Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35851.t1 | XP_013443637.1 | 88.9 | 415 | 7 | 2 | 1 | 376 | 1 | 415 | 1.50E-194 | 688.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35851.t1 | Q8VXY7 | 61.3 | 419 | 118 | 3 | 2 | 376 | 32 | 450 | 8.7e-135 | 481.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35851.t1 | A0A072TJQ1 | 88.9 | 415 | 7 | 2 | 1 | 376 | 1 | 415 | 1.1e-194 | 688.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59641 | MS.gene35851 | PPI |
| MS.gene036758 | MS.gene35851 | PPI |
| MS.gene35851 | MS.gene036759 | PPI |
| MS.gene59944 | MS.gene35851 | PPI |
| MS.gene35851 | MS.gene62397 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35851.t1 | MTR_0003s0470 | 89.848 | 394 | 2 | 1 | 21 | 376 | 22 | 415 | 0.0 | 696 |
| MS.gene35851.t1 | MTR_3g462280 | 73.723 | 411 | 68 | 2 | 6 | 376 | 13 | 423 | 0.0 | 583 |
| MS.gene35851.t1 | MTR_4g114710 | 45.946 | 407 | 164 | 5 | 12 | 376 | 6 | 398 | 1.38e-107 | 321 |
| MS.gene35851.t1 | MTR_0008s0170 | 30.769 | 416 | 224 | 10 | 18 | 376 | 2 | 410 | 2.73e-50 | 174 |
| MS.gene35851.t1 | MTR_2g011600 | 31.702 | 429 | 222 | 12 | 8 | 376 | 2 | 419 | 4.79e-50 | 174 |
| MS.gene35851.t1 | MTR_0008s0130 | 31.863 | 408 | 214 | 13 | 25 | 376 | 11 | 410 | 6.94e-50 | 173 |
| MS.gene35851.t1 | MTR_2g047968 | 33.656 | 413 | 200 | 12 | 25 | 376 | 11 | 410 | 8.39e-49 | 171 |
| MS.gene35851.t1 | MTR_2g011580 | 32.199 | 382 | 199 | 9 | 50 | 376 | 2 | 378 | 4.62e-44 | 157 |
| MS.gene35851.t1 | MTR_4g050990 | 32.195 | 410 | 210 | 11 | 25 | 376 | 11 | 410 | 6.90e-44 | 157 |
| MS.gene35851.t1 | MTR_2g089520 | 32.195 | 410 | 210 | 11 | 25 | 376 | 11 | 410 | 6.90e-44 | 157 |
| MS.gene35851.t1 | MTR_2g011600 | 34.921 | 315 | 175 | 8 | 83 | 376 | 63 | 368 | 4.51e-43 | 154 |
| MS.gene35851.t1 | MTR_1g071120 | 30.211 | 331 | 169 | 9 | 26 | 302 | 53 | 375 | 1.36e-34 | 132 |
| MS.gene35851.t1 | MTR_8g007285 | 30.508 | 295 | 180 | 6 | 102 | 376 | 73 | 362 | 3.26e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35851.t1 | AT1G70330 | 61.337 | 419 | 118 | 3 | 2 | 376 | 32 | 450 | 0.0 | 511 |
| MS.gene35851.t1 | AT1G02630 | 46.530 | 389 | 158 | 4 | 25 | 376 | 14 | 389 | 1.65e-113 | 336 |
| MS.gene35851.t1 | AT1G02630 | 40.360 | 389 | 138 | 6 | 25 | 376 | 14 | 345 | 7.79e-84 | 259 |
| MS.gene35851.t1 | AT4G05120 | 31.553 | 412 | 209 | 12 | 25 | 376 | 14 | 412 | 6.00e-45 | 160 |
| MS.gene35851.t1 | AT4G05120 | 31.553 | 412 | 209 | 12 | 25 | 376 | 14 | 412 | 6.00e-45 | 160 |
| MS.gene35851.t1 | AT4G05110 | 30.882 | 408 | 217 | 10 | 25 | 376 | 14 | 412 | 3.94e-44 | 158 |
| MS.gene35851.t1 | AT4G05110 | 30.882 | 408 | 217 | 10 | 25 | 376 | 14 | 412 | 3.94e-44 | 158 |
| MS.gene35851.t1 | AT4G05110 | 30.882 | 408 | 217 | 10 | 25 | 376 | 14 | 412 | 7.40e-44 | 157 |
| MS.gene35851.t1 | AT1G61630 | 29.803 | 406 | 219 | 9 | 29 | 376 | 15 | 412 | 2.78e-43 | 155 |
| MS.gene35851.t1 | AT4G05130 | 28.979 | 421 | 229 | 11 | 16 | 376 | 2 | 412 | 3.60e-41 | 150 |
| MS.gene35851.t1 | AT3G09990 | 28.922 | 408 | 229 | 9 | 24 | 376 | 12 | 413 | 4.25e-41 | 149 |
| MS.gene35851.t1 | AT4G05140 | 29.496 | 417 | 223 | 10 | 21 | 376 | 7 | 413 | 4.28e-41 | 150 |
Find 75 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTATTATTGCTTGGTTT+TGG | 0.145627 | 4.1:-58259837 | MS.gene35851:CDS |
| ATCTCTGTCCGGAAGAATTT+TGG | 0.169442 | 4.1:+58260012 | None:intergenic |
| GTTGGTGCTGTTGGACTTTC+CGG | 0.196933 | 4.1:-58261821 | MS.gene35851:CDS |
| CTCGGCATGCTGTAACTTTA+CGG | 0.281643 | 4.1:+58259909 | None:intergenic |
| TATATGCTCGTTGGTCTCTT+TGG | 0.293747 | 4.1:-58262001 | MS.gene35851:CDS |
| ATGCGATCAACGCTTGCTTC+AGG | 0.323304 | 4.1:+58262037 | None:intergenic |
| AATAGGTTATGTATGCTAAA+TGG | 0.326421 | 4.1:+58262134 | None:intergenic |
| CACACTACTGACTTGTCTCT+TGG | 0.337270 | 4.1:-58259983 | MS.gene35851:CDS |
| TTCATCGTAGTACTTCATAA+TGG | 0.339715 | 4.1:+58260383 | None:intergenic |
| CTTCTACCATCATCATCTTC+AGG | 0.343945 | 4.1:-58262187 | MS.gene35851:CDS |
| AAACATTAAAGCAAGTAATA+AGG | 0.355362 | 4.1:+58260154 | None:intergenic |
| ACACTACTGACTTGTCTCTT+GGG | 0.369638 | 4.1:-58259982 | MS.gene35851:CDS |
| GTCCTTTGACTGGATCTGTT+TGG | 0.371216 | 4.1:-58260323 | MS.gene35851:CDS |
| TATGTTGCTGTTGGTGCTGT+TGG | 0.372892 | 4.1:-58261830 | MS.gene35851:CDS |
| GGTTCTATTGTTGGATCTGC+TGG | 0.374532 | 4.1:-58261776 | MS.gene35851:CDS |
| ACCTATTTCATCCTCGGCTT+CGG | 0.379772 | 4.1:-58262118 | MS.gene35851:CDS |
| CTTCTGGTTCTATTATTGCT+TGG | 0.384734 | 4.1:-58259843 | MS.gene35851:CDS |
| CTACGATGAACTAAAGATTC+AGG | 0.394767 | 4.1:-58260370 | MS.gene35851:CDS |
| GTGACACTCGCAATATTTCC+AGG | 0.397334 | 4.1:-58260231 | MS.gene35851:CDS |
| ACCGAAGCCGAGGATGAAAT+AGG | 0.412069 | 4.1:+58262117 | None:intergenic |
| ATTGCTGGCACTGCTGCTTC+TGG | 0.415429 | 4.1:-58261722 | MS.gene35851:intron |
| TATATGCAAGCTGTCATTGC+TGG | 0.420137 | 4.1:-58261737 | MS.gene35851:CDS |
| TTGGTGCAGGGTTCTATTGT+TGG | 0.427009 | 4.1:-58261785 | MS.gene35851:CDS |
| TCATCGTAGTACTTCATAAT+GGG | 0.429570 | 4.1:+58260384 | None:intergenic |
| TGTCTCTTGGGGCTTACAAA+TGG | 0.431350 | 4.1:-58259970 | MS.gene35851:CDS |
| TGTCCACTCTCAACTTCTTA+AGG | 0.432985 | 4.1:-58260193 | MS.gene35851:CDS |
| AAGCAAGTAATAAGGAGAAC+TGG | 0.433685 | 4.1:+58260162 | None:intergenic |
| TACACGGTCCAAAATTCTTC+CGG | 0.434751 | 4.1:-58260020 | MS.gene35851:CDS |
| CTGTTTGGAGATCAACTGTA+TGG | 0.436346 | 4.1:-58260308 | MS.gene35851:CDS |
| TGTTGCTGATGCATTGGTGC+AGG | 0.441747 | 4.1:-58261798 | MS.gene35851:CDS |
| TGCGATCAACGCTTGCTTCA+GGG | 0.446495 | 4.1:+58262038 | None:intergenic |
| GAGTGCAAATCTCTACTTTG+CGG | 0.451493 | 4.1:-58260463 | MS.gene35851:CDS |
| TTACAGCATGCCGAGACTGC+TGG | 0.461987 | 4.1:-58259901 | MS.gene35851:CDS |
| TTCCGGTGTTGCTGATGCAT+TGG | 0.464340 | 4.1:-58261804 | MS.gene35851:CDS |
| GCTTCGGTTATTTACTTCCA+TGG | 0.465383 | 4.1:-58262102 | MS.gene35851:CDS |
| TACATAACCTATTTCATCCT+CGG | 0.477284 | 4.1:-58262124 | MS.gene35851:CDS |
| AGACAAGTCAGTAGTGTGAC+AGG | 0.479591 | 4.1:+58259988 | None:intergenic |
| TGTGATTATGTTCCTATGCA+TGG | 0.490569 | 4.1:-58260433 | MS.gene35851:CDS |
| TGGTAGAAGAAGAGTTGAAT+CGG | 0.495312 | 4.1:+58262201 | None:intergenic |
| GCTGTTGTTTATATGCTCGT+TGG | 0.500911 | 4.1:-58262010 | MS.gene35851:CDS |
| AAGAAGAGTTGAATCGGAAT+CGG | 0.503135 | 4.1:+58262207 | None:intergenic |
| TACAGCATGCCGAGACTGCT+GGG | 0.509187 | 4.1:-58259900 | MS.gene35851:CDS |
| TTTATGTTAAGGGTCGGGTC+GGG | 0.513730 | 4.1:-58261868 | MS.gene35851:intron |
| CACTACTGACTTGTCTCTTG+GGG | 0.522654 | 4.1:-58259981 | MS.gene35851:CDS |
| CTAGAAGGTATACTGCTGTA+AGG | 0.525024 | 4.1:+58260112 | None:intergenic |
| AAATCATCAATACGCTGGTA+AGG | 0.526554 | 4.1:+58259944 | None:intergenic |
| GCTAAATGGTATTTGTCTTG+TGG | 0.527798 | 4.1:+58262148 | None:intergenic |
| ACAGCTTGCATATACCTCTC+AGG | 0.532551 | 4.1:+58261746 | None:intergenic |
| GACGACAGCAGTCCTTTGAC+TGG | 0.532845 | 4.1:-58260333 | MS.gene35851:CDS |
| GTGGGAACAATCAAGTGGTA+TGG | 0.534444 | 4.1:-58260279 | MS.gene35851:CDS |
| ACTCTCAACTTCTTAAGGAC+TGG | 0.553604 | 4.1:-58260188 | MS.gene35851:CDS |
| CACCAATGCATCAGCAACAC+CGG | 0.559726 | 4.1:+58261802 | None:intergenic |
| ACATCCTCTGTAATGTAACC+TGG | 0.566880 | 4.1:+58260213 | None:intergenic |
| GTTGTTCCTGAAGATGATGA+TGG | 0.569144 | 4.1:+58262181 | None:intergenic |
| CTCTTCTTAGGATGCCTACA+CGG | 0.571460 | 4.1:-58260036 | MS.gene35851:CDS |
| GTGTGACAGGAATCTCTGTC+CGG | 0.573239 | 4.1:+58260001 | None:intergenic |
| GTTGCTGATGCATTGGTGCA+GGG | 0.577108 | 4.1:-58261797 | MS.gene35851:CDS |
| AGCTAAAATCATCAATACGC+TGG | 0.577988 | 4.1:+58259939 | None:intergenic |
| GTTTACACACAAGATGTCTC+CGG | 0.581564 | 4.1:-58260495 | MS.gene35851:CDS |
| CTGCTGGTGAGTTGCCTGAG+AGG | 0.582234 | 4.1:-58261760 | MS.gene35851:CDS |
| ACTCACAATCCCAGCAGTCT+CGG | 0.585402 | 4.1:+58259891 | None:intergenic |
| ATCAACTGTATGGGATACTG+TGG | 0.588210 | 4.1:-58260298 | MS.gene35851:CDS |
| GCTGTGATGAATGCGTTCCA+TGG | 0.604002 | 4.1:+58262085 | None:intergenic |
| CTCCAAACAGATCCAGTCAA+AGG | 0.607721 | 4.1:+58260321 | None:intergenic |
| CATTGTACAAAACCATGCAT+AGG | 0.607766 | 4.1:+58260421 | None:intergenic |
| TGTTTGGAGATCAACTGTAT+GGG | 0.608553 | 4.1:-58260307 | MS.gene35851:CDS |
| TGTAGGCATCCTAAGAAGAG+AGG | 0.621915 | 4.1:+58260039 | None:intergenic |
| AAGATAAGAGAAGTAATCAA+CGG | 0.623151 | 4.1:+58262063 | None:intergenic |
| ATTTCCAGGTTACATTACAG+AGG | 0.630377 | 4.1:-58260217 | MS.gene35851:CDS |
| GAAGTAAATAACCGAAGCCG+AGG | 0.632052 | 4.1:+58262107 | None:intergenic |
| GTAGGCATCCTAAGAAGAGA+GGG | 0.638243 | 4.1:+58260040 | None:intergenic |
| AAAGATTCAGGCAGTCGCTG+TGG | 0.644804 | 4.1:-58260358 | MS.gene35851:CDS |
| AGTCCTTAAGAAGTTGAGAG+TGG | 0.645129 | 4.1:+58260190 | None:intergenic |
| TCAACTGTATGGGATACTGT+GGG | 0.661944 | 4.1:-58260297 | MS.gene35851:CDS |
| ATACTGTGGGAACAATCAAG+TGG | 0.700888 | 4.1:-58260284 | MS.gene35851:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTAAAATTATTATA+CGG | - | chr4.1:58260826-58260845 | MS.gene35851:intron | 0.0% |
| !! | TTCAAATTTCAATTAAAAAA+AGG | + | chr4.1:58261445-58261464 | None:intergenic | 10.0% |
| !!! | TTTTTAATTGAAATTTGAAA+AGG | - | chr4.1:58261446-58261465 | MS.gene35851:intron | 10.0% |
| !!! | ACATTTCTTTTATTGTTATA+AGG | - | chr4.1:58261200-58261219 | MS.gene35851:intron | 15.0% |
| !!! | ATTGATGTTTTTTATGTTAA+GGG | - | chr4.1:58260167-58260186 | MS.gene35851:CDS | 15.0% |
| !!! | TAAATATCTGATTTTATTCT+AGG | + | chr4.1:58261031-58261050 | None:intergenic | 15.0% |
| !! | AAACATTAAAGCAAGTAATA+AGG | + | chr4.1:58261894-58261913 | None:intergenic | 20.0% |
| !! | ACATAAAAAACATCAATCAA+AGG | + | chr4.1:58260164-58260183 | None:intergenic | 20.0% |
| !! | TAACAATAAAAGAAATGTGT+AGG | + | chr4.1:58261198-58261217 | None:intergenic | 20.0% |
| !! | TCAAAATAGTAACAAAGTTA+TGG | + | chr4.1:58260363-58260382 | None:intergenic | 20.0% |
| !! | TTACAGTGATTATTCTTTAT+AGG | - | chr4.1:58260069-58260088 | MS.gene35851:CDS | 20.0% |
| !! | TTGAAATTTGAAAAGGTAAA+TGG | - | chr4.1:58261453-58261472 | MS.gene35851:intron | 20.0% |
| !!! | ATTTTGAGTTTATTTGTTGT+TGG | - | chr4.1:58260376-58260395 | MS.gene35851:CDS | 20.0% |
| !!! | GATTGATGTTTTTTATGTTA+AGG | - | chr4.1:58260166-58260185 | MS.gene35851:CDS | 20.0% |
| !!! | TCATTTTCTCAAATTATCAT+CGG | + | chr4.1:58260449-58260468 | None:intergenic | 20.0% |
| ! | AACTATAACATGATATCAGA+TGG | + | chr4.1:58261341-58261360 | None:intergenic | 25.0% |
| ! | AAGATAAGAGAAGTAATCAA+CGG | + | chr4.1:58259985-58260004 | None:intergenic | 25.0% |
| ! | AATAGGTTATGTATGCTAAA+TGG | + | chr4.1:58259914-58259933 | None:intergenic | 25.0% |
| ! | AATCTTGAGTAACTTGATTT+AGG | - | chr4.1:58261372-58261391 | MS.gene35851:intron | 25.0% |
| ! | AGAAAAAAAATCAAGTTCCT+AGG | + | chr4.1:58261060-58261079 | None:intergenic | 25.0% |
| ! | ATAAATCTCATGCTTATGTT+AGG | - | chr4.1:58260093-58260112 | MS.gene35851:CDS | 25.0% |
| ! | ATGTGATTATATTCAATCAC+TGG | - | chr4.1:58260796-58260815 | MS.gene35851:intron | 25.0% |
| ! | CATATATATGATGTGAGAAT+GGG | - | chr4.1:58260909-58260928 | MS.gene35851:intron | 25.0% |
| ! | CTTTGTAGTTAGTATTACTT+GGG | - | chr4.1:58261153-58261172 | MS.gene35851:intron | 25.0% |
| ! | GAATAAAATGAATGCCTAAT+TGG | + | chr4.1:58260944-58260963 | None:intergenic | 25.0% |
| ! | TCAGATATTTACAAATTCCT+AGG | - | chr4.1:58261040-58261059 | MS.gene35851:intron | 25.0% |
| ! | TCATATATATGATGTGAGAA+TGG | - | chr4.1:58260908-58260927 | MS.gene35851:intron | 25.0% |
| !! | ACATTTTTATTGTGTACCTT+TGG | - | chr4.1:58261090-58261109 | MS.gene35851:intron | 25.0% |
| !! | TAACTTGATTTAGGTTTGAA+TGG | - | chr4.1:58261381-58261400 | MS.gene35851:intron | 25.0% |
| !! | TTATAGATTGAAAGAGTGTA+TGG | - | chr4.1:58260743-58260762 | MS.gene35851:intron | 25.0% |
| !!! | AGTGTGTTATTCTTAGTTTT+CGG | - | chr4.1:58262174-58262193 | MS.gene35851:CDS | 25.0% |
| !!! | ATCTGATTTTATTCTAGGAA+AGG | + | chr4.1:58261026-58261045 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATGTTAAGGGT+CGG | - | chr4.1:58260171-58260190 | MS.gene35851:CDS | 25.0% |
| !!! | TACGTATGTTTTTGAATTCA+GGG | - | chr4.1:58261491-58261510 | MS.gene35851:intron | 25.0% |
| !!! | TTACGTATGTTTTTGAATTC+AGG | - | chr4.1:58261490-58261509 | MS.gene35851:intron | 25.0% |
| !!! | TTCTATTATTGCTTGGTTTT+GGG | - | chr4.1:58262209-58262228 | MS.gene35851:CDS | 25.0% |
| !!! | TTTAATGTTTTTGACCTAGT+CGG | - | chr4.1:58261904-58261923 | MS.gene35851:intron | 25.0% |
| AATGCTTAAGAAGTTTCCAA+AGG | + | chr4.1:58261109-58261128 | None:intergenic | 30.0% | |
| GAACAATCATGTAGACAAAA+TGG | - | chr4.1:58261233-58261252 | MS.gene35851:intron | 30.0% | |
| GAGAATGCAAAAATTGCTAT+TGG | - | chr4.1:58261955-58261974 | MS.gene35851:intron | 30.0% | |
| GCTTATGTTAGGATTAACTT+GGG | - | chr4.1:58260104-58260123 | MS.gene35851:CDS | 30.0% | |
| GCTTTGTAGTTAGTATTACT+TGG | - | chr4.1:58261152-58261171 | MS.gene35851:intron | 30.0% | |
| TACATAACCTATTTCATCCT+CGG | - | chr4.1:58259921-58259940 | MS.gene35851:CDS | 30.0% | |
| TCATCGTAGTACTTCATAAT+GGG | + | chr4.1:58261664-58261683 | None:intergenic | 30.0% | |
| TGCTTATGTTAGGATTAACT+TGG | - | chr4.1:58260103-58260122 | MS.gene35851:CDS | 30.0% | |
| TTCATCGTAGTACTTCATAA+TGG | + | chr4.1:58261665-58261684 | None:intergenic | 30.0% | |
| ! | CAATTTTTGCATTCTCTAGA+AGG | + | chr4.1:58261951-58261970 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATTCTC+AGG | + | chr4.1:58261531-58261550 | None:intergenic | 30.0% |
| ! | GTTCTATTATTGCTTGGTTT+TGG | - | chr4.1:58262208-58262227 | MS.gene35851:CDS | 30.0% |
| ! | TGAATGGAAAAAGAAGTGTA+AGG | - | chr4.1:58261397-58261416 | MS.gene35851:intron | 30.0% |
| ! | TTAAGCATTTTTGTGCATCT+CGG | - | chr4.1:58261120-58261139 | MS.gene35851:intron | 30.0% |
| !! | ACGTATGTTTTTGAATTCAG+GGG | - | chr4.1:58261492-58261511 | MS.gene35851:intron | 30.0% |
| !!! | TGTTTTTTATGTTAAGGGTC+GGG | - | chr4.1:58260172-58260191 | MS.gene35851:CDS | 30.0% |
| AAATCATCAATACGCTGGTA+AGG | + | chr4.1:58262104-58262123 | None:intergenic | 35.0% | |
| AAGAAGAGTTGAATCGGAAT+CGG | + | chr4.1:58259841-58259860 | None:intergenic | 35.0% | |
| AAGCAAGTAATAAGGAGAAC+TGG | + | chr4.1:58261886-58261905 | None:intergenic | 35.0% | |
| AGCTAAAATCATCAATACGC+TGG | + | chr4.1:58262109-58262128 | None:intergenic | 35.0% | |
| ATGAAGCACAAACATAGACA+CGG | - | chr4.1:58260401-58260420 | MS.gene35851:CDS | 35.0% | |
| ATTTCCAGGTTACATTACAG+AGG | - | chr4.1:58261828-58261847 | MS.gene35851:CDS | 35.0% | |
| CATTGTACAAAACCATGCAT+AGG | + | chr4.1:58261627-58261646 | None:intergenic | 35.0% | |
| CTACGATGAACTAAAGATTC+AGG | - | chr4.1:58261675-58261694 | MS.gene35851:intron | 35.0% | |
| GAAAAACCCAAAATGAGTGT+CGG | + | chr4.1:58260650-58260669 | None:intergenic | 35.0% | |
| GCTAAATGGTATTTGTCTTG+TGG | + | chr4.1:58259900-58259919 | None:intergenic | 35.0% | |
| TGAAGTGATTCTCTTCTTCT+GGG | - | chr4.1:58260968-58260987 | MS.gene35851:intron | 35.0% | |
| TGGTAGAAGAAGAGTTGAAT+CGG | + | chr4.1:58259847-58259866 | None:intergenic | 35.0% | |
| TGTGATTATGTTCCTATGCA+TGG | - | chr4.1:58261612-58261631 | MS.gene35851:intron | 35.0% | |
| TGTTTGGAGATCAACTGTAT+GGG | - | chr4.1:58261738-58261757 | MS.gene35851:CDS | 35.0% | |
| TTGAAGTGATTCTCTTCTTC+TGG | - | chr4.1:58260967-58260986 | MS.gene35851:intron | 35.0% | |
| ! | ATCAATGGTAATGTTGTGTC+TGG | - | chr4.1:58260857-58260876 | MS.gene35851:intron | 35.0% |
| ! | TAAGCATTTTTGTGCATCTC+GGG | - | chr4.1:58261121-58261140 | MS.gene35851:intron | 35.0% |
| ! | TGCTGTAACTTTACGGTTTT+AGG | + | chr4.1:58262132-58262151 | None:intergenic | 35.0% |
| !! | CTTCTGGTTCTATTATTGCT+TGG | - | chr4.1:58262202-58262221 | MS.gene35851:CDS | 35.0% |
| !! | GTTATTCTTAGTTTTCGGTC+TGG | - | chr4.1:58262179-58262198 | MS.gene35851:CDS | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr4.1:58261997-58262016 | MS.gene35851:CDS | 35.0% |
| !!! | TTTGTCTTGTGGTGCTTTTT+TGG | + | chr4.1:58259889-58259908 | None:intergenic | 35.0% |
| AAGTGATCAAGACACTGTTG+TGG | + | chr4.1:58260591-58260610 | None:intergenic | 40.0% | |
| ACATCCTCTGTAATGTAACC+TGG | + | chr4.1:58261835-58261854 | None:intergenic | 40.0% | |
| ACTCTCAACTTCTTAAGGAC+TGG | - | chr4.1:58261857-58261876 | MS.gene35851:CDS | 40.0% | |
| AGGTTGTGAGGGATTGAATT+GGG | - | chr4.1:58260565-58260584 | MS.gene35851:intron | 40.0% | |
| AGTCCTTAAGAAGTTGAGAG+TGG | + | chr4.1:58261858-58261877 | None:intergenic | 40.0% | |
| ATACTGTGGGAACAATCAAG+TGG | - | chr4.1:58261761-58261780 | MS.gene35851:CDS | 40.0% | |
| ATCAACTGTATGGGATACTG+TGG | - | chr4.1:58261747-58261766 | MS.gene35851:CDS | 40.0% | |
| CTCAAATTATCATCGGTGAC+AGG | + | chr4.1:58260442-58260461 | None:intergenic | 40.0% | |
| CTGTTTGGAGATCAACTGTA+TGG | - | chr4.1:58261737-58261756 | MS.gene35851:CDS | 40.0% | |
| CTTCTACCATCATCATCTTC+AGG | - | chr4.1:58259858-58259877 | MS.gene35851:CDS | 40.0% | |
| GAGTGCAAATCTCTACTTTG+CGG | - | chr4.1:58261582-58261601 | MS.gene35851:intron | 40.0% | |
| GCTTCGGTTATTTACTTCCA+TGG | - | chr4.1:58259943-58259962 | MS.gene35851:CDS | 40.0% | |
| GTATGGTGTCTGACATATGT+CGG | - | chr4.1:58260760-58260779 | MS.gene35851:intron | 40.0% | |
| GTTGTTCCTGAAGATGATGA+TGG | + | chr4.1:58259867-58259886 | None:intergenic | 40.0% | |
| GTTTACACACAAGATGTCTC+CGG | - | chr4.1:58261550-58261569 | MS.gene35851:intron | 40.0% | |
| TACACGGTCCAAAATTCTTC+CGG | - | chr4.1:58262025-58262044 | MS.gene35851:CDS | 40.0% | |
| TAGGTTGTGAGGGATTGAAT+TGG | - | chr4.1:58260564-58260583 | MS.gene35851:intron | 40.0% | |
| TAGTATTACTTGGGCATCTC+AGG | - | chr4.1:58261162-58261181 | MS.gene35851:intron | 40.0% | |
| TATACGGCTGCACATATCAA+TGG | - | chr4.1:58260842-58260861 | MS.gene35851:intron | 40.0% | |
| TATATGCAAGCTGTCATTGC+TGG | - | chr4.1:58260308-58260327 | MS.gene35851:CDS | 40.0% | |
| TCAACTGTATGGGATACTGT+GGG | - | chr4.1:58261748-58261767 | MS.gene35851:CDS | 40.0% | |
| TGTCCACTCTCAACTTCTTA+AGG | - | chr4.1:58261852-58261871 | MS.gene35851:CDS | 40.0% | |
| ! | AATGGTAATGTTGTGTCTGG+TGG | - | chr4.1:58260860-58260879 | MS.gene35851:intron | 40.0% |
| ! | AGAGATTTGCACTCTTTTGC+AGG | + | chr4.1:58261576-58261595 | None:intergenic | 40.0% |
| ! | ATCTCTGTCCGGAAGAATTT+TGG | + | chr4.1:58262036-58262055 | None:intergenic | 40.0% |
| ! | ATGGGAGTGTGAAACCAATT+AGG | - | chr4.1:58260927-58260946 | MS.gene35851:intron | 40.0% |
| ! | CGTTTTCCGACACTCATTTT+GGG | - | chr4.1:58260641-58260660 | MS.gene35851:intron | 40.0% |
| ! | CTAGAAGGTATACTGCTGTA+AGG | + | chr4.1:58261936-58261955 | None:intergenic | 40.0% |
| ! | GCTGTTGTTTATATGCTCGT+TGG | - | chr4.1:58260035-58260054 | MS.gene35851:CDS | 40.0% |
| ! | GTTTTGCATACCGACCAATT+AGG | - | chr4.1:58261309-58261328 | MS.gene35851:intron | 40.0% |
| ! | TATATGCTCGTTGGTCTCTT+TGG | - | chr4.1:58260044-58260063 | MS.gene35851:CDS | 40.0% |
| ! | TTTTATGTTAAGGGTCGGGT+CGG | - | chr4.1:58260176-58260195 | MS.gene35851:CDS | 40.0% |
| !! | ACACTACTGACTTGTCTCTT+GGG | - | chr4.1:58262063-58262082 | MS.gene35851:CDS | 40.0% |
| !! | CCAAAATGAGTGTCGGAAAA+CGG | + | chr4.1:58260643-58260662 | None:intergenic | 40.0% |
| ACAGCTTGCATATACCTCTC+AGG | + | chr4.1:58260302-58260321 | None:intergenic | 45.0% | |
| ACCTATTTCATCCTCGGCTT+CGG | - | chr4.1:58259927-58259946 | MS.gene35851:CDS | 45.0% | |
| AGACAAGTCAGTAGTGTGAC+AGG | + | chr4.1:58262060-58262079 | None:intergenic | 45.0% | |
| ATGGACTCTGCCTAATTGGT+CGG | + | chr4.1:58261322-58261341 | None:intergenic | 45.0% | |
| CTCCAAACAGATCCAGTCAA+AGG | + | chr4.1:58261727-58261746 | None:intergenic | 45.0% | |
| CTCGGCATGCTGTAACTTTA+CGG | + | chr4.1:58262139-58262158 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCCTACA+CGG | - | chr4.1:58262009-58262028 | MS.gene35851:CDS | 45.0% | |
| CTGTGCTTCATAGGTTGTGA+GGG | - | chr4.1:58260554-58260573 | MS.gene35851:intron | 45.0% | |
| GAAGTAAATAACCGAAGCCG+AGG | + | chr4.1:58259941-58259960 | None:intergenic | 45.0% | |
| GGTTCTATTGTTGGATCTGC+TGG | - | chr4.1:58260269-58260288 | MS.gene35851:CDS | 45.0% | |
| GTAGGCATCCTAAGAAGAGA+GGG | + | chr4.1:58262008-58262027 | None:intergenic | 45.0% | |
| GTCCTTTGACTGGATCTGTT+TGG | - | chr4.1:58261722-58261741 | MS.gene35851:intron | 45.0% | |
| GTGACACTCGCAATATTTCC+AGG | - | chr4.1:58261814-58261833 | MS.gene35851:CDS | 45.0% | |
| GTGGGAACAATCAAGTGGTA+TGG | - | chr4.1:58261766-58261785 | MS.gene35851:CDS | 45.0% | |
| TCTGTGCTTCATAGGTTGTG+AGG | - | chr4.1:58260553-58260572 | MS.gene35851:intron | 45.0% | |
| TGTAGGCATCCTAAGAAGAG+AGG | + | chr4.1:58262009-58262028 | None:intergenic | 45.0% | |
| TGTCAGTGTCGTGTCATACA+CGG | - | chr4.1:58260490-58260509 | MS.gene35851:CDS | 45.0% | |
| TGTCTCTTGGGGCTTACAAA+TGG | - | chr4.1:58262075-58262094 | MS.gene35851:CDS | 45.0% | |
| TTGGTGCAGGGTTCTATTGT+TGG | - | chr4.1:58260260-58260279 | MS.gene35851:CDS | 45.0% | |
| TTTATGTTAAGGGTCGGGTC+GGG | - | chr4.1:58260177-58260196 | MS.gene35851:CDS | 45.0% | |
| ! | ATTTGCACTCTTTTGCAGGC+CGG | + | chr4.1:58261572-58261591 | None:intergenic | 45.0% |
| ! | CCGTTTTCCGACACTCATTT+TGG | - | chr4.1:58260640-58260659 | MS.gene35851:intron | 45.0% |
| ! | GGAAGAATTTTGGACCGTGT+AGG | + | chr4.1:58262026-58262045 | None:intergenic | 45.0% |
| ! | TCAGATGGACTCTGCCTAAT+TGG | + | chr4.1:58261326-58261345 | None:intergenic | 45.0% |
| !! | CACACTACTGACTTGTCTCT+TGG | - | chr4.1:58262062-58262081 | MS.gene35851:CDS | 45.0% |
| !! | CACTACTGACTTGTCTCTTG+GGG | - | chr4.1:58262064-58262083 | MS.gene35851:CDS | 45.0% |
| !! | GGTGGGTTTTATGTTGCTGT+TGG | - | chr4.1:58260206-58260225 | MS.gene35851:CDS | 45.0% |
| !! | TATGTTGCTGTTGGTGCTGT+TGG | - | chr4.1:58260215-58260234 | MS.gene35851:CDS | 45.0% |
| !! | TTAGTTTTCGGTCTGGCTTC+TGG | - | chr4.1:58262186-58262205 | MS.gene35851:CDS | 45.0% |
| AAAGATTCAGGCAGTCGCTG+TGG | - | chr4.1:58261687-58261706 | MS.gene35851:intron | 50.0% | |
| ACCGAAGCCGAGGATGAAAT+AGG | + | chr4.1:58259931-58259950 | None:intergenic | 50.0% | |
| ACTCACAATCCCAGCAGTCT+CGG | + | chr4.1:58262157-58262176 | None:intergenic | 50.0% | |
| ATGCGATCAACGCTTGCTTC+AGG | + | chr4.1:58260011-58260030 | None:intergenic | 50.0% | |
| CACCAATGCATCAGCAACAC+CGG | + | chr4.1:58260246-58260265 | None:intergenic | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | + | chr4.1:58260540-58260559 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr4.1:58259963-58259982 | None:intergenic | 50.0% | |
| GGTCGGTATGCAAAACTACG+AGG | + | chr4.1:58261305-58261324 | None:intergenic | 50.0% | |
| GTCTGGTGGTCATGTTTGTG+CGG | - | chr4.1:58260874-58260893 | MS.gene35851:intron | 50.0% | |
| GTGTGACAGGAATCTCTGTC+CGG | + | chr4.1:58262047-58262066 | None:intergenic | 50.0% | |
| TCCTCAGATTAGGTGTGTCC+CGG | + | chr4.1:58260530-58260549 | None:intergenic | 50.0% | |
| TGCGATCAACGCTTGCTTCA+GGG | + | chr4.1:58260010-58260029 | None:intergenic | 50.0% | |
| TGGTGTCTGACATATGTCGG+TGG | - | chr4.1:58260763-58260782 | MS.gene35851:intron | 50.0% | |
| ! | CATATGTCGGTGGTGTCAGA+TGG | - | chr4.1:58260773-58260792 | MS.gene35851:intron | 50.0% |
| ! | GTTGCTGATGCATTGGTGCA+GGG | - | chr4.1:58260248-58260267 | MS.gene35851:CDS | 50.0% |
| ! | TGTTGCTGATGCATTGGTGC+AGG | - | chr4.1:58260247-58260266 | MS.gene35851:CDS | 50.0% |
| !! | CTGTAAGGCTTTTGCCGACT+AGG | + | chr4.1:58261921-58261940 | None:intergenic | 50.0% |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | - | chr4.1:58260545-58260564 | MS.gene35851:intron | 50.0% |
| !! | GTTGGTGCTGTTGGACTTTC+CGG | - | chr4.1:58260224-58260243 | MS.gene35851:CDS | 50.0% |
| !! | TTCCGGTGTTGCTGATGCAT+TGG | - | chr4.1:58260241-58260260 | MS.gene35851:CDS | 50.0% |
| ACCGGGACACACCTAATCTG+AGG | - | chr4.1:58260526-58260545 | MS.gene35851:CDS | 55.0% | |
| GACGACAGCAGTCCTTTGAC+TGG | - | chr4.1:58261712-58261731 | MS.gene35851:intron | 55.0% | |
| TACAGCATGCCGAGACTGCT+GGG | - | chr4.1:58262145-58262164 | MS.gene35851:CDS | 55.0% | |
| TTACAGCATGCCGAGACTGC+TGG | - | chr4.1:58262144-58262163 | MS.gene35851:CDS | 55.0% | |
| ! | AAGGGTCGGGTCGGGTTTTA+TGG | - | chr4.1:58260185-58260204 | MS.gene35851:CDS | 55.0% |
| ! | ATTGCTGGCACTGCTGCTTC+TGG | - | chr4.1:58260323-58260342 | MS.gene35851:CDS | 55.0% |
| ! | TCGGTGACAGGTGTCGTGTT+TGG | + | chr4.1:58260430-58260449 | None:intergenic | 55.0% |
| !! | GTCGGGTCGGGTTTTATGGT+GGG | - | chr4.1:58260189-58260208 | MS.gene35851:CDS | 55.0% |
| ACGGATGCGTGTCTGACACC+GGG | - | chr4.1:58260509-58260528 | MS.gene35851:CDS | 60.0% | |
| CACGGATGCGTGTCTGACAC+CGG | - | chr4.1:58260508-58260527 | MS.gene35851:CDS | 60.0% | |
| CTGCTGGTGAGTTGCCTGAG+AGG | - | chr4.1:58260285-58260304 | MS.gene35851:CDS | 60.0% | |
| !! | GGTCGGGTCGGGTTTTATGG+TGG | - | chr4.1:58260188-58260207 | MS.gene35851:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 58259828 | 58262239 | 58259828 | ID=MS.gene35851 |
| chr4.1 | mRNA | 58259828 | 58262239 | 58259828 | ID=MS.gene35851.t1;Parent=MS.gene35851 |
| chr4.1 | exon | 58261994 | 58262239 | 58261994 | ID=MS.gene35851.t1.exon1;Parent=MS.gene35851.t1 |
| chr4.1 | CDS | 58261994 | 58262239 | 58261994 | ID=cds.MS.gene35851.t1;Parent=MS.gene35851.t1 |
| chr4.1 | exon | 58261723 | 58261879 | 58261723 | ID=MS.gene35851.t1.exon2;Parent=MS.gene35851.t1 |
| chr4.1 | CDS | 58261723 | 58261879 | 58261723 | ID=cds.MS.gene35851.t1;Parent=MS.gene35851.t1 |
| chr4.1 | exon | 58259828 | 58260555 | 58259828 | ID=MS.gene35851.t1.exon3;Parent=MS.gene35851.t1 |
| chr4.1 | CDS | 58259828 | 58260555 | 58259828 | ID=cds.MS.gene35851.t1;Parent=MS.gene35851.t1 |
| Gene Sequence |
| Protein sequence |
