Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34931.t1 | RHN42374.1 | 96.8 | 443 | 11 | 1 | 27 | 466 | 26 | 468 | 3.30E-228 | 800.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34931.t1 | Q9C918 | 52.3 | 304 | 140 | 3 | 141 | 443 | 8 | 307 | 1.2e-88 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34931.t1 | A0A396GS89 | 96.8 | 443 | 11 | 1 | 27 | 466 | 26 | 468 | 2.4e-228 | 800.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050119 | MS.gene34931 | 0.906237 | 1.84E-80 | -1.69E-46 |
| MS.gene052190 | MS.gene34931 | 0.801787 | 7.64E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene34931 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene34931 | 0.816479 | 5.42E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene34931 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene34931 | 0.812939 | 3.29E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene34931 | 0.806759 | 7.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34931.t1 | MTR_0332s0040 | 90.809 | 272 | 21 | 2 | 195 | 466 | 165 | 432 | 1.58e-180 | 512 |
| MS.gene34931.t1 | MTR_1g092460 | 55.556 | 306 | 128 | 3 | 146 | 451 | 134 | 431 | 4.35e-116 | 348 |
| MS.gene34931.t1 | MTR_0274s0030 | 52.649 | 302 | 133 | 3 | 146 | 447 | 71 | 362 | 1.76e-110 | 331 |
| MS.gene34931.t1 | MTR_8g060700 | 53.145 | 318 | 144 | 3 | 121 | 438 | 435 | 747 | 8.19e-107 | 334 |
| MS.gene34931.t1 | MTR_2g079270 | 49.425 | 348 | 144 | 7 | 115 | 439 | 215 | 553 | 8.04e-105 | 325 |
| MS.gene34931.t1 | MTR_7g023760 | 50.530 | 283 | 123 | 3 | 145 | 427 | 47 | 312 | 7.98e-91 | 279 |
| MS.gene34931.t1 | MTR_4g088835 | 57.576 | 231 | 97 | 1 | 158 | 387 | 638 | 868 | 1.64e-90 | 295 |
| MS.gene34931.t1 | MTR_2g013650 | 49.470 | 283 | 127 | 3 | 158 | 436 | 649 | 919 | 4.57e-90 | 293 |
| MS.gene34931.t1 | MTR_1g112730 | 50.179 | 279 | 132 | 4 | 159 | 437 | 828 | 1099 | 1.74e-88 | 292 |
| MS.gene34931.t1 | MTR_1g092440 | 43.787 | 338 | 137 | 4 | 146 | 436 | 293 | 624 | 6.47e-88 | 281 |
| MS.gene34931.t1 | MTR_8g060700 | 58.475 | 236 | 95 | 2 | 121 | 356 | 435 | 667 | 1.09e-85 | 276 |
| MS.gene34931.t1 | MTR_8g060700 | 58.475 | 236 | 95 | 2 | 121 | 356 | 435 | 667 | 2.55e-85 | 276 |
| MS.gene34931.t1 | MTR_1g092465 | 48.421 | 285 | 114 | 4 | 103 | 384 | 175 | 429 | 3.16e-84 | 266 |
| MS.gene34931.t1 | MTR_4g020620 | 54.741 | 232 | 97 | 1 | 158 | 389 | 604 | 827 | 1.38e-83 | 275 |
| MS.gene34931.t1 | MTR_7g047570 | 47.842 | 278 | 136 | 5 | 161 | 431 | 7 | 282 | 3.65e-81 | 254 |
| MS.gene34931.t1 | MTR_7g451770 | 47.842 | 278 | 136 | 5 | 161 | 431 | 7 | 282 | 3.65e-81 | 254 |
| MS.gene34931.t1 | MTR_2g018540 | 51.037 | 241 | 93 | 4 | 150 | 387 | 87 | 305 | 3.73e-78 | 247 |
| MS.gene34931.t1 | MTR_7g451800 | 46.570 | 277 | 139 | 5 | 162 | 431 | 8 | 282 | 1.56e-76 | 243 |
| MS.gene34931.t1 | MTR_7g047620 | 46.570 | 277 | 139 | 5 | 162 | 431 | 8 | 282 | 1.56e-76 | 243 |
| MS.gene34931.t1 | MTR_4g020620 | 56.281 | 199 | 79 | 1 | 158 | 356 | 546 | 736 | 1.08e-72 | 244 |
| MS.gene34931.t1 | MTR_4g007210 | 41.346 | 312 | 162 | 5 | 134 | 436 | 26 | 325 | 1.91e-72 | 234 |
| MS.gene34931.t1 | MTR_2g079280 | 45.600 | 250 | 106 | 3 | 146 | 395 | 81 | 300 | 2.60e-68 | 221 |
| MS.gene34931.t1 | MTR_4g086440 | 53.886 | 193 | 88 | 1 | 191 | 383 | 37 | 228 | 3.83e-68 | 220 |
| MS.gene34931.t1 | MTR_1g092490 | 52.709 | 203 | 93 | 2 | 236 | 437 | 55 | 255 | 1.97e-65 | 212 |
| MS.gene34931.t1 | MTR_8g071040 | 30.894 | 123 | 75 | 3 | 190 | 312 | 3 | 115 | 4.68e-11 | 61.2 |
| MS.gene34931.t1 | MTR_1g021150 | 29.787 | 141 | 88 | 4 | 190 | 329 | 3 | 133 | 4.77e-11 | 61.2 |
| MS.gene34931.t1 | MTR_7g116940 | 30.233 | 129 | 75 | 3 | 190 | 312 | 3 | 122 | 6.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34931.t1 | AT1G53025 | 52.632 | 304 | 137 | 3 | 143 | 443 | 225 | 524 | 3.90e-109 | 333 |
| MS.gene34931.t1 | AT1G53025 | 52.632 | 304 | 137 | 3 | 143 | 443 | 225 | 524 | 6.91e-109 | 333 |
| MS.gene34931.t1 | AT3G15355 | 55.682 | 264 | 113 | 2 | 159 | 422 | 305 | 564 | 7.28e-101 | 314 |
| MS.gene34931.t1 | AT1G53023 | 50.836 | 299 | 124 | 4 | 143 | 431 | 2 | 287 | 2.20e-99 | 301 |
| MS.gene34931.t1 | AT2G16920 | 42.659 | 361 | 191 | 7 | 84 | 437 | 746 | 1097 | 6.34e-88 | 291 |
| MS.gene34931.t1 | AT2G16920 | 42.659 | 361 | 191 | 7 | 84 | 437 | 746 | 1097 | 6.34e-88 | 291 |
| MS.gene34931.t1 | AT2G33770 | 48.410 | 283 | 138 | 2 | 158 | 440 | 632 | 906 | 1.84e-86 | 284 |
| MS.gene34931.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene34931.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene34931.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene34931.t1 | AT5G05080 | 32.812 | 128 | 74 | 4 | 186 | 313 | 8 | 123 | 1.56e-12 | 67.8 |
| MS.gene34931.t1 | AT5G41700 | 30.872 | 149 | 91 | 5 | 190 | 336 | 3 | 141 | 8.67e-12 | 63.5 |
| MS.gene34931.t1 | AT3G08690 | 30.556 | 144 | 89 | 4 | 190 | 332 | 3 | 136 | 4.28e-11 | 61.2 |
| MS.gene34931.t1 | AT3G08690 | 30.556 | 144 | 89 | 4 | 190 | 332 | 3 | 136 | 4.28e-11 | 61.2 |
Find 101 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTAGGATGGAGCTTATT+AGG | 0.145484 | 4.1:-16553339 | MS.gene34931:CDS |
| TTTCCATTATTATATAAATT+TGG | 0.177130 | 4.1:+16553108 | None:intergenic |
| TGTAGCATGGTTGATTTATC+TGG | 0.257661 | 4.1:+16553030 | None:intergenic |
| CTTCTGTTGCCAGGATGCTT+TGG | 0.314493 | 4.1:-16554383 | MS.gene34931:intron |
| AATCCAAATTTATATAATAA+TGG | 0.333342 | 4.1:-16553111 | MS.gene34931:CDS |
| CTTGACGACGACGCCAGAAT+TGG | 0.336149 | 4.1:+16555447 | None:intergenic |
| AAAGTATGCCTTAGTCTCTT+AGG | 0.344468 | 4.1:-16553087 | MS.gene34931:CDS |
| TTTCGAACTGGACTCTGAAT+TGG | 0.355051 | 4.1:+16554042 | None:intergenic |
| CAGCCTGGGACCTTCACACC+TGG | 0.359549 | 4.1:+16551124 | None:intergenic |
| GACAATGTGGATTTGCCTCC+GGG | 0.372987 | 4.1:-16554124 | MS.gene34931:CDS |
| TGCCAGGATGCTTTGGTCCC+TGG | 0.386858 | 4.1:-16554376 | MS.gene34931:intron |
| TTGCGGGACACTTCCGCCTA+AGG | 0.390892 | 4.1:-16551431 | MS.gene34931:CDS |
| TGTATACATCATTGTCTTCA+AGG | 0.393420 | 4.1:+16552873 | None:intergenic |
| ACTAGCATTACGACTACTTT+GGG | 0.394996 | 4.1:+16551335 | None:intergenic |
| TGCTGCTGCTACTGCTAACT+TGG | 0.399297 | 4.1:-16551178 | MS.gene34931:CDS |
| TGTATTATCATTGTAATCCT+TGG | 0.400389 | 4.1:+16552906 | None:intergenic |
| GGAACTGCAGGGTACTTTGC+AGG | 0.401038 | 4.1:+16553250 | None:intergenic |
| CACTAGCATTACGACTACTT+TGG | 0.405676 | 4.1:+16551334 | None:intergenic |
| ATGGTAAGAACTGCGAAAAC+TGG | 0.416419 | 4.1:-16553056 | MS.gene34931:CDS |
| ATCTACTTCAGCTTTCGAAC+TGG | 0.417449 | 4.1:+16554030 | None:intergenic |
| ATCTTATCATAATGATGATC+AGG | 0.419705 | 4.1:+16553941 | None:intergenic |
| ATCTAGGATGGAGCTTATTA+GGG | 0.420392 | 4.1:-16553338 | MS.gene34931:CDS |
| TCAATGTCACTGAATTCAAT+TGG | 0.421474 | 4.1:-16554289 | MS.gene34931:CDS |
| AATTTCAGGCAGCTGTGAAT+AGG | 0.427761 | 4.1:-16551290 | MS.gene34931:CDS |
| TTGACGACGACGCCAGAATT+GGG | 0.428770 | 4.1:+16555448 | None:intergenic |
| ATCAACCATGCTACAAGTCT+TGG | 0.437396 | 4.1:-16553022 | MS.gene34931:CDS |
| ATGCAGTCATGCAAAAGTTT+CGG | 0.439516 | 4.1:-16553997 | MS.gene34931:CDS |
| GATCATCATTATGATAAGAT+AGG | 0.441368 | 4.1:-16553938 | MS.gene34931:CDS |
| TGACAATGTGGATTTGCCTC+CGG | 0.442691 | 4.1:-16554125 | MS.gene34931:CDS |
| TCTTACAGCGACCAAAGAAC+TGG | 0.445315 | 4.1:-16553799 | MS.gene34931:intron |
| TTGTGAGAGTTTGTGAATCT+AGG | 0.448277 | 4.1:-16553354 | MS.gene34931:CDS |
| TCAGTATGTTCCTCGCCCTT+AGG | 0.453082 | 4.1:+16551415 | None:intergenic |
| TTATGTAAAACTTCTCCAAC+TGG | 0.453968 | 4.1:+16551363 | None:intergenic |
| AGCATCAGTGCCTTGGTTGA+AGG | 0.462539 | 4.1:-16554095 | MS.gene34931:CDS |
| ACGAAAACAAGAGGAAGAGC+AGG | 0.482338 | 4.1:-16555422 | MS.gene34931:intron |
| CTCATAGAATTTCCATGACC+AGG | 0.487258 | 4.1:+16554358 | None:intergenic |
| GGAGTTATATTATAAATCTC+AGG | 0.487573 | 4.1:+16551201 | None:intergenic |
| ATGAGTGTCGGAGAATCATC+TGG | 0.492477 | 4.1:-16554340 | MS.gene34931:CDS |
| TAATAGTCAGAGCCATCGTC+AGG | 0.495284 | 4.1:+16554199 | None:intergenic |
| GCTGTCATCGTTGGACCTCT+AGG | 0.497159 | 4.1:-16553316 | MS.gene34931:CDS |
| GATGCTTTGGTCCCTGGTCA+TGG | 0.499453 | 4.1:-16554370 | MS.gene34931:CDS |
| CTTATTAGGGCTGTCATCGT+TGG | 0.504437 | 4.1:-16553325 | MS.gene34931:CDS |
| CGATATGACTCAGCATATCC+AGG | 0.506421 | 4.1:+16552952 | None:intergenic |
| GACACTTCCGCCTAAGGGCG+AGG | 0.508128 | 4.1:-16551425 | MS.gene34931:CDS |
| ATACATACCGGTGGAACTGC+AGG | 0.508289 | 4.1:+16553238 | None:intergenic |
| CCCGCAACAAAGTCCTCAAA+AGG | 0.519018 | 4.1:+16551447 | None:intergenic |
| TCGAAATTCTTCGCAGTCTG+TGG | 0.527632 | 4.1:+16551227 | None:intergenic |
| AGCCTGGGACCTTCACACCT+GGG | 0.528732 | 4.1:+16551125 | None:intergenic |
| GGCACTGATGCTTCTACCCC+CGG | 0.533051 | 4.1:+16554106 | None:intergenic |
| AAGTTAGCAGTAGCAGCAGC+AGG | 0.536604 | 4.1:+16551180 | None:intergenic |
| GCCACGTACCTAAGAGACTA+AGG | 0.539509 | 4.1:+16553079 | None:intergenic |
| TGCTTCAGCCGCAGAGACAC+AGG | 0.549616 | 4.1:-16553915 | MS.gene34931:intron |
| TGCGGGACACTTCCGCCTAA+GGG | 0.551421 | 4.1:-16551430 | MS.gene34931:CDS |
| TTCATTTCACAACGATGATG+AGG | 0.553115 | 4.1:-16554251 | MS.gene34931:CDS |
| ATCGTGCTGATGAGGGGCAA+AGG | 0.554509 | 4.1:-16552933 | MS.gene34931:CDS |
| TACACTGCGTAAACCACCTA+AGG | 0.559413 | 4.1:-16552854 | MS.gene34931:intron |
| GAAGAAAAGACCGTCATGGT+AGG | 0.560934 | 4.1:+16553288 | None:intergenic |
| GGGTAGAAGCATCAGTGCCT+TGG | 0.561597 | 4.1:-16554102 | MS.gene34931:CDS |
| CAGCAAGTTTACTACCACTC+AGG | 0.569662 | 4.1:-16553147 | MS.gene34931:CDS |
| AAGAAAAGACCGTCATGGTA+GGG | 0.570573 | 4.1:+16553289 | None:intergenic |
| TGACGACGACGCCAGAATTG+GGG | 0.572784 | 4.1:+16555449 | None:intergenic |
| ACTACCACTCAGGTGGCTTG+AGG | 0.574664 | 4.1:-16553137 | MS.gene34931:CDS |
| AAAGTACCCTGCAGTTCCAC+CGG | 0.575597 | 4.1:-16553245 | MS.gene34931:intron |
| GTCGGAGAATCATCTGGTAG+TGG | 0.576524 | 4.1:-16554334 | MS.gene34931:CDS |
| CATTCGACATCCTTCAACCA+AGG | 0.582609 | 4.1:+16554085 | None:intergenic |
| GAGTCATATCGTGCTGATGA+GGG | 0.583830 | 4.1:-16552940 | MS.gene34931:CDS |
| TTTATGGGACGAACCTTAGG+TGG | 0.584837 | 4.1:+16552841 | None:intergenic |
| GTATGTTCCTCGCCCTTAGG+CGG | 0.590897 | 4.1:+16551418 | None:intergenic |
| GATGTCGAATGCAAGCCGGC+TGG | 0.593939 | 4.1:-16554073 | MS.gene34931:CDS |
| GCAGGATCAATTTGACAATG+TGG | 0.594867 | 4.1:-16554137 | MS.gene34931:CDS |
| GAGAGTTTGTGAATCTAGGA+TGG | 0.598904 | 4.1:-16553350 | MS.gene34931:CDS |
| TTGTAGATCATATGCTGAGG+GGG | 0.600786 | 4.1:-16551388 | MS.gene34931:CDS |
| GAAGGATGTCGAATGCAAGC+CGG | 0.603924 | 4.1:-16554077 | MS.gene34931:CDS |
| CAATGTGGATTTGCCTCCGG+GGG | 0.605131 | 4.1:-16554122 | MS.gene34931:CDS |
| GCTTGTAGATCATATGCTGA+GGG | 0.605567 | 4.1:-16551390 | MS.gene34931:CDS |
| CATGGAAATTCTATGAGTGT+CGG | 0.608315 | 4.1:-16554352 | MS.gene34931:CDS |
| CGTCAAGAAACGAAAACAAG+AGG | 0.608319 | 4.1:-16555431 | MS.gene34931:CDS |
| AGCTTGTAGATCATATGCTG+AGG | 0.609426 | 4.1:-16551391 | MS.gene34931:CDS |
| ACAACATAACCCAGGTGTGA+AGG | 0.612629 | 4.1:-16551134 | None:intergenic |
| GACGACGACGCCAGAATTGG+GGG | 0.621069 | 4.1:+16555450 | None:intergenic |
| CAAAGAAGAAAAGACCGTCA+TGG | 0.627963 | 4.1:+16553284 | None:intergenic |
| TGAGGGGCAAAGGAGATCCA+AGG | 0.628352 | 4.1:-16552923 | MS.gene34931:CDS |
| AGTCATATCGTGCTGATGAG+GGG | 0.629146 | 4.1:-16552939 | MS.gene34931:CDS |
| CAAGTTTACTACCACTCAGG+TGG | 0.636743 | 4.1:-16553144 | MS.gene34931:CDS |
| AGTCTCTTAGGTACGTGGCA+TGG | 0.640884 | 4.1:-16553075 | MS.gene34931:CDS |
| AGAAACCAAGACTTGTAGCA+TGG | 0.645266 | 4.1:+16553017 | None:intergenic |
| CTAGGCACTCCCTACCATGA+CGG | 0.653137 | 4.1:-16553298 | MS.gene34931:CDS |
| TACATACCGGTGGAACTGCA+GGG | 0.654447 | 4.1:+16553239 | None:intergenic |
| ACAATGTGGATTTGCCTCCG+GGG | 0.658182 | 4.1:-16554123 | MS.gene34931:CDS |
| GCCTTAGTCTCTTAGGTACG+TGG | 0.660014 | 4.1:-16553080 | MS.gene34931:CDS |
| TGAGTCATATCGTGCTGATG+AGG | 0.660537 | 4.1:-16552941 | MS.gene34931:CDS |
| TCATAGAATTTCCATGACCA+GGG | 0.666561 | 4.1:+16554359 | None:intergenic |
| ATATATCACCTGTGTCTCTG+CGG | 0.668995 | 4.1:+16553907 | None:intergenic |
| CTCTGACTATTACGACGATG+AGG | 0.674543 | 4.1:-16554188 | MS.gene34931:CDS |
| TCATGGTAGGGAGTGCCTAG+AGG | 0.675357 | 4.1:+16553301 | None:intergenic |
| TGTAGATCATATGCTGAGGG+GGG | 0.684377 | 4.1:-16551387 | MS.gene34931:CDS |
| GCACTTGAAGATCCTGACGA+TGG | 0.700157 | 4.1:-16554211 | MS.gene34931:CDS |
| AGAGAACAACAACATAACCC+AGG | 0.704469 | 4.1:-16551142 | MS.gene34931:CDS |
| CTTGTAGATCATATGCTGAG+GGG | 0.711409 | 4.1:-16551389 | MS.gene34931:CDS |
| GAATTGGCATGAGAACCAGC+CGG | 0.715276 | 4.1:+16554058 | None:intergenic |
| TTAGCCTCAAGCCACCTGAG+TGG | 0.718697 | 4.1:+16553133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCCAAATTTATATAATAA+TGG | - | chr4.1:16553501-16553520 | MS.gene34931:intron | 10.0% |
| !! | CATATTAGTAATATTAATTA+GGG | - | chr4.1:16554270-16554289 | MS.gene34931:CDS | 10.0% |
| !! | GAACTTATAAATTAATATAA+AGG | + | chr4.1:16553900-16553919 | None:intergenic | 10.0% |
| !! | GTAATTGATTATAAATATTA+TGG | + | chr4.1:16554456-16554475 | None:intergenic | 10.0% |
| !! | TTAACATATATTAAGAAAAT+TGG | - | chr4.1:16554154-16554173 | MS.gene34931:CDS | 10.0% |
| !! | TTTCCATTATTATATAAATT+TGG | + | chr4.1:16553507-16553526 | None:intergenic | 10.0% |
| !! | AAAAATAAAAATGATACTGA+GGG | + | chr4.1:16554044-16554063 | None:intergenic | 15.0% |
| !! | AAAATAAAAATAAAAGGCAA+AGG | + | chr4.1:16553009-16553028 | None:intergenic | 15.0% |
| !! | ACTAAATTACCAAAATAATA+AGG | + | chr4.1:16553169-16553188 | None:intergenic | 15.0% |
| !! | GCATATTAGTAATATTAATT+AGG | - | chr4.1:16554269-16554288 | MS.gene34931:CDS | 15.0% |
| !! | TAAAAATAAAAATGATACTG+AGG | + | chr4.1:16554045-16554064 | None:intergenic | 15.0% |
| !! | TTAATACATCTATACATAAA+GGG | + | chr4.1:16554226-16554245 | None:intergenic | 15.0% |
| !! | TTTAATACATCTATACATAA+AGG | + | chr4.1:16554227-16554246 | None:intergenic | 15.0% |
| !!! | AGAACTAAATATTGTTTTAT+GGG | + | chr4.1:16553789-16553808 | None:intergenic | 15.0% |
| !!! | AGTTTTGTTTTAATAGTTTA+AGG | - | chr4.1:16553815-16553834 | MS.gene34931:intron | 15.0% |
| !!! | ATAATGAATCGTTTTTTAAA+TGG | - | chr4.1:16551828-16551847 | MS.gene34931:intron | 15.0% |
| !!! | ATTAATAATTGAAGCAATTT+TGG | + | chr4.1:16554907-16554926 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAGTTTTGTCAA+TGG | - | chr4.1:16553024-16553043 | MS.gene34931:CDS | 15.0% |
| !!! | GTTTTGTTTTAATAGTTTAA+GGG | - | chr4.1:16553816-16553835 | MS.gene34931:intron | 15.0% |
| !!! | TAAATTTATGCTGATTTATT+GGG | - | chr4.1:16552057-16552076 | MS.gene34931:intron | 15.0% |
| !!! | TACATTCTTAAAAATACTTT+TGG | - | chr4.1:16553059-16553078 | MS.gene34931:CDS | 15.0% |
| !! | AATTAATTATTTCAGACTCT+AGG | - | chr4.1:16555029-16555048 | MS.gene34931:intron | 20.0% |
| !! | ATAAAAAATTACTCTCTTGA+GGG | + | chr4.1:16552912-16552931 | None:intergenic | 20.0% |
| !! | ATTCATTATTCCTAACATAT+AGG | + | chr4.1:16551817-16551836 | None:intergenic | 20.0% |
| !! | ATTTCAAAGTTAGATCATAT+AGG | + | chr4.1:16554873-16554892 | None:intergenic | 20.0% |
| !! | ATTTCAACTTATTCATTGTA+TGG | + | chr4.1:16552095-16552114 | None:intergenic | 20.0% |
| !! | CAATTACTAACATCAAAATT+TGG | - | chr4.1:16554469-16554488 | MS.gene34931:intron | 20.0% |
| !! | TAATTGAAGAAAATAAGCAA+TGG | - | chr4.1:16554833-16554852 | MS.gene34931:intron | 20.0% |
| !! | TATAAAAAATTACTCTCTTG+AGG | + | chr4.1:16552913-16552932 | None:intergenic | 20.0% |
| !! | TCATAATAATTTCAAAAGAG+CGG | + | chr4.1:16551539-16551558 | None:intergenic | 20.0% |
| !! | TTAAATTAAATCATCACTCA+AGG | - | chr4.1:16553088-16553107 | MS.gene34931:CDS | 20.0% |
| !! | TTAATATTACTAATATGCCT+TGG | + | chr4.1:16554267-16554286 | None:intergenic | 20.0% |
| !! | TTATAAATATTATGGCAAGA+TGG | + | chr4.1:16554448-16554467 | None:intergenic | 20.0% |
| !! | TTTCAAAGTTAGATCATATA+GGG | + | chr4.1:16554872-16554891 | None:intergenic | 20.0% |
| !!! | AATGAATAAGTTGAAATATG+TGG | - | chr4.1:16552098-16552117 | MS.gene34931:intron | 20.0% |
| !!! | AATTGGGTTGTTTTTTATTT+CGG | - | chr4.1:16551357-16551376 | MS.gene34931:CDS | 20.0% |
| !!! | ATGAATAAGTTGAAATATGT+GGG | - | chr4.1:16552099-16552118 | MS.gene34931:intron | 20.0% |
| !!! | CAGAACTAAATATTGTTTTA+TGG | + | chr4.1:16553790-16553809 | None:intergenic | 20.0% |
| !!! | CTAAATTTATGCTGATTTAT+TGG | - | chr4.1:16552056-16552075 | MS.gene34931:intron | 20.0% |
| !!! | GAAATTCAACCTTATTATTT+TGG | - | chr4.1:16553157-16553176 | MS.gene34931:intron | 20.0% |
| !!! | TATTGATTTTTTATCTTCCA+AGG | - | chr4.1:16554247-16554266 | MS.gene34931:CDS | 20.0% |
| !!! | TTTCACTATATCATTTTTAC+AGG | + | chr4.1:16554788-16554807 | None:intergenic | 20.0% |
| ! | AAATGAGCTTATAAAAAGAG+AGG | + | chr4.1:16554076-16554095 | None:intergenic | 25.0% |
| ! | AATATAAGTTCGCAATTTGA+AGG | + | chr4.1:16551879-16551898 | None:intergenic | 25.0% |
| ! | AATCATGAAACTGAAATGAA+AGG | + | chr4.1:16551226-16551245 | None:intergenic | 25.0% |
| ! | AATGAGCTTATAAAAAGAGA+GGG | + | chr4.1:16554075-16554094 | None:intergenic | 25.0% |
| ! | AGAAAAAGATATAGTTTACC+TGG | + | chr4.1:16552884-16552903 | None:intergenic | 25.0% |
| ! | AGAAACATATAATCGGATTA+AGG | + | chr4.1:16552796-16552815 | None:intergenic | 25.0% |
| ! | AGATAAAAATATGTGTGTTC+TGG | + | chr4.1:16554990-16555009 | None:intergenic | 25.0% |
| ! | AGCTTATAAAAAGAGATAGA+GGG | + | chr4.1:16554114-16554133 | None:intergenic | 25.0% |
| ! | ATCATGAAACTGAAATGAAA+GGG | + | chr4.1:16551225-16551244 | None:intergenic | 25.0% |
| ! | ATCTGAGAAAGAAAAAAACA+TGG | + | chr4.1:16552965-16552984 | None:intergenic | 25.0% |
| ! | ATCTTATCATAATGATGATC+AGG | + | chr4.1:16552674-16552693 | None:intergenic | 25.0% |
| ! | CCATATACATATTAGGATTT+AGG | - | chr4.1:16554569-16554588 | MS.gene34931:intron | 25.0% |
| ! | CCTAAATCCTAATATGTATA+TGG | + | chr4.1:16554572-16554591 | None:intergenic | 25.0% |
| ! | GATCATCATTATGATAAGAT+AGG | - | chr4.1:16552674-16552693 | MS.gene34931:intron | 25.0% |
| ! | GGAGTTATATTATAAATCTC+AGG | + | chr4.1:16555414-16555433 | None:intergenic | 25.0% |
| ! | TAAAAAATTACTCTCTTGAG+GGG | + | chr4.1:16552911-16552930 | None:intergenic | 25.0% |
| ! | TAAGAACCAAAAAGAATTTC+AGG | - | chr4.1:16555308-16555327 | MS.gene34931:intron | 25.0% |
| ! | TGTATTATCATTGTAATCCT+TGG | + | chr4.1:16553709-16553728 | None:intergenic | 25.0% |
| ! | TTAACTTTATAGCTCATCAA+TGG | - | chr4.1:16551560-16551579 | MS.gene34931:intron | 25.0% |
| ! | TTATCATATTGCTGTAAAAG+TGG | - | chr4.1:16551906-16551925 | MS.gene34931:intron | 25.0% |
| ! | TTTGGTGAAAAATGCAATAA+GGG | + | chr4.1:16555358-16555377 | None:intergenic | 25.0% |
| !! | AATCTAGATTTCATGTTTTC+TGG | - | chr4.1:16555109-16555128 | MS.gene34931:intron | 25.0% |
| !! | ATTGCATTTTTCACCAAAAA+TGG | - | chr4.1:16555360-16555379 | MS.gene34931:intron | 25.0% |
| !! | ATTTCAGTTTCATGATTTTC+TGG | - | chr4.1:16551229-16551248 | MS.gene34931:CDS | 25.0% |
| !! | GTTTTGTGTGCATATAAATA+GGG | - | chr4.1:16554299-16554318 | MS.gene34931:CDS | 25.0% |
| !! | TGTTTTGTGTGCATATAAAT+AGG | - | chr4.1:16554298-16554317 | MS.gene34931:CDS | 25.0% |
| !! | TTTTGGTGAAAAATGCAATA+AGG | + | chr4.1:16555359-16555378 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGTCCAGTTCTT+TGG | + | chr4.1:16552827-16552846 | None:intergenic | 25.0% |
| !!! | GAACACACATATTTTTATCT+AGG | - | chr4.1:16554990-16555009 | MS.gene34931:intron | 25.0% |
| !!! | GTTGTTTTACCTCTATAAAT+TGG | - | chr4.1:16554406-16554425 | MS.gene34931:intron | 25.0% |
| !!! | TTCATGATTTTCTGGTTTTA+TGG | - | chr4.1:16551237-16551256 | MS.gene34931:CDS | 25.0% |
| !!! | TTTGTCTTTTTTGACGAATT+GGG | - | chr4.1:16551341-16551360 | MS.gene34931:CDS | 25.0% |
| !!! | TTTTGTCTTTTTTGACGAAT+TGG | - | chr4.1:16551340-16551359 | MS.gene34931:CDS | 25.0% |
| AAAAAATTACTCTCTTGAGG+GGG | + | chr4.1:16552910-16552929 | None:intergenic | 30.0% | |
| AAAATAAGCCTAAACCAAAC+AGG | - | chr4.1:16554018-16554037 | MS.gene34931:CDS | 30.0% | |
| AAACACGCCATATACATATT+AGG | - | chr4.1:16554562-16554581 | MS.gene34931:intron | 30.0% | |
| AAGACACATCTTAAAACAAG+TGG | + | chr4.1:16553410-16553429 | None:intergenic | 30.0% | |
| ACAACAGAAAATGAGAAAAC+TGG | + | chr4.1:16554391-16554410 | None:intergenic | 30.0% | |
| ACGAACCCTAGTATTTAATT+TGG | + | chr4.1:16551511-16551530 | None:intergenic | 30.0% | |
| AGCTGCCAAATTAAATACTA+GGG | - | chr4.1:16551503-16551522 | MS.gene34931:intron | 30.0% | |
| ATAATAAGCCTAATCCAAAC+GGG | + | chr4.1:16553842-16553861 | None:intergenic | 30.0% | |
| ATTACGATTCCTGAATTTCA+TGG | - | chr4.1:16554340-16554359 | MS.gene34931:CDS | 30.0% | |
| CATAATAAGCCTAATCCAAA+CGG | + | chr4.1:16553843-16553862 | None:intergenic | 30.0% | |
| CGCTGTAAGAAACATATAAT+CGG | + | chr4.1:16552803-16552822 | None:intergenic | 30.0% | |
| CTGCTCATCTATCATTATAA+TGG | + | chr4.1:16554525-16554544 | None:intergenic | 30.0% | |
| GAGCTTATAAAAAGAGATAG+AGG | + | chr4.1:16554115-16554134 | None:intergenic | 30.0% | |
| GGAACATTAATGATACATAC+CGG | + | chr4.1:16553389-16553408 | None:intergenic | 30.0% | |
| GTAACTGTCAAAATCCATTA+AGG | - | chr4.1:16554954-16554973 | MS.gene34931:intron | 30.0% | |
| TATAACCCTAAAACGTGAAA+TGG | + | chr4.1:16551401-16551420 | None:intergenic | 30.0% | |
| TATCCAGGCTCATTAAAAAA+AGG | + | chr4.1:16553648-16553667 | None:intergenic | 30.0% | |
| TCAATGTCACTGAATTCAAT+TGG | - | chr4.1:16552323-16552342 | MS.gene34931:intron | 30.0% | |
| TGACGACAATAGTAAAAGTT+TGG | + | chr4.1:16553128-16553147 | None:intergenic | 30.0% | |
| TGTATACATCATTGTCTTCA+AGG | + | chr4.1:16553742-16553761 | None:intergenic | 30.0% | |
| TTAAGGTCATGTTAAGCATA+TGG | + | chr4.1:16552176-16552195 | None:intergenic | 30.0% | |
| TTATAATGATAGATGAGCAG+AGG | - | chr4.1:16554525-16554544 | MS.gene34931:intron | 30.0% | |
| TTATGTAAAACTTCTCCAAC+TGG | + | chr4.1:16555252-16555271 | None:intergenic | 30.0% | |
| TTTACCTCTATAAATTGGAC+TGG | - | chr4.1:16554411-16554430 | MS.gene34931:intron | 30.0% | |
| ! | TCCGTAAAAACATTTTCAAC+AGG | + | chr4.1:16551589-16551608 | None:intergenic | 30.0% |
| ! | TCTCACAAAGATTTTATCTG+TGG | + | chr4.1:16553246-16553265 | None:intergenic | 30.0% |
| !! | AGATGAATACTCATTTTTGC+AGG | - | chr4.1:16552457-16552476 | MS.gene34931:intron | 30.0% |
| !! | ATGCTGATTTATTGGGAAAA+TGG | - | chr4.1:16552064-16552083 | MS.gene34931:intron | 30.0% |
| !! | ATTTGCCATTTCACGTTTTA+GGG | - | chr4.1:16551393-16551412 | MS.gene34931:CDS | 30.0% |
| !! | ATTTTAGAGGAAAATTTGCC+AGG | - | chr4.1:16552863-16552882 | MS.gene34931:CDS | 30.0% |
| !! | CACACATATTTTTATCTAGG+AGG | - | chr4.1:16554993-16555012 | MS.gene34931:intron | 30.0% |
| !! | GCCTGTTGAAAATGTTTTTA+CGG | - | chr4.1:16551585-16551604 | MS.gene34931:intron | 30.0% |
| !! | TGCTGATTTATTGGGAAAAT+GGG | - | chr4.1:16552065-16552084 | MS.gene34931:intron | 30.0% |
| !! | TTAGTTTGCAACAGAATAGT+TGG | - | chr4.1:16551434-16551453 | MS.gene34931:CDS | 30.0% |
| !!! | GTTAACATGATTTTTTGTGC+AGG | - | chr4.1:16552144-16552163 | MS.gene34931:intron | 30.0% |
| AAAAATTACTCTCTTGAGGG+GGG | + | chr4.1:16552909-16552928 | None:intergenic | 35.0% | |
| AAAGTATGCCTTAGTCTCTT+AGG | - | chr4.1:16553525-16553544 | MS.gene34931:intron | 35.0% | |
| AACATCCCTGTATCTTGAAA+TGG | - | chr4.1:16554623-16554642 | MS.gene34931:intron | 35.0% | |
| AATTTCATGGTTAGGTTAGG+TGG | - | chr4.1:16554353-16554372 | MS.gene34931:CDS | 35.0% | |
| ACATGACCTTAAGCTTTACA+AGG | - | chr4.1:16552184-16552203 | MS.gene34931:intron | 35.0% | |
| ACATTAATGATACATACCGG+TGG | + | chr4.1:16553386-16553405 | None:intergenic | 35.0% | |
| ACTAGCATTACGACTACTTT+GGG | + | chr4.1:16555280-16555299 | None:intergenic | 35.0% | |
| AGAACCAGTCCAATTTATAG+AGG | + | chr4.1:16554418-16554437 | None:intergenic | 35.0% | |
| AGGTAACCATTTCAAGATAC+AGG | + | chr4.1:16554632-16554651 | None:intergenic | 35.0% | |
| ATATGTGTGTTCTGGTACAA+AGG | + | chr4.1:16554982-16555001 | None:intergenic | 35.0% | |
| ATGCAGTCATGCAAAAGTTT+CGG | - | chr4.1:16552615-16552634 | MS.gene34931:intron | 35.0% | |
| CAAAAAAAATCCAGGAGGAA+TGG | - | chr4.1:16552837-16552856 | MS.gene34931:intron | 35.0% | |
| CAAAACCCTTGTAAAGCTTA+AGG | + | chr4.1:16552193-16552212 | None:intergenic | 35.0% | |
| CAGCTGCCAAATTAAATACT+AGG | - | chr4.1:16551502-16551521 | MS.gene34931:intron | 35.0% | |
| CATCTATACATAAAGGGCAA+TGG | + | chr4.1:16554220-16554239 | None:intergenic | 35.0% | |
| CATGACCTTAAGCTTTACAA+GGG | - | chr4.1:16552185-16552204 | MS.gene34931:intron | 35.0% | |
| CATGGAAATTCTATGAGTGT+CGG | - | chr4.1:16552260-16552279 | MS.gene34931:intron | 35.0% | |
| CTAACCTAACCATGAAATTC+AGG | + | chr4.1:16554352-16554371 | None:intergenic | 35.0% | |
| CTGAATTTCATGGTTAGGTT+AGG | - | chr4.1:16554350-16554369 | MS.gene34931:CDS | 35.0% | |
| GAAAAACCACTTGCGTTTAA+GGG | - | chr4.1:16554665-16554684 | MS.gene34931:intron | 35.0% | |
| GAACTGGACAAAAAAAATCC+AGG | - | chr4.1:16552829-16552848 | MS.gene34931:intron | 35.0% | |
| GACATTCACTGATACATACA+CGG | - | chr4.1:16551648-16551667 | MS.gene34931:intron | 35.0% | |
| GATTCCTGAATTTCATGGTT+AGG | - | chr4.1:16554345-16554364 | MS.gene34931:CDS | 35.0% | |
| GGTAACCATTTCAAGATACA+GGG | + | chr4.1:16554631-16554650 | None:intergenic | 35.0% | |
| TAGTAGCCACGTTTGAATTT+AGG | + | chr4.1:16551767-16551786 | None:intergenic | 35.0% | |
| TCATAGAATTTCCATGACCA+GGG | + | chr4.1:16552256-16552275 | None:intergenic | 35.0% | |
| TCCCTAAAAGTTAGCTATCA+GGG | + | chr4.1:16554742-16554761 | None:intergenic | 35.0% | |
| TGAAAAACCACTTGCGTTTA+AGG | - | chr4.1:16554664-16554683 | MS.gene34931:intron | 35.0% | |
| TGCATATAAATAGGGATGGA+GGG | - | chr4.1:16554307-16554326 | MS.gene34931:CDS | 35.0% | |
| TGTGTGCATATAAATAGGGA+TGG | - | chr4.1:16554303-16554322 | MS.gene34931:CDS | 35.0% | |
| TTCATTTCACAACGATGATG+AGG | - | chr4.1:16552361-16552380 | MS.gene34931:intron | 35.0% | |
| TTCCCTAAAAGTTAGCTATC+AGG | + | chr4.1:16554743-16554762 | None:intergenic | 35.0% | |
| TTGTGAGAGTTTGTGAATCT+AGG | - | chr4.1:16553258-16553277 | MS.gene34931:CDS | 35.0% | |
| ! | AATCTAGGATGGAGCTTATT+AGG | - | chr4.1:16553273-16553292 | MS.gene34931:CDS | 35.0% |
| ! | ATCTAGGATGGAGCTTATTA+GGG | - | chr4.1:16553274-16553293 | MS.gene34931:CDS | 35.0% |
| ! | CTAAAATTTTCCATTCCTCC+TGG | + | chr4.1:16552850-16552869 | None:intergenic | 35.0% |
| ! | GCTGATTTATTGGGAAAATG+GGG | - | chr4.1:16552066-16552085 | MS.gene34931:intron | 35.0% |
| ! | GGAGGAATGGAAAATTTTAG+AGG | - | chr4.1:16552850-16552869 | MS.gene34931:intron | 35.0% |
| ! | GTTTTTCACAAACACGTATG+AGG | + | chr4.1:16554652-16554671 | None:intergenic | 35.0% |
| ! | TCATTTTCAATCGTCTTTGC+TGG | - | chr4.1:16553190-16553209 | MS.gene34931:intron | 35.0% |
| ! | TGTAGCATGGTTGATTTATC+TGG | + | chr4.1:16553585-16553604 | None:intergenic | 35.0% |
| !! | CACTTTTTGTGCGTAAAAGA+AGG | + | chr4.1:16552020-16552039 | None:intergenic | 35.0% |
| !! | GATAGCTAACTTTTAGGGAA+GGG | - | chr4.1:16554743-16554762 | MS.gene34931:intron | 35.0% |
| !! | GATTTGCCATTTCACGTTTT+AGG | - | chr4.1:16551392-16551411 | MS.gene34931:CDS | 35.0% |
| !! | TGATAGCTAACTTTTAGGGA+AGG | - | chr4.1:16554742-16554761 | MS.gene34931:intron | 35.0% |
| !!! | AAGCCTTTTTTTAATGAGCC+TGG | - | chr4.1:16553642-16553661 | MS.gene34931:intron | 35.0% |
| AAGAAAAGACCGTCATGGTA+GGG | + | chr4.1:16553326-16553345 | None:intergenic | 40.0% | |
| AATTTCAGGCAGCTGTGAAT+AGG | - | chr4.1:16555322-16555341 | MS.gene34931:intron | 40.0% | |
| AGAAACCAAGACTTGTAGCA+TGG | + | chr4.1:16553598-16553617 | None:intergenic | 40.0% | |
| AGAGAACAACAACATAACCC+AGG | - | chr4.1:16555470-16555489 | MS.gene34931:CDS | 40.0% | |
| AGCTTGTAGATCATATGCTG+AGG | - | chr4.1:16555221-16555240 | MS.gene34931:intron | 40.0% | |
| ATATATCACCTGTGTCTCTG+CGG | + | chr4.1:16552708-16552727 | None:intergenic | 40.0% | |
| ATCAACCATGCTACAAGTCT+TGG | - | chr4.1:16553590-16553609 | MS.gene34931:intron | 40.0% | |
| ATCTACTTCAGCTTTCGAAC+TGG | + | chr4.1:16552585-16552604 | None:intergenic | 40.0% | |
| ATGCAGCATGCCTATATGTT+AGG | - | chr4.1:16551804-16551823 | MS.gene34931:intron | 40.0% | |
| ATGGTAAGAACTGCGAAAAC+TGG | - | chr4.1:16553556-16553575 | MS.gene34931:intron | 40.0% | |
| CAAAGAAGAAAAGACCGTCA+TGG | + | chr4.1:16553331-16553350 | None:intergenic | 40.0% | |
| CACTAGCATTACGACTACTT+TGG | + | chr4.1:16555281-16555300 | None:intergenic | 40.0% | |
| CCCTAAAAGTTAGCTATCAG+GGG | + | chr4.1:16554741-16554760 | None:intergenic | 40.0% | |
| CCTAAAAGTTAGCTATCAGG+GGG | + | chr4.1:16554740-16554759 | None:intergenic | 40.0% | |
| CGTCAAGAAACGAAAACAAG+AGG | - | chr4.1:16551181-16551200 | MS.gene34931:CDS | 40.0% | |
| CGTTTGAATTTAGGTGGCAA+TGG | + | chr4.1:16551758-16551777 | None:intergenic | 40.0% | |
| CTCATAGAATTTCCATGACC+AGG | + | chr4.1:16552257-16552276 | None:intergenic | 40.0% | |
| CTGGACAAAAAAAATCCAGG+AGG | - | chr4.1:16552832-16552851 | MS.gene34931:intron | 40.0% | |
| CTTGTAGATCATATGCTGAG+GGG | - | chr4.1:16555223-16555242 | MS.gene34931:intron | 40.0% | |
| GAGAGTTTGTGAATCTAGGA+TGG | - | chr4.1:16553262-16553281 | MS.gene34931:CDS | 40.0% | |
| GCAGGATCAATTTGACAATG+TGG | - | chr4.1:16552475-16552494 | MS.gene34931:intron | 40.0% | |
| GCTTGTAGATCATATGCTGA+GGG | - | chr4.1:16555222-16555241 | MS.gene34931:intron | 40.0% | |
| GTGCATATAAATAGGGATGG+AGG | - | chr4.1:16554306-16554325 | MS.gene34931:CDS | 40.0% | |
| TAAACTCTCCCTAAGAGTTC+AGG | + | chr4.1:16551935-16551954 | None:intergenic | 40.0% | |
| TAATAGTTTAAGGGCCCGTT+TGG | - | chr4.1:16553825-16553844 | MS.gene34931:intron | 40.0% | |
| TAGCCACGTTTGAATTTAGG+TGG | + | chr4.1:16551764-16551783 | None:intergenic | 40.0% | |
| TTAAATACTAGGGTTCGTCG+TGG | - | chr4.1:16551513-16551532 | MS.gene34931:intron | 40.0% | |
| TTGCCACCTAAATTCAAACG+TGG | - | chr4.1:16551758-16551777 | MS.gene34931:intron | 40.0% | |
| TTGTAGATCATATGCTGAGG+GGG | - | chr4.1:16555224-16555243 | MS.gene34931:intron | 40.0% | |
| TTTACAGGTACCCAAACATG+TGG | + | chr4.1:16554773-16554792 | None:intergenic | 40.0% | |
| TTTCGAACTGGACTCTGAAT+TGG | + | chr4.1:16552573-16552592 | None:intergenic | 40.0% | |
| ! | AAGTGGATTCCTGAACTCTT+AGG | - | chr4.1:16551923-16551942 | MS.gene34931:intron | 40.0% |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4.1:16551709-16551728 | MS.gene34931:intron | 40.0% |
| ! | AGGGATGTTGACTGCATAAA+AGG | + | chr4.1:16554612-16554631 | None:intergenic | 40.0% |
| ! | AGTGGATTCCTGAACTCTTA+GGG | - | chr4.1:16551924-16551943 | MS.gene34931:intron | 40.0% |
| ! | CAGCTGCCTGAAATTCTTTT+TGG | + | chr4.1:16555317-16555336 | None:intergenic | 40.0% |
| ! | CCCCTGATAGCTAACTTTTA+GGG | - | chr4.1:16554738-16554757 | MS.gene34931:intron | 40.0% |
| ! | GGGATGTTGACTGCATAAAA+GGG | + | chr4.1:16554611-16554630 | None:intergenic | 40.0% |
| ! | TGTTTTATGGGACGAACCTT+AGG | + | chr4.1:16553777-16553796 | None:intergenic | 40.0% |
| !! | CATTGACTTGCGTTAGACAT+TGG | - | chr4.1:16551684-16551703 | MS.gene34931:intron | 40.0% |
| !! | CTGGTACAAAGGTACCTTAA+TGG | + | chr4.1:16554971-16554990 | None:intergenic | 40.0% |
| !! | TCTGTTTTTCTTCTGTTGCC+AGG | - | chr4.1:16552220-16552239 | MS.gene34931:intron | 40.0% |
| AAAGTTAGCTATCAGGGGGA+TGG | + | chr4.1:16554736-16554755 | None:intergenic | 45.0% | |
| AAGCATCCCTTAAACGCAAG+TGG | + | chr4.1:16554674-16554693 | None:intergenic | 45.0% | |
| AATGATACTGAGGGCCTGTT+TGG | + | chr4.1:16554035-16554054 | None:intergenic | 45.0% | |
| ACGAAAACAAGAGGAAGAGC+AGG | - | chr4.1:16551190-16551209 | MS.gene34931:CDS | 45.0% | |
| ACGCAAGTCAATGTTGTGAC+TGG | + | chr4.1:16551677-16551696 | None:intergenic | 45.0% | |
| ACTTGCGTTTAAGGGATGCT+TGG | - | chr4.1:16554673-16554692 | MS.gene34931:intron | 45.0% | |
| CAAGTTTACTACCACTCAGG+TGG | - | chr4.1:16553468-16553487 | MS.gene34931:intron | 45.0% | |
| CAGCAAGTTTACTACCACTC+AGG | - | chr4.1:16553465-16553484 | MS.gene34931:intron | 45.0% | |
| CATTCGACATCCTTCAACCA+AGG | + | chr4.1:16552530-16552549 | None:intergenic | 45.0% | |
| CGATATGACTCAGCATATCC+AGG | + | chr4.1:16553663-16553682 | None:intergenic | 45.0% | |
| CTCTGACTATTACGACGATG+AGG | - | chr4.1:16552424-16552443 | MS.gene34931:intron | 45.0% | |
| CTTATTAGGGCTGTCATCGT+TGG | - | chr4.1:16553287-16553306 | MS.gene34931:CDS | 45.0% | |
| GAAGAAAAGACCGTCATGGT+AGG | + | chr4.1:16553327-16553346 | None:intergenic | 45.0% | |
| GAAGGGTTCTCCACATGTTT+GGG | - | chr4.1:16554760-16554779 | MS.gene34931:intron | 45.0% | |
| GGAGAGTTTACTGCCCATTT+GGG | - | chr4.1:16551945-16551964 | MS.gene34931:intron | 45.0% | |
| TAATAGTCAGAGCCATCGTC+AGG | + | chr4.1:16552416-16552435 | None:intergenic | 45.0% | |
| TACACTGCGTAAACCACCTA+AGG | - | chr4.1:16553758-16553777 | MS.gene34931:CDS | 45.0% | |
| TCGAAATTCTTCGCAGTCTG+TGG | + | chr4.1:16555388-16555407 | None:intergenic | 45.0% | |
| TCTTACAGCGACCAAAGAAC+TGG | - | chr4.1:16552813-16552832 | MS.gene34931:intron | 45.0% | |
| TGACAATGTGGATTTGCCTC+CGG | - | chr4.1:16552487-16552506 | MS.gene34931:intron | 45.0% | |
| TGTAGATCATATGCTGAGGG+GGG | - | chr4.1:16555225-16555244 | MS.gene34931:intron | 45.0% | |
| TTTAAGGGCCCGTTTGGATT+AGG | - | chr4.1:16553831-16553850 | MS.gene34931:intron | 45.0% | |
| TTTATGGGACGAACCTTAGG+TGG | + | chr4.1:16553774-16553793 | None:intergenic | 45.0% | |
| ! | AGTCATATCGTGCTGATGAG+GGG | - | chr4.1:16553673-16553692 | MS.gene34931:intron | 45.0% |
| ! | CCCCCTGATAGCTAACTTTT+AGG | - | chr4.1:16554737-16554756 | MS.gene34931:intron | 45.0% |
| ! | CTTTTGCATGACTGCATCTG+TGG | + | chr4.1:16552612-16552631 | None:intergenic | 45.0% |
| ! | GAGTCATATCGTGCTGATGA+GGG | - | chr4.1:16553672-16553691 | MS.gene34931:intron | 45.0% |
| ! | TGAGTCATATCGTGCTGATG+AGG | - | chr4.1:16553671-16553690 | MS.gene34931:intron | 45.0% |
| ! | TTAGTCTTTGCACTTGCGTG+TGG | - | chr4.1:16551988-16552007 | MS.gene34931:intron | 45.0% |
| ! | TTTTACGGACGACGCATACA+CGG | - | chr4.1:16551600-16551619 | MS.gene34931:intron | 45.0% |
| !! | ACCTTCAATCAGAAGTGTCG+GGG | - | chr4.1:16551711-16551730 | MS.gene34931:intron | 45.0% |
| !! | ATGAGTGTCGGAGAATCATC+TGG | - | chr4.1:16552272-16552291 | MS.gene34931:intron | 45.0% |
| !! | CACCTTCAATCAGAAGTGTC+GGG | - | chr4.1:16551710-16551729 | MS.gene34931:intron | 45.0% |
| !! | CCTTTTGAGGACTTTGTTGC+GGG | - | chr4.1:16555165-16555184 | MS.gene34931:intron | 45.0% |
| !! | GAGTGGTAGTAAACTTGCTG+CGG | + | chr4.1:16553465-16553484 | None:intergenic | 45.0% |
| !! | GCCTTTTGAGGACTTTGTTG+CGG | - | chr4.1:16555164-16555183 | MS.gene34931:intron | 45.0% |
| !! | CTAAAAAAAATAAAAATAAA+AGG | + | chr4.1:16553015-16553034 | None:intergenic | 5.0% |
| AAGTTAGCAGTAGCAGCAGC+AGG | + | chr4.1:16555435-16555454 | None:intergenic | 50.0% | |
| ACAATGTGGATTTGCCTCCG+GGG | - | chr4.1:16552489-16552508 | MS.gene34931:intron | 50.0% | |
| ACCCCGACACTTCTGATTGA+AGG | + | chr4.1:16551715-16551734 | None:intergenic | 50.0% | |
| AGCATCAGTGCCTTGGTTGA+AGG | - | chr4.1:16552517-16552536 | MS.gene34931:intron | 50.0% | |
| AGTCTCTTAGGTACGTGGCA+TGG | - | chr4.1:16553537-16553556 | MS.gene34931:intron | 50.0% | |
| ATACATACCGGTGGAACTGC+AGG | + | chr4.1:16553377-16553396 | None:intergenic | 50.0% | |
| CAAAGTCCTCAAAAGGCTGC+AGG | + | chr4.1:16555161-16555180 | None:intergenic | 50.0% | |
| CAACATGTCAGTCTCGTGAC+TGG | + | chr4.1:16551629-16551648 | None:intergenic | 50.0% | |
| CCCGCAACAAAGTCCTCAAA+AGG | + | chr4.1:16555168-16555187 | None:intergenic | 50.0% | |
| CTTCTGTTGCCAGGATGCTT+TGG | - | chr4.1:16552229-16552248 | MS.gene34931:intron | 50.0% | |
| GAAGGATGTCGAATGCAAGC+CGG | - | chr4.1:16552535-16552554 | MS.gene34931:intron | 50.0% | |
| GAATTGGCATGAGAACCAGC+CGG | + | chr4.1:16552557-16552576 | None:intergenic | 50.0% | |
| GACAATGTGGATTTGCCTCC+GGG | - | chr4.1:16552488-16552507 | MS.gene34931:intron | 50.0% | |
| GCACTTGAAGATCCTGACGA+TGG | - | chr4.1:16552401-16552420 | MS.gene34931:intron | 50.0% | |
| GCCACGTACCTAAGAGACTA+AGG | + | chr4.1:16553536-16553555 | None:intergenic | 50.0% | |
| GCCTTAGTCTCTTAGGTACG+TGG | - | chr4.1:16553532-16553551 | MS.gene34931:intron | 50.0% | |
| GGAAGGGTTCTCCACATGTT+TGG | - | chr4.1:16554759-16554778 | MS.gene34931:intron | 50.0% | |
| GGGAGAGTTTACTGCCCATT+TGG | - | chr4.1:16551944-16551963 | MS.gene34931:intron | 50.0% | |
| GTCGGAGAATCATCTGGTAG+TGG | - | chr4.1:16552278-16552297 | MS.gene34931:intron | 50.0% | |
| GTTTAAGGGATGCTTGGAGG+TGG | - | chr4.1:16554679-16554698 | MS.gene34931:intron | 50.0% | |
| TACATACCGGTGGAACTGCA+GGG | + | chr4.1:16553376-16553395 | None:intergenic | 50.0% | |
| TCAGTATGTTCCTCGCCCTT+AGG | + | chr4.1:16555200-16555219 | None:intergenic | 50.0% | |
| TGCGTTTAAGGGATGCTTGG+AGG | - | chr4.1:16554676-16554695 | MS.gene34931:intron | 50.0% | |
| TGCTGCTGCTACTGCTAACT+TGG | - | chr4.1:16555434-16555453 | MS.gene34931:CDS | 50.0% | |
| TGGTTAGGTTAGGTGGCTGA+TGG | - | chr4.1:16554360-16554379 | MS.gene34931:CDS | 50.0% | |
| TTGACGACGACGCCAGAATT+GGG | + | chr4.1:16551167-16551186 | None:intergenic | 50.0% | |
| ! | AAAGTACCCTGCAGTTCCAC+CGG | - | chr4.1:16553367-16553386 | MS.gene34931:intron | 50.0% |
| ! | ACTGAGGGCCTGTTTGGTTT+AGG | + | chr4.1:16554029-16554048 | None:intergenic | 50.0% |
| !! | GCAGTCTGTGGAGCCATTTT+TGG | + | chr4.1:16555376-16555395 | None:intergenic | 50.0% |
| ACTAATCCCCTCGAGCCTTG+TGG | + | chr4.1:16551973-16551992 | None:intergenic | 55.0% | |
| ACTACCACTCAGGTGGCTTG+AGG | - | chr4.1:16553475-16553494 | MS.gene34931:intron | 55.0% | |
| CAATGTGGATTTGCCTCCGG+GGG | - | chr4.1:16552490-16552509 | MS.gene34931:intron | 55.0% | |
| CCTCAAAAGGCTGCAGGTGA+AGG | + | chr4.1:16555155-16555174 | None:intergenic | 55.0% | |
| CTAGGCACTCCCTACCATGA+CGG | - | chr4.1:16553314-16553333 | MS.gene34931:CDS | 55.0% | |
| CTTGACGACGACGCCAGAAT+TGG | + | chr4.1:16551168-16551187 | None:intergenic | 55.0% | |
| GACGCCAGAATTGGGGGAAT+CGG | + | chr4.1:16551159-16551178 | None:intergenic | 55.0% | |
| GATGCTTTGGTCCCTGGTCA+TGG | - | chr4.1:16552242-16552261 | MS.gene34931:intron | 55.0% | |
| GCTGTCATCGTTGGACCTCT+AGG | - | chr4.1:16553296-16553315 | MS.gene34931:CDS | 55.0% | |
| GTATGTTCCTCGCCCTTAGG+CGG | + | chr4.1:16555197-16555216 | None:intergenic | 55.0% | |
| GTCTTTGCACTTGCGTGTGG+AGG | - | chr4.1:16551991-16552010 | MS.gene34931:intron | 55.0% | |
| TGACGACGACGCCAGAATTG+GGG | + | chr4.1:16551166-16551185 | None:intergenic | 55.0% | |
| TGAGGGGCAAAGGAGATCCA+AGG | - | chr4.1:16553689-16553708 | MS.gene34931:intron | 55.0% | |
| TTAGCCTCAAGCCACCTGAG+TGG | + | chr4.1:16553482-16553501 | None:intergenic | 55.0% | |
| ! | ATCGTGCTGATGAGGGGCAA+AGG | - | chr4.1:16553679-16553698 | MS.gene34931:intron | 55.0% |
| ! | CCTTCACCTGCAGCCTTTTG+AGG | - | chr4.1:16555152-16555171 | MS.gene34931:intron | 55.0% |
| ! | CTAATCCCCTCGAGCCTTGT+GGG | + | chr4.1:16551972-16551991 | None:intergenic | 55.0% |
| ! | GAGCCTTGTGGGACCCAAAT+GGG | + | chr4.1:16551961-16551980 | None:intergenic | 55.0% |
| ! | GGAACTGCAGGGTACTTTGC+AGG | + | chr4.1:16553365-16553384 | None:intergenic | 55.0% |
| !! | CATGCCGATTCCCCCAATTC+TGG | - | chr4.1:16551152-16551171 | MS.gene34931:CDS | 55.0% |
| !! | GGGTAGAAGCATCAGTGCCT+TGG | - | chr4.1:16552510-16552529 | MS.gene34931:intron | 55.0% |
| !! | TCATGGTAGGGAGTGCCTAG+AGG | + | chr4.1:16553314-16553333 | None:intergenic | 55.0% |
| ACTGATGCTTCTACCCCCGG+AGG | + | chr4.1:16552506-16552525 | None:intergenic | 60.0% | |
| CTGCCCATTTGGGTCCCACA+AGG | - | chr4.1:16551955-16551974 | MS.gene34931:intron | 60.0% | |
| GACGACGACGCCAGAATTGG+GGG | + | chr4.1:16551165-16551184 | None:intergenic | 60.0% | |
| GATGTCGAATGCAAGCCGGC+TGG | - | chr4.1:16552539-16552558 | MS.gene34931:intron | 60.0% | |
| TATGCTGAGGGGGGACCAGT+TGG | - | chr4.1:16555234-16555253 | MS.gene34931:intron | 60.0% | |
| TGCCAGGATGCTTTGGTCCC+TGG | - | chr4.1:16552236-16552255 | MS.gene34931:intron | 60.0% | |
| TGCGGGACACTTCCGCCTAA+GGG | - | chr4.1:16555182-16555201 | MS.gene34931:intron | 60.0% | |
| TGCTTCAGCCGCAGAGACAC+AGG | - | chr4.1:16552697-16552716 | MS.gene34931:intron | 60.0% | |
| TTGCGGGACACTTCCGCCTA+AGG | - | chr4.1:16555181-16555200 | MS.gene34931:intron | 60.0% | |
| TTGGGTCCCACAAGGCTCGA+GGG | - | chr4.1:16551963-16551982 | MS.gene34931:intron | 60.0% | |
| TTTGGGTCCCACAAGGCTCG+AGG | - | chr4.1:16551962-16551981 | MS.gene34931:intron | 60.0% | |
| ! | CGAGCCTTGTGGGACCCAAA+TGG | + | chr4.1:16551962-16551981 | None:intergenic | 60.0% |
| ! | GACCAGGGACCAAAGCATCC+TGG | + | chr4.1:16552241-16552260 | None:intergenic | 60.0% |
| !! | GGCACTGATGCTTCTACCCC+CGG | + | chr4.1:16552509-16552528 | None:intergenic | 60.0% |
| GACACTTCCGCCTAAGGGCG+AGG | - | chr4.1:16555187-16555206 | MS.gene34931:intron | 65.0% | |
| TGGGTCCCACAAGGCTCGAG+GGG | - | chr4.1:16551964-16551983 | MS.gene34931:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16551137 | 16555497 | 16551137 | ID=MS.gene34931 |
| chr4.1 | mRNA | 16551137 | 16555497 | 16551137 | ID=MS.gene34931.t1;Parent=MS.gene34931 |
| chr4.1 | exon | 16555423 | 16555497 | 16555423 | ID=MS.gene34931.t1.exon1;Parent=MS.gene34931.t1 |
| chr4.1 | CDS | 16555423 | 16555497 | 16555423 | ID=cds.MS.gene34931.t1;Parent=MS.gene34931.t1 |
| chr4.1 | exon | 16553916 | 16554392 | 16553916 | ID=MS.gene34931.t1.exon2;Parent=MS.gene34931.t1 |
| chr4.1 | CDS | 16553916 | 16554392 | 16553916 | ID=cds.MS.gene34931.t1;Parent=MS.gene34931.t1 |
| chr4.1 | exon | 16553750 | 16553813 | 16553750 | ID=MS.gene34931.t1.exon3;Parent=MS.gene34931.t1 |
| chr4.1 | CDS | 16553750 | 16553813 | 16553750 | ID=cds.MS.gene34931.t1;Parent=MS.gene34931.t1 |
| chr4.1 | exon | 16553246 | 16553385 | 16553246 | ID=MS.gene34931.t1.exon4;Parent=MS.gene34931.t1 |
| chr4.1 | CDS | 16553246 | 16553385 | 16553246 | ID=cds.MS.gene34931.t1;Parent=MS.gene34931.t1 |
| chr4.1 | exon | 16552855 | 16553166 | 16552855 | ID=MS.gene34931.t1.exon5;Parent=MS.gene34931.t1 |
| chr4.1 | CDS | 16552855 | 16553166 | 16552855 | ID=cds.MS.gene34931.t1;Parent=MS.gene34931.t1 |
| chr4.1 | exon | 16551137 | 16551469 | 16551137 | ID=MS.gene34931.t1.exon6;Parent=MS.gene34931.t1 |
| chr4.1 | CDS | 16551137 | 16551469 | 16551137 | ID=cds.MS.gene34931.t1;Parent=MS.gene34931.t1 |
| Gene Sequence |
| Protein sequence |
