AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35708.t1 MTR_2g087960 95.067 750 36 1 1 749 1 750 0.0 1458
MS.gene35708.t1 MTR_2g087980 86.400 750 91 4 1 749 1 740 0.0 1333
MS.gene35708.t1 MTR_2g087960 95.246 568 26 1 1 567 1 568 0.0 1108
MS.gene35708.t1 MTR_2g087900 59.019 754 289 10 1 742 3 748 0.0 882
MS.gene35708.t1 MTR_4g050000 57.944 749 305 7 1 747 1 741 0.0 881
MS.gene35708.t1 MTR_2g087950 58.435 741 284 10 1 735 1 723 0.0 846
MS.gene35708.t1 MTR_2g087900 59.897 581 216 7 1 571 3 576 0.0 706
MS.gene35708.t1 MTR_2g087900 58.947 475 177 8 1 465 3 469 0.0 548
MS.gene35708.t1 MTR_2g087900 64.368 348 118 4 1 346 3 346 5.20e-157 459
MS.gene35708.t1 MTR_3g060220 34.088 751 453 13 1 737 1 723 7.57e-138 424
MS.gene35708.t1 MTR_3g060220 34.221 751 451 14 1 737 1 722 1.08e-137 423
MS.gene35708.t1 MTR_4g130510 35.025 808 433 20 1 739 228 1012 6.69e-137 430
MS.gene35708.t1 MTR_3g060280 34.838 709 409 14 50 740 60 733 6.98e-134 414
MS.gene35708.t1 MTR_3g060240 34.082 757 448 16 1 737 1 726 3.12e-133 412
MS.gene35708.t1 MTR_8g086600 33.846 780 443 16 21 739 196 963 1.14e-132 417
MS.gene35708.t1 MTR_2g016630 33.376 785 443 15 21 739 181 951 1.56e-132 417
MS.gene35708.t1 MTR_1g069605 33.249 794 460 17 1 739 88 866 1.28e-130 410
MS.gene35708.t1 MTR_3g107520 33.779 823 441 21 1 739 258 1060 1.44e-130 414
MS.gene35708.t1 MTR_4g130510 33.610 842 433 21 1 739 228 1046 6.47e-130 412
MS.gene35708.t1 MTR_8g063270 34.338 763 433 20 26 739 7 750 7.43e-129 402
MS.gene35708.t1 MTR_8g037260 33.376 782 432 16 34 739 284 1052 8.31e-129 410
MS.gene35708.t1 MTR_1g098550 33.049 820 450 18 2 739 265 1067 5.13e-128 408
MS.gene35708.t1 MTR_1g098550 33.049 820 450 18 2 739 269 1071 5.17e-128 408
MS.gene35708.t1 MTR_8g063270 33.628 791 456 20 1 739 182 955 3.65e-127 403
MS.gene35708.t1 MTR_4g130510 37.304 638 330 14 1 581 228 852 9.70e-121 383
MS.gene35708.t1 MTR_3g060280 35.945 587 317 11 8 571 10 560 6.32e-115 360
MS.gene35708.t1 MTR_3g060280 35.849 583 315 11 8 567 10 556 4.72e-114 357
MS.gene35708.t1 MTR_5g029190 30.664 874 452 26 8 747 252 1105 1.93e-111 364
MS.gene35708.t1 MTR_4g088225 31.967 732 444 17 34 744 37 735 1.09e-108 348
MS.gene35708.t1 MTR_1g039445 30.535 822 433 22 18 719 258 1061 6.00e-108 354
MS.gene35708.t1 MTR_1g073740 32.073 767 451 20 2 739 4 729 7.09e-108 345
MS.gene35708.t1 MTR_4g088225 31.972 710 430 16 34 723 37 713 1.88e-107 344
MS.gene35708.t1 MTR_1g039480 30.896 848 433 26 8 719 259 1089 7.66e-107 352
MS.gene35708.t1 MTR_2g037830 31.337 718 449 16 16 723 8 691 9.43e-107 341
MS.gene35708.t1 MTR_4g077910 30.241 873 457 29 8 747 273 1126 7.45e-106 349
MS.gene35708.t1 MTR_2g438220 29.440 839 450 22 8 719 159 982 3.60e-104 343
MS.gene35708.t1 MTR_0011s0020 30.812 714 448 15 16 718 8 686 1.00e-103 333
MS.gene35708.t1 MTR_3g005560 30.435 667 423 12 16 672 8 643 2.25e-103 332
MS.gene35708.t1 MTR_7g109200 29.851 871 450 24 8 738 297 1146 5.10e-103 342
MS.gene35708.t1 MTR_3g450800 30.376 665 420 16 62 718 8 637 1.96e-97 315
MS.gene35708.t1 MTR_2g087900 61.885 244 88 3 1 242 3 243 3.86e-96 300
MS.gene35708.t1 MTR_3g005560 31.607 560 345 10 16 567 8 537 6.07e-93 301
MS.gene35708.t1 MTR_4g130510 37.698 504 252 12 1 448 228 725 1.21e-91 302
MS.gene35708.t1 MTR_2g037830 34.756 492 284 11 16 499 8 470 2.92e-88 288
MS.gene35708.t1 MTR_8g092590 41.772 395 209 9 1 377 266 657 1.14e-86 296
MS.gene35708.t1 MTR_8g092590 31.267 371 230 7 381 739 713 1070 3.93e-41 162
MS.gene35708.t1 MTR_3g060280 35.118 467 245 10 8 451 10 441 2.37e-86 280
MS.gene35708.t1 MTR_2g035780 41.667 396 214 7 1 380 199 593 1.36e-85 292
MS.gene35708.t1 MTR_2g035780 30.056 356 227 8 391 739 678 1018 3.66e-39 156
MS.gene35708.t1 MTR_3g030040 40.712 393 212 10 3 377 250 639 2.51e-85 292
MS.gene35708.t1 MTR_3g030040 30.398 352 232 5 391 739 711 1052 4.08e-40 159
MS.gene35708.t1 MTR_7g116230 31.826 619 311 19 1 534 122 714 1.95e-84 286
MS.gene35708.t1 MTR_3g007770 41.162 396 212 10 1 378 215 607 1.51e-82 284
MS.gene35708.t1 MTR_3g007770 29.917 361 238 7 391 745 679 1030 1.51e-37 151
MS.gene35708.t1 MTR_7g106680 39.031 392 220 9 3 377 208 597 5.08e-81 280
MS.gene35708.t1 MTR_7g106680 30.056 356 236 6 387 739 661 1006 2.56e-41 163
MS.gene35708.t1 MTR_3g005560 32.731 443 261 9 16 450 8 421 4.57e-73 244
MS.gene35708.t1 MTR_3g091270 33.716 436 191 14 92 472 104 496 6.71e-56 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35708.t1 AT2G32530 46.631 757 369 10 8 743 10 752 0.0 668
MS.gene35708.t1 AT2G32540 47.354 756 359 12 8 740 10 749 0.0 647
MS.gene35708.t1 AT4G15320 45.276 762 376 13 7 742 9 755 0.0 634
MS.gene35708.t1 AT4G15320 45.216 763 377 13 7 743 9 756 0.0 634
MS.gene35708.t1 AT4G15320 44.344 778 377 14 7 743 9 771 0.0 625
MS.gene35708.t1 AT2G32620 46.438 758 371 12 8 743 10 754 0.0 619
MS.gene35708.t1 AT2G32610 43.627 761 390 13 8 743 10 756 0.0 608
MS.gene35708.t1 AT4G15290 44.723 758 382 12 8 742 10 753 0.0 588
MS.gene35708.t1 AT2G32620 45.796 666 331 10 100 743 1 658 0.0 550
MS.gene35708.t1 AT2G32620 47.176 602 295 8 8 599 10 598 0.0 531
MS.gene35708.t1 AT4G15320 42.385 696 316 12 7 646 9 675 3.06e-180 535
MS.gene35708.t1 AT4G15320 40.054 739 315 14 7 646 9 718 1.29e-171 514
MS.gene35708.t1 AT2G32620 49.328 521 238 8 8 516 10 516 2.79e-162 480
MS.gene35708.t1 AT5G17420 35.037 802 442 17 1 739 215 1000 8.04e-140 437
MS.gene35708.t1 AT5G09870 34.022 823 447 17 1 741 241 1049 5.68e-137 431
MS.gene35708.t1 AT5G05170 34.352 818 440 18 3 739 238 1039 2.83e-136 429
MS.gene35708.t1 AT4G18780 34.300 793 438 16 16 739 179 957 1.70e-134 422
MS.gene35708.t1 AT4G32410 33.824 816 450 19 1 739 252 1054 2.56e-134 424
MS.gene35708.t1 AT5G64740 33.333 822 457 17 1 741 253 1064 3.30e-134 424
MS.gene35708.t1 AT1G55850 36.224 715 399 16 37 737 49 720 1.65e-133 412
MS.gene35708.t1 AT2G25540 33.824 816 450 20 1 739 232 1034 3.32e-132 418
MS.gene35708.t1 AT2G21770 33.577 822 452 18 1 741 259 1067 2.92e-130 414
MS.gene35708.t1 AT4G23990 32.668 701 407 18 62 740 86 743 3.68e-110 352
MS.gene35708.t1 AT4G24000 33.195 723 419 18 35 739 37 713 4.75e-110 351
MS.gene35708.t1 AT4G24010 33.716 697 386 18 35 706 40 685 1.56e-108 348
MS.gene35708.t1 AT1G32180 31.250 832 423 25 25 720 123 941 1.37e-107 351
MS.gene35708.t1 AT1G32180 31.250 832 423 25 25 720 123 941 1.37e-107 351
MS.gene35708.t1 AT4G38190 30.266 826 445 23 8 719 256 1064 9.59e-105 346
MS.gene35708.t1 AT2G33100 29.524 840 454 20 8 719 167 996 1.85e-103 341
MS.gene35708.t1 AT2G33100 29.524 840 454 20 8 719 167 996 1.85e-103 341
MS.gene35708.t1 AT1G02730 29.909 876 450 25 8 738 302 1158 6.85e-103 342
MS.gene35708.t1 AT3G03050 30.605 843 437 25 8 719 278 1103 3.01e-102 340
MS.gene35708.t1 AT5G16910 29.727 841 444 24 8 719 281 1103 1.01e-97 327
MS.gene35708.t1 AT4G39350 41.667 396 210 9 1 378 254 646 4.00e-87 297
MS.gene35708.t1 AT4G39350 29.296 355 239 4 387 739 713 1057 6.00e-36 146
MS.gene35708.t1 AT5G44030 41.944 391 206 10 8 380 199 586 1.98e-84 289
MS.gene35708.t1 AT5G44030 30.137 365 235 8 381 739 673 1023 2.98e-38 154
MS.gene35708.t1 AT5G44030 41.944 391 206 10 8 380 228 615 2.68e-84 289
MS.gene35708.t1 AT5G44030 30.137 365 235 8 381 739 702 1052 2.51e-38 154
MS.gene35708.t1 AT5G44030 45.667 300 151 6 92 380 9 307 9.80e-76 260
MS.gene35708.t1 AT5G44030 30.137 365 235 8 381 739 394 744 1.35e-38 154
MS.gene35708.t1 AT4G24000 31.900 558 323 14 199 738 2 520 8.64e-73 246
MS.gene35708.t1 AT4G23990 30.986 568 326 16 199 740 2 529 1.21e-71 244

Find 142 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCAAAACTTAGCAAATT+TGG 0.129090 2.1:-13966877 None:intergenic
AGCACTTGTTGTTAAGATTT+TGG 0.131027 2.1:+13969506 MS.gene35708:CDS
AAGGATTATCATTAAGATTT+TGG 0.147084 2.1:+13969256 MS.gene35708:CDS
TCAACAAGTGTATGGTTTAT+TGG 0.197802 2.1:+13969309 MS.gene35708:CDS
CTTCCAAATTTGCTAAGTTT+TGG 0.203327 2.1:+13966874 MS.gene35708:CDS
CATCAGATGGGTTGGTTATA+TGG 0.220657 2.1:+13968632 MS.gene35708:intron
GGAATTAAAGATGACCCTTT+TGG 0.230566 2.1:+13967822 MS.gene35708:CDS
AGCAAGCATTCTCCTGTTAT+AGG 0.236176 2.1:+13968824 MS.gene35708:CDS
AACCATTCTTGTTTAAATTC+TGG 0.253368 2.1:-13966978 None:intergenic
CTTATTGTTGGCTTACCAAT+TGG 0.259289 2.1:+13968885 MS.gene35708:CDS
AGTGCCATGCTTAAGCTCTT+AGG 0.270075 2.1:+13969339 MS.gene35708:CDS
AAGATATTAATACAGCAATT+TGG 0.270520 2.1:+13968182 MS.gene35708:CDS
TTGCTTTCTCATGTGAATCT+TGG 0.274164 2.1:+13966062 MS.gene35708:CDS
TCTTTGGTAAAATCCAATTC+AGG 0.284230 2.1:+13968852 MS.gene35708:CDS
AGCTTCCAAAAGACCATAAA+AGG 0.292008 2.1:-13966853 None:intergenic
CTTTATGCAGTACATAATAA+AGG 0.297679 2.1:+13967949 MS.gene35708:intron
CTGCATATTCTCCCTCAAAT+TGG 0.301654 2.1:-13967164 None:intergenic
TTGTTTGCTAGGGGTAAATA+TGG 0.302310 2.1:+13969627 MS.gene35708:CDS
TGTATCTAGTAGTATGTTAT+TGG 0.305072 2.1:+13969589 MS.gene35708:CDS
AACAAAGAAGAGAAAATAAA+AGG 0.305339 2.1:-13965988 None:intergenic
GCTTGTTATGTTTCTGATGA+TGG 0.315570 2.1:+13966816 MS.gene35708:CDS
AAGACGGTTTGGATATGTTT+TGG 0.323944 2.1:-13966137 None:intergenic
TATCCTGATGAAATTCAATA+TGG 0.325981 2.1:+13968046 MS.gene35708:CDS
CCTGTTATAGGTACCCTCTT+TGG 0.329571 2.1:+13968836 MS.gene35708:CDS
GGACTTCAAGGACCTTTCTA+TGG 0.332996 2.1:+13967980 MS.gene35708:CDS
TTCTGGTGAATCTTCACTAT+TGG 0.337945 2.1:-13966961 None:intergenic
AAAGCGTTGACAGGTTATAT+TGG 0.339961 2.1:+13967437 MS.gene35708:intron
TTATTGTTGGCTTACCAATT+GGG 0.340053 2.1:+13968886 MS.gene35708:CDS
TCAGATTGTGGATATGAATA+TGG 0.340911 2.1:+13968311 MS.gene35708:CDS
GGGCAGGCTTGTCTTATTGT+TGG 0.341388 2.1:+13968873 MS.gene35708:CDS
AAGACAAGCCTGCCCTGAAT+TGG 0.353258 2.1:-13968865 None:intergenic
CAGTCTACGTTCAACATAAA+AGG 0.353647 2.1:-13967687 None:intergenic
TGCAATTAGCAGCTCATAAT+GGG 0.360054 2.1:+13969532 MS.gene35708:CDS
TACCAATTGGGGTCTGCGTT+CGG 0.380901 2.1:+13968898 MS.gene35708:CDS
GTGCAATTAGCAGCTCATAA+TGG 0.389585 2.1:+13969531 MS.gene35708:CDS
CACCAGAATTTAAACAAGAA+TGG 0.390854 2.1:+13966976 MS.gene35708:CDS
GCCTTCATGGGATGCGCTCC+CGG 0.398885 2.1:+13968737 MS.gene35708:CDS
CATAGCATGTTGAATAATCT+TGG 0.402560 2.1:-13967730 None:intergenic
TGGCACTTGTTGGGGTAAAC+AGG 0.403166 2.1:+13968331 MS.gene35708:CDS
CATATCCACAATCTGATACT+TGG 0.404400 2.1:-13968304 None:intergenic
CTTCCATATTGAATTTCATC+AGG 0.404640 2.1:-13968049 None:intergenic
GATTGCTTTATCAAGAAGAT+TGG 0.407463 2.1:-13968282 None:intergenic
ACCGGAGCCAACAGCCTTCA+TGG 0.407960 2.1:+13968724 MS.gene35708:CDS
TAATTCCATCATAAAATTGT+TGG 0.409034 2.1:-13967806 None:intergenic
TTCAACTTCATTCCAATTTG+AGG 0.413057 2.1:+13967152 MS.gene35708:CDS
CCCATGAAGGCTGTTGGCTC+CGG 0.414417 2.1:-13968725 None:intergenic
CCAAAGAGGGTACCTATAAC+AGG 0.415661 2.1:-13968836 None:intergenic
GTTGTGCCAGCCACAAAAGC+TGG 0.417563 2.1:-13969462 None:intergenic
TCTAACCTTAGGAAAGATAC+TGG 0.419948 2.1:-13968972 None:intergenic
AATCTTGGTTCACTTATACT+TGG 0.420205 2.1:+13966077 MS.gene35708:CDS
GAAATTCAATATGGAAGAAA+AGG 0.424433 2.1:+13968055 MS.gene35708:CDS
TTTATGCAGTACATAATAAA+GGG 0.424631 2.1:+13967950 MS.gene35708:intron
AAGAAGTGCTGACTTGAAAA+TGG 0.427224 2.1:-13969664 None:intergenic
GACCGAACGCAGACCCCAAT+TGG 0.428493 2.1:-13968900 None:intergenic
TATTCCAGGGACTTGGGCTA+TGG 0.429398 2.1:+13969175 MS.gene35708:intron
CAACAAAAGAGATGGTCTTC+AGG 0.429438 2.1:+13968782 MS.gene35708:CDS
GTGCCATGCTTAAGCTCTTA+GGG 0.430274 2.1:+13969340 MS.gene35708:CDS
GACTTGAAAATGGTAGATAA+TGG 0.432424 2.1:-13969654 None:intergenic
TCAACTTCATTCCAATTTGA+GGG 0.436853 2.1:+13967153 MS.gene35708:CDS
TACCGTTGAAGAAGACGGTT+TGG 0.445224 2.1:-13966148 None:intergenic
TTGTAATTGTGTTCGTACTT+TGG 0.447431 2.1:-13967522 None:intergenic
TGAATATGCAAAGAAAAGGT+TGG 0.448456 2.1:+13968684 MS.gene35708:CDS
GGGAGTGATAATTCAATTGA+TGG 0.450914 2.1:+13968248 MS.gene35708:CDS
CAATAAGATCAACAAGTGTA+TGG 0.456139 2.1:+13969301 MS.gene35708:CDS
AAATCATTCAAGTATAGTTA+AGG 0.459304 2.1:+13967209 MS.gene35708:CDS
TCAATGGGTGGCTTCATTTG+AGG 0.460948 2.1:+13967848 MS.gene35708:CDS
AAGGGCATGGGAGGACTTCA+AGG 0.461364 2.1:+13967968 MS.gene35708:CDS
GGTAACAGCAGGACTCCATT+TGG 0.463280 2.1:-13966116 None:intergenic
TTTGAAAGGGTTGTTTGCTA+GGG 0.474486 2.1:+13969617 MS.gene35708:CDS
TTGTGGTTCTCAACACCAAA+TGG 0.475645 2.1:+13966101 MS.gene35708:CDS
TGTCAATTGCACAAGCAAAA+TGG 0.479362 2.1:-13969484 None:intergenic
CATAGAAGAAATGCTATGTA+TGG 0.480339 2.1:+13968019 MS.gene35708:CDS
GCCACCCATTGATTTCCAAA+AGG 0.480343 2.1:-13967837 None:intergenic
TGTTTGCTAGGGGTAAATAT+GGG 0.481543 2.1:+13969628 MS.gene35708:CDS
GATATGAATATGGCACTTGT+TGG 0.481660 2.1:+13968321 MS.gene35708:CDS
ATGATTGGTGGTTCTAGAAC+AGG 0.483104 2.1:-13966738 None:intergenic
CTACAAGAGTATCTATCAAA+AGG 0.485019 2.1:+13969237 MS.gene35708:CDS
GTTCACTTATACTTGGATTG+TGG 0.488045 2.1:+13966084 MS.gene35708:CDS
TTTGGAAACATCAGATGGGT+TGG 0.489093 2.1:+13968624 MS.gene35708:intron
CAAAAGGAAAGTCCAACTTC+TGG 0.490074 2.1:+13969390 MS.gene35708:CDS
CATTGTAGTGAGTAATCCTC+CGG 0.490307 2.1:-13968756 None:intergenic
GTGTTTGTTCCTCCATAGAA+AGG 0.493634 2.1:-13967992 None:intergenic
TAACAAGCTAGCTTATTAGC+TGG 0.493726 2.1:-13966801 None:intergenic
TACCAACACATTCATAGCTC+CGG 0.494183 2.1:-13967547 None:intergenic
AATTTGTAGACAAGAGTCTC+AGG 0.495070 2.1:+13967648 MS.gene35708:intron
CCACCCATTGATTTCCAAAA+GGG 0.496575 2.1:-13967836 None:intergenic
AGTCTTTGAAGTAACACAAA+AGG 0.498554 2.1:+13969374 MS.gene35708:CDS
ATATCAGAAGATGTACCAAC+TGG 0.500267 2.1:+13968659 MS.gene35708:CDS
CTTTGGTAAAATCCAATTCA+GGG 0.504422 2.1:+13968853 MS.gene35708:CDS
TGATTATGCAATATGCAACT+AGG 0.506316 2.1:-13968943 None:intergenic
AACAATGATAGTCTTTCTGA+TGG 0.507865 2.1:+13967462 MS.gene35708:CDS
TATTGTTGGCTTACCAATTG+GGG 0.508021 2.1:+13968887 MS.gene35708:CDS
CATAGCATTTCTTCTATGAA+AGG 0.512849 2.1:-13968014 None:intergenic
ATATGAATATGGCACTTGTT+GGG 0.515313 2.1:+13968322 MS.gene35708:CDS
TCTTCAGCAGCACCAGAAGT+TGG 0.518813 2.1:-13969402 None:intergenic
ATATTATACTTCTTACAGAA+AGG 0.520036 2.1:-13966900 None:intergenic
GCAGTACATAATAAAGGGCA+TGG 0.521471 2.1:+13967955 MS.gene35708:intron
AATGGGAATGGATGTGGACT+AGG 0.528735 2.1:+13969549 MS.gene35708:CDS
GGTAAAATCCAATTCAGGGC+AGG 0.530866 2.1:+13968857 MS.gene35708:CDS
CTTTGCATATTCAATCCAGT+TGG 0.535136 2.1:-13968674 None:intergenic
CAACACCAGTATCTTTCCTA+AGG 0.536327 2.1:+13968967 MS.gene35708:CDS
GCGCATCCCATGAAGGCTGT+TGG 0.541703 2.1:-13968731 None:intergenic
TTGTGCCAGCCACAAAAGCT+GGG 0.542281 2.1:-13969461 None:intergenic
GGATTGAATATGCAAAGAAA+AGG 0.542964 2.1:+13968680 MS.gene35708:CDS
TGCTGATGGAGAAGAAAATA+CGG 0.543278 2.1:-13966012 None:intergenic
GCTCATAATGGGAATGGATG+TGG 0.549004 2.1:+13969543 MS.gene35708:CDS
ACAGTGTTCAATGTGATGAT+TGG 0.552842 2.1:-13966753 None:intergenic
CCGGAGCCAACAGCCTTCAT+GGG 0.552952 2.1:+13968725 MS.gene35708:CDS
GCTTTATCAAGAAGATTGGA+AGG 0.553518 2.1:-13968278 None:intergenic
TACGAACACAATTACAAAGC+CGG 0.554654 2.1:+13967528 MS.gene35708:CDS
TTAGCAGCTCATAATGGGAA+TGG 0.559297 2.1:+13969537 MS.gene35708:CDS
ACACGCGGAAGCTCATTCTC+AGG 0.559771 2.1:-13966690 None:intergenic
TCCGGGAGCGCATCCCATGA+AGG 0.570436 2.1:-13968738 None:intergenic
TTGAAAGGGTTGTTTGCTAG+GGG 0.570518 2.1:+13969618 MS.gene35708:CDS
GATTATGCAATATGCAACTA+GGG 0.573235 2.1:-13968942 None:intergenic
ATCCAAACCGTCTTCTTCAA+CGG 0.576571 2.1:+13966146 MS.gene35708:CDS
TGAGAATGAGCTTCCGCGTG+TGG 0.580303 2.1:+13966692 MS.gene35708:CDS
GCAATCCAAGTATCAGATTG+TGG 0.581850 2.1:+13968299 MS.gene35708:CDS
GTGTTCAATGTGATGATTGG+TGG 0.582750 2.1:-13966750 None:intergenic
TACATAATAAAGGGCATGGG+AGG 0.589666 2.1:+13967959 MS.gene35708:CDS
GTTCAACATAAAAGGCGCAT+TGG 0.592570 2.1:-13967679 None:intergenic
GCTGAAGATGATGCAAATGC+TGG 0.597342 2.1:+13969417 MS.gene35708:CDS
CTAGATATGTAGACTAAGTG+AGG 0.598571 2.1:-13967489 None:intergenic
AAGAAACCATGGCAGTGTGA+AGG 0.604260 2.1:-13966041 None:intergenic
ATAAAAGGATTAAAATCAAG+AGG 0.605462 2.1:-13965973 None:intergenic
TTACATACCGTTGAAGAAGA+CGG 0.605834 2.1:-13966153 None:intergenic
CAGTACATAATAAAGGGCAT+GGG 0.608875 2.1:+13967956 MS.gene35708:intron
ACAAAACCTTCACACTGCCA+TGG 0.609482 2.1:+13966035 MS.gene35708:CDS
CAATGATCCAACAAAAGAGA+TGG 0.612047 2.1:+13968774 MS.gene35708:CDS
CTTCAAGGACCTTTCTATGG+AGG 0.612281 2.1:+13967983 MS.gene35708:CDS
AGCCGGAGCTATGAATGTGT+TGG 0.613715 2.1:+13967545 MS.gene35708:CDS
TATGAATATGGCACTTGTTG+GGG 0.620443 2.1:+13968323 MS.gene35708:CDS
CATGAGAAAGCAAGAAACCA+TGG 0.624485 2.1:-13966052 None:intergenic
ATTGTAGTGAGTAATCCTCC+GGG 0.635051 2.1:-13968755 None:intergenic
TTCATGGGATGCGCTCCCGG+AGG 0.649760 2.1:+13968740 MS.gene35708:CDS
TATCCCTAAGAGCTTAAGCA+TGG 0.651527 2.1:-13969343 None:intergenic
TGTGCCAGCCACAAAAGCTG+GGG 0.654114 2.1:-13969460 None:intergenic
GAGATCAGAATGTTGTACAC+CGG 0.663139 2.1:+13968706 MS.gene35708:CDS
AAGATGATGCAAATGCTGGT+AGG 0.683909 2.1:+13969421 MS.gene35708:CDS
GTCACAAACAAATCCACACG+CGG 0.716627 2.1:-13966705 None:intergenic
GTTGAACGTAGACTGTGACA+TGG 0.762585 2.1:+13967695 MS.gene35708:CDS
TGCTAAAGAAGACAACAGTG+AGG 0.786213 2.1:-13968805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAGTTAAAATAAGT+AGG - chr2.1:13966565-13966584 None:intergenic 10.0%
!! AGTTAATTAACAAAGTTTAA+TGG - chr2.1:13968596-13968615 None:intergenic 15.0%
!! TAAATAACACTTGAAAATAA+TGG + chr2.1:13966441-13966460 MS.gene35708:intron 15.0%
!!! AAATCTAATTCTTAGTTTTT+TGG + chr2.1:13967599-13967618 MS.gene35708:intron 15.0%
!!! AAATTTTGTTAATGAGAAAA+CGG + chr2.1:13968403-13968422 MS.gene35708:intron 15.0%
!!! AATCTAATTCTTAGTTTTTT+GGG + chr2.1:13967600-13967619 MS.gene35708:intron 15.0%
!!! GTAAAACTATTTTATATTGT+CGG + chr2.1:13968563-13968582 MS.gene35708:intron 15.0%
!! AAATCATTCAAGTATAGTTA+AGG + chr2.1:13967209-13967228 MS.gene35708:CDS 20.0%
!! AACAAAGAAGAGAAAATAAA+AGG - chr2.1:13965991-13966010 None:intergenic 20.0%
!! AACTTTGTTAATTAACTTTG+AGG + chr2.1:13968599-13968618 MS.gene35708:intron 20.0%
!! AAGATATTAATACAGCAATT+TGG + chr2.1:13968182-13968201 MS.gene35708:CDS 20.0%
!! ACTTCAGAAAAATATCTAAA+AGG - chr2.1:13966939-13966958 None:intergenic 20.0%
!! ATAAAAGGATTAAAATCAAG+AGG - chr2.1:13965976-13965995 None:intergenic 20.0%
!! ATATTATACTTCTTACAGAA+AGG - chr2.1:13966903-13966922 None:intergenic 20.0%
!! TAAAATTAACTGCAAAATGT+TGG - chr2.1:13968479-13968498 None:intergenic 20.0%
!! TAATTCCATCATAAAATTGT+TGG - chr2.1:13967809-13967828 None:intergenic 20.0%
!! TACATTCAATAGTTAGTTAA+TGG - chr2.1:13966538-13966557 None:intergenic 20.0%
!! TCAATTAAGAAAGATAAGAA+TGG - chr2.1:13967628-13967647 None:intergenic 20.0%
!! TTTATGCAGTACATAATAAA+GGG + chr2.1:13967950-13967969 MS.gene35708:intron 20.0%
!!! AAGGATTATCATTAAGATTT+TGG + chr2.1:13969256-13969275 MS.gene35708:CDS 20.0%
!!! AATTTTGTTAATGAGAAAAC+GGG + chr2.1:13968404-13968423 MS.gene35708:intron 20.0%
!!! ACATGTAATCCTTATTTTTT+GGG + chr2.1:13967270-13967289 MS.gene35708:intron 20.0%
!!! ATATACTACTTTTTTATTCC+AGG + chr2.1:13969161-13969180 MS.gene35708:intron 20.0%
!!! ATTAAATATTGAGGGTTTTT+TGG + chr2.1:13969026-13969045 MS.gene35708:intron 20.0%
!!! CAAGTTGAATTAAATATTGA+GGG + chr2.1:13969018-13969037 MS.gene35708:intron 20.0%
!!! TACATGTAATCCTTATTTTT+TGG + chr2.1:13967269-13967288 MS.gene35708:intron 20.0%
!!! TATACTACTTTTTTATTCCA+GGG + chr2.1:13969162-13969181 MS.gene35708:intron 20.0%
!!! TATTTTCAAGTGTTATTTAG+TGG - chr2.1:13966440-13966459 None:intergenic 20.0%
!!! TGTGTTTTTTAGTATCATAT+AGG - chr2.1:13968128-13968147 None:intergenic 20.0%
!!! TTAATTAACTTTGAGGATTT+TGG + chr2.1:13968606-13968625 MS.gene35708:intron 20.0%
!!! TTAGATATGTCTAGAAATTT+TGG - chr2.1:13967345-13967364 None:intergenic 20.0%
!!! TTATGACATAAGAAGTATAA+TGG + chr2.1:13967059-13967078 MS.gene35708:intron 20.0%
! ACAAGAATGGTTAAAAATGA+AGG + chr2.1:13966989-13967008 MS.gene35708:CDS 25.0%
! CTTTATGCAGTACATAATAA+AGG + chr2.1:13967949-13967968 MS.gene35708:intron 25.0%
! GAAATTCAATATGGAAGAAA+AGG + chr2.1:13968055-13968074 MS.gene35708:CDS 25.0%
! GACTATTTGTCAGATATAAT+TGG + chr2.1:13969091-13969110 MS.gene35708:intron 25.0%
! TAGATCACAAAAAGAGTTAA+AGG - chr2.1:13969204-13969223 None:intergenic 25.0%
! TATCCTGATGAAATTCAATA+TGG + chr2.1:13968046-13968065 MS.gene35708:CDS 25.0%
! TATGTAGTTAAGATGCTTAA+TGG + chr2.1:13966388-13966407 MS.gene35708:intron 25.0%
! TGTAAACACTAAATTGTAAG+AGG - chr2.1:13967908-13967927 None:intergenic 25.0%
! TGTATCTAGTAGTATGTTAT+TGG + chr2.1:13969589-13969608 MS.gene35708:CDS 25.0%
! TTCCTCTCTATGAAAAAATT+TGG + chr2.1:13965921-13965940 MS.gene35708:CDS 25.0%
!! AACCATTCTTGTTTAAATTC+TGG - chr2.1:13966981-13967000 None:intergenic 25.0%
!! CACACTTTTGTATCTTTATT+AGG + chr2.1:13968146-13968165 MS.gene35708:intron 25.0%
!! GATTATCATTAAGATTTTGG+TGG + chr2.1:13969259-13969278 MS.gene35708:CDS 25.0%
!! GCAAGTTGAATTAAATATTG+AGG + chr2.1:13969017-13969036 MS.gene35708:intron 25.0%
!! TAGTGTAAAACTAGTTTACA+TGG - chr2.1:13968441-13968460 None:intergenic 25.0%
!! TTGCAGTTAATTTTACATTG+CGG + chr2.1:13968484-13968503 MS.gene35708:intron 25.0%
!! TTTTACCTTTTATGGTCTTT+TGG + chr2.1:13966848-13966867 MS.gene35708:CDS 25.0%
!!! ATCCAAATTTTTTCATAGAG+AGG - chr2.1:13965926-13965945 None:intergenic 25.0%
!!! ATTTTGATGGATTCTAAGAA+TGG + chr2.1:13967756-13967775 MS.gene35708:CDS 25.0%
!!! CATGTAATCCTTATTTTTTG+GGG + chr2.1:13967271-13967290 MS.gene35708:intron 25.0%
!!! TAGAAATTTTGGTGAAAATG+CGG - chr2.1:13967334-13967353 None:intergenic 25.0%
!!! TGTTCTGTTTTTACCTTTTA+TGG + chr2.1:13966840-13966859 MS.gene35708:CDS 25.0%
!!! TTCCAAATTTGCTAAGTTTT+GGG + chr2.1:13966875-13966894 MS.gene35708:CDS 25.0%
AACAATGATAGTCTTTCTGA+TGG + chr2.1:13967462-13967481 MS.gene35708:CDS 30.0%
AACCCAAAACTTAGCAAATT+TGG - chr2.1:13966880-13966899 None:intergenic 30.0%
AATCTTGGTTCACTTATACT+TGG + chr2.1:13966077-13966096 MS.gene35708:CDS 30.0%
ACATGTATATCAATCATTGC+AGG - chr2.1:13967033-13967052 None:intergenic 30.0%
ATATGAATATGGCACTTGTT+GGG + chr2.1:13968322-13968341 MS.gene35708:CDS 30.0%
CAATAAGATCAACAAGTGTA+TGG + chr2.1:13969301-13969320 MS.gene35708:CDS 30.0%
CACCAGAATTTAAACAAGAA+TGG + chr2.1:13966976-13966995 MS.gene35708:CDS 30.0%
CATAGAAGAAATGCTATGTA+TGG + chr2.1:13968019-13968038 MS.gene35708:CDS 30.0%
CATAGCATGTTGAATAATCT+TGG - chr2.1:13967733-13967752 None:intergenic 30.0%
CATAGCATTTCTTCTATGAA+AGG - chr2.1:13968017-13968036 None:intergenic 30.0%
CATGTATATCAATCATTGCA+GGG - chr2.1:13967032-13967051 None:intergenic 30.0%
CTTCCATATTGAATTTCATC+AGG - chr2.1:13968052-13968071 None:intergenic 30.0%
CTTTGGTAAAATCCAATTCA+GGG + chr2.1:13968853-13968872 MS.gene35708:CDS 30.0%
GACTTGAAAATGGTAGATAA+TGG - chr2.1:13969657-13969676 None:intergenic 30.0%
GATTATGCAATATGCAACTA+GGG - chr2.1:13968945-13968964 None:intergenic 30.0%
GATTGCTTTATCAAGAAGAT+TGG - chr2.1:13968285-13968304 None:intergenic 30.0%
GGATTGAATATGCAAAGAAA+AGG + chr2.1:13968680-13968699 MS.gene35708:CDS 30.0%
TATCGCAAAAATCTAACCTT+AGG - chr2.1:13968986-13969005 None:intergenic 30.0%
TCAACAAGTGTATGGTTTAT+TGG + chr2.1:13969309-13969328 MS.gene35708:CDS 30.0%
TCAACTTCATTCCAATTTGA+GGG + chr2.1:13967153-13967172 MS.gene35708:CDS 30.0%
TCAGATTGTGGATATGAATA+TGG + chr2.1:13968311-13968330 MS.gene35708:CDS 30.0%
TCTTTGGTAAAATCCAATTC+AGG + chr2.1:13968852-13968871 MS.gene35708:CDS 30.0%
TGAATATGCAAAGAAAAGGT+TGG + chr2.1:13968684-13968703 MS.gene35708:CDS 30.0%
TGATTATGCAATATGCAACT+AGG - chr2.1:13968946-13968965 None:intergenic 30.0%
TTCAACTTCATTCCAATTTG+AGG + chr2.1:13967152-13967171 MS.gene35708:CDS 30.0%
TTGTAATTGTGTTCGTACTT+TGG - chr2.1:13967525-13967544 None:intergenic 30.0%
! AGATGCTTAATGGATATATG+AGG + chr2.1:13966398-13966417 MS.gene35708:intron 30.0%
! GAATTGGATTTTACCAAAGA+GGG - chr2.1:13968852-13968871 None:intergenic 30.0%
! TGAATTGGATTTTACCAAAG+AGG - chr2.1:13968853-13968872 None:intergenic 30.0%
! TGCTTCCAACAATTTTATGA+TGG + chr2.1:13967801-13967820 MS.gene35708:CDS 30.0%
!! ACGCTTTATGTTAGTCTTAT+TGG - chr2.1:13967424-13967443 None:intergenic 30.0%
!! AGTCTTTGAAGTAACACAAA+AGG + chr2.1:13969374-13969393 MS.gene35708:CDS 30.0%
!! CTACAAGAGTATCTATCAAA+AGG + chr2.1:13969237-13969256 MS.gene35708:CDS 30.0%
!! GTTTGCGAAAACTTTTTAAG+TGG - chr2.1:13966598-13966617 None:intergenic 30.0%
!! TTATTGTTGGCTTACCAATT+GGG + chr2.1:13968886-13968905 MS.gene35708:CDS 30.0%
!!! ACTTGTTGTTAAGATTTTGG+GGG + chr2.1:13969509-13969528 MS.gene35708:CDS 30.0%
!!! AGCACTTGTTGTTAAGATTT+TGG + chr2.1:13969506-13969525 MS.gene35708:CDS 30.0%
!!! CACTTGTTGTTAAGATTTTG+GGG + chr2.1:13969508-13969527 MS.gene35708:CDS 30.0%
!!! CTTCCAAATTTGCTAAGTTT+TGG + chr2.1:13966874-13966893 MS.gene35708:CDS 30.0%
!!! GCACTTGTTGTTAAGATTTT+GGG + chr2.1:13969507-13969526 MS.gene35708:CDS 30.0%
!!! GGTTTTTTGGATTAGTCTAT+TGG + chr2.1:13969039-13969058 MS.gene35708:intron 30.0%
!!! GTTATTGGCCATTTTTGAAA+GGG + chr2.1:13969604-13969623 MS.gene35708:CDS 30.0%
!!! TGTTATTGGCCATTTTTGAA+AGG + chr2.1:13969603-13969622 MS.gene35708:CDS 30.0%
AATTTGTAGACAAGAGTCTC+AGG + chr2.1:13967648-13967667 MS.gene35708:intron 35.0%
ACAGTGTTCAATGTGATGAT+TGG - chr2.1:13966756-13966775 None:intergenic 35.0%
AGCTTCCAAAAGACCATAAA+AGG - chr2.1:13966856-13966875 None:intergenic 35.0%
ATATCAGAAGATGTACCAAC+TGG + chr2.1:13968659-13968678 MS.gene35708:CDS 35.0%
ATTAACTACGAACTCGAAAG+TGG - chr2.1:13966470-13966489 None:intergenic 35.0%
CAAATTCAAGCATGAGTACT+TGG - chr2.1:13967395-13967414 None:intergenic 35.0%
CAATGATCCAACAAAAGAGA+TGG + chr2.1:13968774-13968793 MS.gene35708:CDS 35.0%
CAGTCTACGTTCAACATAAA+AGG - chr2.1:13967690-13967709 None:intergenic 35.0%
CATATCCACAATCTGATACT+TGG - chr2.1:13968307-13968326 None:intergenic 35.0%
CTAGATATGTAGACTAAGTG+AGG - chr2.1:13967492-13967511 None:intergenic 35.0%
CTTTGCATATTCAATCCAGT+TGG - chr2.1:13968677-13968696 None:intergenic 35.0%
GATATGAATATGGCACTTGT+TGG + chr2.1:13968321-13968340 MS.gene35708:CDS 35.0%
GCAAAATGTTGGATTCTCAT+TGG - chr2.1:13968468-13968487 None:intergenic 35.0%
GCAAACAACCCTTTCAAAAA+TGG - chr2.1:13969615-13969634 None:intergenic 35.0%
GCTTTATCAAGAAGATTGGA+AGG - chr2.1:13968281-13968300 None:intergenic 35.0%
GGGAGTGATAATTCAATTGA+TGG + chr2.1:13968248-13968267 MS.gene35708:CDS 35.0%
GTTCACTTATACTTGGATTG+TGG + chr2.1:13966084-13966103 MS.gene35708:CDS 35.0%
TACGAACACAATTACAAAGC+CGG + chr2.1:13967528-13967547 MS.gene35708:CDS 35.0%
TCTAACCTTAGGAAAGATAC+TGG - chr2.1:13968975-13968994 None:intergenic 35.0%
TGCAATTAGCAGCTCATAAT+GGG + chr2.1:13969532-13969551 MS.gene35708:CDS 35.0%
TGCTGATGGAGAAGAAAATA+CGG - chr2.1:13966015-13966034 None:intergenic 35.0%
TGTCAATTGCACAAGCAAAA+TGG - chr2.1:13969487-13969506 None:intergenic 35.0%
TTACATACCGTTGAAGAAGA+CGG - chr2.1:13966156-13966175 None:intergenic 35.0%
TTCTGGTGAATCTTCACTAT+TGG - chr2.1:13966964-13966983 None:intergenic 35.0%
TTGCTTTCTCATGTGAATCT+TGG + chr2.1:13966062-13966081 MS.gene35708:CDS 35.0%
! ACATGCTATGTGCATTTTGA+TGG + chr2.1:13967743-13967762 MS.gene35708:CDS 35.0%
! CAGTAACACATGCTTTTGAA+GGG + chr2.1:13968228-13968247 MS.gene35708:CDS 35.0%
! CAGTACATAATAAAGGGCAT+GGG + chr2.1:13967956-13967975 MS.gene35708:intron 35.0%
! CATAGAGAGGAAGATTTTCT+TGG - chr2.1:13965913-13965932 None:intergenic 35.0%
! GGAATTAAAGATGACCCTTT+TGG + chr2.1:13967822-13967841 MS.gene35708:CDS 35.0%
! TAACAAGCTAGCTTATTAGC+TGG - chr2.1:13966804-13966823 None:intergenic 35.0%
! TATGAATATGGCACTTGTTG+GGG + chr2.1:13968323-13968342 MS.gene35708:CDS 35.0%
! TCAGTAACACATGCTTTTGA+AGG + chr2.1:13968227-13968246 MS.gene35708:CDS 35.0%
! TCTTGCTAATTAGTCTCTCA+AGG + chr2.1:13966624-13966643 MS.gene35708:intron 35.0%
! TGTTTGCTAGGGGTAAATAT+GGG + chr2.1:13969628-13969647 MS.gene35708:CDS 35.0%
! TTGTTTGCTAGGGGTAAATA+TGG + chr2.1:13969627-13969646 MS.gene35708:CDS 35.0%
! TTTGAAAGGGTTGTTTGCTA+GGG + chr2.1:13969617-13969636 MS.gene35708:CDS 35.0%
!! AAAGCGTTGACAGGTTATAT+TGG + chr2.1:13967437-13967456 MS.gene35708:intron 35.0%
!! AAGAAGTGCTGACTTGAAAA+TGG - chr2.1:13969667-13969686 None:intergenic 35.0%
!! AAGACGGTTTGGATATGTTT+TGG - chr2.1:13966140-13966159 None:intergenic 35.0%
!! AGGATTTTGGAAACATCAGA+TGG + chr2.1:13968619-13968638 MS.gene35708:intron 35.0%
!! ATGACCCTTTTGGAAATCAA+TGG + chr2.1:13967832-13967851 MS.gene35708:CDS 35.0%
!! CTTATTGTTGGCTTACCAAT+TGG + chr2.1:13968885-13968904 MS.gene35708:CDS 35.0%
!! GCTTGTTATGTTTCTGATGA+TGG + chr2.1:13966816-13966835 MS.gene35708:CDS 35.0%
!! GGATTTTGGAAACATCAGAT+GGG + chr2.1:13968620-13968639 MS.gene35708:intron 35.0%
!! TATTGTTGGCTTACCAATTG+GGG + chr2.1:13968887-13968906 MS.gene35708:CDS 35.0%
!! TGACCCTTTTGGAAATCAAT+GGG + chr2.1:13967833-13967852 MS.gene35708:CDS 35.0%
!! TTGTCTTTTGTGTTTGTTGC+AGG + chr2.1:13967083-13967102 MS.gene35708:intron 35.0%
!! TTTTGAAAGGGTTGTTTGCT+AGG + chr2.1:13969616-13969635 MS.gene35708:CDS 35.0%
!!! ACTTTTTTATTCCAGGGACT+TGG + chr2.1:13969168-13969187 MS.gene35708:intron 35.0%
!!! CTTTTTTATTCCAGGGACTT+GGG + chr2.1:13969169-13969188 MS.gene35708:intron 35.0%
!!! GCGAAAACTTTTTAAGTGGT+TGG - chr2.1:13966594-13966613 None:intergenic 35.0%
!!! GTAATCCTTATTTTTTGGGG+AGG + chr2.1:13967274-13967293 MS.gene35708:intron 35.0%
AAGATGATGCAAATGCTGGT+AGG + chr2.1:13969421-13969440 MS.gene35708:CDS 40.0%
AGCAAGCATTCTCCTGTTAT+AGG + chr2.1:13968824-13968843 MS.gene35708:CDS 40.0%
ATCCAAACCGTCTTCTTCAA+CGG + chr2.1:13966146-13966165 MS.gene35708:CDS 40.0%
ATTGTAGTGAGTAATCCTCC+GGG - chr2.1:13968758-13968777 None:intergenic 40.0%
CAAAAGGAAAGTCCAACTTC+TGG + chr2.1:13969390-13969409 MS.gene35708:CDS 40.0%
CAACAAAAGAGATGGTCTTC+AGG + chr2.1:13968782-13968801 MS.gene35708:CDS 40.0%
CAACACCAGTATCTTTCCTA+AGG + chr2.1:13968967-13968986 MS.gene35708:CDS 40.0%
CATGAGAAAGCAAGAAACCA+TGG - chr2.1:13966055-13966074 None:intergenic 40.0%
CATTGTAGTGAGTAATCCTC+CGG - chr2.1:13968759-13968778 None:intergenic 40.0%
CTGCATATTCTCCCTCAAAT+TGG - chr2.1:13967167-13967186 None:intergenic 40.0%
GAAATCAGTGCAAGACTTCA+TGG - chr2.1:13966339-13966358 None:intergenic 40.0%
GAGATCAGAATGTTGTACAC+CGG + chr2.1:13968706-13968725 MS.gene35708:CDS 40.0%
GCAATCCAAGTATCAGATTG+TGG + chr2.1:13968299-13968318 MS.gene35708:CDS 40.0%
GCAGTACATAATAAAGGGCA+TGG + chr2.1:13967955-13967974 MS.gene35708:intron 40.0%
GGTTATAAAGTTGCCTTGTG+TGG + chr2.1:13968505-13968524 MS.gene35708:intron 40.0%
GTCAACCTCCCCAAAAAATA+AGG - chr2.1:13967282-13967301 None:intergenic 40.0%
GTCTATTGGAGCTTATCTAC+TGG + chr2.1:13969053-13969072 MS.gene35708:intron 40.0%
GTGCAATTAGCAGCTCATAA+TGG + chr2.1:13969531-13969550 MS.gene35708:CDS 40.0%
GTGTTCAATGTGATGATTGG+TGG - chr2.1:13966753-13966772 None:intergenic 40.0%
GTGTTTGTTCCTCCATAGAA+AGG - chr2.1:13967995-13968014 None:intergenic 40.0%
TACCAACACATTCATAGCTC+CGG - chr2.1:13967550-13967569 None:intergenic 40.0%
TATCCCTAAGAGCTTAAGCA+TGG - chr2.1:13969346-13969365 None:intergenic 40.0%
TGCTAAAGAAGACAACAGTG+AGG - chr2.1:13968808-13968827 None:intergenic 40.0%
TTGTGGTTCTCAACACCAAA+TGG + chr2.1:13966101-13966120 MS.gene35708:CDS 40.0%
TTTGGAAACATCAGATGGGT+TGG + chr2.1:13968624-13968643 MS.gene35708:intron 40.0%
! CTGAAGACCATCTCTTTTGT+TGG - chr2.1:13968784-13968803 None:intergenic 40.0%
! GAACACTGTTTTGTCTCTGT+TGG + chr2.1:13966767-13966786 MS.gene35708:CDS 40.0%
! GCGTCACATCTTCAATTTTG+TGG - chr2.1:13967128-13967147 None:intergenic 40.0%
! GTTCAACATAAAAGGCGCAT+TGG - chr2.1:13967682-13967701 None:intergenic 40.0%
! TACATAATAAAGGGCATGGG+AGG + chr2.1:13967959-13967978 MS.gene35708:CDS 40.0%
! TTAGCAGCTCATAATGGGAA+TGG + chr2.1:13969537-13969556 MS.gene35708:CDS 40.0%
! TTGAAAGGGTTGTTTGCTAG+GGG + chr2.1:13969618-13969637 MS.gene35708:CDS 40.0%
!! AGTTTGCTGTCGTTAGATGT+CGG + chr2.1:13968539-13968558 MS.gene35708:intron 40.0%
!! ATGATTGGTGGTTCTAGAAC+AGG - chr2.1:13966741-13966760 None:intergenic 40.0%
!! CATCAGATGGGTTGGTTATA+TGG + chr2.1:13968632-13968651 MS.gene35708:intron 40.0%
!! CCACCCATTGATTTCCAAAA+GGG - chr2.1:13967839-13967858 None:intergenic 40.0%
!! GACTAACATAAAGCGTTGAC+AGG + chr2.1:13967428-13967447 MS.gene35708:intron 40.0%
!!! GGATATGTTTTGGTAACAGC+AGG - chr2.1:13966130-13966149 None:intergenic 40.0%
!!! TGTGAAGGTTTTGTTGCTGA+TGG - chr2.1:13966029-13966048 None:intergenic 40.0%
AAGAAACCATGGCAGTGTGA+AGG - chr2.1:13966044-13966063 None:intergenic 45.0%
AATGGGAATGGATGTGGACT+AGG + chr2.1:13969549-13969568 MS.gene35708:CDS 45.0%
ACAAAACCTTCACACTGCCA+TGG + chr2.1:13966035-13966054 MS.gene35708:CDS 45.0%
AGTGCCATGCTTAAGCTCTT+AGG + chr2.1:13969339-13969358 MS.gene35708:CDS 45.0%
AGTTGCAGCGACATCAAGAT+CGG + chr2.1:13966257-13966276 MS.gene35708:intron 45.0%
ATTCTCAGGTACTCTAGCAG+GGG - chr2.1:13966679-13966698 None:intergenic 45.0%
CATTCTCAGGTACTCTAGCA+GGG - chr2.1:13966680-13966699 None:intergenic 45.0%
CCTGTTATAGGTACCCTCTT+TGG + chr2.1:13968836-13968855 MS.gene35708:CDS 45.0%
CGTTCATTGCTAGTCGATGT+AGG + chr2.1:13967368-13967387 MS.gene35708:intron 45.0%
CTTCAAAGACAGACCACACA+AGG - chr2.1:13968521-13968540 None:intergenic 45.0%
CTTCAAGGACCTTTCTATGG+AGG + chr2.1:13967983-13968002 MS.gene35708:CDS 45.0%
GCTGAAGATGATGCAAATGC+TGG + chr2.1:13969417-13969436 MS.gene35708:CDS 45.0%
GGACTTCAAGGACCTTTCTA+TGG + chr2.1:13967980-13967999 MS.gene35708:CDS 45.0%
GGTAAAATCCAATTCAGGGC+AGG + chr2.1:13968857-13968876 MS.gene35708:CDS 45.0%
GTCACAAACAAATCCACACG+CGG - chr2.1:13966708-13966727 None:intergenic 45.0%
GTGCCATGCTTAAGCTCTTA+GGG + chr2.1:13969340-13969359 MS.gene35708:CDS 45.0%
GTTGAACGTAGACTGTGACA+TGG + chr2.1:13967695-13967714 MS.gene35708:CDS 45.0%
TACCGTTGAAGAAGACGGTT+TGG - chr2.1:13966151-13966170 None:intergenic 45.0%
TCAATGGGTGGCTTCATTTG+AGG + chr2.1:13967848-13967867 MS.gene35708:CDS 45.0%
TCATTCTCAGGTACTCTAGC+AGG - chr2.1:13966681-13966700 None:intergenic 45.0%
TGTTGCAGTTTATGCTGCAG+TGG + chr2.1:13966298-13966317 MS.gene35708:intron 45.0%
! GCTCATAATGGGAATGGATG+TGG + chr2.1:13969543-13969562 MS.gene35708:CDS 45.0%
!! CCAAAGAGGGTACCTATAAC+AGG - chr2.1:13968839-13968858 None:intergenic 45.0%
!! CCCTTTTGGAAATCAATGGG+TGG + chr2.1:13967836-13967855 MS.gene35708:CDS 45.0%
!! GCCACCCATTGATTTCCAAA+AGG - chr2.1:13967840-13967859 None:intergenic 45.0%
AAGACAAGCCTGCCCTGAAT+TGG - chr2.1:13968868-13968887 None:intergenic 50.0%
AGCCGGAGCTATGAATGTGT+TGG + chr2.1:13967545-13967564 MS.gene35708:CDS 50.0%
GGTAACAGCAGGACTCCATT+TGG - chr2.1:13966119-13966138 None:intergenic 50.0%
TACCAATTGGGGTCTGCGTT+CGG + chr2.1:13968898-13968917 MS.gene35708:CDS 50.0%
TATTCCAGGGACTTGGGCTA+TGG + chr2.1:13969175-13969194 MS.gene35708:intron 50.0%
TCTTCAGCAGCACCAGAAGT+TGG - chr2.1:13969405-13969424 None:intergenic 50.0%
TGCAGTTTATGCTGCAGTGG+CGG + chr2.1:13966301-13966320 MS.gene35708:intron 50.0%
TGTGACCGACAAGAAAGACC+AGG + chr2.1:13967305-13967324 MS.gene35708:intron 50.0%
TTGGTGAAAATGCGGTGTCC+TGG - chr2.1:13967326-13967345 None:intergenic 50.0%
TTGTGCCAGCCACAAAAGCT+GGG - chr2.1:13969464-13969483 None:intergenic 50.0%
! GGGCAGGCTTGTCTTATTGT+TGG + chr2.1:13968873-13968892 MS.gene35708:CDS 50.0%
! GGTGTCCTGGTCTTTCTTGT+CGG - chr2.1:13967313-13967332 None:intergenic 50.0%
! TGGCACTTGTTGGGGTAAAC+AGG + chr2.1:13968331-13968350 MS.gene35708:CDS 50.0%
ACACGCGGAAGCTCATTCTC+AGG - chr2.1:13966693-13966712 None:intergenic 55.0%
GAATCCATAGCCCAAGTCCC+TGG - chr2.1:13969182-13969201 None:intergenic 55.0%
GCAGTTTATGCTGCAGTGGC+GGG + chr2.1:13966302-13966321 MS.gene35708:intron 55.0%
GTTGTGCCAGCCACAAAAGC+TGG - chr2.1:13969465-13969484 None:intergenic 55.0%
TGAGAATGAGCTTCCGCGTG+TGG + chr2.1:13966692-13966711 MS.gene35708:CDS 55.0%
TGTGCCAGCCACAAAAGCTG+GGG - chr2.1:13969463-13969482 None:intergenic 55.0%
! AAGGGCATGGGAGGACTTCA+AGG + chr2.1:13967968-13967987 MS.gene35708:CDS 55.0%
! TGACGAGTCCCCAGCTTTTG+TGG + chr2.1:13969452-13969471 MS.gene35708:CDS 55.0%
ACCGGAGCCAACAGCCTTCA+TGG + chr2.1:13968724-13968743 MS.gene35708:CDS 60.0%
CCGGAGCCAACAGCCTTCAT+GGG + chr2.1:13968725-13968744 MS.gene35708:CDS 60.0%
GACCGAACGCAGACCCCAAT+TGG - chr2.1:13968903-13968922 None:intergenic 60.0%
GCGCATCCCATGAAGGCTGT+TGG - chr2.1:13968734-13968753 None:intergenic 60.0%
! GAGTCCCCAGCTTTTGTGGC+TGG + chr2.1:13969456-13969475 MS.gene35708:CDS 60.0%
!! CCCATGAAGGCTGTTGGCTC+CGG - chr2.1:13968728-13968747 None:intergenic 60.0%
GCCTTCATGGGATGCGCTCC+CGG + chr2.1:13968737-13968756 MS.gene35708:CDS 65.0%
TTCATGGGATGCGCTCCCGG+AGG + chr2.1:13968740-13968759 MS.gene35708:CDS 65.0%
! TCCGGGAGCGCATCCCATGA+AGG - chr2.1:13968741-13968760 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 13965902 13969734 13965902 ID=MS.gene35708
chr2.1 mRNA 13965902 13969734 13965902 ID=MS.gene35708.t1;Parent=MS.gene35708
chr2.1 exon 13965902 13966167 13965902 ID=MS.gene35708.t1.exon1;Parent=MS.gene35708.t1
chr2.1 CDS 13965902 13966167 13965902 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13966686 13967010 13966686 ID=MS.gene35708.t1.exon2;Parent=MS.gene35708.t1
chr2.1 CDS 13966686 13967010 13966686 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13967105 13967230 13967105 ID=MS.gene35708.t1.exon3;Parent=MS.gene35708.t1
chr2.1 CDS 13967105 13967230 13967105 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13967450 13967566 13967450 ID=MS.gene35708.t1.exon4;Parent=MS.gene35708.t1
chr2.1 CDS 13967450 13967566 13967450 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13967657 13967869 13967657 ID=MS.gene35708.t1.exon5;Parent=MS.gene35708.t1
chr2.1 CDS 13967657 13967869 13967657 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13967959 13968076 13967959 ID=MS.gene35708.t1.exon6;Parent=MS.gene35708.t1
chr2.1 CDS 13967959 13968076 13967959 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13968168 13968352 13968168 ID=MS.gene35708.t1.exon7;Parent=MS.gene35708.t1
chr2.1 CDS 13968168 13968352 13968168 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13968638 13968988 13968638 ID=MS.gene35708.t1.exon8;Parent=MS.gene35708.t1
chr2.1 CDS 13968638 13968988 13968638 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
chr2.1 exon 13969183 13969734 13969183 ID=MS.gene35708.t1.exon9;Parent=MS.gene35708.t1
chr2.1 CDS 13969183 13969734 13969183 ID=cds.MS.gene35708.t1;Parent=MS.gene35708.t1
Gene Sequence

>MS.gene35708

ATGGTCAACCAAGAAAATCTTCCTCTCTATGAAAAAATTTGGATTAAACGCACACTTCAAAGAGCAATAGACCTCTTGATTTTAATCCTTTTATTTTCTCTTCTTTGTTACCGTATTTTCTTCTCCATCAGCAACAAAACCTTCACACTGCCATGGTTTCTTGCTTTCTCATGTGAATCTTGGTTCACTTATACTTGGATTGTGGTTCTCAACACCAAATGGAGTCCTGCTGTTACCAAAACATATCCAAACCGTCTTCTTCAACGGTATGTAATATAAACTGTGTCGCAATATTTGATATTCTTGTAAGTTACTGTCTTTACTCTGTGTATGTAATTGATGCAACTCAATCAAGAGTTGCAGCGACATCAAGATCGGTATCAAAATTAATCTTGATGTTGCAGTTTATGCTGCAGTGGCGGGTAACAACATTTCCATGAAGTCTTGCACTGATTTCGTTACAACATGATAAGTGTTCAGTTCAAGTATGTAGTTAAGATGCTTAATGGATATATGAGGTGTCAAAATTGATTAACCACTAAATAACACTTGAAAATAATGGTTACCACTTTCGAGTTCGTAGTTAATGAAATTATCTTGAAGATGCTTAATGATTTTTGTCATCTGATATATCCATTAACTAACTATTGAATGTAATTACCTACTTATTTTAACTTATTTAAACTATACCAACCACTTAAAAAGTTTTCGCAAACTATTTCTCTTGCTAATTAGTCTCTCAAGGTTTGTGCTTATTTTGTTTTTTTTTTTTTTCCCCTGCTAGAGTACCTGAGAATGAGCTTCCGCGTGTGGATTTGTTTGTGACAACAGCAGATCCTGTTCTAGAACCACCAATCATCACATTGAACACTGTTTTGTCTCTGTTGGCTCTTGATTATCCAGCTAATAAGCTAGCTTGTTATGTTTCTGATGATGGCTGTTCTGTTTTTACCTTTTATGGTCTTTTGGAAGCTTCCAAATTTGCTAAGTTTTGGGTTCCTTTCTGTAAGAAGTATAATATACAAGTTAGAGCACCTTTTAGATATTTTTCTGAAGTTACCAATAGTGAAGATTCACCAGAATTTAAACAAGAATGGTTAAAAATGAAGGTAAGTAGTATAATATTACCCTGCAATGATTGATATACATGTTATGAGTTATGACATAAGAAGTATAATGGTTTGTCTTTTGTGTTTGTTGCAGGATATGTATGACAATCTTAGCCACAAAATTGAAGATGTGACGCTAAATTCAACTTCATTCCAATTTGAGGGAGAATATGCAGTGTTCTTAAATACAGAAAAAAGAAATCATTCAAGTATAGTTAAGGTAACTAATATAGTAAAAAATATTCGTGCATCTATAACTACATGTAATCCTTATTTTTTGGGGAGGTTGACTGTTGTGACCGACAAGAAAGACCAGGACACCGCATTTTCACCAAAATTTCTAGACATATCTAAGTTCGTTCATTGCTAGTCGATGTAGGACCAAGTACTCATGCTTGAATTTGAGCAAACCAATAAGACTAACATAAAGCGTTGACAGGTTATATTGGAGAACAATGATAGTCTTTCTGATGGATTGCCTCACTTAGTCTACATATCTAGAGAGAAGAGACCAAAGTACGAACACAATTACAAAGCCGGAGCTATGAATGTGTTGGTAATTTTTCAGACTAATATTTAGTGTTGTGAAAATCTAATTCTTAGTTTTTTGGGAACCATTCTTATCTTTCTTAATTGAAATTTGTAGACAAGAGTCTCAGGATTGATGACCAATGCGCCTTTTATGTTGAACGTAGACTGTGACATGGTTGTGAACAATGCCAAGATTATTCAACATGCTATGTGCATTTTGATGGATTCTAAGAATGGAAAAGATGTTGCTTATGTTCAATGCTTCCAACAATTTTATGATGGAATTAAAGATGACCCTTTTGGAAATCAATGGGTGGCTTCATTTGAGGTTTCTTCACATCTTCAAATGCATCTATCGCTTTACCTCTTACAATTTAGTGTTTACAAATTTTTTATGTTTTGTTTTGCTTTATGCAGTACATAATAAAGGGCATGGGAGGACTTCAAGGACCTTTCTATGGAGGAACAAACACCTTTCATAGAAGAAATGCTATGTATGGTCTTTATCCTGATGAAATTCAATATGGAAGAAAAGGTCACTTATTCATTGCATATCTTAGTTTGTTACTATTAATAGTTGAATCCTATATGATACTAAAAAACACACACTTTTGTATCTTTATTAGGAAAAATAACAGAAAAGATATTAATACAGCAATTTGGAAGCTCAAGAGAGTTTGTCAAATCAGTAACACATGCTTTTGAAGGGAGTGATAATTCAATTGATGGTATTAGTCCTTCCAATCTTCTTGATAAAGCAATCCAAGTATCAGATTGTGGATATGAATATGGCACTTGTTGGGGTAAACAGGTAAGTTACATAAACAAATTTATTTTTCACACAAACTATTTTCAAAATTTAAATTTTGTTAATGAGAAAACGGGACATGCACAGTCCATGTAAACTAGTTTTACACTAACGTCCAATGAGAATCCAACATTTTGCAGTTAATTTTACATTGCGGTTATAAAGTTGCCTTGTGTGGTCTGTCTTTGAAGTTTGCTGTCGTTAGATGTCGGTGTAAAACTATTTTATATTGTCGGTGCATCTCCATTAAACTTTGTTAATTAACTTTGAGGATTTTGGAAACATCAGATGGGTTGGTTATATGGATCAATATCAGAAGATGTACCAACTGGATTGAATATGCAAAGAAAAGGTTGGAGATCAGAATGTTGTACACCGGAGCCAACAGCCTTCATGGGATGCGCTCCCGGAGGATTACTCACTACAATGATCCAACAAAAGAGATGGTCTTCAGGCCTCACTGTTGTCTTCTTTAGCAAGCATTCTCCTGTTATAGGTACCCTCTTTGGTAAAATCCAATTCAGGGCAGGCTTGTCTTATTGTTGGCTTACCAATTGGGGTCTGCGTTCGGTCTTTGAAGTTTCTTATGCAGCCCTAGTTGCATATTGCATAATCATCAACACCAGTATCTTTCCTAAGGTTAGATTTTTGCGATAAATTTCTAGTAGCAAGTTGAATTAAATATTGAGGGTTTTTTGGATTAGTCTATTGGAGCTTATCTACTGGCATACGTACTTGTGAGACTATTTGTCAGATATAATTGGACGCACGTGTAAAGCTTTGCGTTGTACAATCGTTAATTTTGAGTTTAATATACTACTTTTTTATTCCAGGGACTTGGGCTATGGATTCCTTTAACTCTTTTTGTGATCTATACTATACATACACTACAAGAGTATCTATCAAAAGGATTATCATTAAGATTTTGGTGGAACAATCAGAGAATGATTACAATAAGATCAACAAGTGTATGGTTTATTGGATTTTTGAGTGCCATGCTTAAGCTCTTAGGGATATCTGATACAGTCTTTGAAGTAACACAAAAGGAAAGTCCAACTTCTGGTGCTGCTGAAGATGATGCAAATGCTGGTAGGTTCACATTTGACGAGTCCCCAGCTTTTGTGGCTGGCACAACCATTTTGCTTGTGCAATTGACAGCACTTGTTGTTAAGATTTTGGGGGTGCAATTAGCAGCTCATAATGGGAATGGATGTGGACTAGGTGAGTTAATGTGTAGTGTGTATCTAGTAGTATGTTATTGGCCATTTTTGAAAGGGTTGTTTGCTAGGGGTAAATATGGGATTCCATTATCTACCATTTTCAAGTCAGCACTTCTTACATTTATTTTTGTGCACTTCACTAGAATTGCTGTTGTAAGTAGATAG
Protein sequence

>MS.gene35708.t1

MVNQENLPLYEKIWIKRTLQRAIDLLILILLFSLLCYRIFFSISNKTFTLPWFLAFSCESWFTYTWIVVLNTKWSPAVTKTYPNRLLQRVPENELPRVDLFVTTADPVLEPPIITLNTVLSLLALDYPANKLACYVSDDGCSVFTFYGLLEASKFAKFWVPFCKKYNIQVRAPFRYFSEVTNSEDSPEFKQEWLKMKDMYDNLSHKIEDVTLNSTSFQFEGEYAVFLNTEKRNHSSIVKVILENNDSLSDGLPHLVYISREKRPKYEHNYKAGAMNVLTRVSGLMTNAPFMLNVDCDMVVNNAKIIQHAMCILMDSKNGKDVAYVQCFQQFYDGIKDDPFGNQWVASFEYIIKGMGGLQGPFYGGTNTFHRRNAMYGLYPDEIQYGRKGKITEKILIQQFGSSREFVKSVTHAFEGSDNSIDGISPSNLLDKAIQVSDCGYEYGTCWGKQMGWLYGSISEDVPTGLNMQRKGWRSECCTPEPTAFMGCAPGGLLTTMIQQKRWSSGLTVVFFSKHSPVIGTLFGKIQFRAGLSYCWLTNWGLRSVFEVSYAALVAYCIIINTSIFPKGLGLWIPLTLFVIYTIHTLQEYLSKGLSLRFWWNNQRMITIRSTSVWFIGFLSAMLKLLGISDTVFEVTQKESPTSGAAEDDANAGRFTFDESPAFVAGTTILLVQLTALVVKILGVQLAAHNGNGCGLGELMCSVYLVVCYWPFLKGLFARGKYGIPLSTIFKSALLTFIFVHFTRIAVVSR