AlfalfaGEDB | MS.gene61615

M. sativa cultivar XinJiangDaYe / MS.gene61615

KEGG: -
GO: GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0016760 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0035251 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0051273 GO:0051274 GO:0071704 GO:0110165 GO:1901576
PFAM: PF03552.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61615.t1	XP_013455682.1	94.6	653	35	0	1	653	1	653	0.00E+00	1306.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61615.t1	Q339N5	49.1	654	322	7	9	653	11	662	5.9e-179	629.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61615.t1	A0A072UKU0	94.6	653	35	0	1	653	1	653	0.0e+00	1306.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene61615	0.827019	1.97E-54	-1.69E-46
MS.gene049173	MS.gene61615	0.831212	1.90E-55	-1.69E-46
MS.gene049217	MS.gene61615	0.815619	8.43E-52	-1.69E-46
MS.gene049222	MS.gene61615	0.852952	3.29E-61	-1.69E-46
MS.gene049232	MS.gene61615	0.839757	1.31E-57	-1.69E-46
MS.gene049285	MS.gene61615	0.850452	1.68E-60	-1.69E-46
MS.gene049320	MS.gene61615	0.834896	2.30E-56	-1.69E-46
MS.gene049356	MS.gene61615	0.820592	6.32E-53	-1.69E-46
MS.gene049369	MS.gene61615	0.871506	6.49E-67	-1.69E-46
MS.gene049396	MS.gene61615	0.851952	6.35E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene61615	MS.gene35707	PPI
MS.gene61615	MS.gene66611	PPI
MS.gene61615	MS.gene059307	PPI
MS.gene61615	MS.gene059304	PPI
MS.gene61615	MS.gene061307	PPI
MS.gene61615	MS.gene034349	PPI
MS.gene61615	MS.gene35708	PPI
MS.gene61615	MS.gene059306	PPI
MS.gene61615	MS.gene35839	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61615.t1	MTR_4g050000	95.406	653	30	0	1	653	1	653	0.0	1298
MS.gene61615.t1	MTR_2g087900	61.826	668	235	9	1	653	3	665	0.0	827
MS.gene61615.t1	MTR_2g087960	57.943	661	270	4	1	653	1	661	0.0	792
MS.gene61615.t1	MTR_2g087950	59.697	660	247	7	1	653	1	648	0.0	789
MS.gene61615.t1	MTR_2g087980	58.537	656	264	4	1	653	1	651	0.0	785
MS.gene61615.t1	MTR_2g087900	62.976	578	196	7	1	564	3	576	0.0	732
MS.gene61615.t1	MTR_2g087960	59.331	568	223	4	1	560	1	568	0.0	692
MS.gene61615.t1	MTR_2g087900	62.076	472	160	8	1	458	3	469	0.0	562
MS.gene61615.t1	MTR_2g087900	67.630	346	107	4	1	342	3	347	2.51e-160	465
MS.gene61615.t1	MTR_3g060240	35.909	660	382	14	1	643	1	636	7.05e-125	387

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61615.t1	AT2G32530	43.517	671	345	9	8	653	10	671	0.0	576
MS.gene61615.t1	AT2G32540	46.248	653	330	7	8	647	10	654	0.0	575
MS.gene61615.t1	AT4G15320	44.091	660	341	12	1	644	1	648	0.0	558
MS.gene61615.t1	AT4G15320	44.091	660	341	12	1	644	1	648	0.0	558
MS.gene61615.t1	AT2G32620	43.731	670	343	11	8	653	10	669	0.0	550
MS.gene61615.t1	AT4G15320	43.111	675	341	13	1	644	1	663	0.0	550
MS.gene61615.t1	AT2G32610	43.857	643	340	8	8	637	10	644	0.0	534
MS.gene61615.t1	AT4G15290	42.921	671	347	11	8	653	10	669	4.05e-178	525
MS.gene61615.t1	AT2G32620	45.576	599	302	10	8	592	10	598	1.31e-177	518
MS.gene61615.t1	AT4G15320	40.793	706	330	14	1	644	1	680	1.81e-176	522

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Find 142 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTACAATGTGCAAATT+AGG	0.126668	4.1:-47840295	MS.gene61615:CDS
AAACATGGTTCACCTTATCT+TGG	0.371514	4.1:-47841706	MS.gene61615:CDS
AAACTACAGTACCTTGGAGC+AGG	0.577144	4.1:-47838454	MS.gene61615:intron
AAAGGCTGGACTCCATTGAG+TGG	0.643881	4.1:+47841670	None:intergenic
AAAGTACAATGTGCAAATTA+GGG	0.407961	4.1:-47840294	MS.gene61615:CDS
AAATCATCCAGCCATAATCA+AGG	0.569735	4.1:-47839939	MS.gene61615:intron
AACAAAGAAATGGCTGAAGA+TGG	0.473942	4.1:-47839005	MS.gene61615:CDS
AACAGTACCTTGATTATGGC+TGG	0.473416	4.1:+47839932	None:intergenic
AACCAAGCAACAACAAAAGG+AGG	0.647360	4.1:+47841786	None:intergenic
AACTCTCCTTCAAGTAAGCT+TGG	0.422451	4.1:+47839989	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGCATGCATAACAATATT+TGG	+	chr4.1:47839763-47839782	None:intergenic	30.0%
ACAAACATAATTGATGAGTG+TGG	-	chr4.1:47837741-47837760	MS.gene61615:CDS	30.0%
ACAAGAATGGTTACAAATGA+AGG	-	chr4.1:47838280-47838299	MS.gene61615:intron	30.0%
ACAGTGTTTATTGTGATGAT+TGG	+	chr4.1:47838044-47838063	None:intergenic	30.0%
ACTGTTCTACTCAAATTGTT+AGG	-	chr4.1:47841684-47841703	MS.gene61615:CDS	30.0%
AGAATAACATCTATGAATGC+TGG	-	chr4.1:47841645-47841664	MS.gene61615:CDS	30.0%
AGCAAAAATGTGAGAAATTG+AGG	+	chr4.1:47837413-47837432	None:intergenic	30.0%
AGGAAACAACTTATGTAAAG+TGG	-	chr4.1:47840255-47840274	MS.gene61615:CDS	30.0%
AGTTGTTCACATACATAACA+CGG	+	chr4.1:47836734-47836753	None:intergenic	30.0%
ATATTCCTACTGCAATAGTT+GGG	-	chr4.1:47841541-47841560	MS.gene61615:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	47836621	47841894	47836621	ID=MS.gene61615
chr4.1	mRNA	47836621	47841894	47836621	ID=MS.gene61615.t1;Parent=MS.gene61615
chr4.1	exon	47841638	47841894	47841638	ID=MS.gene61615.t1.exon1;Parent=MS.gene61615.t1
chr4.1	CDS	47841638	47841894	47841638	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47840214	47840535	47840214	ID=MS.gene61615.t1.exon2;Parent=MS.gene61615.t1
chr4.1	CDS	47840214	47840535	47840214	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47839940	47840062	47839940	ID=MS.gene61615.t1.exon3;Parent=MS.gene61615.t1
chr4.1	CDS	47839940	47840062	47839940	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47838923	47839039	47838923	ID=MS.gene61615.t1.exon4;Parent=MS.gene61615.t1
chr4.1	CDS	47838923	47839039	47838923	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47838615	47838827	47838615	ID=MS.gene61615.t1.exon5;Parent=MS.gene61615.t1
chr4.1	CDS	47838615	47838827	47838615	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47838359	47838467	47838359	ID=MS.gene61615.t1.exon6;Parent=MS.gene61615.t1
chr4.1	CDS	47838359	47838467	47838359	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47838071	47838258	47838071	ID=MS.gene61615.t1.exon7;Parent=MS.gene61615.t1
chr4.1	CDS	47838071	47838258	47838071	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47837589	47837939	47837589	ID=MS.gene61615.t1.exon8;Parent=MS.gene61615.t1
chr4.1	CDS	47837589	47837939	47837589	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47836710	47836987	47836710	ID=MS.gene61615.t1.exon9;Parent=MS.gene61615.t1
chr4.1	CDS	47836710	47836987	47836710	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1
chr4.1	exon	47836621	47836633	47836621	ID=MS.gene61615.t1.exon10;Parent=MS.gene61615.t1
chr4.1	CDS	47836621	47836633	47836621	ID=cds.MS.gene61615.t1;Parent=MS.gene61615.t1

Gene Sequence

>MS.gene61615

ATGGCCAACCCAAACTCTCTTCCACTCTATGAAAAATATTGGTACAAACACAATTACAAAAGGGTAATAGATAGCTTGATTTTAATCCTCCTTTTGTTGTTGCTTGGTTACCGTGTTATGTATGTGAACAACTACTCTATTCCTTGGTTTATTGCTTTGAGTTGCGAAACATGGTTCACCTTATCTTGGATTTTCACCATCTCCACTCAATGGAGTCCAGCCTTTATCAAAACCAACCCTGACCGTCTCCTCCAAAGGTATTTGACTATTGATTTCTCTTTACTAACTGCAAATATACCTTCATAACAATTAATTTATCATCATCAACCTAATTAATAATTTATTTTCTTAGAAGTTTTGGTACTTATTCCCTCCGATAACTATTATAACAGAAAAAATAAAAAATTTATGTTTATTGAAAAGCGGATGTATTTAGTCTATAATATTGATCAGATACATCGGTTATTCAACGAATCTAAAAAGTAATTTTTAATTTATATTAGTGATCGGATGGAGTAATTAATTACAAGTACATACATATATAATTTTTACATTATGTTTTCATTCAAAAATGTTTTCAAATATTTACTCAAATGGCATATATTTGTCTTCGTGAGCTTACCTCAGTTGATAGGTACAATGCATAACATATGCAAGGTTCGGGATTCGAACCCCGAACACAGGCTTTAAGTGTTATAATATAAAAACTAGACTTAAATGTACTTTTGATCCTCCTATTTTAGATGAAACATAATTTTAGTCTCTATTTTTAAATTCGAGTTTATGGTCCCTCAATTTCTCACATTTTTGCTATATTTTGTTCCCAATTTGGTCTTTTCACCCAAAAATTAATGATTTTTGACCCCAAAGTGGTATTTTTGCTCTAATTTTGATAGTGAAGATAAAACACACAGAATTATAGAATTATAACTGGTGGGACCGAAAATTCCCACTTTAGGGTTTAAAAATCACAATTTTTTGGGTCAAAACACAGGTTAGGATCACACTTACAATAATGTGTGATAAAAGTGTATTTAAACCTAAAAACTATTAAGAACCAAACTATTATGAAATTTGAATTTATTTATTTTTGCAAGAAATTGAAGTCATTGGGATATATACAAACATAATTGATGAGTGTGGTGTGTGTATGTGTTTATATATATTCTTGAACTATAGATATATTTACTCAAAAAATAGAATTTACAATCAAAATCATATACCTAAAAATAAAATAAAAAATTTAATTCTGATTTACTAAGTTGATGAAATAATTTATAAACAAAATTTTTTCTTTAAACTTTCATAGATAACTTTTTAACAGTGATAGACATGGTGTTTATCGTCAATTTCAAGCAGTGTGCAAGAACTTCCAGCAGTGGATATATTTGTGACAACAGCAGATGATGAGCTAGAACCACCAATCATCACAATAAACACTGTTTTATCGTTGTTAGCACTTGATTATCCATCTCACAAGCTAGCTTGTTACGTTTCTGATGATGGTTGTTCTCCTCTAATCTTCTATGCTCTTCACAAAGCTTCAAAATTTGCAAAACATTGGGTACCATTTTGTAAAAAGTACAATGTGCAAATTAGGGCTCCATTTAGATACTTTTGTGATGACAACGAATGCGCGACCAATGACCAAGAATTCAGACAAGAATGGTTACAAATGAAGGTACGTAACTAGTTTTATTTTTTAATATAAGAAAGGTAAGTAACATGTTGCCAGTGATACTAATAATAATGCAATATTGATTCTGTTGACAAATTAAAGATTTGTCTGACCACAAAATGTCAAACGGTTTTTGTTTCTCCCTTGTTGACAGGATATGTATGAAAATCTTAGCCGTAAAATAGATGTGGACCCAAAATCTATCCCAAGCTTACTTGAAGGAGAGTTTGCAGTTTTCTCAAATACTAACAGGACAAATCATCCAGCCATAATCAAGGTACTGTTTGTGGTCCGGCTGTTAGGAACCACACACATTCGCGCATTTGAATTATCCGTAGTCGTTCGATCAAAATTAAATGATTTAGATTCAAGTTTGATATTTTAAATTATTAAATGAAAATAAAATTATATTTTCTTTTATCTATTTGATTTTGATCGAACTTTCGCCAACGTTCCGAATTCATGAATATTTGATTCTATTAACAAGAGTGAATCCAATTTTTCCTTAAAAAAAAAAAAAAAAAGTGAATCCAATTTTGTTCACCAATATTGAAACAAACCCTTCGTTTTAAAATATCTTTTAGCTTTATGTTGTTACATTCAAATTAGAAATGTAATGATTTATGAAATTAATCTTGTTAACAATCGATATCTTTCATACAGTCGTAAACGCAAAAAGAAATATAATGATTTAAAAGTAGCTTACATGATGCTAATTAGATGGCATGGCACAATATCAAGATCTAATTAATTCCACATTGAAAAGTGAAAATAACGCATTAACGTTTGAAACATAAATATTATTTGCTAAAGTAACATTCATCATCAAAGTCTCCGTGAGTTTAGCTCAATTGACAAAGAAATTGTATAATATATGCAGAGGTTGTGATTCGACCCTTGGACACCCAACTTATTCTCCTTAAAAAGGAGAATTTCGAGCCACTTGGCTATATAACCAAAAAAAACATTCATCATGAAATTACTTTTATCAAGCAATATTATGATTTAACATACAATCTGAAAATAAGATTACTTGCAAAAATAACACTGGCACTACTTGCAAAAACTTTGCACAGGAAAAATATTATTTTTGTTTCAAAATAGTTTACCTTAATTACCTGTCAAAAGAAAACATGTCTAACAAAACATATTAATGCTCACTTCCTGAATTTATAAGGTTATATGGGAGAACAAAGAAATGGCTGAAGATGGATTGCCACATTTGATCTACATATCTAGAGAGAAGAGGCCAAAGCAACCACATCATTTCAAAGCCGGTGCTATGAATGTGTTGGTAAATTCTTTAGAATCTTAAATGGCATTTCTCAAAAACCCTAACATATTTTCAATTTGTATTTGAACTATGCTCTCATTAATTTTGTTATTCAGACAAGAATCTCTGGGTTGATTACCAATGCACCCTTCATGTTGAACGTGGACTGTGACATGTTTGTAAACAATCCAAATATTGTTATGCATGCCTTGTGCATTTTGCTTGACTCCAAAGGGGAAAAAGAAGTAGCTTTTGCTCAATGTCCCCAACAATTCTATGCTACACTCAAAGACGATCCTTTTGGAAATCAAATGGCAATTTTGTATAAGGTAAGTGTAATTTAATAATACGAAGTCATAAAATAGTATTTAAACTTTGTCAATTACTATCTTAATTTGCATGTTTTATGAATAAGTTAGATCATTCATTACTTCATTAATTTTATGAATTCAATTTTTAACTAATGTAAACTACAGTACCTTGGAGCAGGATTAGCAGGACTCCAAGGAATGTTCTACGGAGGAACAAACTGCTTTCATAGAAGAAAAGTTATTTATGGTCTCTCTCCGGATGACGTAGAAAAGGGTACGTAGTACGTACATATATGTTACTAATTTAATTAGGGTTTTTCTATCATAACATGACTCTTTTTTGGTTACCCTAAACTCTCAAACCAATGTTGCAGGAAACAACTTATGTAAAGTGGAGTTAAAACAAAAATTTGGAGCTTCAAAGGAACTTATGAAATCAGTTAGTCATGCTTTGGAAGATAGGACCTATTCAGCTAGTGATATTGATGTTAACAAAGCTGTTGAGGAAGCTATCGAAGTTGCTTCTTATGGATATGAATACGGCACTGGCTGGGGTAAACAGGTTTGTCATACAAACTTGTATGAACTTGATAGACGCCTGTGTTTTGTTTTGTTTTGTTTTGTTTGCTTGCTCGGTGCGACTTGCAGATGTAGCGGTTAATAAATTTTGGTTTGATCTTGTTGGAATTTTAGGTGGGTTGGATGTATGGAACAATGACAGAAGATATACTAACTGGGCTGACGATACACAAAAAAGGTTGGAGATCAGAATTATGTACACCAGAACCAATAGCCTTCACAGGTTGTGCTCCAATTGATGGCCCCACCTGTATGGCTCAACATAAGAGATGGGCCACAGGAATGCTTGAGATCTTCTTTAGCAAACATTGTCCTATTTTTGCTGCCGTTTTTGGTAAACTTTCTTTTAGGCAATTCTTAGCTTATATGTGGATCATGAACTGGGGATTTGGTCCAGTTGCTCAAGTATGTTATGCTTGTCTCCTTGCATATTGCATCATTACCAACTCCTATTTCCTGCCAGAGGTGAGCATTGAAAAACACACATATACCATTTTTCCTTCGCTAACAGCAATATTATTAAAAACATTGAAAAATCAGTACTTCTATGTAGCACCGACACTTCATATTAAAAGTGTGTTCGACGTCACTAACACCAACATCACACTTAAACATGTGATTACATTCGATCATGTTTGTTTATTAAAGTAATATTGATGTCTATGTGTTGTTTGCATCATTATTGTGTTTAGTGTTCATGTATGTATGTCGGTTGCTTATAGCATCATTTTGTTAGAAATATTACATTAGAGCTTCCTATTGAAGAATCAAACATAGTTTCTATAATTCATTCATGTAAGTGTTATTTACATAAAAATCCTATGAAAATAATAAATGCAATGGACTATGTGTAACTTTAATATGATTATGTATATCAGTATAATGTTTCCTTTTATTATTATTGAATTTGTGGAAAATGTAGGGCTATATATAGATTTATGTTGACATAATAACACATAATTATGTTTTTTACTTTTTATTAATTCCAACTCTGCAGATCAATTTTACGTTAACATGTATTCAAATATACAAACATAGATTAACTTTTGTAATTTGTTCAATACAGGATTGGGGCATATATATTCCTACTGCAATAGTTGGGATTTACAAAGTATATACTCTATACGAATATTTGGCCTCAGGATTGTCAATTAAAGCATGGTGGAACAATCAAAGGATGTCGAGAATAACATCTATGAATGCTGGATTCTGTGGATTTATTACTGTTCTACTCAAATTGTTAGGAATATCTAACACTGTTTTTGACATAACAAAGAAAGATCTTCCTCCCTCTAGGGATGATCGACATGATAAGAATGCCGGTAGATACACTTTCAACGAGTCGTTAGTTTTCTTGCCAGGAACTGCCATTTTATTGTTGCAATTGACAGCAATATTTATCAAGTTGTTTGGATTTCAGCCACAAAGTTTAA

Protein sequence

>MS.gene61615.t1

MANPNSLPLYEKYWYKHNYKRVIDSLILILLLLLLGYRVMYVNNYSIPWFIALSCETWFTLSWIFTISTQWSPAFIKTNPDRLLQSVQELPAVDIFVTTADDELEPPIITINTVLSLLALDYPSHKLACYVSDDGCSPLIFYALHKASKFAKHWVPFCKKYNVQIRAPFRYFCDDNECATNDQEFRQEWLQMKDMYENLSRKIDVDPKSIPSLLEGEFAVFSNTNRTNHPAIIKVIWENKEMAEDGLPHLIYISREKRPKQPHHFKAGAMNVLTRISGLITNAPFMLNVDCDMFVNNPNIVMHALCILLDSKGEKEVAFAQCPQQFYATLKDDPFGNQMAILYKYLGAGLAGLQGMFYGGTNCFHRRKVIYGLSPDDVEKGNNLCKVELKQKFGASKELMKSVSHALEDRTYSASDIDVNKAVEEAIEVASYGYEYGTGWGKQVGWMYGTMTEDILTGLTIHKKGWRSELCTPEPIAFTGCAPIDGPTCMAQHKRWATGMLEIFFSKHCPIFAAVFGKLSFRQFLAYMWIMNWGFGPVAQVCYACLLAYCIITNSYFLPEDWGIYIPTAIVGIYKVYTLYEYLASGLSIKAWWNNQRMSRITSMNAGFCGFITVLLKLLGISNTVFDITKKDLPPSRDDRHDKNAGRYTFNESHKV