Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34962.t1 | RHN42336.1 | 98.1 | 267 | 5 | 0 | 1 | 267 | 71 | 337 | 1.30E-155 | 558.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34962.t1 | Q8H129 | 63.3 | 267 | 95 | 2 | 1 | 266 | 97 | 361 | 2.6e-101 | 369.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34962.t1 | A0A396GMI7 | 98.1 | 267 | 5 | 0 | 1 | 267 | 71 | 337 | 9.1e-156 | 558.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene34962 | 0.807319 | 5.36E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene34962 | 0.802521 | 5.39E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene34962 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene04984 | MS.gene34962 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene34962 | -0.818709 | 1.70E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene34962 | 0.819825 | 9.48E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene34962 | 0.818925 | 1.52E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene34962 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene34962 | 0.807715 | 4.41E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene34962 | 0.801983 | 6.96E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene34962 | 0.806165 | 9.39E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene34962 | 0.814992 | 1.16E-51 | -1.69E-46 |
| MS.gene058661 | MS.gene34962 | -0.811148 | 8.09E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene34962 | 0.806194 | 9.26E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene34962 | 0.823196 | 1.58E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34962.t1 | MTR_8g107620 | 62.406 | 266 | 100 | 0 | 1 | 266 | 75 | 340 | 1.61e-123 | 355 |
| MS.gene34962.t1 | MTR_0200s0050 | 63.889 | 216 | 77 | 1 | 51 | 266 | 6 | 220 | 7.25e-99 | 288 |
| MS.gene34962.t1 | MTR_8g107620 | 66.332 | 199 | 67 | 0 | 1 | 199 | 75 | 273 | 3.31e-96 | 284 |
| MS.gene34962.t1 | MTR_8g107620 | 60.000 | 215 | 86 | 0 | 52 | 266 | 85 | 299 | 2.75e-95 | 282 |
| MS.gene34962.t1 | MTR_6g071695 | 65.385 | 52 | 18 | 0 | 1 | 52 | 66 | 117 | 1.06e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34962.t1 | AT1G14700 | 63.296 | 267 | 95 | 2 | 1 | 266 | 1 | 265 | 5.72e-126 | 359 |
| MS.gene34962.t1 | AT1G14700 | 63.296 | 267 | 95 | 2 | 1 | 266 | 97 | 361 | 2.21e-125 | 361 |
| MS.gene34962.t1 | AT2G01890 | 62.977 | 262 | 97 | 0 | 1 | 262 | 1 | 262 | 3.79e-123 | 352 |
| MS.gene34962.t1 | AT2G01880 | 63.359 | 262 | 95 | 1 | 1 | 262 | 64 | 324 | 7.60e-123 | 353 |
| MS.gene34962.t1 | AT2G01890 | 62.977 | 262 | 97 | 0 | 1 | 262 | 68 | 329 | 2.84e-122 | 352 |
| MS.gene34962.t1 | AT1G14700 | 62.547 | 267 | 95 | 3 | 1 | 266 | 97 | 359 | 3.35e-122 | 353 |
| MS.gene34962.t1 | AT1G25230 | 60.456 | 263 | 104 | 0 | 1 | 263 | 1 | 263 | 6.57e-120 | 343 |
| MS.gene34962.t1 | AT3G17790 | 59.623 | 265 | 105 | 1 | 1 | 263 | 69 | 333 | 1.16e-119 | 345 |
| MS.gene34962.t1 | AT1G25230 | 60.456 | 263 | 104 | 0 | 1 | 263 | 69 | 331 | 4.26e-119 | 344 |
| MS.gene34962.t1 | AT1G25230 | 60.456 | 263 | 104 | 0 | 1 | 263 | 92 | 354 | 9.47e-119 | 344 |
| MS.gene34962.t1 | AT2G01890 | 56.870 | 262 | 85 | 1 | 1 | 262 | 68 | 301 | 2.58e-101 | 298 |
| MS.gene34962.t1 | AT1G14700 | 66.667 | 192 | 64 | 0 | 1 | 192 | 97 | 288 | 1.18e-95 | 283 |
Find 52 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATAGGTGTGCTTTCC+TGG | 0.193260 | 4.4:+17824802 | None:intergenic |
| GCAGCTTCTTCCCATCTTAA+AGG | 0.266349 | 4.4:-17824282 | MS.gene34962:intron |
| CCCCAAGTCTGCAACAAATA+TGG | 0.320259 | 4.4:-17825556 | MS.gene34962:CDS |
| TGATACAATTTCAATTCTTT+CGG | 0.326036 | 4.4:+17823928 | None:intergenic |
| ATTCGTAGAAGAGTACTTTA+CGG | 0.375003 | 4.4:-17824827 | MS.gene34962:CDS |
| ATAGAATTTGTGATTTCAAC+TGG | 0.390223 | 4.4:-17825656 | MS.gene34962:CDS |
| TACCATATTTGTTGCAGACT+TGG | 0.392002 | 4.4:+17825554 | None:intergenic |
| ACCATATTTGTTGCAGACTT+GGG | 0.406313 | 4.4:+17825555 | None:intergenic |
| TGGTGCAATCCACGGCAAAA+TGG | 0.406819 | 4.4:-17824373 | MS.gene34962:CDS |
| TTACCGTGCAGAACTCTTGA+AGG | 0.412521 | 4.4:-17824755 | MS.gene34962:intron |
| TGATTCATTTACCTTTAAGA+TGG | 0.422252 | 4.4:+17824271 | None:intergenic |
| AGGCGGATCAAAGGCATGGG+GGG | 0.422798 | 4.4:-17823971 | MS.gene34962:CDS |
| GGCGATGTTGAAGCACAATT+AGG | 0.436553 | 4.4:-17825261 | MS.gene34962:CDS |
| GAAGAGTACTTTACGGATCC+AGG | 0.443975 | 4.4:-17824820 | MS.gene34962:CDS |
| GTAGGAAGTTGATTCAGCTT+TGG | 0.444752 | 4.4:-17824393 | MS.gene34962:intron |
| GGCGGATCAAAGGCATGGGG+GGG | 0.446068 | 4.4:-17823970 | MS.gene34962:CDS |
| CAGGAAAGCACACCTATGAT+TGG | 0.456577 | 4.4:-17824801 | MS.gene34962:CDS |
| GAAGCTGCTCCACAAGCTCT+TGG | 0.468468 | 4.4:+17824297 | None:intergenic |
| CATCATCCTATCAAATCTGC+TGG | 0.475207 | 4.4:-17824335 | MS.gene34962:CDS |
| AATGTTGATGCATACATCAA+TGG | 0.479712 | 4.4:-17824147 | MS.gene34962:CDS |
| TTCAATTCTTTCGGATCCCA+TGG | 0.481311 | 4.4:+17823937 | None:intergenic |
| TGAGGCCCAGCAGATTTGAT+AGG | 0.493170 | 4.4:+17824329 | None:intergenic |
| GAGGCGGATCAAAGGCATGG+GGG | 0.498688 | 4.4:-17823972 | MS.gene34962:CDS |
| AAGCTGCTCCACAAGCTCTT+GGG | 0.499151 | 4.4:+17824298 | None:intergenic |
| ACAAATGACTCGTAGAATGC+TGG | 0.503005 | 4.4:+17825593 | None:intergenic |
| GAATTGAAATTGTATCATGA+TGG | 0.508338 | 4.4:-17823922 | MS.gene34962:CDS |
| ATCAAATCTGCTGGGCCTCA+TGG | 0.519812 | 4.4:-17824326 | MS.gene34962:CDS |
| TGGTAATACCCAAGAGCTTG+TGG | 0.520245 | 4.4:-17824306 | MS.gene34962:CDS |
| TTCAGCTTTGGTGCAATCCA+CGG | 0.527366 | 4.4:-17824381 | MS.gene34962:CDS |
| TGGAGGCGGATCAAAGGCAT+GGG | 0.527611 | 4.4:-17823974 | MS.gene34962:CDS |
| GGAGGCGGATCAAAGGCATG+GGG | 0.529998 | 4.4:-17823973 | MS.gene34962:CDS |
| CAACATCGCCTCTGTAGTCA+TGG | 0.533316 | 4.4:+17825274 | None:intergenic |
| AATTGAAATTGTATCATGAT+GGG | 0.536730 | 4.4:-17823921 | MS.gene34962:CDS |
| CAATGGACATGACCATTGCT+TGG | 0.540065 | 4.4:-17824130 | MS.gene34962:CDS |
| GATTCATTTACCTTTAAGAT+GGG | 0.541987 | 4.4:+17824272 | None:intergenic |
| GTGGAGGCGGATCAAAGGCA+TGG | 0.542993 | 4.4:-17823975 | MS.gene34962:CDS |
| GTAGAATACAATACTAGCAT+TGG | 0.546691 | 4.4:+17823867 | None:intergenic |
| AAGCACGCCTTTCCAATCAT+AGG | 0.546715 | 4.4:+17824789 | None:intergenic |
| CACAAGTGGAGGCGGATCAA+AGG | 0.550379 | 4.4:-17823980 | MS.gene34962:CDS |
| CCATATTTGTTGCAGACTTG+GGG | 0.560850 | 4.4:+17825556 | None:intergenic |
| GTAAAGTACTCTTCTACGAA+TGG | 0.570621 | 4.4:+17824829 | None:intergenic |
| CAATTATGTGCTCCAAGCAA+TGG | 0.573533 | 4.4:+17824118 | None:intergenic |
| CACGGCAAAATGGAAGATAG+TGG | 0.575895 | 4.4:-17824363 | MS.gene34962:CDS |
| ATCATCCTATCAAATCTGCT+GGG | 0.593712 | 4.4:-17824334 | MS.gene34962:CDS |
| AGCACATAATTGACAAAGAG+AGG | 0.601476 | 4.4:-17824107 | MS.gene34962:intron |
| CTGCAACAAATATGGTACAA+TGG | 0.611375 | 4.4:-17825548 | MS.gene34962:intron |
| AAGCACACCTATGATTGGAA+AGG | 0.636206 | 4.4:-17824796 | MS.gene34962:CDS |
| AAATTGTATCATGATGGGCA+AGG | 0.637534 | 4.4:-17823916 | MS.gene34962:CDS |
| TCTGCACGGTAAGATTCAAG+AGG | 0.677833 | 4.4:+17824766 | None:intergenic |
| TTGGGAAACCATGACTACAG+AGG | 0.690051 | 4.4:-17825282 | MS.gene34962:CDS |
| TAACCTTCAAGAGTTCTGCA+CGG | 0.709109 | 4.4:+17824752 | None:intergenic |
| AGCTCTTGGGTATTACCATG+AGG | 0.717481 | 4.4:+17824311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTGTTTATTTCTA+AGG | - | chr4.4:17824364-17824383 | MS.gene34962:CDS | 10.0% |
| !!! | ATGAAAATAAATATTTTCAT+TGG | + | chr4.4:17824170-17824189 | None:intergenic | 10.0% |
| !!! | GTATTCTTTTTTTTTTTTTT+TGG | - | chr4.4:17824598-17824617 | MS.gene34962:intron | 10.0% |
| !!! | TTTTTAAATAAGAACTTTTT+TGG | - | chr4.4:17824834-17824853 | MS.gene34962:CDS | 10.0% |
| !! | TTAAAAAAACCAAAAAAGTT+CGG | + | chr4.4:17824978-17824997 | None:intergenic | 15.0% |
| !!! | AGACACAAATTTTTATTTTT+CGG | - | chr4.4:17824441-17824460 | MS.gene34962:intron | 15.0% |
| !!! | ATGATATATAAGTTTCTTTT+AGG | + | chr4.4:17824571-17824590 | None:intergenic | 15.0% |
| !!! | GAAATAAACAATTTTTTTCT+AGG | + | chr4.4:17824362-17824381 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAATCAAGTAAT+AGG | - | chr4.4:17824882-17824901 | MS.gene34962:intron | 15.0% |
| !! | AAGAAACTTATATATCATCT+TGG | - | chr4.4:17824573-17824592 | MS.gene34962:intron | 20.0% |
| !! | AATTGAAATTGTATCATGAT+GGG | - | chr4.4:17825566-17825585 | MS.gene34962:CDS | 20.0% |
| !! | AGAAACTTATATATCATCTT+GGG | - | chr4.4:17824574-17824593 | MS.gene34962:intron | 20.0% |
| !! | TGATACAATTTCAATTCTTT+CGG | + | chr4.4:17825562-17825581 | None:intergenic | 20.0% |
| !! | TTATAAAATAGAAACACCTA+CGG | + | chr4.4:17824138-17824157 | None:intergenic | 20.0% |
| !!! | AAGCAACTATTTTGAAAAAA+AGG | + | chr4.4:17824104-17824123 | None:intergenic | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | + | chr4.4:17824252-17824271 | None:intergenic | 20.0% |
| ! | AACTGGTTACAAATTGTAAT+AGG | + | chr4.4:17825296-17825315 | None:intergenic | 25.0% |
| ! | AAGGTCTTCTAAACAAAATT+TGG | - | chr4.4:17824383-17824402 | MS.gene34962:CDS | 25.0% |
| ! | ATAGAATTTGTGATTTCAAC+TGG | - | chr4.4:17823831-17823850 | MS.gene34962:CDS | 25.0% |
| ! | GAATTGAAATTGTATCATGA+TGG | - | chr4.4:17825565-17825584 | MS.gene34962:CDS | 25.0% |
| ! | TCGAATAAAATTACTTCAAC+CGG | + | chr4.4:17824009-17824028 | None:intergenic | 25.0% |
| ! | TGATTGATTGTAAATGAAAG+AGG | + | chr4.4:17824062-17824081 | None:intergenic | 25.0% |
| !! | AGATCTTTTATTCTTGATAC+AGG | - | chr4.4:17824289-17824308 | MS.gene34962:CDS | 25.0% |
| !! | ATTGTATTCTACGATGTTTT+TGG | - | chr4.4:17825631-17825650 | MS.gene34962:CDS | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | + | chr4.4:17824253-17824272 | None:intergenic | 25.0% |
| !! | TAATGTGGAATTTTTCTTTG+TGG | - | chr4.4:17824627-17824646 | MS.gene34962:intron | 25.0% |
| !! | TGATTCATTTACCTTTAAGA+TGG | + | chr4.4:17825219-17825238 | None:intergenic | 25.0% |
| !!! | ATAAGAACTTTTTTGGATTC+TGG | - | chr4.4:17824841-17824860 | MS.gene34962:CDS | 25.0% |
| !!! | CTTGCATTAAGTTTGTTAAA+AGG | + | chr4.4:17824322-17824341 | None:intergenic | 25.0% |
| !!! | GATTCATTTACCTTTAAGAT+GGG | + | chr4.4:17825218-17825237 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGTACAGATAATG+TGG | - | chr4.4:17824612-17824631 | MS.gene34962:intron | 25.0% |
| AAAAAACCAAAAAAGTTCGG+TGG | + | chr4.4:17824975-17824994 | None:intergenic | 30.0% | |
| AAGACAAAAAGATAGCAGAT+GGG | - | chr4.4:17824258-17824277 | MS.gene34962:intron | 30.0% | |
| AATAAAATTACTTCAACCGG+AGG | + | chr4.4:17824006-17824025 | None:intergenic | 30.0% | |
| AATGTTGATGCATACATCAA+TGG | - | chr4.4:17825340-17825359 | MS.gene34962:intron | 30.0% | |
| ATAAAATTACTTCAACCGGA+GGG | + | chr4.4:17824005-17824024 | None:intergenic | 30.0% | |
| GTAGAATACAATACTAGCAT+TGG | + | chr4.4:17825623-17825642 | None:intergenic | 30.0% | |
| TAAGACAAAAAGATAGCAGA+TGG | - | chr4.4:17824257-17824276 | MS.gene34962:intron | 30.0% | |
| TACAAATTGTAATAGGCACA+AGG | + | chr4.4:17825289-17825308 | None:intergenic | 30.0% | |
| ! | CATTTTACTGTACCAGTTTT+GGG | - | chr4.4:17824187-17824206 | MS.gene34962:intron | 30.0% |
| ! | CTGACATTTGGAATTATTGT+AGG | - | chr4.4:17825076-17825095 | MS.gene34962:intron | 30.0% |
| ! | GGTGACAATTTTTATGATGA+TGG | - | chr4.4:17823852-17823871 | MS.gene34962:CDS | 30.0% |
| ! | TCATTTTACTGTACCAGTTT+TGG | - | chr4.4:17824186-17824205 | MS.gene34962:intron | 30.0% |
| !! | ATTCGTAGAAGAGTACTTTA+CGG | - | chr4.4:17824660-17824679 | MS.gene34962:intron | 30.0% |
| !! | TGTTTTTGTACACATTGTAG+TGG | - | chr4.4:17825472-17825491 | MS.gene34962:intron | 30.0% |
| !!! | ATTCATTTTTTCACAAGTGG+AGG | - | chr4.4:17825496-17825515 | MS.gene34962:intron | 30.0% |
| !!! | GGAATTCATTTTTTCACAAG+TGG | - | chr4.4:17825493-17825512 | MS.gene34962:intron | 30.0% |
| !!! | TTTTATGATGATGGCCTAAA+AGG | - | chr4.4:17823861-17823880 | MS.gene34962:CDS | 30.0% |
| AGCAATGTGAGAATGACAAT+AGG | + | chr4.4:17825244-17825263 | None:intergenic | 35.0% | |
| AGCACATAATTGACAAAGAG+AGG | - | chr4.4:17825380-17825399 | MS.gene34962:intron | 35.0% | |
| ATCATCCTATCAAATCTGCT+GGG | - | chr4.4:17825153-17825172 | MS.gene34962:intron | 35.0% | |
| CTGCAACAAATATGGTACAA+TGG | - | chr4.4:17823939-17823958 | MS.gene34962:CDS | 35.0% | |
| GCAATGTGAGAATGACAATA+GGG | + | chr4.4:17825243-17825262 | None:intergenic | 35.0% | |
| TACACAAATAGTGCAGAAAC+TGG | + | chr4.4:17825313-17825332 | None:intergenic | 35.0% | |
| TTTCAACTGTGTCTGACATT+TGG | - | chr4.4:17825064-17825083 | MS.gene34962:intron | 35.0% | |
| ! | ACCATATTTGTTGCAGACTT+GGG | + | chr4.4:17823935-17823954 | None:intergenic | 35.0% |
| ! | GTAAAGTACTCTTCTACGAA+TGG | + | chr4.4:17824661-17824680 | None:intergenic | 35.0% |
| ! | TACCATATTTGTTGCAGACT+TGG | + | chr4.4:17823936-17823955 | None:intergenic | 35.0% |
| ! | TGTTTTGTATCCAGATAGCT+GGG | + | chr4.4:17824412-17824431 | None:intergenic | 35.0% |
| ! | TTGGCAAAGTTTTGCATACA+TGG | - | chr4.4:17825650-17825669 | MS.gene34962:CDS | 35.0% |
| !! | AAATTGTATCATGATGGGCA+AGG | - | chr4.4:17825571-17825590 | MS.gene34962:CDS | 35.0% |
| !! | TGCTTTAAAACTTTAGCCGT+AGG | - | chr4.4:17824119-17824138 | MS.gene34962:CDS | 35.0% |
| !! | TTGTTTTGTATCCAGATAGC+TGG | + | chr4.4:17824413-17824432 | None:intergenic | 35.0% |
| AAGCACACCTATGATTGGAA+AGG | - | chr4.4:17824691-17824710 | MS.gene34962:intron | 40.0% | |
| ACAAATGACTCGTAGAATGC+TGG | + | chr4.4:17823897-17823916 | None:intergenic | 40.0% | |
| AGCTTAGCATTGTAACCTCA+AGG | + | chr4.4:17824948-17824967 | None:intergenic | 40.0% | |
| CAATTATGTGCTCCAAGCAA+TGG | + | chr4.4:17825372-17825391 | None:intergenic | 40.0% | |
| CATCATCCTATCAAATCTGC+TGG | - | chr4.4:17825152-17825171 | MS.gene34962:intron | 40.0% | |
| CATGCACATTAGTACTTGAG+AGG | - | chr4.4:17825038-17825057 | MS.gene34962:intron | 40.0% | |
| GATTCGAACTTAGTACCTTG+AGG | - | chr4.4:17824930-17824949 | MS.gene34962:intron | 40.0% | |
| TAACCTTCAAGAGTTCTGCA+CGG | + | chr4.4:17824738-17824757 | None:intergenic | 40.0% | |
| TAGTCATGGTTTCCCAAAAC+TGG | + | chr4.4:17824202-17824221 | None:intergenic | 40.0% | |
| TTCAATTCTTTCGGATCCCA+TGG | + | chr4.4:17825553-17825572 | None:intergenic | 40.0% | |
| TTCTCTTCATACATTCCCTC+CGG | - | chr4.4:17823987-17824006 | MS.gene34962:CDS | 40.0% | |
| ! | AATTTGGTTTCCCAGCTATC+TGG | - | chr4.4:17824399-17824418 | MS.gene34962:intron | 40.0% |
| ! | ATTTTGCAATCGTCTCCTAG+GGG | - | chr4.4:17824907-17824926 | MS.gene34962:intron | 40.0% |
| ! | CATTTTGCAATCGTCTCCTA+GGG | - | chr4.4:17824906-17824925 | MS.gene34962:intron | 40.0% |
| ! | CCATATTTGTTGCAGACTTG+GGG | + | chr4.4:17823934-17823953 | None:intergenic | 40.0% |
| ! | CTGGATCATCAACTCCTTTT+AGG | + | chr4.4:17823878-17823897 | None:intergenic | 40.0% |
| ! | GTAGGAAGTTGATTCAGCTT+TGG | - | chr4.4:17825094-17825113 | MS.gene34962:intron | 40.0% |
| ! | TCATTTTGCAATCGTCTCCT+AGG | - | chr4.4:17824905-17824924 | MS.gene34962:intron | 40.0% |
| !!! | CATTTTTTCACAAGTGGAGG+CGG | - | chr4.4:17825499-17825518 | MS.gene34962:intron | 40.0% |
| !!! | CTCATACCACCGAACTTTTT+TGG | - | chr4.4:17824966-17824985 | MS.gene34962:intron | 40.0% |
| AAGCACGCCTTTCCAATCAT+AGG | + | chr4.4:17824701-17824720 | None:intergenic | 45.0% | |
| AGCTCTTGGGTATTACCATG+AGG | + | chr4.4:17825179-17825198 | None:intergenic | 45.0% | |
| CAATCATAGGTGTGCTTTCC+TGG | + | chr4.4:17824688-17824707 | None:intergenic | 45.0% | |
| CAATGGACATGACCATTGCT+TGG | - | chr4.4:17825357-17825376 | MS.gene34962:intron | 45.0% | |
| CACGGCAAAATGGAAGATAG+TGG | - | chr4.4:17825124-17825143 | MS.gene34962:intron | 45.0% | |
| CCCCAAGTCTGCAACAAATA+TGG | - | chr4.4:17823931-17823950 | MS.gene34962:CDS | 45.0% | |
| GCAGCTTCTTCCCATCTTAA+AGG | - | chr4.4:17825205-17825224 | MS.gene34962:CDS | 45.0% | |
| GGCGATGTTGAAGCACAATT+AGG | - | chr4.4:17824226-17824245 | MS.gene34962:intron | 45.0% | |
| TACTAAGTTCGAATCCCCCT+AGG | + | chr4.4:17824925-17824944 | None:intergenic | 45.0% | |
| TCTGCACGGTAAGATTCAAG+AGG | + | chr4.4:17824724-17824743 | None:intergenic | 45.0% | |
| TGGTAATACCCAAGAGCTTG+TGG | - | chr4.4:17825181-17825200 | MS.gene34962:intron | 45.0% | |
| TTACCGTGCAGAACTCTTGA+AGG | - | chr4.4:17824732-17824751 | MS.gene34962:intron | 45.0% | |
| TTGGGAAACCATGACTACAG+AGG | - | chr4.4:17824205-17824224 | MS.gene34962:intron | 45.0% | |
| ! | CACTATCTTCCATTTTGCCG+TGG | + | chr4.4:17825126-17825145 | None:intergenic | 45.0% |
| ! | CAGGAAAGCACACCTATGAT+TGG | - | chr4.4:17824686-17824705 | MS.gene34962:intron | 45.0% |
| ! | TTCAGCTTTGGTGCAATCCA+CGG | - | chr4.4:17825106-17825125 | MS.gene34962:intron | 45.0% |
| ! | TTTTGCAATCGTCTCCTAGG+GGG | - | chr4.4:17824908-17824927 | MS.gene34962:intron | 45.0% |
| !! | GAAGAGTACTTTACGGATCC+AGG | - | chr4.4:17824667-17824686 | MS.gene34962:intron | 45.0% |
| AAGCTGCTCCACAAGCTCTT+GGG | + | chr4.4:17825192-17825211 | None:intergenic | 50.0% | |
| ATCAAATCTGCTGGGCCTCA+TGG | - | chr4.4:17825161-17825180 | MS.gene34962:intron | 50.0% | |
| CAACATCGCCTCTGTAGTCA+TGG | + | chr4.4:17824216-17824235 | None:intergenic | 50.0% | |
| TGAGGCCCAGCAGATTTGAT+AGG | + | chr4.4:17825161-17825180 | None:intergenic | 50.0% | |
| TGGTGCAATCCACGGCAAAA+TGG | - | chr4.4:17825114-17825133 | MS.gene34962:intron | 50.0% | |
| CACAAGTGGAGGCGGATCAA+AGG | - | chr4.4:17825507-17825526 | MS.gene34962:intron | 55.0% | |
| GAAGCTGCTCCACAAGCTCT+TGG | + | chr4.4:17825193-17825212 | None:intergenic | 55.0% | |
| ! | TGGAGGCGGATCAAAGGCAT+GGG | - | chr4.4:17825513-17825532 | MS.gene34962:intron | 55.0% |
| GGGGGGTGACATCAAGCCAT+GGG | - | chr4.4:17825534-17825553 | MS.gene34962:intron | 60.0% | |
| GTGGAGGCGGATCAAAGGCA+TGG | - | chr4.4:17825512-17825531 | MS.gene34962:intron | 60.0% | |
| ! | AGGCGGATCAAAGGCATGGG+GGG | - | chr4.4:17825516-17825535 | MS.gene34962:intron | 60.0% |
| ! | GAGGCGGATCAAAGGCATGG+GGG | - | chr4.4:17825515-17825534 | MS.gene34962:intron | 60.0% |
| ! | GGAGGCGGATCAAAGGCATG+GGG | - | chr4.4:17825514-17825533 | MS.gene34962:intron | 60.0% |
| GGGGGGGTGACATCAAGCCA+TGG | - | chr4.4:17825533-17825552 | MS.gene34962:intron | 65.0% | |
| ! | GGCGGATCAAAGGCATGGGG+GGG | - | chr4.4:17825517-17825536 | MS.gene34962:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17823804 | 17825705 | 17823804 | ID=MS.gene34962 |
| chr4.4 | mRNA | 17823804 | 17825705 | 17823804 | ID=MS.gene34962.t1;Parent=MS.gene34962 |
| chr4.4 | exon | 17825549 | 17825705 | 17825549 | ID=MS.gene34962.t1.exon1;Parent=MS.gene34962.t1 |
| chr4.4 | CDS | 17825549 | 17825705 | 17825549 | ID=cds.MS.gene34962.t1;Parent=MS.gene34962.t1 |
| chr4.4 | exon | 17825199 | 17825306 | 17825199 | ID=MS.gene34962.t1.exon2;Parent=MS.gene34962.t1 |
| chr4.4 | CDS | 17825199 | 17825306 | 17825199 | ID=cds.MS.gene34962.t1;Parent=MS.gene34962.t1 |
| chr4.4 | exon | 17824756 | 17824883 | 17824756 | ID=MS.gene34962.t1.exon3;Parent=MS.gene34962.t1 |
| chr4.4 | CDS | 17824756 | 17824883 | 17824756 | ID=cds.MS.gene34962.t1;Parent=MS.gene34962.t1 |
| chr4.4 | exon | 17824283 | 17824411 | 17824283 | ID=MS.gene34962.t1.exon4;Parent=MS.gene34962.t1 |
| chr4.4 | CDS | 17824283 | 17824411 | 17824283 | ID=cds.MS.gene34962.t1;Parent=MS.gene34962.t1 |
| chr4.4 | exon | 17824108 | 17824175 | 17824108 | ID=MS.gene34962.t1.exon5;Parent=MS.gene34962.t1 |
| chr4.4 | CDS | 17824108 | 17824175 | 17824108 | ID=cds.MS.gene34962.t1;Parent=MS.gene34962.t1 |
| chr4.4 | exon | 17823804 | 17824017 | 17823804 | ID=MS.gene34962.t1.exon6;Parent=MS.gene34962.t1 |
| chr4.4 | CDS | 17823804 | 17824017 | 17823804 | ID=cds.MS.gene34962.t1;Parent=MS.gene34962.t1 |
| Gene Sequence |
| Protein sequence |
