Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35637.t1 | XP_003601147.2 | 97.6 | 379 | 9 | 0 | 1 | 379 | 1 | 379 | 2.20E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35637.t1 | F4I8K2 | 45.0 | 313 | 167 | 3 | 33 | 344 | 41 | 349 | 4.7e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35637.t1 | G7J473 | 97.6 | 379 | 9 | 0 | 1 | 379 | 1 | 379 | 1.6e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34568 | MS.gene35637 | PPI |
| MS.gene86383 | MS.gene35637 | PPI |
| MS.gene35637 | MS.gene98262 | PPI |
| MS.gene36213 | MS.gene35637 | PPI |
| MS.gene35637 | MS.gene92601 | PPI |
| MS.gene89034 | MS.gene35637 | PPI |
| MS.gene039460 | MS.gene35637 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35637.t1 | MTR_3g073530 | 97.625 | 379 | 9 | 0 | 1 | 379 | 1 | 379 | 0.0 | 763 |
| MS.gene35637.t1 | MTR_2g097210 | 41.261 | 349 | 195 | 3 | 35 | 379 | 39 | 381 | 1.16e-86 | 267 |
| MS.gene35637.t1 | MTR_4g021755 | 41.486 | 323 | 184 | 3 | 21 | 343 | 23 | 340 | 9.60e-84 | 260 |
| MS.gene35637.t1 | MTR_7g498280 | 43.548 | 310 | 165 | 2 | 28 | 334 | 23 | 325 | 6.02e-78 | 243 |
| MS.gene35637.t1 | MTR_7g061780 | 43.648 | 307 | 164 | 4 | 18 | 323 | 5 | 303 | 3.37e-74 | 234 |
| MS.gene35637.t1 | MTR_1g101310 | 40.789 | 304 | 158 | 2 | 37 | 334 | 30 | 317 | 1.96e-68 | 218 |
| MS.gene35637.t1 | MTR_2g097210 | 44.776 | 268 | 141 | 2 | 35 | 301 | 39 | 300 | 4.53e-64 | 206 |
| MS.gene35637.t1 | MTR_2g103600 | 42.481 | 266 | 145 | 3 | 42 | 300 | 33 | 297 | 1.84e-62 | 203 |
| MS.gene35637.t1 | MTR_2g088290 | 27.372 | 274 | 139 | 7 | 64 | 337 | 5 | 218 | 1.17e-19 | 87.0 |
| MS.gene35637.t1 | MTR_0024s0260 | 26.866 | 201 | 135 | 3 | 106 | 304 | 209 | 399 | 9.02e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35637.t1 | AT1G77860 | 55.172 | 348 | 151 | 3 | 33 | 379 | 41 | 384 | 1.47e-139 | 402 |
| MS.gene35637.t1 | AT1G77860 | 54.140 | 314 | 139 | 3 | 33 | 345 | 41 | 350 | 2.71e-119 | 350 |
| MS.gene35637.t1 | AT2G29050 | 42.433 | 337 | 189 | 3 | 43 | 379 | 57 | 388 | 1.26e-92 | 283 |
| MS.gene35637.t1 | AT1G63120 | 42.761 | 297 | 152 | 3 | 42 | 332 | 33 | 317 | 4.16e-78 | 243 |
| MS.gene35637.t1 | AT3G53780 | 39.169 | 337 | 195 | 4 | 43 | 379 | 67 | 393 | 3.24e-76 | 241 |
| MS.gene35637.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.59e-75 | 236 |
| MS.gene35637.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.59e-75 | 236 |
| MS.gene35637.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.59e-75 | 236 |
| MS.gene35637.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.59e-75 | 236 |
| MS.gene35637.t1 | AT1G12750 | 40.968 | 310 | 164 | 5 | 33 | 332 | 7 | 307 | 1.59e-75 | 236 |
| MS.gene35637.t1 | AT5G07250 | 39.938 | 323 | 175 | 5 | 20 | 334 | 34 | 345 | 8.19e-74 | 233 |
| MS.gene35637.t1 | AT2G29050 | 40.767 | 287 | 134 | 5 | 43 | 301 | 57 | 335 | 4.48e-64 | 208 |
| MS.gene35637.t1 | AT3G53780 | 37.050 | 278 | 166 | 3 | 102 | 379 | 1 | 269 | 1.24e-61 | 199 |
| MS.gene35637.t1 | AT1G52580 | 40.972 | 288 | 156 | 6 | 20 | 301 | 7 | 286 | 2.80e-58 | 192 |
| MS.gene35637.t1 | AT3G53780 | 45.854 | 205 | 110 | 1 | 59 | 263 | 83 | 286 | 7.67e-57 | 188 |
| MS.gene35637.t1 | AT4G23070 | 38.365 | 318 | 189 | 2 | 13 | 330 | 2 | 312 | 5.87e-55 | 183 |
| MS.gene35637.t1 | AT1G12750 | 46.995 | 183 | 90 | 2 | 33 | 208 | 7 | 189 | 5.42e-51 | 170 |
| MS.gene35637.t1 | AT1G12750 | 46.995 | 183 | 90 | 2 | 33 | 208 | 7 | 189 | 5.63e-51 | 169 |
| MS.gene35637.t1 | AT5G07250 | 33.438 | 320 | 153 | 6 | 20 | 334 | 34 | 298 | 3.06e-47 | 163 |
| MS.gene35637.t1 | AT1G25290 | 33.333 | 150 | 96 | 3 | 108 | 256 | 159 | 305 | 3.12e-15 | 76.6 |
| MS.gene35637.t1 | AT1G25290 | 31.410 | 156 | 98 | 3 | 108 | 256 | 159 | 312 | 7.87e-14 | 72.4 |
Find 71 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTCTTGCAGTTCTTTA+TGG | 0.123493 | 3.3:-63595048 | MS.gene35637:CDS |
| GGTTCTTCTGGTGCTCTATT+TGG | 0.207313 | 3.3:-63595625 | MS.gene35637:CDS |
| ATCCCTGCTGTTGGTTCTTC+TGG | 0.258304 | 3.3:-63595637 | MS.gene35637:CDS |
| CATTGCTTTCAGAACTTGTT+TGG | 0.286947 | 3.3:-63595591 | MS.gene35637:CDS |
| AGCTAGACAGACCAGTTTCT+AGG | 0.291064 | 3.3:-63595241 | MS.gene35637:CDS |
| TTGTTGTAGGTTGGATGAAA+TGG | 0.322277 | 3.3:-63596307 | MS.gene35637:intron |
| ATTCGCCTAGAGCAGGAGTT+TGG | 0.324869 | 3.3:-63596162 | MS.gene35637:CDS |
| CACTTGACGATGACATGTTT+GGG | 0.326016 | 3.3:-63594184 | MS.gene35637:CDS |
| CACATGGGTGATTTCTGTTA+TGG | 0.348185 | 3.3:-63596745 | MS.gene35637:CDS |
| CTGGAAATATCATACCAAAA+AGG | 0.371080 | 3.3:-63595566 | MS.gene35637:intron |
| TTTGTGTGCAACTTCCTCAT+TGG | 0.377263 | 3.3:-63595431 | MS.gene35637:CDS |
| CTTTACTTGGAGCTACTTGT+TGG | 0.382692 | 3.3:+63595318 | None:intergenic |
| TCGGCGGCGGAGACGGCGGC+TGG | 0.392000 | 3.3:+63596773 | None:intergenic |
| TTTCAGAACTTGTTTGGAAC+TGG | 0.393026 | 3.3:-63595585 | MS.gene35637:CDS |
| TCACTTGACGATGACATGTT+TGG | 0.398308 | 3.3:-63594185 | MS.gene35637:CDS |
| TCAATTTGATCTCCTTTACT+TGG | 0.399081 | 3.3:+63595305 | None:intergenic |
| GGTGCTCTATTTGGATTACT+AGG | 0.406774 | 3.3:-63595616 | MS.gene35637:CDS |
| TTCGCCTAGAGCAGGAGTTT+GGG | 0.411077 | 3.3:-63596161 | MS.gene35637:CDS |
| AGAGAAACAATCCTAGAAAC+TGG | 0.416199 | 3.3:+63595230 | None:intergenic |
| TTCTATATATGCAGATTGGC+TGG | 0.416350 | 3.3:-63595072 | MS.gene35637:intron |
| AGTGCAATCACCGTGAGAAT+TGG | 0.418544 | 3.3:+63596668 | None:intergenic |
| CTTGCTGAAAATCCTCTGTT+AGG | 0.431045 | 3.3:-63596612 | MS.gene35637:CDS |
| TGACGGAACGTCATCAAACT+TGG | 0.448219 | 3.3:-63596263 | MS.gene35637:CDS |
| CTTCAAAACATCCCTGCTGT+TGG | 0.452199 | 3.3:-63595646 | MS.gene35637:CDS |
| TTTGGGGAATGGCAACTTCA+AGG | 0.458362 | 3.3:-63594167 | MS.gene35637:CDS |
| AAAGGAATACAGTCAACATA+TGG | 0.463674 | 3.3:+63594994 | None:intergenic |
| CTCTGCAGTGTCATCTATGT+TGG | 0.465016 | 3.3:-63596186 | MS.gene35637:CDS |
| TGTCAACTCGGCGGCGGAGA+CGG | 0.480816 | 3.3:+63596766 | None:intergenic |
| TGTTGTAGGTTGGATGAAAT+GGG | 0.486882 | 3.3:-63596306 | MS.gene35637:intron |
| TTTATATCAGGATTCCTCCT+TGG | 0.489553 | 3.3:-63595368 | MS.gene35637:CDS |
| ACTGTATTCCTTTCACAAGC+TGG | 0.494213 | 3.3:-63594984 | MS.gene35637:CDS |
| TTAGCTGTATACCTCACAAA+AGG | 0.504592 | 3.3:+63594942 | None:intergenic |
| TCGAGTGGGAGCTTCTTCGC+TGG | 0.511254 | 3.3:+63596822 | None:intergenic |
| TGGCGATGAAGAACCCTAGT+TGG | 0.512974 | 3.3:+63596715 | None:intergenic |
| AACACTCACTTTGACATGGA+AGG | 0.515961 | 3.3:+63596588 | None:intergenic |
| CAACAAGTAGCTCCAAGTAA+AGG | 0.517154 | 3.3:-63595317 | MS.gene35637:CDS |
| AACGAGAACCTTCCAAGAGA+TGG | 0.532436 | 3.3:+63596642 | None:intergenic |
| GAGCTACTTGTTGGAACTGA+GGG | 0.533208 | 3.3:+63595327 | None:intergenic |
| TCCGCCGCCGAGTTGACACA+TGG | 0.533397 | 3.3:-63596761 | MS.gene35637:CDS |
| TGTTGGAATTCGCCTAGAGC+AGG | 0.535446 | 3.3:-63596169 | MS.gene35637:CDS |
| TTGCAGTGCCAGCTTGTGAA+AGG | 0.539450 | 3.3:+63594976 | None:intergenic |
| GCACCAGAAGAACCAACAGC+AGG | 0.542650 | 3.3:+63595634 | None:intergenic |
| GATTTGAGCTGCGGATCTTG+AGG | 0.543922 | 3.3:+63596795 | None:intergenic |
| GTTATGGTGTTAATCCAACT+AGG | 0.549878 | 3.3:-63596729 | MS.gene35637:CDS |
| AATCCTTGCTCGAGAGATGT+TGG | 0.561141 | 3.3:+63594132 | None:intergenic |
| CAACTCGGCGGCGGAGACGG+CGG | 0.566686 | 3.3:+63596769 | None:intergenic |
| ACGGCCCAAACTCCTGCTCT+AGG | 0.571688 | 3.3:+63596157 | None:intergenic |
| CCCATGTGTCAACTCGGCGG+CGG | 0.585405 | 3.3:+63596760 | None:intergenic |
| CGGCGGCTGGATTTGAGCTG+CGG | 0.587185 | 3.3:+63596786 | None:intergenic |
| TTATGGTGTTAATCCAACTA+GGG | 0.587660 | 3.3:-63596728 | MS.gene35637:CDS |
| ACGATGACATGTTTGGGGAA+TGG | 0.594814 | 3.3:-63594178 | MS.gene35637:CDS |
| AAATCACCCATGTGTCAACT+CGG | 0.596088 | 3.3:+63596754 | None:intergenic |
| TGCAGAGATTGATCGCAAGA+TGG | 0.597021 | 3.3:+63596202 | None:intergenic |
| AAACATACAGCAGAGTGAAG+AGG | 0.602409 | 3.3:+63595204 | None:intergenic |
| CACCAGAAGAACCAACAGCA+GGG | 0.607545 | 3.3:+63595635 | None:intergenic |
| TTTGAACACTCACTTTGACA+TGG | 0.608414 | 3.3:+63596584 | None:intergenic |
| ACTTGACGATGACATGTTTG+GGG | 0.614976 | 3.3:-63594183 | MS.gene35637:CDS |
| GGAGCTACTTGTTGGAACTG+AGG | 0.624497 | 3.3:+63595326 | None:intergenic |
| GATTGCTTCACCAATTCTCA+CGG | 0.629587 | 3.3:-63596678 | MS.gene35637:CDS |
| CGAATAGAAGAACAGTTCCA+AGG | 0.630132 | 3.3:+63595351 | None:intergenic |
| GGATCTTGAGGAAGATCGAG+TGG | 0.634181 | 3.3:+63596807 | None:intergenic |
| ACACCAACATCTCTCGAGCA+AGG | 0.643888 | 3.3:-63594135 | MS.gene35637:CDS |
| ACATCAACAGTTATTGCACA+TGG | 0.663755 | 3.3:-63595020 | MS.gene35637:CDS |
| GATCTTGAGGAAGATCGAGT+GGG | 0.666629 | 3.3:+63596808 | None:intergenic |
| CATAAGGCAGAAAACCAATG+AGG | 0.670425 | 3.3:+63595417 | None:intergenic |
| GACATGGAAGGACCTAACAG+AGG | 0.687166 | 3.3:+63596600 | None:intergenic |
| AGCTACTTGTTGGAACTGAG+GGG | 0.687207 | 3.3:+63595328 | None:intergenic |
| CCGCCGCCGAGTTGACACAT+GGG | 0.690890 | 3.3:-63596760 | MS.gene35637:CDS |
| TCACCCATGTGTCAACTCGG+CGG | 0.730803 | 3.3:+63596757 | None:intergenic |
| ATAGAAGAACAGTTCCAAGG+AGG | 0.740367 | 3.3:+63595354 | None:intergenic |
| GCAATCGTTGACGAGCATCG+TGG | 0.744729 | 3.3:+63596695 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATCAAATTTTATCA+TGG | + | chr3.3:63596153-63596172 | None:intergenic | 10.0% |
| !!! | TTATTTTCTCAAAATATTAT+TGG | - | chr3.3:63595117-63595136 | MS.gene35637:intron | 10.0% |
| !!! | TTTTATTCTATTTAATTTGA+GGG | - | chr3.3:63595814-63595833 | MS.gene35637:intron | 10.0% |
| !! | AATTAGAAAAGAAATTTACA+CGG | + | chr3.3:63594837-63594856 | None:intergenic | 15.0% |
| !! | TAAAAATTACAGTTTACATT+AGG | - | chr3.3:63596569-63596588 | MS.gene35637:intron | 15.0% |
| !! | TTCAATAAATTTAACCAAAT+AGG | - | chr3.3:63596261-63596280 | MS.gene35637:CDS | 15.0% |
| !! | TTTAAATGCACAATAATAAA+TGG | - | chr3.3:63596123-63596142 | MS.gene35637:intron | 15.0% |
| !!! | AATTTCTTTTCTAATTCATT+TGG | - | chr3.3:63594841-63594860 | MS.gene35637:intron | 15.0% |
| !!! | GAATTTCTTTTTCAATTTAA+TGG | + | chr3.3:63596244-63596263 | None:intergenic | 15.0% |
| !!! | GTTTTATTCTATTTAATTTG+AGG | - | chr3.3:63595813-63595832 | MS.gene35637:intron | 15.0% |
| !!! | TTTATTCTATTTAATTTGAG+GGG | - | chr3.3:63595815-63595834 | MS.gene35637:intron | 15.0% |
| !!! | TTTTTGATCAATTTTTTCTT+TGG | - | chr3.3:63595478-63595497 | MS.gene35637:intron | 15.0% |
| !! | AGTGATTAATTAAAGTGAAA+TGG | - | chr3.3:63594516-63594535 | MS.gene35637:intron | 20.0% |
| !!! | CAAGTGATATAAATTTTGTT+AGG | + | chr3.3:63596083-63596102 | None:intergenic | 20.0% |
| !!! | TGAAATTGAACTTCATTTTA+GGG | - | chr3.3:63594584-63594603 | MS.gene35637:intron | 20.0% |
| !!! | TGAATTTGAGTTTCTAATTT+AGG | - | chr3.3:63594435-63594454 | MS.gene35637:intron | 20.0% |
| !!! | TTCATTTTAGGGTTAATTTA+GGG | - | chr3.3:63594595-63594614 | MS.gene35637:intron | 20.0% |
| !!! | TTTACATTAGGTTGAATAAT+AGG | - | chr3.3:63596581-63596600 | MS.gene35637:intron | 20.0% |
| !!! | TTTGTTTTTAAATTGCAGTA+AGG | - | chr3.3:63595246-63595265 | MS.gene35637:CDS | 20.0% |
| ! | ACACATGATACACATTTAAT+CGG | - | chr3.3:63594989-63595008 | MS.gene35637:CDS | 25.0% |
| ! | ACCTCTTCAGATTAAAAATT+AGG | + | chr3.3:63596185-63596204 | None:intergenic | 25.0% |
| ! | CATCAAATCATTAAATGAGA+AGG | - | chr3.3:63595873-63595892 | MS.gene35637:intron | 25.0% |
| ! | CTGTGTTTAATGTCTAATTT+AGG | - | chr3.3:63594487-63594506 | MS.gene35637:intron | 25.0% |
| ! | CTTGAAAAATTGTCTACATA+AGG | + | chr3.3:63595574-63595593 | None:intergenic | 25.0% |
| ! | TTCTTTCTATATATGCAGAT+TGG | - | chr3.3:63595896-63595915 | MS.gene35637:intron | 25.0% |
| ! | TTTGCATCATTTCAATCAAT+TGG | + | chr3.3:63595026-63595045 | None:intergenic | 25.0% |
| !! | GGAATTTTATAATGCAACAA+TGG | - | chr3.3:63594625-63594644 | MS.gene35637:intron | 25.0% |
| !! | GTGAAATTGAACTTCATTTT+AGG | - | chr3.3:63594583-63594602 | MS.gene35637:intron | 25.0% |
| !! | TTGATTTTGTCTCTGTATAT+CGG | - | chr3.3:63596531-63596550 | MS.gene35637:intron | 25.0% |
| !! | TTTTAAATTGCAGTAAGGAT+TGG | - | chr3.3:63595251-63595270 | MS.gene35637:CDS | 25.0% |
| !!! | CTGTATTTGGTGTTTAATTT+AGG | - | chr3.3:63594541-63594560 | MS.gene35637:intron | 25.0% |
| !!! | CTTCATTTTAGGGTTAATTT+AGG | - | chr3.3:63594594-63594613 | MS.gene35637:intron | 25.0% |
| !!! | TATATACTATCTGCTTTTGT+GGG | - | chr3.3:63595281-63595300 | MS.gene35637:CDS | 25.0% |
| !!! | TTGATCAATTTTTTCTTTGG+TGG | - | chr3.3:63595481-63595500 | MS.gene35637:intron | 25.0% |
| AAAGGAATACAGTCAACATA+TGG | + | chr3.3:63595981-63596000 | None:intergenic | 30.0% | |
| AAGAAAAAGAGAAGCCATTA+AGG | + | chr3.3:63595309-63595328 | None:intergenic | 30.0% | |
| AAGTGAAATGGAACTGTATT+TGG | - | chr3.3:63594528-63594547 | MS.gene35637:intron | 30.0% | |
| ATGATACACATTTAATCGGT+TGG | - | chr3.3:63594993-63595012 | MS.gene35637:CDS | 30.0% | |
| CTGGAAATATCATACCAAAA+AGG | - | chr3.3:63595406-63595425 | MS.gene35637:CDS | 30.0% | |
| TCAATTTGATCTCCTTTACT+TGG | + | chr3.3:63595670-63595689 | None:intergenic | 30.0% | |
| TGTTAGTAGTTTACCTGATT+TGG | - | chr3.3:63596336-63596355 | MS.gene35637:intron | 30.0% | |
| TTTAATGATTTGATGCATGC+CGG | + | chr3.3:63595868-63595887 | None:intergenic | 30.0% | |
| ! | GCCTAATTTTTAATCTGAAG+AGG | - | chr3.3:63596181-63596200 | MS.gene35637:CDS | 30.0% |
| ! | GGGTTAATTTAGGGTTTAAA+AGG | - | chr3.3:63594604-63594623 | MS.gene35637:intron | 30.0% |
| ! | GTTTCTAATTTAGGTTTCAG+AGG | - | chr3.3:63594444-63594463 | MS.gene35637:intron | 30.0% |
| ! | GTTTGTTGATATTAACTGCA+AGG | - | chr3.3:63596214-63596233 | MS.gene35637:CDS | 30.0% |
| ! | TCTACGAAAGAACTTTTTGA+CGG | - | chr3.3:63594692-63594711 | MS.gene35637:intron | 30.0% |
| ! | TGATTTTGTAATGTCAGTGT+TGG | - | chr3.3:63594949-63594968 | MS.gene35637:intron | 30.0% |
| ! | TTATGGTGTTAATCCAACTA+GGG | - | chr3.3:63594244-63594263 | MS.gene35637:intron | 30.0% |
| !! | CTATATACTATCTGCTTTTG+TGG | - | chr3.3:63595280-63595299 | MS.gene35637:CDS | 30.0% |
| !! | TGAGTTGAATTGAGTTTTGT+TGG | + | chr3.3:63596652-63596671 | None:intergenic | 30.0% |
| !!! | GAGTTGAATTGAGTTTTGTT+GGG | + | chr3.3:63596651-63596670 | None:intergenic | 30.0% |
| !!! | GTAGACAATTTTTCAAGCAT+TGG | - | chr3.3:63595577-63595596 | MS.gene35637:CDS | 30.0% |
| AACAATGAGAAACAGCTATG+AGG | + | chr3.3:63595446-63595465 | None:intergenic | 35.0% | |
| AATCTGAAGAGGTCAATTGT+TGG | - | chr3.3:63596192-63596211 | MS.gene35637:CDS | 35.0% | |
| ACATCAACAGTTATTGCACA+TGG | - | chr3.3:63595952-63595971 | MS.gene35637:intron | 35.0% | |
| AGAGAAACAATCCTAGAAAC+TGG | + | chr3.3:63595745-63595764 | None:intergenic | 35.0% | |
| ATATAGCTAGTAGCCAAATC+AGG | + | chr3.3:63596352-63596371 | None:intergenic | 35.0% | |
| ATCTATAAAGCAGAGAACAG+TGG | + | chr3.3:63595168-63595187 | None:intergenic | 35.0% | |
| CTTCTATCTATTGTGCTTTC+CGG | - | chr3.3:63595846-63595865 | MS.gene35637:intron | 35.0% | |
| GCTGACATAACATTCCTATT+TGG | + | chr3.3:63596278-63596297 | None:intergenic | 35.0% | |
| TACTAACTGATATGTGTCAC+TGG | - | chr3.3:63596299-63596318 | MS.gene35637:CDS | 35.0% | |
| TGTCTTCTTGCAGTTCTTTA+TGG | - | chr3.3:63595924-63595943 | MS.gene35637:intron | 35.0% | |
| TTAGCTGTATACCTCACAAA+AGG | + | chr3.3:63596033-63596052 | None:intergenic | 35.0% | |
| TTCTATATATGCAGATTGGC+TGG | - | chr3.3:63595900-63595919 | MS.gene35637:intron | 35.0% | |
| TTGAATGTATCCACATGTGT+CGG | + | chr3.3:63595092-63595111 | None:intergenic | 35.0% | |
| TTTATATCAGGATTCCTCCT+TGG | - | chr3.3:63595604-63595623 | MS.gene35637:CDS | 35.0% | |
| TTTGAACACTCACTTTGACA+TGG | + | chr3.3:63594391-63594410 | None:intergenic | 35.0% | |
| ! | AGTGTTGTTGTTGTTGTTGT+AGG | - | chr3.3:63594652-63594671 | MS.gene35637:intron | 35.0% |
| ! | CATTGCTTTCAGAACTTGTT+TGG | - | chr3.3:63595381-63595400 | MS.gene35637:CDS | 35.0% |
| ! | CGAAAAACTAAGCACCTTTT+TGG | + | chr3.3:63595423-63595442 | None:intergenic | 35.0% |
| ! | GATTTGTTTCCATACTAGTC+AGG | - | chr3.3:63596445-63596464 | MS.gene35637:intron | 35.0% |
| ! | GTTATGGTGTTAATCCAACT+AGG | - | chr3.3:63594243-63594262 | MS.gene35637:intron | 35.0% |
| ! | TGAGGTATACAGCTAACTTT+TGG | - | chr3.3:63596037-63596056 | MS.gene35637:intron | 35.0% |
| ! | TGTTGTAGGTTGGATGAAAT+GGG | - | chr3.3:63594666-63594685 | MS.gene35637:intron | 35.0% |
| ! | TTGTTGTAGGTTGGATGAAA+TGG | - | chr3.3:63594665-63594684 | MS.gene35637:intron | 35.0% |
| ! | TTGTTGTTGTTGTTGTAGGT+TGG | - | chr3.3:63594656-63594675 | MS.gene35637:intron | 35.0% |
| ! | TTTCAGAACTTGTTTGGAAC+TGG | - | chr3.3:63595387-63595406 | MS.gene35637:CDS | 35.0% |
| !!! | AGCATTGGTGGTTTTATATC+AGG | - | chr3.3:63595592-63595611 | MS.gene35637:CDS | 35.0% |
| !!! | GACAATTTTTCAAGCATTGG+TGG | - | chr3.3:63595580-63595599 | MS.gene35637:CDS | 35.0% |
| !!! | TTGAATTGAGTTTTGTTGGG+AGG | + | chr3.3:63596648-63596667 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTTGGTGGAATGC+AGG | - | chr3.3:63595489-63595508 | MS.gene35637:intron | 35.0% |
| AAAAGTCCAGCGTGCAAAAA+TGG | + | chr3.3:63594750-63594769 | None:intergenic | 40.0% | |
| AAACATACAGCAGAGTGAAG+AGG | + | chr3.3:63595771-63595790 | None:intergenic | 40.0% | |
| AAATCACCCATGTGTCAACT+CGG | + | chr3.3:63594221-63594240 | None:intergenic | 40.0% | |
| AACACTCACTTTGACATGGA+AGG | + | chr3.3:63594387-63594406 | None:intergenic | 40.0% | |
| ACTGTATTCCTTTCACAAGC+TGG | - | chr3.3:63595988-63596007 | MS.gene35637:intron | 40.0% | |
| ACTTGACGATGACATGTTTG+GGG | - | chr3.3:63596789-63596808 | MS.gene35637:CDS | 40.0% | |
| ATAGAAGAACAGTTCCAAGG+AGG | + | chr3.3:63595621-63595640 | None:intergenic | 40.0% | |
| ATTGCCAACAAGAAACAGTG+TGG | + | chr3.3:63596380-63596399 | None:intergenic | 40.0% | |
| CAACAAGTAGCTCCAAGTAA+AGG | - | chr3.3:63595655-63595674 | MS.gene35637:CDS | 40.0% | |
| CACATGGGTGATTTCTGTTA+TGG | - | chr3.3:63594227-63594246 | MS.gene35637:intron | 40.0% | |
| CACTTGACGATGACATGTTT+GGG | - | chr3.3:63596788-63596807 | MS.gene35637:CDS | 40.0% | |
| CATAAGGCAGAAAACCAATG+AGG | + | chr3.3:63595558-63595577 | None:intergenic | 40.0% | |
| CGAATAGAAGAACAGTTCCA+AGG | + | chr3.3:63595624-63595643 | None:intergenic | 40.0% | |
| CTTGCTGAAAATCCTCTGTT+AGG | - | chr3.3:63594360-63594379 | MS.gene35637:intron | 40.0% | |
| CTTTACTTGGAGCTACTTGT+TGG | + | chr3.3:63595657-63595676 | None:intergenic | 40.0% | |
| GATTGCTTCACCAATTCTCA+CGG | - | chr3.3:63594294-63594313 | MS.gene35637:intron | 40.0% | |
| GGTGCTCTATTTGGATTACT+AGG | - | chr3.3:63595356-63595375 | MS.gene35637:CDS | 40.0% | |
| TCACTTGACGATGACATGTT+TGG | - | chr3.3:63596787-63596806 | MS.gene35637:CDS | 40.0% | |
| TGACAAACACATGCTTATGC+TGG | - | chr3.3:63596724-63596743 | MS.gene35637:CDS | 40.0% | |
| TGTACTACAACTGCAGACAA+TGG | - | chr3.3:63596754-63596773 | MS.gene35637:CDS | 40.0% | |
| TTTGTGTGCAACTTCCTCAT+TGG | - | chr3.3:63595541-63595560 | MS.gene35637:intron | 40.0% | |
| ! | AACAGAGGATTTTCAGCAAG+AGG | + | chr3.3:63594360-63594379 | None:intergenic | 40.0% |
| ! | AGACAGAGAAACCTTTTGTG+AGG | - | chr3.3:63596019-63596038 | MS.gene35637:intron | 40.0% |
| ! | CTTTCCACACTGTTTCTTGT+TGG | - | chr3.3:63596373-63596392 | MS.gene35637:intron | 40.0% |
| ! | GATTGCACTTTTCCATCTCT+TGG | - | chr3.3:63594318-63594337 | MS.gene35637:intron | 40.0% |
| !! | TGTTTCTATGTTTTCCGCAC+TGG | - | chr3.3:63594868-63594887 | MS.gene35637:intron | 40.0% |
| AACGAGAACCTTCCAAGAGA+TGG | + | chr3.3:63594333-63594352 | None:intergenic | 45.0% | |
| AATCCTTGCTCGAGAGATGT+TGG | + | chr3.3:63596843-63596862 | None:intergenic | 45.0% | |
| ACGACACATAGATACCGAAG+TGG | - | chr3.3:63594905-63594924 | MS.gene35637:intron | 45.0% | |
| ACGATGACATGTTTGGGGAA+TGG | - | chr3.3:63596794-63596813 | MS.gene35637:CDS | 45.0% | |
| AGCTAGACAGACCAGTTTCT+AGG | - | chr3.3:63595731-63595750 | MS.gene35637:intron | 45.0% | |
| AGTGCAATCACCGTGAGAAT+TGG | + | chr3.3:63594307-63594326 | None:intergenic | 45.0% | |
| CATAGATACCGAAGTGGAAG+TGG | - | chr3.3:63594911-63594930 | MS.gene35637:intron | 45.0% | |
| CTCTGCAGTGTCATCTATGT+TGG | - | chr3.3:63594786-63594805 | MS.gene35637:intron | 45.0% | |
| CTTCAAAACATCCCTGCTGT+TGG | - | chr3.3:63595326-63595345 | MS.gene35637:CDS | 45.0% | |
| GATCTTGAGGAAGATCGAGT+GGG | + | chr3.3:63594167-63594186 | None:intergenic | 45.0% | |
| GGTTCTTCTGGTGCTCTATT+TGG | - | chr3.3:63595347-63595366 | MS.gene35637:CDS | 45.0% | |
| TGACGGAACGTCATCAAACT+TGG | - | chr3.3:63594709-63594728 | MS.gene35637:intron | 45.0% | |
| TGCAGAGATTGATCGCAAGA+TGG | + | chr3.3:63594773-63594792 | None:intergenic | 45.0% | |
| TGTGAGCTTCCTGACTAGTA+TGG | + | chr3.3:63596457-63596476 | None:intergenic | 45.0% | |
| TTCCACTTCCACTTCCACTT+CGG | + | chr3.3:63594922-63594941 | None:intergenic | 45.0% | |
| TTTGGGGAATGGCAACTTCA+AGG | - | chr3.3:63596805-63596824 | MS.gene35637:CDS | 45.0% | |
| ! | AGCTACTTGTTGGAACTGAG+GGG | + | chr3.3:63595647-63595666 | None:intergenic | 45.0% |
| ! | GAGCTACTTGTTGGAACTGA+GGG | + | chr3.3:63595648-63595667 | None:intergenic | 45.0% |
| ! | GCACTGACATTGCGTATTGA+AGG | - | chr3.3:63595054-63595073 | MS.gene35637:CDS | 45.0% |
| ! | GCACTTTTCCATCTCTTGGA+AGG | - | chr3.3:63594322-63594341 | MS.gene35637:intron | 45.0% |
| ! | TGCTTTTGTGGGTGCCTTAA+TGG | - | chr3.3:63595292-63595311 | MS.gene35637:CDS | 45.0% |
| ! | TTGCGTATTGAAGGCGTGTT+TGG | - | chr3.3:63595063-63595082 | MS.gene35637:intron | 45.0% |
| !! | ACGTTTCCATTTTTGCACGC+TGG | - | chr3.3:63594741-63594760 | MS.gene35637:intron | 45.0% |
| ACACCAACATCTCTCGAGCA+AGG | - | chr3.3:63596837-63596856 | MS.gene35637:CDS | 50.0% | |
| AGTGGAAGTGGAAGTGGAAG+TGG | - | chr3.3:63594923-63594942 | MS.gene35637:intron | 50.0% | |
| ATTCGCCTAGAGCAGGAGTT+TGG | - | chr3.3:63594810-63594829 | MS.gene35637:intron | 50.0% | |
| CACCAGAAGAACCAACAGCA+GGG | + | chr3.3:63595340-63595359 | None:intergenic | 50.0% | |
| CGGTATCTATGTGTCGTGTC+CGG | + | chr3.3:63594902-63594921 | None:intergenic | 50.0% | |
| GACATGGAAGGACCTAACAG+AGG | + | chr3.3:63594375-63594394 | None:intergenic | 50.0% | |
| GATTTGAGCTGCGGATCTTG+AGG | + | chr3.3:63594180-63594199 | None:intergenic | 50.0% | |
| GGATCTTGAGGAAGATCGAG+TGG | + | chr3.3:63594168-63594187 | None:intergenic | 50.0% | |
| TACCGAAGTGGAAGTGGAAG+TGG | - | chr3.3:63594917-63594936 | MS.gene35637:intron | 50.0% | |
| TGGCGATGAAGAACCCTAGT+TGG | + | chr3.3:63594260-63594279 | None:intergenic | 50.0% | |
| TGTTGGAATTCGCCTAGAGC+AGG | - | chr3.3:63594803-63594822 | MS.gene35637:intron | 50.0% | |
| TTCGCCTAGAGCAGGAGTTT+GGG | - | chr3.3:63594811-63594830 | MS.gene35637:intron | 50.0% | |
| TTGCAGTGCCAGCTTGTGAA+AGG | + | chr3.3:63595999-63596018 | None:intergenic | 50.0% | |
| ! | GGAGCTACTTGTTGGAACTG+AGG | + | chr3.3:63595649-63595668 | None:intergenic | 50.0% |
| !! | ATCCCTGCTGTTGGTTCTTC+TGG | - | chr3.3:63595335-63595354 | MS.gene35637:CDS | 50.0% |
| !! | TGTTTGGTGTCCGACACATG+TGG | - | chr3.3:63595079-63595098 | MS.gene35637:intron | 50.0% |
| GCACCAGAAGAACCAACAGC+AGG | + | chr3.3:63595341-63595360 | None:intergenic | 55.0% | |
| TCACCCATGTGTCAACTCGG+CGG | + | chr3.3:63594218-63594237 | None:intergenic | 55.0% | |
| ! | GCAATCGTTGACGAGCATCG+TGG | + | chr3.3:63594280-63594299 | None:intergenic | 55.0% |
| ! | TTCCGCACTGGCACAAACAC+CGG | - | chr3.3:63594880-63594899 | MS.gene35637:intron | 55.0% |
| ACGGCCCAAACTCCTGCTCT+AGG | + | chr3.3:63594818-63594837 | None:intergenic | 60.0% | |
| GTCCGGTGTTTGTGCCAGTG+CGG | + | chr3.3:63594885-63594904 | None:intergenic | 60.0% | |
| TCGAGTGGGAGCTTCTTCGC+TGG | + | chr3.3:63594153-63594172 | None:intergenic | 60.0% | |
| CCCATGTGTCAACTCGGCGG+CGG | + | chr3.3:63594215-63594234 | None:intergenic | 65.0% | |
| CGGCGGCTGGATTTGAGCTG+CGG | + | chr3.3:63594189-63594208 | None:intergenic | 65.0% | |
| TGTCAACTCGGCGGCGGAGA+CGG | + | chr3.3:63594209-63594228 | None:intergenic | 65.0% | |
| ! | CCGCCGCCGAGTTGACACAT+GGG | - | chr3.3:63594212-63594231 | MS.gene35637:intron | 65.0% |
| ! | TCCGCCGCCGAGTTGACACA+TGG | - | chr3.3:63594211-63594230 | MS.gene35637:intron | 65.0% |
| CAACTCGGCGGCGGAGACGG+CGG | + | chr3.3:63594206-63594225 | None:intergenic | 75.0% | |
| ! | TCGGCGGCGGAGACGGCGGC+TGG | + | chr3.3:63594202-63594221 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 63594105 | 63596889 | 63594105 | ID=MS.gene35637 |
| chr3.3 | mRNA | 63594105 | 63596889 | 63594105 | ID=MS.gene35637.t1;Parent=MS.gene35637 |
| chr3.3 | exon | 63596597 | 63596889 | 63596597 | ID=MS.gene35637.t1.exon1;Parent=MS.gene35637.t1 |
| chr3.3 | CDS | 63596597 | 63596889 | 63596597 | ID=cds.MS.gene35637.t1;Parent=MS.gene35637.t1 |
| chr3.3 | exon | 63596157 | 63596320 | 63596157 | ID=MS.gene35637.t1.exon2;Parent=MS.gene35637.t1 |
| chr3.3 | CDS | 63596157 | 63596320 | 63596157 | ID=cds.MS.gene35637.t1;Parent=MS.gene35637.t1 |
| chr3.3 | exon | 63595567 | 63595730 | 63595567 | ID=MS.gene35637.t1.exon3;Parent=MS.gene35637.t1 |
| chr3.3 | CDS | 63595567 | 63595730 | 63595567 | ID=cds.MS.gene35637.t1;Parent=MS.gene35637.t1 |
| chr3.3 | exon | 63595212 | 63595483 | 63595212 | ID=MS.gene35637.t1.exon4;Parent=MS.gene35637.t1 |
| chr3.3 | CDS | 63595212 | 63595483 | 63595212 | ID=cds.MS.gene35637.t1;Parent=MS.gene35637.t1 |
| chr3.3 | exon | 63594954 | 63595080 | 63594954 | ID=MS.gene35637.t1.exon5;Parent=MS.gene35637.t1 |
| chr3.3 | CDS | 63594954 | 63595080 | 63594954 | ID=cds.MS.gene35637.t1;Parent=MS.gene35637.t1 |
| chr3.3 | exon | 63594105 | 63594224 | 63594105 | ID=MS.gene35637.t1.exon6;Parent=MS.gene35637.t1 |
| chr3.3 | CDS | 63594105 | 63594224 | 63594105 | ID=cds.MS.gene35637.t1;Parent=MS.gene35637.t1 |
| Gene Sequence |
| Protein sequence |
