGG | + | chr4.3:59864298-59864317 | None:intergenic | 20.0% |
| !! | TCAAAATAGTAACAAAGTTA+TGG | + | chr4.3:59863140-59863159 | None:intergenic | 20.0% |
| !! | TCCAAAGTTCAATAAAAAAA+AGG | + | chr4.3:59864556-59864575 | None:intergenic | 20.0% |
| !! | TTGATATCATTATAGATTGA+AGG | - | chr4.3:59863824-59863843 | MS.gene34608:intron | 20.0% |
| !!! | CAAATATCTGATTTTATTCT+AGG | + | chr4.3:59864125-59864144 | None:intergenic | 20.0% |
| !!! | GATTGATGTTTTTTATGTTA+AGG | - | chr4.3:59862943-59862962 | MS.gene34608:CDS | 20.0% |
| !!! | TCATTTTCTCAAATTATCAT+CGG | + | chr4.3:59863226-59863245 | None:intergenic | 20.0% |
| !!! | TCCTTTTTTTTATTGAACTT+TGG | - | chr4.3:59864552-59864571 | MS.gene34608:intron | 20.0% |
| !!! | TTTTTTATTGAACTTTGGAA+AGG | - | chr4.3:59864557-59864576 | MS.gene34608:intron | 20.0% |
| ! | AAAAAAAACAAAATGGGTGT+CGG | + | chr4.3:59863731-59863750 | None:intergenic | 25.0% |
| ! | AAAATAGTAACAAAGTTGAG+GGG | + | chr4.3:59863597-59863616 | None:intergenic | 25.0% |
| ! | AAACAAAACATGATATCAGA+TGG | + | chr4.3:59864441-59864460 | None:intergenic | 25.0% |
| ! | AAGATAAGAGAAGTAATCAA+CGG | + | chr4.3:59862762-59862781 | None:intergenic | 25.0% |
| ! | AATAGGTTATGTATGCTAAA+TGG | + | chr4.3:59862691-59862710 | None:intergenic | 25.0% |
| ! | AATCTTGAGTAACTTGATTT+AGG | - | chr4.3:59864483-59864502 | MS.gene34608:intron | 25.0% |
| ! | ACTTTGTAGTTAGTATTACT+TGG | - | chr4.3:59864252-59864271 | MS.gene34608:intron | 25.0% |
| ! | ATAAATCTCATGCTTATGTT+AGG | - | chr4.3:59862870-59862889 | MS.gene34608:CDS | 25.0% |
| ! | ATCATATATGATGTGAGAAT+GGG | - | chr4.3:59863441-59863460 | MS.gene34608:intron | 25.0% |
| ! | CAAAATAGTAACAAAGTTGA+GGG | + | chr4.3:59863598-59863617 | None:intergenic | 25.0% |
| ! | CATATATATGATGTGAGAAT+GGG | - | chr4.3:59863999-59864018 | MS.gene34608:intron | 25.0% |
| ! | CTAATATATAGACAATGTTG+TGG | + | chr4.3:59863368-59863387 | None:intergenic | 25.0% |
| ! | CTTTGTAGTTAGTATTACTT+GGG | - | chr4.3:59864253-59864272 | MS.gene34608:intron | 25.0% |
| ! | GAATAAAATGAATGCCTAAT+TGG | + | chr4.3:59864034-59864053 | None:intergenic | 25.0% |
| ! | TCAAAATAGTAACAAAGTTG+AGG | + | chr4.3:59863599-59863618 | None:intergenic | 25.0% |
| ! | TCATATATATGATGTGAGAA+TGG | - | chr4.3:59863998-59864017 | MS.gene34608:intron | 25.0% |
| ! | TGAAATTAGTTAAGGTAGTT+AGG | - | chr4.3:59863493-59863512 | MS.gene34608:intron | 25.0% |
| ! | TGAATGGAAAATAATGTGTA+AGG | - | chr4.3:59864508-59864527 | MS.gene34608:intron | 25.0% |
| !! | ACATTTTTATTGTGTACCTT+TGG | - | chr4.3:59864190-59864209 | MS.gene34608:intron | 25.0% |
| !! | TAACTTGATTTAGGTTTGAA+TGG | - | chr4.3:59864492-59864511 | MS.gene34608:intron | 25.0% |
| !!! | AGTGTGTTATTCTTAGTTTT+CGG | - | chr4.3:59865285-59865304 | MS.gene34608:CDS | 25.0% |
| !!! | ATCTGATTTTATTCTAGGAA+AGG | + | chr4.3:59864120-59864139 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATGTTAAGGGT+CGG | - | chr4.3:59862948-59862967 | MS.gene34608:CDS | 25.0% |
| !!! | TTCTATTATTGCTTGGTTTT+GGG | - | chr4.3:59865320-59865339 | MS.gene34608:CDS | 25.0% |
| !!! | TTTAATGTTTTTGACCTAGT+CGG | - | chr4.3:59865015-59865034 | MS.gene34608:CDS | 25.0% |
| AAATCATCAATACACTGGTA+AGG | + | chr4.3:59865215-59865234 | None:intergenic | 30.0% | |
| AATGCTTAAGAAGTTTCCAA+AGG | + | chr4.3:59864209-59864228 | None:intergenic | 30.0% | |
| AGCTAAAATCATCAATACAC+TGG | + | chr4.3:59865220-59865239 | None:intergenic | 30.0% | |
| ATACCACTTAATTGTTCCAA+CGG | + | chr4.3:59864878-59864897 | None:intergenic | 30.0% | |
| CTATCTAGTTAGTGTAATTG+AGG | - | chr4.3:59863553-59863572 | MS.gene34608:intron | 30.0% | |
| GAACAATCATGTAGACAAAA+TGG | - | chr4.3:59864333-59864352 | MS.gene34608:intron | 30.0% | |
| GAGAATGCAAAAATTGCTAT+TGG | - | chr4.3:59865066-59865085 | MS.gene34608:CDS | 30.0% | |
| GATCATATATGATGTGAGAA+TGG | - | chr4.3:59863440-59863459 | MS.gene34608:intron | 30.0% | |
| GCTTATGTTAGGATTAACTT+GGG | - | chr4.3:59862881-59862900 | MS.gene34608:CDS | 30.0% | |
| TACATAACCTATTTCATCCT+CGG | - | chr4.3:59862698-59862717 | MS.gene34608:CDS | 30.0% | |
| TATTTGCAGCTTATATTCCT+AGG | - | chr4.3:59864139-59864158 | MS.gene34608:intron | 30.0% | |
| TCATCGTAGTACTTCATAAT+GGG | + | chr4.3:59864775-59864794 | None:intergenic | 30.0% | |
| TGCTTATGTTAGGATTAACT+TGG | - | chr4.3:59862880-59862899 | MS.gene34608:CDS | 30.0% | |
| TTAGTTAAGGTAGTTAGGAT+TGG | - | chr4.3:59863498-59863517 | MS.gene34608:intron | 30.0% | |
| ! | CAATTTTTGCATTCTCAAGA+AGG | + | chr4.3:59865062-59865081 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATTCTC+AGG | + | chr4.3:59864642-59864661 | None:intergenic | 30.0% |
| ! | GTTCTATTATTGCTTGGTTT+TGG | - | chr4.3:59865319-59865338 | MS.gene34608:CDS | 30.0% |
| ! | TTAAGCATTTTTGTGCATCT+CGG | - | chr4.3:59864220-59864239 | MS.gene34608:intron | 30.0% |
| ! | TTGAACTTTGGAAAGGTAAA+TGG | - | chr4.3:59864564-59864583 | MS.gene34608:intron | 30.0% |
| !!! | TATGCATGTTTTTGACTTCA+GGG | - | chr4.3:59864602-59864621 | MS.gene34608:intron | 30.0% |
| !!! | TGTTTTTTATGTTAAGGGTC+GGG | - | chr4.3:59862949-59862968 | MS.gene34608:CDS | 30.0% |
| !!! | TTATGCATGTTTTTGACTTC+AGG | - | chr4.3:59864601-59864620 | MS.gene34608:intron | 30.0% |
| !!! | TTTGTCTTGTGGTGTTTTTT+TGG | + | chr4.3:59862666-59862685 | None:intergenic | 30.0% |
| AAGAAGAGTTGAATCGGAAT+CGG | + | chr4.3:59862618-59862637 | None:intergenic | 35.0% | |
| AAGCAAGTAATAAGGAGAAC+TGG | + | chr4.3:59864997-59865016 | None:intergenic | 35.0% | |
| AATCCTTAAGAAGTTGAGAG+TGG | + | chr4.3:59864969-59864988 | None:intergenic | 35.0% | |
| ACAAACACAAATACTACCAC+CGG | + | chr4.3:59863412-59863431 | None:intergenic | 35.0% | |
| ACTCTCAACTTCTTAAGGAT+TGG | - | chr4.3:59864968-59864987 | MS.gene34608:CDS | 35.0% | |
| ATACCGTTGGAACAATTAAG+TGG | - | chr4.3:59864872-59864891 | MS.gene34608:CDS | 35.0% | |
| ATGAAGCACAAACATAGACA+CGG | - | chr4.3:59863178-59863197 | MS.gene34608:CDS | 35.0% | |
| ATTTCCAGGTTACATTACAG+AGG | - | chr4.3:59864939-59864958 | MS.gene34608:CDS | 35.0% | |
| CATTGTACAAAACCATGCAT+AGG | + | chr4.3:59864738-59864757 | None:intergenic | 35.0% | |
| GCTAAATGGTATTTGTCTTG+TGG | + | chr4.3:59862677-59862696 | None:intergenic | 35.0% | |
| GGAGTGTGTGTTAAAATAGT+TGG | - | chr4.3:59863462-59863481 | MS.gene34608:intron | 35.0% | |
| GTATAGTGTCTGACATATGT+CGG | - | chr4.3:59863850-59863869 | MS.gene34608:intron | 35.0% | |
| GTCATCGTAGTACTTCATAA+TGG | + | chr4.3:59864776-59864795 | None:intergenic | 35.0% | |
| GTTGGAACAATTAAGTGGTA+TGG | - | chr4.3:59864877-59864896 | MS.gene34608:CDS | 35.0% | |
| GTTTCGGTTATTTACTTCCA+TGG | - | chr4.3:59862720-59862739 | MS.gene34608:CDS | 35.0% | |
| TGGTAGAAGAAGAGTTGAAT+CGG | + | chr4.3:59862624-59862643 | None:intergenic | 35.0% | |
| TGTGATTATGTTCCTATGCA+TGG | - | chr4.3:59864723-59864742 | MS.gene34608:intron | 35.0% | |
| TGTGATTGCATTCAAAGTGT+CGG | + | chr4.3:59863686-59863705 | None:intergenic | 35.0% | |
| TTAGTATTACTTGGGCATCT+CGG | - | chr4.3:59864261-59864280 | MS.gene34608:intron | 35.0% | |
| TTGAATGCAATCACATGTGT+CGG | - | chr4.3:59863691-59863710 | MS.gene34608:intron | 35.0% | |
| ! | TAAGCATTTTTGTGCATCTC+GGG | - | chr4.3:59864221-59864240 | MS.gene34608:intron | 35.0% |
| ! | TGCTGTAACTTTACGGTTTT+AGG | + | chr4.3:59865243-59865262 | None:intergenic | 35.0% |
| !! | ACAATACTGACTTGTCTCTT+GGG | - | chr4.3:59865174-59865193 | MS.gene34608:CDS | 35.0% |
| !! | CTTCTGGTTCTATTATTGCT+TGG | - | chr4.3:59865313-59865332 | MS.gene34608:CDS | 35.0% |
| !! | GTTATTCTTAGTTTTCGGTC+TGG | - | chr4.3:59865290-59865309 | MS.gene34608:CDS | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr4.3:59865108-59865127 | MS.gene34608:CDS | 35.0% |
| !!! | ATGCATGTTTTTGACTTCAG+GGG | - | chr4.3:59864603-59864622 | MS.gene34608:intron | 35.0% |
| ACATCCTCTGTAATGTAACC+TGG | + | chr4.3:59864946-59864965 | None:intergenic | 40.0% | |
| ACCTATTTCATCCTCGGTTT+CGG | - | chr4.3:59862704-59862723 | MS.gene34608:CDS | 40.0% | |
| AGACAAGTCAGTATTGTGAC+AGG | + | chr4.3:59865171-59865190 | None:intergenic | 40.0% | |
| AGGTTGTGAGGGATTGAATT+GGG | - | chr4.3:59863342-59863361 | MS.gene34608:intron | 40.0% | |
| CTACGATGACCTAAAGATTC+AGG | - | chr4.3:59864786-59864805 | MS.gene34608:intron | 40.0% | |
| CTCAAATTATCATCGGTGAC+AGG | + | chr4.3:59863219-59863238 | None:intergenic | 40.0% | |
| CTTCTACCATCATCATCTTC+AGG | - | chr4.3:59862635-59862654 | MS.gene34608:CDS | 40.0% | |
| GAAGTAAATAACCGAAACCG+AGG | + | chr4.3:59862718-59862737 | None:intergenic | 40.0% | |
| GAGTGCAAATCTCTACTTTG+CGG | - | chr4.3:59864693-59864712 | MS.gene34608:intron | 40.0% | |
| GTTGTTCCTGAAGATGATGA+TGG | + | chr4.3:59862644-59862663 | None:intergenic | 40.0% | |
| GTTTACACACAAGATGTCTC+CGG | - | chr4.3:59864661-59864680 | MS.gene34608:intron | 40.0% | |
| TACACGGTCCAAAATTCTTC+CGG | - | chr4.3:59865136-59865155 | MS.gene34608:CDS | 40.0% | |
| TAGGTTGTGAGGGATTGAAT+TGG | - | chr4.3:59863341-59863360 | MS.gene34608:intron | 40.0% | |
| TAGTATTACTTGGGCATCTC+GGG | - | chr4.3:59864262-59864281 | MS.gene34608:intron | 40.0% | |
| TATACGGGTGTGCATATCAA+TGG | - | chr4.3:59863932-59863951 | MS.gene34608:intron | 40.0% | |
| TATATGCAAGCTGTCATTGC+TGG | - | chr4.3:59863085-59863104 | MS.gene34608:CDS | 40.0% | |
| TCAAATGCCAATGTTGTGTC+CGG | - | chr4.3:59863390-59863409 | MS.gene34608:intron | 40.0% | |
| TGTCAGTGTCGTGTCATATA+CGG | - | chr4.3:59863267-59863286 | MS.gene34608:CDS | 40.0% | |
| TGTCCACTCTCAACTTCTTA+AGG | - | chr4.3:59864963-59864982 | MS.gene34608:CDS | 40.0% | |
| TGTTTGGAGATCAACTGTGT+GGG | - | chr4.3:59864849-59864868 | MS.gene34608:CDS | 40.0% | |
| ! | AGAGATTTGCACTCTTTTGC+AGG | + | chr4.3:59864687-59864706 | None:intergenic | 40.0% |
| ! | ATCTCTGTCCGGAAGAATTT+TGG | + | chr4.3:59865147-59865166 | None:intergenic | 40.0% |
| ! | ATGGGAGTGTGAAACCAATT+AGG | - | chr4.3:59864017-59864036 | MS.gene34608:intron | 40.0% |
| ! | CAAGAAGGTATACTGCAGTA+AGG | + | chr4.3:59865047-59865066 | None:intergenic | 40.0% |
| ! | GTTTTGCATACCGACCAATT+AGG | - | chr4.3:59864409-59864428 | MS.gene34608:intron | 40.0% |
| ! | TTTTATGTTAAGGGTCGGGT+CGG | - | chr4.3:59862953-59862972 | MS.gene34608:CDS | 40.0% |
| !! | CAATACTGACTTGTCTCTTG+GGG | - | chr4.3:59865175-59865194 | MS.gene34608:CDS | 40.0% |
| !! | CACAATACTGACTTGTCTCT+TGG | - | chr4.3:59865173-59865192 | MS.gene34608:CDS | 40.0% |
| ACAGCTTGCATATACCTCTC+AGG | + | chr4.3:59863079-59863098 | None:intergenic | 45.0% | |
| ACCGAAACCGAGGATGAAAT+AGG | + | chr4.3:59862708-59862727 | None:intergenic | 45.0% | |
| ATCAATGGCAATGTTGTGCC+CGG | - | chr4.3:59863947-59863966 | MS.gene34608:intron | 45.0% | |
| ATGGACTCAGCCTAATTGGT+CGG | + | chr4.3:59864422-59864441 | None:intergenic | 45.0% | |
| CTCCAAACAGATCCAGTCAA+AGG | + | chr4.3:59864838-59864857 | None:intergenic | 45.0% | |
| CTCGGCATGCTGTAACTTTA+CGG | + | chr4.3:59865250-59865269 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCCTACA+CGG | - | chr4.3:59865120-59865139 | MS.gene34608:CDS | 45.0% | |
| CTGTGCTTCATAGGTTGTGA+GGG | - | chr4.3:59863331-59863350 | MS.gene34608:intron | 45.0% | |
| CTGTTTGGAGATCAACTGTG+TGG | - | chr4.3:59864848-59864867 | MS.gene34608:CDS | 45.0% | |
| GATGACAACAGTCCTTTGAC+TGG | - | chr4.3:59864823-59864842 | MS.gene34608:intron | 45.0% | |
| GGTCGGTATGCAAAACTACA+AGG | + | chr4.3:59864405-59864424 | None:intergenic | 45.0% | |
| GGTTCTATTGTTGGATCTGC+TGG | - | chr4.3:59863046-59863065 | MS.gene34608:CDS | 45.0% | |
| GTAGGCATCCTAAGAAGAGA+GGG | + | chr4.3:59865119-59865138 | None:intergenic | 45.0% | |
| GTCCTTTGACTGGATCTGTT+TGG | - | chr4.3:59864833-59864852 | MS.gene34608:intron | 45.0% | |
| GTGACACTCGCAATATTTCC+AGG | - | chr4.3:59864925-59864944 | MS.gene34608:CDS | 45.0% | |
| TAGTGTCTGACATATGTCGG+TGG | - | chr4.3:59863853-59863872 | MS.gene34608:intron | 45.0% | |
| TCTGTGCTTCATAGGTTGTG+AGG | - | chr4.3:59863330-59863349 | MS.gene34608:intron | 45.0% | |
| TGTAGGCATCCTAAGAAGAG+AGG | + | chr4.3:59865120-59865139 | None:intergenic | 45.0% | |
| TGTCTCTTGGGGCTTACAAA+TGG | - | chr4.3:59865186-59865205 | MS.gene34608:CDS | 45.0% | |
| TTGGTGCAGGGTTCTATTGT+TGG | - | chr4.3:59863037-59863056 | MS.gene34608:CDS | 45.0% | |
| TTGTGACAGGAATCTCTGTC+CGG | + | chr4.3:59865158-59865177 | None:intergenic | 45.0% | |
| TTTATGTTAAGGGTCGGGTC+GGG | - | chr4.3:59862954-59862973 | MS.gene34608:CDS | 45.0% | |
| ! | ATTTGCACTCTTTTGCAGGC+CGG | + | chr4.3:59864683-59864702 | None:intergenic | 45.0% |
| ! | GCTGTTGTTTACATGCTCGT+TGG | - | chr4.3:59862812-59862831 | MS.gene34608:CDS | 45.0% |
| ! | GGAAGAATTTTGGACCGTGT+AGG | + | chr4.3:59865137-59865156 | None:intergenic | 45.0% |
| ! | TACATGCTCGTTGGTCTCTT+TGG | - | chr4.3:59862821-59862840 | MS.gene34608:CDS | 45.0% |
| ! | TCAGATGGACTCAGCCTAAT+TGG | + | chr4.3:59864426-59864445 | None:intergenic | 45.0% |
| !! | GGTGGGTTTTATGTTGCTGT+TGG | - | chr4.3:59862983-59863002 | MS.gene34608:CDS | 45.0% |
| !! | TATGTTGCTGTTGGTGCTGT+TGG | - | chr4.3:59862992-59863011 | MS.gene34608:CDS | 45.0% |
| !! | TTAGTTTTCGGTCTGGCTTC+TGG | - | chr4.3:59865297-59865316 | MS.gene34608:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAACAAAA+TGG | + | chr4.3:59863738-59863757 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAACAAAAT+GGG | + | chr4.3:59863737-59863756 | None:intergenic | 5.0% |
| !!! | AATTTTTAAAATTATTATAC+GGG | - | chr4.3:59863917-59863936 | MS.gene34608:intron | 5.0% |
| AAAGATTCAGGCAGTCGCTG+TGG | - | chr4.3:59864798-59864817 | MS.gene34608:intron | 50.0% | |
| AATGCCAATGTTGTGTCCGG+TGG | - | chr4.3:59863393-59863412 | MS.gene34608:intron | 50.0% | |
| ACCACACAAACATGACCACC+GGG | + | chr4.3:59863968-59863987 | None:intergenic | 50.0% | |
| ACTACCACCGGACACAACAT+TGG | + | chr4.3:59863400-59863419 | None:intergenic | 50.0% | |
| ACTCACAATCCCAGCAGTCT+CGG | + | chr4.3:59865268-59865287 | None:intergenic | 50.0% | |
| CACCAATGCATCAGCAACAC+CGG | + | chr4.3:59863023-59863042 | None:intergenic | 50.0% | |
| CACCACACAAACATGACCAC+CGG | + | chr4.3:59863969-59863988 | None:intergenic | 50.0% | |
| CAGCGACTGCCTGAATCTTT+AGG | + | chr4.3:59864798-59864817 | None:intergenic | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | + | chr4.3:59863317-59863336 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr4.3:59862740-59862759 | None:intergenic | 50.0% | |
| TCAACTGTGTGGGATACCGT+TGG | - | chr4.3:59864859-59864878 | MS.gene34608:CDS | 50.0% | |
| TCCTCAGATTAGGTGTGTCC+CGG | + | chr4.3:59863307-59863326 | None:intergenic | 50.0% | |
| TCTTTACCCTGAAGCAAGCG+TGG | - | chr4.3:59862778-59862797 | MS.gene34608:CDS | 50.0% | |
| ! | GTTGCTGATGCATTGGTGCA+GGG | - | chr4.3:59863025-59863044 | MS.gene34608:CDS | 50.0% |
| ! | TGTTGCTGATGCATTGGTGC+AGG | - | chr4.3:59863024-59863043 | MS.gene34608:CDS | 50.0% |
| !! | CAGTAAGGCTTTTGCCGACT+AGG | + | chr4.3:59865032-59865051 | None:intergenic | 50.0% |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | - | chr4.3:59863322-59863341 | MS.gene34608:intron | 50.0% |
| !! | GTTGGTGCTGTTGGACTTTC+CGG | - | chr4.3:59863001-59863020 | MS.gene34608:CDS | 50.0% |
| !! | TTCCGGTGTTGCTGATGCAT+TGG | - | chr4.3:59863018-59863037 | MS.gene34608:CDS | 50.0% |
| AATGGCAATGTTGTGCCCGG+TGG | - | chr4.3:59863950-59863969 | MS.gene34608:intron | 55.0% | |
| ACCGGGACACACCTAATCTG+AGG | - | chr4.3:59863303-59863322 | MS.gene34608:CDS | 55.0% | |
| ATGCGATCCACGCTTGCTTC+AGG | + | chr4.3:59862788-59862807 | None:intergenic | 55.0% | |
| TACAGCATGCCGAGACTGCT+GGG | - | chr4.3:59865256-59865275 | MS.gene34608:CDS | 55.0% | |
| TACGGATGCGTGTCTGACAC+CGG | - | chr4.3:59863285-59863304 | MS.gene34608:CDS | 55.0% | |
| TGCGATCCACGCTTGCTTCA+GGG | + | chr4.3:59862787-59862806 | None:intergenic | 55.0% | |
| TTACAGCATGCCGAGACTGC+TGG | - | chr4.3:59865255-59865274 | MS.gene34608:CDS | 55.0% | |
| ! | AAGGGTCGGGTCGGGTTTTA+TGG | - | chr4.3:59862962-59862981 | MS.gene34608:CDS | 55.0% |
| ! | ATTGCTGGCACTGCTGCTTC+TGG | - | chr4.3:59863100-59863119 | MS.gene34608:CDS | 55.0% |
| ! | TCGGTGACAGGTGTCGTGTT+TGG | + | chr4.3:59863207-59863226 | None:intergenic | 55.0% |
| !! | GTCGGGTCGGGTTTTATGGT+GGG | - | chr4.3:59862966-59862985 | MS.gene34608:CDS | 55.0% |
| ACGGATGCGTGTCTGACACC+GGG | - | chr4.3:59863286-59863305 | MS.gene34608:CDS | 60.0% | |
| CTGCTGGTGAGTTGCCTGAG+AGG | - | chr4.3:59863062-59863081 | MS.gene34608:CDS | 60.0% | |
| GCCCGGTGGTCATGTTTGTG+TGG | - | chr4.3:59863964-59863983 | MS.gene34608:intron | 60.0% | |
| !! | GGTCGGGTCGGGTTTTATGG+TGG | - | chr4.3:59862965-59862984 | MS.gene34608:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 59862605 | 59865350 | 59862605 | ID=MS.gene34608 |
| chr4.3 | mRNA | 59862605 | 59865350 | 59862605 | ID=MS.gene34608.t1;Parent=MS.gene34608 |
| chr4.3 | exon | 59864834 | 59865350 | 59864834 | ID=MS.gene34608.t1.exon1;Parent=MS.gene34608.t1 |
| chr4.3 | CDS | 59864834 | 59865350 | 59864834 | ID=cds.MS.gene34608.t1;Parent=MS.gene34608.t1 |
| chr4.3 | exon | 59862605 | 59863332 | 59862605 | ID=MS.gene34608.t1.exon2;Parent=MS.gene34608.t1 |
| chr4.3 | CDS | 59862605 | 59863332 | 59862605 | ID=cds.MS.gene34608.t1;Parent=MS.gene34608.t1 |
| Gene Sequence |
| Protein sequence |
