Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34847.t1 | RHN41243.1 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.80E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34847.t1 | Q56XY2 | 84.0 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.4e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34847.t1 | G7LEM4 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 1.3e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70743 | MS.gene34847 | PPI |
| MS.gene006260 | MS.gene34847 | PPI |
| MS.gene061152 | MS.gene34847 | PPI |
| MS.gene25822 | MS.gene34847 | PPI |
| MS.gene49124 | MS.gene34847 | PPI |
| MS.gene34135 | MS.gene34847 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34847.t1 | MTR_8g062340 | 98.252 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 0.0 | 578 |
| MS.gene34847.t1 | MTR_8g062340 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 569 |
| MS.gene34847.t1 | MTR_5g089950 | 94.097 | 288 | 17 | 0 | 1 | 288 | 1 | 288 | 0.0 | 559 |
| MS.gene34847.t1 | MTR_3g080040 | 39.300 | 257 | 148 | 4 | 1 | 256 | 1 | 250 | 6.58e-57 | 184 |
| MS.gene34847.t1 | MTR_1g100240 | 30.688 | 189 | 122 | 3 | 6 | 190 | 61 | 244 | 1.91e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34847.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene34847.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene34847.t1 | AT5G22370 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 5.93e-177 | 490 |
| MS.gene34847.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene34847.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene34847.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene34847.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene34847.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene34847.t1 | AT4G12790 | 39.286 | 252 | 145 | 5 | 1 | 251 | 1 | 245 | 3.06e-55 | 180 |
| MS.gene34847.t1 | AT4G21800 | 29.570 | 186 | 128 | 2 | 6 | 190 | 45 | 228 | 7.83e-18 | 83.2 |
| MS.gene34847.t1 | AT4G21800 | 29.570 | 186 | 128 | 2 | 6 | 190 | 45 | 228 | 7.83e-18 | 83.2 |
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATCTATATTTATTATTA+AGG | - | 57429:19247-19266 | MS.gene34847:intergenic | 10.0% |
| !! | AAATTAACTGTTATATTGAA+TGG | + | 57429:20046-20065 | MS.gene34847:intron | 15.0% |
| !! | AATTAACTGTTATATTGAAT+GGG | + | 57429:20047-20066 | MS.gene34847:intron | 15.0% |
| !! | CAAATAAGAAAATAAAACTT+AGG | - | 57429:21301-21320 | MS.gene34847:intergenic | 15.0% |
| !! | CATAAAGAAATTAACTTTAA+GGG | + | 57429:20721-20740 | MS.gene34847:CDS | 15.0% |
| !! | TATAGTTAAGTTAATTGATA+TGG | + | 57429:19217-19236 | MS.gene34847:intron | 15.0% |
| !! | TATTTGAGAAATTATTAAGA+AGG | + | 57429:19625-19644 | MS.gene34847:intron | 15.0% |
| !! | TCATAAAGAAATTAACTTTA+AGG | + | 57429:20720-20739 | MS.gene34847:CDS | 15.0% |
| !!! | AATATTGTTGTTATTCTTAA+AGG | + | 57429:19175-19194 | MS.gene34847:intron | 15.0% |
| !!! | AGTTTTTTTTTAATGGTAAA+TGG | - | 57429:19606-19625 | MS.gene34847:intergenic | 15.0% |
| !!! | CTCAAATAGTTTTTTTTTAA+TGG | - | 57429:19613-19632 | MS.gene34847:intergenic | 15.0% |
| !! | AAAAAAAACTGTGTATCTTA+AGG | - | 57429:21833-21852 | MS.gene34847:intergenic | 20.0% |
| !! | AATACTTAAAACAACCAAAA+AGG | - | 57429:19356-19375 | MS.gene34847:intergenic | 20.0% |
| !! | AGAGATACTAATGTAAAATA+TGG | + | 57429:21592-21611 | MS.gene34847:intron | 20.0% |
| !! | ATAAAATATTAACCAAATCG+TGG | - | 57429:21641-21660 | MS.gene34847:intergenic | 20.0% |
| !! | ATAACAACAATATTTCAAAG+AGG | - | 57429:19169-19188 | MS.gene34847:intergenic | 20.0% |
| !! | ATACCTAAATTAGTAGAAAT+TGG | - | 57429:19051-19070 | MS.gene34847:intergenic | 20.0% |
| !! | TAATGAAATCAAATATATGC+TGG | + | 57429:21706-21725 | MS.gene34847:intron | 20.0% |
| !! | TACGAACAAAAGAAAAAATT+AGG | - | 57429:21986-22005 | MS.gene34847:intergenic | 20.0% |
| !! | TTATAAGCTGCTAATATAAA+AGG | - | 57429:21689-21708 | MS.gene34847:intergenic | 20.0% |
| !! | TTTCCAATTTCTACTAATTT+AGG | + | 57429:19045-19064 | MS.gene34847:intron | 20.0% |
| !!! | AGGAAACTACATTTTAATAA+AGG | - | 57429:21281-21300 | MS.gene34847:intergenic | 20.0% |
| !!! | ATTTTCATTTATGCAGTTAA+CGG | + | 57429:20802-20821 | MS.gene34847:intron | 20.0% |
| !!! | CAAATTAGTTCTTGAAATAA+TGG | - | 57429:20781-20800 | MS.gene34847:intergenic | 20.0% |
| !!! | TTAAATGCATTTTTTTAAGC+TGG | + | 57429:21003-21022 | MS.gene34847:intron | 20.0% |
| !!! | TTAAGTTGTTAATCAAAACA+GGG | - | 57429:20103-20122 | MS.gene34847:intergenic | 20.0% |
| !!! | TTTTACAACATTAGATATTC+AGG | + | 57429:21947-21966 | MS.gene34847:CDS | 20.0% |
| ! | AAGAAAAAATTAGGCATATC+TGG | - | 57429:21977-21996 | MS.gene34847:intergenic | 25.0% |
| ! | AGTGCATTTAAGGATAATTT+AGG | - | 57429:20551-20570 | MS.gene34847:intergenic | 25.0% |
| ! | ATCTAGAGAAAAATATTGAC+TGG | + | 57429:20456-20475 | MS.gene34847:CDS | 25.0% |
| ! | CAATATTTCAAAGAGGTTAA+TGG | - | 57429:19162-19181 | MS.gene34847:intergenic | 25.0% |
| ! | CAATTTAATATGGCATGAAA+TGG | - | 57429:21545-21564 | MS.gene34847:intergenic | 25.0% |
| ! | CATAGACAAGACAAATAAAA+GGG | - | 57429:21518-21537 | MS.gene34847:intergenic | 25.0% |
| ! | GAAGAACTAGAAAAACTATT+GGG | + | 57429:19460-19479 | MS.gene34847:intron | 25.0% |
| ! | TATCTATAATAATCCCAATC+AGG | - | 57429:22164-22183 | MS.gene34847:intergenic | 25.0% |
| ! | TGTATAAAAATCAAGGTTGA+AGG | - | 57429:21080-21099 | MS.gene34847:intergenic | 25.0% |
| ! | TTAATATTTACTCTTTCGTC+CGG | - | 57429:19565-19584 | MS.gene34847:intergenic | 25.0% |
| ! | TTAGTTTATTTGAGCTTATC+TGG | - | 57429:20343-20362 | MS.gene34847:intergenic | 25.0% |
| ! | TTCACAGCAACAATTTAATA+TGG | - | 57429:21555-21574 | MS.gene34847:intergenic | 25.0% |
| !! | ATAAGTACTTGTGAGATTTT+TGG | - | 57429:20319-20338 | MS.gene34847:intergenic | 25.0% |
| !! | ATTGATTTAATTGAGAGCTA+CGG | + | 57429:20944-20963 | MS.gene34847:CDS | 25.0% |
| !! | GTTAAGTTGTTAATCAAAAC+AGG | - | 57429:20104-20123 | MS.gene34847:intergenic | 25.0% |
| !! | TGGTTAAGTTTGGTTTAAAT+GGG | + | 57429:21767-21786 | MS.gene34847:intron | 25.0% |
| !! | TTTTGACAAGACATTTATGT+GGG | - | 57429:20924-20943 | MS.gene34847:intergenic | 25.0% |
| !! | TTTTTGACAAGACATTTATG+TGG | - | 57429:20925-20944 | MS.gene34847:intergenic | 25.0% |
| !!! | ACTATTTTTATAAGCTGTCA+TGG | + | 57429:20227-20246 | MS.gene34847:intron | 25.0% |
| AAATTGAAACCTCTTCTGAA+AGG | + | 57429:20488-20507 | MS.gene34847:CDS | 30.0% | |
| AACTAGAAAAACTATTGGGT+GGG | + | 57429:19464-19483 | MS.gene34847:intron | 30.0% | |
| AAGACAAATAAAAGGGCAAA+GGG | - | 57429:21511-21530 | MS.gene34847:intergenic | 30.0% | |
| AGAGTACATCAAATCAATAG+AGG | + | 57429:19432-19451 | MS.gene34847:intron | 30.0% | |
| ATGTAATAACCTTTCAGAAG+AGG | - | 57429:20500-20519 | MS.gene34847:intergenic | 30.0% | |
| ATTTCAAAGAGGTTAATGGA+AGG | - | 57429:19158-19177 | MS.gene34847:intergenic | 30.0% | |
| GAAGAAAAAATAGTTCCACT+TGG | - | 57429:20670-20689 | MS.gene34847:intergenic | 30.0% | |
| GCACATCTGTATAAAAATCA+AGG | - | 57429:21087-21106 | MS.gene34847:intergenic | 30.0% | |
| GCATAGACAAGACAAATAAA+AGG | - | 57429:21519-21538 | MS.gene34847:intergenic | 30.0% | |
| GGAAGAACTAGAAAAACTAT+TGG | + | 57429:19459-19478 | MS.gene34847:intron | 30.0% | |
| GTTCAGTAGAAATTCTAAGT+TGG | + | 57429:22012-22031 | MS.gene34847:intron | 30.0% | |
| TAATATTTACTCTTTCGTCC+GGG | - | 57429:19564-19583 | MS.gene34847:intergenic | 30.0% | |
| TGTTTAATGTCATAACCAAG+AGG | + | 57429:19398-19417 | MS.gene34847:intron | 30.0% | |
| TTTATTTGTCTTGTCTATGC+TGG | + | 57429:21519-21538 | MS.gene34847:intron | 30.0% | |
| TTTGACAAGACATTTATGTG+GGG | - | 57429:20923-20942 | MS.gene34847:intergenic | 30.0% | |
| ! | AAGTTGGATTATCCTTTTAC+AGG | + | 57429:22028-22047 | MS.gene34847:intron | 30.0% |
| ! | AGAGAAAAATATTGACTGGT+TGG | + | 57429:20460-20479 | MS.gene34847:CDS | 30.0% |
| ! | GTGGTTAAGTTTGGTTTAAA+TGG | + | 57429:21766-21785 | MS.gene34847:intron | 30.0% |
| ! | TAATTTTCCTCGTTTGCAAA+TGG | + | 57429:21744-21763 | MS.gene34847:intron | 30.0% |
| ! | TGATTACACATTTGAAGTGT+AGG | + | 57429:19779-19798 | MS.gene34847:intron | 30.0% |
| !! | GAGATTTTTGGAAGAACTTA+TGG | - | 57429:20307-20326 | MS.gene34847:intergenic | 30.0% |
| !! | GGCTCTAATAAAAGGTATTA+AGG | - | 57429:20082-20101 | MS.gene34847:intergenic | 30.0% |
| !! | GTAATTACTTTTGCAAGCTA+GGG | + | 57429:20980-20999 | MS.gene34847:intron | 30.0% |
| !! | GTTTTCTACTTTTCAAATGC+AGG | + | 57429:19084-19103 | MS.gene34847:intron | 30.0% |
| !! | TATCTACTCTTTGATTTTCC+TGG | + | 57429:20644-20663 | MS.gene34847:CDS | 30.0% |
| !! | TGTAATTACTTTTGCAAGCT+AGG | + | 57429:20979-20998 | MS.gene34847:intron | 30.0% |
| AACTAATCTAAACAGACCCT+AGG | + | 57429:20357-20376 | MS.gene34847:intron | 35.0% | |
| AAGAGGTTAATGGAAGGATA+CGG | - | 57429:19152-19171 | MS.gene34847:intergenic | 35.0% | |
| AAGCTGATAGACAAAACCAA+TGG | + | 57429:22077-22096 | MS.gene34847:CDS | 35.0% | |
| ACAGTAAGACACAAATACCT+AGG | - | 57429:20377-20396 | MS.gene34847:intergenic | 35.0% | |
| ACTAGAAAAACTATTGGGTG+GGG | + | 57429:19465-19484 | MS.gene34847:intron | 35.0% | |
| AGAGATTAATGAGATGGACA+GGG | + | 57429:19652-19671 | MS.gene34847:intron | 35.0% | |
| AGCTGATAGACAAAACCAAT+GGG | + | 57429:22078-22097 | MS.gene34847:CDS | 35.0% | |
| ATGTTTCAGTGTTAATGGTG+TGG | + | 57429:19927-19946 | MS.gene34847:intron | 35.0% | |
| ATTCTCTCTTTCTCTCTATG+CGG | + | 57429:21659-21678 | MS.gene34847:intron | 35.0% | |
| ATTTGTCTTGTCTATGCTGA+GGG | + | 57429:21316-21335 | MS.gene34847:intron | 35.0% | |
| CAAGACAAATAAAAGGGCAA+AGG | - | 57429:21512-21531 | MS.gene34847:intergenic | 35.0% | |
| CAGTAAGACACAAATACCTA+GGG | - | 57429:20376-20395 | MS.gene34847:intergenic | 35.0% | |
| CATATGTAGCATTGTGGATA+AGG | - | 57429:20894-20913 | MS.gene34847:intergenic | 35.0% | |
| CATCAAATCAATAGAGGTAG+AGG | + | 57429:19438-19457 | MS.gene34847:intron | 35.0% | |
| CGTCTATGTTTCAGTGTTAA+TGG | + | 57429:19922-19941 | MS.gene34847:intron | 35.0% | |
| CTAGAGTAGTTTAGCTGAAT+AGG | - | 57429:20591-20610 | MS.gene34847:intergenic | 35.0% | |
| CTTATCCACAATGCTACATA+TGG | + | 57429:20892-20911 | MS.gene34847:CDS | 35.0% | |
| GAACTAGAAAAACTATTGGG+TGG | + | 57429:19463-19482 | MS.gene34847:intron | 35.0% | |
| GAGTTTAGCAAGATTGCTAT+GGG | + | 57429:22134-22153 | MS.gene34847:CDS | 35.0% | |
| GAGTTTCATGATGACATTCT+TGG | - | 57429:20702-20721 | MS.gene34847:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAGA+TGG | + | 57429:19646-19665 | MS.gene34847:intron | 35.0% | |
| GGCAAAACAACTTACTGTAA+TGG | + | 57429:18934-18953 | MS.gene34847:CDS | 35.0% | |
| GTCATGATAGAACATTCTCT+TGG | + | 57429:19308-19327 | MS.gene34847:CDS | 35.0% | |
| GTGTAATCACACAGAACTAT+TGG | - | 57429:19768-19787 | MS.gene34847:intergenic | 35.0% | |
| TAGAGATTAATGAGATGGAC+AGG | + | 57429:19651-19670 | MS.gene34847:intron | 35.0% | |
| TAGTTCCATATGTAGCATTG+TGG | - | 57429:20900-20919 | MS.gene34847:intergenic | 35.0% | |
| TATCTGTGTTAGTGTTTCAG+AGG | + | 57429:19960-19979 | MS.gene34847:intron | 35.0% | |
| TATTTGCAGAAAGCTCACAA+AGG | + | 57429:21887-21906 | MS.gene34847:intron | 35.0% | |
| TATTTGTCTTGTCTATGCTG+AGG | + | 57429:21315-21334 | MS.gene34847:intron | 35.0% | |
| TGAAATAATGGTTCGACACT+AGG | - | 57429:20769-20788 | MS.gene34847:intergenic | 35.0% | |
| TGAGTTTAGCAAGATTGCTA+TGG | + | 57429:22133-22152 | MS.gene34847:CDS | 35.0% | |
| TTAATGTCATAACCAAGAGG+AGG | + | 57429:19401-19420 | MS.gene34847:intron | 35.0% | |
| TTGCAAATGGTGGTTAAGTT+TGG | + | 57429:21757-21776 | MS.gene34847:intron | 35.0% | |
| ! | CAAAACAGGGCTCTAATAAA+AGG | - | 57429:20090-20109 | MS.gene34847:intergenic | 35.0% |
| ! | GAGGTAAGTCTATTCCTTTT+TGG | + | 57429:19339-19358 | MS.gene34847:intron | 35.0% |
| ! | GTAGTTTGTGAGTGCATTTA+AGG | - | 57429:20561-20580 | MS.gene34847:intergenic | 35.0% |
| ! | TCTCAGTTTCTCAGTCTTAT+TGG | + | 57429:18961-18980 | MS.gene34847:CDS | 35.0% |
| ! | TGAATGTGCTGTTAACATTG+AGG | + | 57429:19265-19284 | MS.gene34847:CDS | 35.0% |
| !! | AGTTTCTCAGTCTTATTGGA+AGG | + | 57429:18965-18984 | MS.gene34847:CDS | 35.0% |
| !! | TCTACTTTTCAAATGCAGGA+AGG | + | 57429:19088-19107 | MS.gene34847:intron | 35.0% |
| AAAAATAGTTCCACTTGGCC+AGG | - | 57429:20665-20684 | None:intergenic | 40.0% | |
| AACAGTCTCTTGTGTAAGAC+AGG | + | 57429:21405-21424 | MS.gene34847:intron | 40.0% | |
| AAGCTGTCATGGAGAACTTA+TGG | + | 57429:20238-20257 | MS.gene34847:intron | 40.0% | |
| ACAGTCTCTTGTGTAAGACA+GGG | + | 57429:21406-21425 | MS.gene34847:intron | 40.0% | |
| ACCAATGGGTACATATTTGC+CGG | + | 57429:22092-22111 | MS.gene34847:CDS | 40.0% | |
| AGCTGTCATGGAGAACTTAT+GGG | + | 57429:20239-20258 | MS.gene34847:intron | 40.0% | |
| CACTCTCTTTGTCCTGTAAA+AGG | - | 57429:22043-22062 | MS.gene34847:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | 57429:21437-21456 | MS.gene34847:intron | 40.0% | |
| CTAGAAAAACTATTGGGTGG+GGG | + | 57429:19466-19485 | MS.gene34847:intron | 40.0% | |
| GAACACGCTTACAATCTGAA+AGG | - | 57429:19830-19849 | MS.gene34847:intergenic | 40.0% | |
| GAACATTCTCTTGGTCCTAA+CGG | + | 57429:19317-19336 | MS.gene34847:CDS | 40.0% | |
| GAGATTAATGAGATGGACAG+GGG | + | 57429:19653-19672 | MS.gene34847:intron | 40.0% | |
| GATGACAATACTCCACGATT+TGG | + | 57429:21626-21645 | MS.gene34847:intron | 40.0% | |
| GTGTTTGGGCAAGTAGTAAT+TGG | + | 57429:18898-18917 | MS.gene34847:CDS | 40.0% | |
| GTTCATAGGGGATAAAGAGT+TGG | + | 57429:19522-19541 | MS.gene34847:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | 57429:21362-21381 | MS.gene34847:intron | 40.0% | |
| TACGGTAACGAATCATTAGC+AGG | - | 57429:19134-19153 | MS.gene34847:intergenic | 40.0% | |
| TAGAAAAACTATTGGGTGGG+GGG | + | 57429:19467-19486 | MS.gene34847:intron | 40.0% | |
| TGAAGGCTGCAACAATGAAA+TGG | - | 57429:21063-21082 | MS.gene34847:intergenic | 40.0% | |
| TGTTAGTGTTTCAGAGGTGA+TGG | + | 57429:19966-19985 | MS.gene34847:intron | 40.0% | |
| TTAACCACCATTTGCAAACG+AGG | - | 57429:21754-21773 | MS.gene34847:intergenic | 40.0% | |
| TTACACAAGAGACTGTTTCC+AGG | - | 57429:21402-21421 | MS.gene34847:intergenic | 40.0% | |
| TTCACTTGTGTTGTACAAGC+AGG | + | 57429:20413-20432 | MS.gene34847:intron | 40.0% | |
| TTTGTCTTGTCTATGCTGAG+GGG | + | 57429:21317-21336 | MS.gene34847:intron | 40.0% | |
| ! | ACACATTTGAAGTGTAGGCA+TGG | + | 57429:19784-19803 | MS.gene34847:intron | 40.0% |
| ! | AGCAGGTCTTGTATACTGTA+TGG | + | 57429:20430-20449 | MS.gene34847:intron | 40.0% |
| ! | CACATTTGAAGTGTAGGCAT+GGG | + | 57429:19785-19804 | MS.gene34847:intron | 40.0% |
| ! | GAAGGTTGCTGTTGTCAATT+TGG | + | 57429:19106-19125 | MS.gene34847:CDS | 40.0% |
| ! | TACAGGACAAAGAGAGTGTA+GGG | + | 57429:22045-22064 | MS.gene34847:intron | 40.0% |
| ! | TGGGTGATGGTATATAGCAT+CGG | + | 57429:19804-19823 | MS.gene34847:intron | 40.0% |
| ! | TTACAGGACAAAGAGAGTGT+AGG | + | 57429:22044-22063 | MS.gene34847:intron | 40.0% |
| ! | TTTTCCTCGTTTGCAAATGG+TGG | + | 57429:21747-21766 | MS.gene34847:intron | 40.0% |
| AACTGCACTTGCATCTATGC+CGG | - | 57429:22114-22133 | MS.gene34847:intergenic | 45.0% | |
| AGAAAAACTATTGGGTGGGG+GGG | + | 57429:19468-19487 | MS.gene34847:intron | 45.0% | |
| ATCCTCACTCTGCTAAGTAC+AGG | + | 57429:21143-21162 | MS.gene34847:CDS | 45.0% | |
| ATTGAGAGCTACGGAAAGCT+AGG | + | 57429:20953-20972 | MS.gene34847:CDS | 45.0% | |
| CAAGTAGTAATTGGTCCTCC+TGG | + | 57429:18907-18926 | MS.gene34847:CDS | 45.0% | |
| CATAGGGGATAAAGAGTTGG+AGG | + | 57429:19525-19544 | MS.gene34847:intron | 45.0% | |
| CTCTTGTGTAAGACAGGGTA+AGG | + | 57429:21411-21430 | MS.gene34847:intron | 45.0% | |
| CTTATCCCACTAAGTGGGAT+CGG | - | 57429:19723-19742 | MS.gene34847:intergenic | 45.0% | |
| GATCGGCTACATGGATCAAA+CGG | - | 57429:19706-19725 | MS.gene34847:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | 57429:21436-21455 | MS.gene34847:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | 57429:21433-21452 | MS.gene34847:intron | 45.0% | |
| GGAATAGACTTACCTCCGTT+AGG | - | 57429:19335-19354 | MS.gene34847:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | 57429:21368-21387 | MS.gene34847:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | 57429:21369-21388 | MS.gene34847:intron | 45.0% | |
| TGTCATAACCAAGAGGAGGT+CGG | + | 57429:19405-19424 | MS.gene34847:intron | 45.0% | |
| TTTCGTCCGGGTTTAAACTC+AGG | - | 57429:19552-19571 | MS.gene34847:intergenic | 45.0% | |
| ! | AATGCACTGATGTACTTCCC+AGG | - | 57429:20863-20882 | MS.gene34847:intergenic | 45.0% |
| ! | ATGCACTGATGTACTTCCCA+GGG | - | 57429:20862-20881 | MS.gene34847:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | 57429:19728-19747 | MS.gene34847:intergenic | 45.0% |
| ! | TACAGGTGTGCTTTGTTGTG+TGG | + | 57429:21160-21179 | MS.gene34847:intron | 45.0% |
| !! | CTTTGATTTTCCTGGCCAAG+TGG | + | 57429:20652-20671 | MS.gene34847:CDS | 45.0% |
| !! | GTTGGGTTGGGTAGTTCATA+GGG | + | 57429:19509-19528 | MS.gene34847:intron | 45.0% |
| !! | TAAGTTGTTTTGCCAGAGCC+AGG | - | 57429:18928-18947 | MS.gene34847:intergenic | 45.0% |
| !! | TTGGGTTGGGTAGTTCATAG+GGG | + | 57429:19510-19529 | MS.gene34847:intron | 45.0% |
| ACTAAGTGGGATCGGCTACA+TGG | - | 57429:19715-19734 | MS.gene34847:intergenic | 50.0% | |
| ACTTCCCAGGGTCACTACAA+AGG | - | 57429:20850-20869 | MS.gene34847:intergenic | 50.0% | |
| ATGTAGCCGATCCCACTTAG+TGG | + | 57429:19714-19733 | MS.gene34847:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | 57429:21346-21365 | MS.gene34847:intergenic | 50.0% | |
| CACCTGTACTTAGCAGAGTG+AGG | - | 57429:21148-21167 | MS.gene34847:intergenic | 50.0% | |
| CATTCTCTTGGTCCTAACGG+AGG | + | 57429:19320-19339 | MS.gene34847:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | 57429:19726-19745 | MS.gene34847:intron | 50.0% | |
| CGATCCCACTTAGTGGGATA+AGG | + | 57429:19721-19740 | MS.gene34847:intron | 50.0% | |
| CTCACCTTTGTAGTGACCCT+GGG | + | 57429:20843-20862 | MS.gene34847:CDS | 50.0% | |
| GCAGTTAACGGCAGTGCATT+TGG | + | 57429:20814-20833 | MS.gene34847:intron | 50.0% | |
| GCCGGCAAATATGTACCCAT+TGG | - | 57429:22096-22115 | MS.gene34847:intergenic | 50.0% | |
| GGAGGTCCTGAGTTTAAACC+CGG | + | 57429:19543-19562 | MS.gene34847:intron | 50.0% | |
| TAAAAGGGCAAAGGGCAACC+CGG | - | 57429:21503-21522 | MS.gene34847:intergenic | 50.0% | |
| TCTATGCTGAGGGGTAACCT+TGG | + | 57429:21326-21345 | MS.gene34847:intron | 50.0% | |
| TGAAGTGTAGGCATGGGTGA+TGG | + | 57429:19791-19810 | MS.gene34847:intron | 50.0% | |
| TGCTATGGGAGCTCCTGATT+GGG | + | 57429:22148-22167 | MS.gene34847:CDS | 50.0% | |
| TGTAGCCGATCCCACTTAGT+GGG | + | 57429:19715-19734 | MS.gene34847:intron | 50.0% | |
| TTGCTATGGGAGCTCCTGAT+TGG | + | 57429:22147-22166 | MS.gene34847:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | 57429:19729-19748 | MS.gene34847:intergenic | 50.0% |
| !! | GGTTGGGTTGGGTAGTTCAT+AGG | + | 57429:19508-19527 | MS.gene34847:intron | 50.0% |
| AAACTATTGGGTGGGGGGGA+TGG | + | 57429:19472-19491 | MS.gene34847:intron | 55.0% | |
| AACTATTGGGTGGGGGGGAT+GGG | + | 57429:19473-19492 | MS.gene34847:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | 57429:21381-21400 | MS.gene34847:intron | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | 57429:21477-21496 | MS.gene34847:intergenic | 55.0% | |
| CATATGCAGGGTCTGGGAAG+GGG | - | 57429:21464-21483 | MS.gene34847:intergenic | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | 57429:21476-21495 | MS.gene34847:intergenic | 55.0% | |
| CTCTCAATCCGACCTCCTCT+TGG | - | 57429:19416-19435 | MS.gene34847:intergenic | 55.0% | |
| CTTCCCAGACCCTGCATATG+CGG | + | 57429:21464-21483 | MS.gene34847:intron | 55.0% | |
| GCATATGCAGGGTCTGGGAA+GGG | - | 57429:21465-21484 | MS.gene34847:intergenic | 55.0% | |
| GCTCACCTTTGTAGTGACCC+TGG | + | 57429:20842-20861 | MS.gene34847:CDS | 55.0% | |
| GTAATTGGTCCTCCTGGCTC+TGG | + | 57429:18913-18932 | MS.gene34847:CDS | 55.0% | |
| TTCCCAGACCCTGCATATGC+GGG | + | 57429:21465-21484 | MS.gene34847:intron | 55.0% | |
| !! | GTTGTTTTGCCAGAGCCAGG+AGG | - | 57429:18925-18944 | MS.gene34847:intergenic | 55.0% |
| ACTATTGGGTGGGGGGGATG+GGG | + | 57429:19474-19493 | MS.gene34847:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | 57429:21335-21354 | MS.gene34847:intron | 60.0% | |
| CGCATATGCAGGGTCTGGGA+AGG | - | 57429:21466-21485 | MS.gene34847:intergenic | 60.0% | |
| CTCCCGCATATGCAGGGTCT+GGG | - | 57429:21470-21489 | MS.gene34847:intergenic | 60.0% | |
| TGGGAAGGGGTCCCACCATT+TGG | - | 57429:21451-21470 | MS.gene34847:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | 57429:21481-21500 | MS.gene34847:intron | 60.0% |
| GCTCCCGCATATGCAGGGTC+TGG | - | 57429:21471-21490 | MS.gene34847:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | 57429:21482-21501 | MS.gene34847:intron | 65.0% |
| ATTGGGTGGGGGGGATGGGG+TGG | + | 57429:19477-19496 | MS.gene34847:intron | 70.0% | |
| TGGGGTGGGGGGGTTGGGTT+GGG | + | 57429:19497-19516 | MS.gene34847:intron | 70.0% | |
| TTGGGTGGGGGGGATGGGGT+GGG | + | 57429:19478-19497 | MS.gene34847:intron | 70.0% | |
| ATGGGGTGGGGTGGGGGGGT+TGG | + | 57429:19491-19510 | MS.gene34847:intron | 75.0% | |
| GTGGGGTGGGGGGGTTGGGT+TGG | + | 57429:19496-19515 | MS.gene34847:intron | 75.0% | |
| TGGGGGGGATGGGGTGGGGT+GGG | + | 57429:19483-19502 | MS.gene34847:intron | 75.0% | |
| TGGGGTGGGGTGGGGGGGTT+GGG | + | 57429:19492-19511 | MS.gene34847:intron | 75.0% | |
| TGGGTGGGGGGGATGGGGTG+GGG | + | 57429:19479-19498 | MS.gene34847:intron | 75.0% | |
| ! | GGGGATGGGGTGGGGTGGGG+GGG | + | 57429:19487-19506 | MS.gene34847:intron | 80.0% |
| ! | GGGGGATGGGGTGGGGTGGG+GGG | + | 57429:19486-19505 | MS.gene34847:intron | 80.0% |
| ! | GGGGGGATGGGGTGGGGTGG+GGG | + | 57429:19485-19504 | MS.gene34847:intron | 80.0% |
| ! | GGGGGGGATGGGGTGGGGTG+GGG | + | 57429:19484-19503 | MS.gene34847:intron | 80.0% |
| ! | GTGGGGGGGATGGGGTGGGG+TGG | + | 57429:19482-19501 | MS.gene34847:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57429 | gene | 18895 | 22201 | 18895 | ID=MS.gene34847 |
| 57429 | mRNA | 18895 | 22201 | 18895 | ID=MS.gene34847.t1;Parent=MS.gene34847 |
| 57429 | exon | 18895 | 18986 | 18895 | ID=MS.gene34847.t1.exon1;Parent=MS.gene34847.t1 |
| 57429 | CDS | 18895 | 18986 | 18895 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 19106 | 19150 | 19106 | ID=MS.gene34847.t1.exon2;Parent=MS.gene34847.t1 |
| 57429 | CDS | 19106 | 19150 | 19106 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 19262 | 19341 | 19262 | ID=MS.gene34847.t1.exon3;Parent=MS.gene34847.t1 |
| 57429 | CDS | 19262 | 19341 | 19262 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 20435 | 20509 | 20435 | ID=MS.gene34847.t1.exon4;Parent=MS.gene34847.t1 |
| 57429 | CDS | 20435 | 20509 | 20435 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 20639 | 20742 | 20639 | ID=MS.gene34847.t1.exon5;Parent=MS.gene34847.t1 |
| 57429 | CDS | 20639 | 20742 | 20639 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 20818 | 20974 | 20818 | ID=MS.gene34847.t1.exon6;Parent=MS.gene34847.t1 |
| 57429 | CDS | 20818 | 20974 | 20818 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 21077 | 21164 | 21077 | ID=MS.gene34847.t1.exon7;Parent=MS.gene34847.t1 |
| 57429 | CDS | 21077 | 21164 | 21077 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 21896 | 21968 | 21896 | ID=MS.gene34847.t1.exon8;Parent=MS.gene34847.t1 |
| 57429 | CDS | 21896 | 21968 | 21896 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| 57429 | exon | 22050 | 22201 | 22050 | ID=MS.gene34847.t1.exon9;Parent=MS.gene34847.t1 |
| 57429 | CDS | 22050 | 22201 | 22050 | ID=cds.MS.gene34847.t1;Parent=MS.gene34847.t1 |
| Gene Sequence |
| Protein sequence |
