Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34720.t1 | XP_013445755.1 | 99.2 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.00E+00 | 1187.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34720.t1 | O80605 | 69.9 | 602 | 166 | 5 | 5 | 600 | 2 | 594 | 3.0e-238 | 825.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34720.t1 | J7FDE7 | 99.2 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.0e+00 | 1187.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene34720 | 0.870039 | 1.97E-66 | -1.69E-46 |
| MS.gene050817 | MS.gene34720 | 0.820972 | 5.17E-53 | -1.69E-46 |
| MS.gene050818 | MS.gene34720 | 0.846251 | 2.44E-59 | -1.69E-46 |
| MS.gene050894 | MS.gene34720 | 0.841256 | 5.31E-58 | -1.69E-46 |
| MS.gene053143 | MS.gene34720 | 0.812723 | 3.67E-51 | -1.69E-46 |
| MS.gene054585 | MS.gene34720 | 0.863797 | 1.93E-64 | -1.69E-46 |
| MS.gene058015 | MS.gene34720 | 0.825246 | 5.21E-54 | -1.69E-46 |
| MS.gene058404 | MS.gene34720 | 0.829248 | 5.72E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene34720 | 0.810973 | 8.83E-51 | -1.69E-46 |
| MS.gene060076 | MS.gene34720 | 0.814582 | 1.43E-51 | -1.69E-46 |
| MS.gene060077 | MS.gene34720 | 0.838591 | 2.63E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34720.t1 | MTR_8g468330 | 99.167 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1211 |
| MS.gene34720.t1 | MTR_3g110880 | 44.779 | 565 | 235 | 7 | 40 | 595 | 7 | 503 | 2.44e-149 | 440 |
| MS.gene34720.t1 | MTR_6g033580 | 43.609 | 532 | 212 | 10 | 54 | 565 | 10 | 473 | 8.33e-143 | 424 |
| MS.gene34720.t1 | MTR_1g096910 | 43.007 | 572 | 249 | 13 | 39 | 598 | 19 | 525 | 1.19e-141 | 421 |
| MS.gene34720.t1 | MTR_4g131920 | 43.110 | 508 | 217 | 6 | 61 | 565 | 33 | 471 | 5.09e-135 | 404 |
| MS.gene34720.t1 | MTR_4g131920 | 40.717 | 474 | 209 | 6 | 61 | 531 | 33 | 437 | 8.24e-115 | 350 |
| MS.gene34720.t1 | MTR_5g067470 | 52.991 | 234 | 101 | 3 | 54 | 284 | 28 | 255 | 2.65e-74 | 246 |
| MS.gene34720.t1 | MTR_5g067470 | 50.000 | 206 | 97 | 2 | 360 | 565 | 273 | 472 | 1.71e-56 | 199 |
| MS.gene34720.t1 | MTR_6g043880 | 47.639 | 233 | 115 | 2 | 55 | 285 | 26 | 253 | 3.51e-71 | 238 |
| MS.gene34720.t1 | MTR_6g043880 | 42.683 | 246 | 127 | 5 | 360 | 598 | 270 | 508 | 9.36e-52 | 186 |
| MS.gene34720.t1 | MTR_4g102110 | 29.804 | 255 | 123 | 6 | 69 | 303 | 6 | 224 | 4.43e-25 | 107 |
| MS.gene34720.t1 | MTR_4g102110 | 32.692 | 156 | 80 | 4 | 383 | 517 | 196 | 347 | 3.05e-18 | 87.0 |
| MS.gene34720.t1 | MTR_4g102190 | 42.500 | 120 | 62 | 2 | 111 | 228 | 133 | 247 | 4.20e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34720.t1 | AT2G02860 | 69.657 | 613 | 149 | 7 | 5 | 600 | 2 | 594 | 0.0 | 854 |
| MS.gene34720.t1 | AT2G02860 | 70.306 | 458 | 123 | 4 | 147 | 600 | 16 | 464 | 0.0 | 664 |
| MS.gene34720.t1 | AT1G09960 | 44.700 | 566 | 231 | 10 | 34 | 587 | 5 | 500 | 3.07e-145 | 430 |
| MS.gene34720.t1 | AT1G71890 | 42.935 | 552 | 239 | 12 | 42 | 587 | 16 | 497 | 1.78e-142 | 423 |
| MS.gene34720.t1 | AT1G22710 | 40.840 | 595 | 256 | 11 | 13 | 598 | 5 | 512 | 7.06e-140 | 416 |
| MS.gene34720.t1 | AT5G06170 | 41.856 | 528 | 239 | 6 | 61 | 586 | 30 | 491 | 4.37e-138 | 411 |
| MS.gene34720.t1 | AT1G71880 | 41.373 | 568 | 258 | 7 | 23 | 587 | 3 | 498 | 1.61e-136 | 408 |
| MS.gene34720.t1 | AT1G66570 | 42.533 | 529 | 235 | 7 | 61 | 586 | 29 | 491 | 2.36e-136 | 407 |
| MS.gene34720.t1 | AT2G14670 | 43.289 | 529 | 231 | 7 | 61 | 586 | 30 | 492 | 3.17e-134 | 401 |
| MS.gene34720.t1 | AT5G43610 | 41.316 | 547 | 241 | 8 | 43 | 586 | 23 | 492 | 7.81e-131 | 392 |
| MS.gene34720.t1 | AT1G66570 | 39.446 | 469 | 215 | 7 | 61 | 526 | 29 | 431 | 5.67e-109 | 335 |
| MS.gene34720.t1 | AT1G66570 | 40.265 | 452 | 201 | 7 | 61 | 509 | 29 | 414 | 6.56e-109 | 333 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTTGTGGCCCCATTAC+AGG | 0.181088 | 8.1:+45187780 | MS.gene34720:CDS |
| GATAAATGTACTTCAAAATT+TGG | 0.185829 | 8.1:+45188610 | MS.gene34720:CDS |
| CAAACTTGTAGAACATTTAA+AGG | 0.194823 | 8.1:+45188934 | MS.gene34720:intron |
| GCAGACATTGGATACATATT+AGG | 0.197342 | 8.1:+45188787 | MS.gene34720:CDS |
| ATCAGATTCTGCTCCTTTAT+TGG | 0.203282 | 8.1:+45192393 | MS.gene34720:CDS |
| TTCAACCTTGTGTTGGTATT+TGG | 0.209252 | 8.1:+45188584 | MS.gene34720:CDS |
| TTAACTTGTTGACAAGTTTA+AGG | 0.221760 | 8.1:+45192590 | MS.gene34720:CDS |
| TTATATTTATTCTTGGGTTC+TGG | 0.225572 | 8.1:+45188977 | MS.gene34720:CDS |
| GCTGCTGTTATATTTATTCT+TGG | 0.264086 | 8.1:+45188970 | MS.gene34720:CDS |
| GGTCCATGGGATGCTCTCTT+TGG | 0.288809 | 8.1:+45194809 | MS.gene34720:CDS |
| ACTTCCAAAGTGGTCCCTTT+TGG | 0.289575 | 8.1:-45192890 | None:intergenic |
| CAGAAGACGTCCGTTCATTC+TGG | 0.295645 | 8.1:+45188633 | MS.gene34720:CDS |
| GACTCATTTATAACAGATAA+AGG | 0.302396 | 8.1:-45192451 | None:intergenic |
| AGATCATAATGAAAATTTAA+TGG | 0.305128 | 8.1:+45192546 | MS.gene34720:CDS |
| CCTTTATTGGATGAACAAAA+TGG | 0.305588 | 8.1:+45192406 | MS.gene34720:CDS |
| ATGATTATATCCCTTGGTTC+TGG | 0.309802 | 8.1:+45194788 | MS.gene34720:CDS |
| CTGGTTGTGTTTGTTCTGCT+TGG | 0.314119 | 8.1:+45193303 | MS.gene34720:CDS |
| TCGTTTCTTAGATTCTTATA+AGG | 0.314384 | 8.1:-45187058 | None:intergenic |
| TCTTCATTTATTTGGCTTTG+TGG | 0.317021 | 8.1:+45187768 | MS.gene34720:CDS |
| CAGACATTGGATACATATTA+GGG | 0.317808 | 8.1:+45188788 | MS.gene34720:CDS |
| GAACTTCATCAGCAAAATAT+AGG | 0.324119 | 8.1:-45192339 | None:intergenic |
| CAATATTCCAGCATTTGTTT+TGG | 0.325019 | 8.1:+45194838 | MS.gene34720:CDS |
| GGGGCCAGCTAGAGCACTTT+TGG | 0.330003 | 8.1:+45189139 | MS.gene34720:intron |
| GTCGTCTTTGTTTGCATGGC+TGG | 0.331375 | 8.1:+45193189 | MS.gene34720:CDS |
| GCATTATTCTTCGTCGGTAA+TGG | 0.334541 | 8.1:-45187175 | None:intergenic |
| CTGCTGTTATATTTATTCTT+GGG | 0.335722 | 8.1:+45188971 | MS.gene34720:CDS |
| CTGCTGGTGTTCAGTTTGGT+TGG | 0.338510 | 8.1:+45187233 | MS.gene34720:CDS |
| GGGATACAAAAGAGCATTGC+AGG | 0.341769 | 8.1:+45188809 | MS.gene34720:CDS |
| TATTCTTGGGTTCTGGATGC+TGG | 0.341859 | 8.1:+45188984 | MS.gene34720:CDS |
| TGATGGGTGCAAGATTAGTA+TGG | 0.342077 | 8.1:+45193151 | MS.gene34720:CDS |
| TGCTGGTGTTCAGTTTGGTT+GGG | 0.348774 | 8.1:+45187234 | MS.gene34720:CDS |
| ATGGCAGTGGGCAACATTCT+AGG | 0.352234 | 8.1:+45189552 | MS.gene34720:CDS |
| TATCCCTTGGTTCTGGTCCA+TGG | 0.360221 | 8.1:+45194795 | MS.gene34720:CDS |
| TCTTCTCACACCTTACATTC+AGG | 0.361681 | 8.1:+45187270 | MS.gene34720:CDS |
| GCAGAGTTGACTGCTGATTC+AGG | 0.375792 | 8.1:+45193558 | MS.gene34720:CDS |
| TCTAGCAGTTTCAAGTCATC+AGG | 0.393476 | 8.1:+45194917 | MS.gene34720:CDS |
| CCTACCACAAGGCCTGTAAT+GGG | 0.394686 | 8.1:-45187792 | None:intergenic |
| GGTGTTAGAGAAGGTGCATT+TGG | 0.403690 | 8.1:+45192929 | MS.gene34720:CDS |
| TTTGATACATTGCGTTGATC+AGG | 0.404726 | 8.1:-45189510 | None:intergenic |
| ATATAACAGCAGCCCTTGTT+CGG | 0.409438 | 8.1:-45188960 | None:intergenic |
| CAAGCTCTATTTGTCAAGAA+AGG | 0.411741 | 8.1:-45191401 | None:intergenic |
| ATCCCTTGGTTCTGGTCCAT+GGG | 0.418535 | 8.1:+45194796 | MS.gene34720:CDS |
| ACTTACCTGCACTGTGTTGT+TGG | 0.425888 | 8.1:-45189013 | None:intergenic |
| TTGATGCAGACATTGGGAAT+AGG | 0.426605 | 8.1:+45187735 | MS.gene34720:intron |
| ATGACTTGAAACTGCTAGAA+AGG | 0.429364 | 8.1:-45194913 | None:intergenic |
| AAGGAGCAGAATCTGATAAC+TGG | 0.429671 | 8.1:-45192387 | None:intergenic |
| CTTAGTTGCACCGTTGCTGC+TGG | 0.432630 | 8.1:+45187217 | MS.gene34720:CDS |
| AAACTTGTAGAACATTTAAA+GGG | 0.440376 | 8.1:+45188935 | MS.gene34720:intron |
| TCTTGCAATTGTTGCTCCAC+AGG | 0.442753 | 8.1:+45193696 | MS.gene34720:CDS |
| CGAACCAATGTGTAAGTTGA+TGG | 0.442939 | 8.1:+45193134 | MS.gene34720:CDS |
| ACCTACCACAAGGCCTGTAA+TGG | 0.450617 | 8.1:-45187793 | None:intergenic |
| GTTGCTGCTGGTGTTCAGTT+TGG | 0.450766 | 8.1:+45187229 | MS.gene34720:CDS |
| CTGTCTCCCTGCAGTTGTCA+TGG | 0.451183 | 8.1:+45192810 | MS.gene34720:intron |
| AACTTCATCAGCAAAATATA+GGG | 0.451842 | 8.1:-45192338 | None:intergenic |
| TAATTTAGGTGATATTGATC+GGG | 0.454046 | 8.1:+45188758 | MS.gene34720:intron |
| TTGAAACTGCTAGAAAGGTT+TGG | 0.454502 | 8.1:-45194908 | None:intergenic |
| TATAACAGCAGCCCTTGTTC+GGG | 0.457428 | 8.1:-45188959 | None:intergenic |
| GAAGTAGATCTTTATGATCA+AGG | 0.457898 | 8.1:+45192908 | MS.gene34720:CDS |
| TGAGGCATGTGGCAATCTTA+AGG | 0.459644 | 8.1:+45191427 | MS.gene34720:CDS |
| GCATTCAGTGCTGGTTGTAA+TGG | 0.460583 | 8.1:+45192630 | MS.gene34720:CDS |
| ACCTGCTATGCATTCAGTGC+TGG | 0.463939 | 8.1:+45192621 | MS.gene34720:CDS |
| GTAATTTAGGTGATATTGAT+CGG | 0.464209 | 8.1:+45188757 | MS.gene34720:intron |
| TGGTTGTAATGGCTCTCACT+TGG | 0.466348 | 8.1:+45192641 | MS.gene34720:CDS |
| CCATGGGATGCTCTCTTTGG+TGG | 0.467830 | 8.1:+45194812 | MS.gene34720:CDS |
| CGAGGGATAGAACATGCAAT+TGG | 0.469372 | 8.1:+45193252 | MS.gene34720:CDS |
| GTTTATCATGGGGATCCAAA+AGG | 0.474324 | 8.1:+45192875 | MS.gene34720:CDS |
| AACTCTGCTGTAACAGCAAA+GGG | 0.474853 | 8.1:-45193543 | None:intergenic |
| ATTTAGATGATTATATCCCT+TGG | 0.481464 | 8.1:+45194782 | MS.gene34720:intron |
| CGTGTTAGGACCTGAATGTA+AGG | 0.483547 | 8.1:-45187280 | None:intergenic |
| GTCGAACTCGTCGGCATCGA+CGG | 0.484624 | 8.1:+45187097 | MS.gene34720:CDS |
| TTTGTTCGATACGGATTGGA+TGG | 0.485266 | 8.1:+45192844 | MS.gene34720:CDS |
| ATGGGAAGAGAAGTTTATCA+TGG | 0.487612 | 8.1:+45192863 | MS.gene34720:CDS |
| CATAATGAAAATTTAATGGA+TGG | 0.488610 | 8.1:+45192550 | MS.gene34720:CDS |
| GGATGGGCCTGGAGCAGTAT+TGG | 0.491457 | 8.1:+45192567 | MS.gene34720:CDS |
| ATGGCTTTATAGGTTGTGCT+TGG | 0.491540 | 8.1:+45193093 | MS.gene34720:intron |
| AGCATGAGAGTTTCAATGCT+GGG | 0.498161 | 8.1:+45192521 | MS.gene34720:CDS |
| AAGCTCTATTTGTCAAGAAA+GGG | 0.498756 | 8.1:-45191400 | None:intergenic |
| GCGTCCATCTGTGCTCTAGC+CGG | 0.500700 | 8.1:+45194860 | MS.gene34720:CDS |
| CCTGCACTGTGTTGTTGGCA+AGG | 0.507278 | 8.1:-45189008 | None:intergenic |
| GCTGATTCAGGTGGTGGCCA+AGG | 0.516252 | 8.1:+45193570 | MS.gene34720:CDS |
| GGCAGCATTTCTTGTTGCTG+TGG | 0.519356 | 8.1:+45191448 | MS.gene34720:CDS |
| TGGGATGCTCTCTTTGGTGG+TGG | 0.522974 | 8.1:+45194815 | MS.gene34720:CDS |
| CTATCCCTCGAGTATAATCA+TGG | 0.523520 | 8.1:-45193239 | None:intergenic |
| GAAAATTTAATGGATGGGCC+TGG | 0.525286 | 8.1:+45192556 | MS.gene34720:CDS |
| ACGGCGATGAGCCTCGGCAT+CGG | 0.526213 | 8.1:+45187122 | MS.gene34720:CDS |
| ACGGCGACGGCGATGAGCCT+CGG | 0.526343 | 8.1:+45187116 | MS.gene34720:CDS |
| CATTTAAAGGGACCCGAACA+AGG | 0.526346 | 8.1:+45188947 | MS.gene34720:CDS |
| ATGGACGCCAAAACAAATGC+TGG | 0.527268 | 8.1:-45194845 | None:intergenic |
| CAAGCAGAACAAACACAACC+AGG | 0.532679 | 8.1:-45193302 | None:intergenic |
| ATCCTCGCTTAACTTACCAT+TGG | 0.532882 | 8.1:-45192473 | None:intergenic |
| AGGAATCAAGTATGCTTCCC+TGG | 0.535395 | 8.1:+45193284 | MS.gene34720:CDS |
| TCTGCCAAAAGTGCTCTAGC+TGG | 0.536289 | 8.1:-45189143 | None:intergenic |
| AACGAAGCATTATTCTTCGT+CGG | 0.537348 | 8.1:-45187181 | None:intergenic |
| TTGTTCGATACGGATTGGAT+GGG | 0.538564 | 8.1:+45192845 | MS.gene34720:CDS |
| AAAACTTCACTCACCGCAAG+TGG | 0.538916 | 8.1:-45193330 | None:intergenic |
| TAGAGTTGCAACAATGCCAC+CGG | 0.540131 | 8.1:-45194879 | None:intergenic |
| AAGTTAACCAATACTGCTCC+AGG | 0.544867 | 8.1:-45192574 | None:intergenic |
| CAACACGTCGTCGCAATGGC+GGG | 0.546587 | 8.1:+45187007 | None:intergenic |
| CGTCTGGTGCTAGTGGAAAG+TGG | 0.547536 | 8.1:+45189580 | MS.gene34720:CDS |
| AACATTCTAGGATATTCGTC+TGG | 0.547818 | 8.1:+45189564 | MS.gene34720:CDS |
| TTTATCATGGGGATCCAAAA+GGG | 0.547987 | 8.1:+45192876 | MS.gene34720:CDS |
| ATAATGAAAATTTAATGGAT+GGG | 0.551396 | 8.1:+45192551 | MS.gene34720:CDS |
| TGGGAAGAGAAGTTTATCAT+GGG | 0.553628 | 8.1:+45192864 | MS.gene34720:CDS |
| AGACGTCCGTTCATTCTGGC+AGG | 0.553653 | 8.1:+45188637 | MS.gene34720:CDS |
| AAGCATGAGAGTTTCAATGC+TGG | 0.555243 | 8.1:+45192520 | MS.gene34720:CDS |
| GGATATTCGTCTGGTGCTAG+TGG | 0.556399 | 8.1:+45189573 | MS.gene34720:CDS |
| GGTTGTAATGGCTCTCACTT+GGG | 0.562605 | 8.1:+45192642 | MS.gene34720:CDS |
| TCTGTCCATGATTATACTCG+AGG | 0.565758 | 8.1:+45193234 | MS.gene34720:CDS |
| GGATCCAAAAGGGACCACTT+TGG | 0.567204 | 8.1:+45192886 | MS.gene34720:CDS |
| CAACTCTGCTGTAACAGCAA+AGG | 0.569689 | 8.1:-45193544 | None:intergenic |
| TTACAGGTTCAACCTTGTGT+TGG | 0.571947 | 8.1:+45188577 | MS.gene34720:intron |
| ACCAGCACTGAATGCATAGC+AGG | 0.572610 | 8.1:-45192622 | None:intergenic |
| TTGACTGCTGATTCAGGTGG+TGG | 0.581081 | 8.1:+45193564 | MS.gene34720:CDS |
| TATGATCAAGGTGTTAGAGA+AGG | 0.584148 | 8.1:+45192920 | MS.gene34720:CDS |
| GCACCCATCAACTTACACAT+TGG | 0.584425 | 8.1:-45193138 | None:intergenic |
| TCTGTTATAAATGAGTCCAA+TGG | 0.584815 | 8.1:+45192457 | MS.gene34720:CDS |
| GCCACCGGCTAGAGCACAGA+TGG | 0.585393 | 8.1:-45194864 | None:intergenic |
| CATGCAATTGGAGCAAGTGA+AGG | 0.590178 | 8.1:+45193264 | MS.gene34720:CDS |
| AGAGATCCTGCCAGAATGAA+CGG | 0.591446 | 8.1:-45188643 | None:intergenic |
| TGGCCCCATTACAGGCCTTG+TGG | 0.591978 | 8.1:+45187788 | MS.gene34720:CDS |
| GATGGGTGCAAGATTAGTAT+GGG | 0.593697 | 8.1:+45193152 | MS.gene34720:CDS |
| CTGTCCATGATTATACTCGA+GGG | 0.596081 | 8.1:+45193235 | MS.gene34720:CDS |
| CTCGTCGGCATCGACGGCGA+CGG | 0.596347 | 8.1:+45187103 | MS.gene34720:CDS |
| TGTTTACTTGCAGTAGTAAG+CGG | 0.596694 | 8.1:-45192361 | None:intergenic |
| AAACTGAACACCAGCAGCAA+CGG | 0.601392 | 8.1:-45187227 | None:intergenic |
| ATAAAGATCTACTTCCAAAG+TGG | 0.605985 | 8.1:-45192900 | None:intergenic |
| TCCATCTGTGCTCTAGCCGG+TGG | 0.612635 | 8.1:+45194863 | MS.gene34720:CDS |
| CCTTGCCAACAACACAGTGC+AGG | 0.612926 | 8.1:+45189008 | MS.gene34720:CDS |
| TCTGCTTGGATTTCCACTTG+CGG | 0.613392 | 8.1:+45193317 | MS.gene34720:CDS |
| ATCCCATGGACCAGAACCAA+GGG | 0.616521 | 8.1:-45194798 | None:intergenic |
| CATCCCATGGACCAGAACCA+AGG | 0.629070 | 8.1:-45194799 | None:intergenic |
| CCACCAAAGAGAGCATCCCA+TGG | 0.630045 | 8.1:-45194812 | None:intergenic |
| GCCGCGGAAGTCGAACTCGT+CGG | 0.634440 | 8.1:+45187088 | MS.gene34720:CDS |
| GCATGAGAGTTTCAATGCTG+GGG | 0.638752 | 8.1:+45192522 | MS.gene34720:CDS |
| TTAAGATCGATCCGATGCCG+AGG | 0.646226 | 8.1:-45187133 | None:intergenic |
| TTAGATTCTTATAAGGAACA+CGG | 0.649952 | 8.1:-45187051 | None:intergenic |
| GAACCAATGTGTAAGTTGAT+GGG | 0.650882 | 8.1:+45193135 | MS.gene34720:CDS |
| AACAGCAAAGGGAACACTGT+AGG | 0.652099 | 8.1:-45193532 | None:intergenic |
| GGGAAGAGAAGTTTATCATG+GGG | 0.653043 | 8.1:+45192865 | MS.gene34720:CDS |
| GCCGACGAGTTCGACTTCCG+CGG | 0.659454 | 8.1:-45187089 | None:intergenic |
| ATTTAAAGGGACCCGAACAA+GGG | 0.660883 | 8.1:+45188948 | MS.gene34720:CDS |
| CTACCACAAGGCCTGTAATG+GGG | 0.667284 | 8.1:-45187791 | None:intergenic |
| TCACTCCAAATACCAACACA+AGG | 0.669287 | 8.1:-45188589 | None:intergenic |
| AGCACTGAATGCATAGCAGG+TGG | 0.671343 | 8.1:-45192619 | None:intergenic |
| GACGAGTTCGACTTCCGCGG+CGG | 0.675392 | 8.1:-45187086 | None:intergenic |
| GACAAATAGAGCTTGCTGTG+AGG | 0.676643 | 8.1:+45191409 | MS.gene34720:CDS |
| AAGCAGAACAAACACAACCA+GGG | 0.677109 | 8.1:-45193301 | None:intergenic |
| GTCCAATGGTAAGTTAAGCG+AGG | 0.680050 | 8.1:+45192471 | MS.gene34720:CDS |
| GTTAAGCGAGGATCGCTCTG+AGG | 0.695917 | 8.1:+45192483 | MS.gene34720:CDS |
| GGTAATGGATCTCCGCGCGG+CGG | 0.696957 | 8.1:-45187160 | None:intergenic |
| AAGAAACGATTCTTCCGCCG+CGG | 0.705197 | 8.1:+45187072 | MS.gene34720:CDS |
| AGAGCTTGCTGTGAGGCATG+TGG | 0.720128 | 8.1:+45191416 | MS.gene34720:CDS |
| GTCGGTAATGGATCTCCGCG+CGG | 0.724346 | 8.1:-45187163 | None:intergenic |
| AGACATTGGATACATATTAG+GGG | 0.732708 | 8.1:+45188789 | MS.gene34720:CDS |
| GATCTTAATTCACCGCCGCG+CGG | 0.737072 | 8.1:+45187148 | MS.gene34720:CDS |
| GAGTTGACTGCTGATTCAGG+TGG | 0.739601 | 8.1:+45193561 | MS.gene34720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 45187022 | 45194955 | 45187022 | ID=MS.gene34720 |
| chr8.1 | mRNA | 45187022 | 45194955 | 45187022 | ID=MS.gene34720.t1;Parent=MS.gene34720 |
| chr8.1 | exon | 45187022 | 45187291 | 45187022 | ID=MS.gene34720.t1.exon1;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45187022 | 45187291 | 45187022 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45187744 | 45187809 | 45187744 | ID=MS.gene34720.t1.exon2;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45187744 | 45187809 | 45187744 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45188583 | 45188681 | 45188583 | ID=MS.gene34720.t1.exon3;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45188583 | 45188681 | 45188583 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45188766 | 45188830 | 45188766 | ID=MS.gene34720.t1.exon4;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45188766 | 45188830 | 45188766 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45188945 | 45189029 | 45188945 | ID=MS.gene34720.t1.exon5;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45188945 | 45189029 | 45188945 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45189140 | 45189173 | 45189140 | ID=MS.gene34720.t1.exon6;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45189140 | 45189173 | 45189140 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45189508 | 45189607 | 45189508 | ID=MS.gene34720.t1.exon7;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45189508 | 45189607 | 45189508 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45191394 | 45191469 | 45191394 | ID=MS.gene34720.t1.exon8;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45191394 | 45191469 | 45191394 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45192310 | 45192663 | 45192310 | ID=MS.gene34720.t1.exon9;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45192310 | 45192663 | 45192310 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45192824 | 45192967 | 45192824 | ID=MS.gene34720.t1.exon10;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45192824 | 45192967 | 45192824 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45193105 | 45193338 | 45193105 | ID=MS.gene34720.t1.exon11;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45193105 | 45193338 | 45193105 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45193528 | 45193591 | 45193528 | ID=MS.gene34720.t1.exon12;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45193528 | 45193591 | 45193528 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45193674 | 45193717 | 45193674 | ID=MS.gene34720.t1.exon13;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45193674 | 45193717 | 45193674 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| chr8.1 | exon | 45194788 | 45194955 | 45194788 | ID=MS.gene34720.t1.exon14;Parent=MS.gene34720.t1 |
| chr8.1 | CDS | 45194788 | 45194955 | 45194788 | ID=cds.MS.gene34720.t1;Parent=MS.gene34720.t1 |
| Gene Sequence |
| Protein sequence |
