Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36115.t1 | XP_003628404.1 | 95.4 | 219 | 10 | 0 | 1 | 219 | 1 | 219 | 1.90E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36115.t1 | P49332 | 68.8 | 218 | 67 | 1 | 3 | 219 | 4 | 221 | 1.3e-82 | 307.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36115.t1 | G7LB15 | 95.4 | 219 | 10 | 0 | 1 | 219 | 1 | 219 | 1.4e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050762 | MS.gene36115 | 0.815999 | 6.93E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene36115 | 0.816318 | 5.88E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene36115 | 0.835027 | 2.13E-56 | -1.69E-46 |
| MS.gene052858 | MS.gene36115 | 0.806376 | 8.48E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene36115 | 0.819347 | 1.22E-52 | -1.69E-46 |
| MS.gene05462 | MS.gene36115 | 0.819035 | 1.43E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene36115 | -0.801917 | 7.18E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene36115 | 0.831026 | 2.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36115.t1 | MTR_8g056940 | 95.434 | 219 | 10 | 0 | 1 | 219 | 1 | 219 | 5.67e-154 | 426 |
| MS.gene36115.t1 | MTR_2g070060 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 1.91e-104 | 300 |
| MS.gene36115.t1 | MTR_2g070070 | 64.384 | 219 | 78 | 0 | 1 | 219 | 1 | 219 | 6.11e-102 | 294 |
| MS.gene36115.t1 | MTR_2g070180 | 64.953 | 214 | 75 | 0 | 1 | 214 | 1 | 214 | 9.00e-101 | 291 |
| MS.gene36115.t1 | MTR_4g124130 | 64.091 | 220 | 78 | 1 | 1 | 219 | 1 | 220 | 1.81e-99 | 288 |
| MS.gene36115.t1 | MTR_2g070150 | 66.832 | 202 | 67 | 0 | 1 | 202 | 1 | 202 | 1.95e-98 | 285 |
| MS.gene36115.t1 | MTR_2g070110 | 62.557 | 219 | 81 | 1 | 1 | 219 | 1 | 218 | 4.83e-96 | 279 |
| MS.gene36115.t1 | MTR_2g070130 | 59.361 | 219 | 89 | 0 | 1 | 219 | 1 | 219 | 4.84e-96 | 279 |
| MS.gene36115.t1 | MTR_2g070140 | 65.025 | 203 | 71 | 0 | 17 | 219 | 1 | 203 | 8.30e-96 | 278 |
| MS.gene36115.t1 | MTR_0186s0030 | 96.454 | 141 | 5 | 0 | 1 | 141 | 1 | 141 | 1.20e-94 | 273 |
| MS.gene36115.t1 | MTR_2g070200 | 61.009 | 218 | 83 | 2 | 1 | 216 | 1 | 218 | 2.26e-92 | 270 |
| MS.gene36115.t1 | MTR_2g070210 | 59.722 | 216 | 85 | 1 | 1 | 214 | 1 | 216 | 2.10e-91 | 268 |
| MS.gene36115.t1 | MTR_3g467420 | 55.349 | 215 | 96 | 0 | 5 | 219 | 10 | 224 | 2.51e-91 | 267 |
| MS.gene36115.t1 | MTR_3g467430 | 54.839 | 217 | 98 | 0 | 3 | 219 | 8 | 224 | 8.36e-91 | 266 |
| MS.gene36115.t1 | MTR_2g070120 | 57.895 | 209 | 88 | 0 | 1 | 209 | 1 | 209 | 6.39e-84 | 248 |
| MS.gene36115.t1 | MTR_5g076900 | 51.402 | 214 | 102 | 2 | 2 | 214 | 4 | 216 | 9.97e-73 | 220 |
| MS.gene36115.t1 | MTR_1g090060 | 40.394 | 203 | 116 | 3 | 11 | 209 | 10 | 211 | 2.06e-44 | 148 |
| MS.gene36115.t1 | MTR_5g037380 | 41.629 | 221 | 114 | 6 | 2 | 210 | 3 | 220 | 9.86e-44 | 146 |
| MS.gene36115.t1 | MTR_7g065750 | 40.183 | 219 | 122 | 5 | 3 | 217 | 6 | 219 | 1.29e-43 | 146 |
| MS.gene36115.t1 | MTR_4g059730 | 39.906 | 213 | 123 | 3 | 1 | 209 | 1 | 212 | 2.15e-43 | 145 |
| MS.gene36115.t1 | MTR_5g040430 | 35.071 | 211 | 130 | 2 | 2 | 205 | 5 | 215 | 2.18e-43 | 145 |
| MS.gene36115.t1 | MTR_4g019780 | 37.799 | 209 | 125 | 4 | 3 | 208 | 7 | 213 | 4.63e-43 | 144 |
| MS.gene36115.t1 | MTR_7g065720 | 39.091 | 220 | 127 | 5 | 3 | 217 | 6 | 223 | 5.05e-43 | 144 |
| MS.gene36115.t1 | MTR_7g065660 | 38.991 | 218 | 125 | 5 | 3 | 217 | 6 | 218 | 5.39e-43 | 144 |
| MS.gene36115.t1 | MTR_7g065740 | 41.905 | 210 | 116 | 4 | 3 | 208 | 6 | 213 | 1.05e-42 | 144 |
| MS.gene36115.t1 | MTR_8g087425 | 34.862 | 218 | 139 | 2 | 2 | 217 | 3 | 219 | 7.78e-42 | 141 |
| MS.gene36115.t1 | MTR_3g099757 | 45.455 | 176 | 94 | 2 | 1 | 175 | 1 | 175 | 9.70e-42 | 141 |
| MS.gene36115.t1 | MTR_7g065630 | 45.161 | 186 | 97 | 5 | 3 | 187 | 24 | 205 | 1.96e-41 | 141 |
| MS.gene36115.t1 | MTR_1g090100 | 41.584 | 202 | 113 | 3 | 11 | 208 | 9 | 209 | 5.18e-40 | 137 |
| MS.gene36115.t1 | MTR_4g019790 | 39.698 | 199 | 115 | 4 | 4 | 199 | 7 | 203 | 5.18e-40 | 137 |
| MS.gene36115.t1 | MTR_1g090070 | 39.070 | 215 | 117 | 5 | 4 | 209 | 9 | 218 | 1.09e-39 | 136 |
| MS.gene36115.t1 | MTR_7g065270 | 38.942 | 208 | 119 | 5 | 13 | 217 | 16 | 218 | 4.63e-39 | 134 |
| MS.gene36115.t1 | MTR_8g087410 | 45.806 | 155 | 83 | 1 | 3 | 157 | 5 | 158 | 5.13e-39 | 134 |
| MS.gene36115.t1 | MTR_7g065710 | 47.170 | 159 | 81 | 3 | 1 | 158 | 1 | 157 | 1.30e-38 | 133 |
| MS.gene36115.t1 | MTR_8g061950 | 40.909 | 198 | 108 | 5 | 7 | 195 | 8 | 205 | 7.36e-38 | 131 |
| MS.gene36115.t1 | MTR_1g090090 | 40.594 | 202 | 115 | 4 | 11 | 208 | 10 | 210 | 8.60e-38 | 131 |
| MS.gene36115.t1 | MTR_7g065265 | 37.981 | 208 | 121 | 5 | 13 | 217 | 16 | 218 | 9.94e-38 | 131 |
| MS.gene36115.t1 | MTR_7g065590 | 36.058 | 208 | 125 | 5 | 13 | 217 | 16 | 218 | 2.82e-37 | 130 |
| MS.gene36115.t1 | MTR_7g065290 | 37.981 | 208 | 121 | 5 | 13 | 217 | 16 | 218 | 5.98e-37 | 129 |
| MS.gene36115.t1 | MTR_6g080440 | 39.130 | 207 | 114 | 6 | 19 | 216 | 16 | 219 | 9.05e-37 | 128 |
| MS.gene36115.t1 | MTR_7g065230 | 38.942 | 208 | 114 | 7 | 13 | 217 | 16 | 213 | 1.37e-35 | 125 |
| MS.gene36115.t1 | MTR_7g065680 | 46.497 | 157 | 81 | 3 | 3 | 158 | 6 | 160 | 1.87e-35 | 125 |
| MS.gene36115.t1 | MTR_1g090150 | 43.671 | 158 | 83 | 4 | 3 | 157 | 2 | 156 | 2.94e-35 | 124 |
| MS.gene36115.t1 | MTR_1g115195 | 37.624 | 202 | 116 | 4 | 7 | 201 | 6 | 204 | 7.24e-35 | 123 |
| MS.gene36115.t1 | MTR_7g065600 | 39.362 | 188 | 109 | 4 | 3 | 187 | 6 | 191 | 3.08e-34 | 122 |
| MS.gene36115.t1 | MTR_7g065700 | 47.742 | 155 | 78 | 3 | 3 | 156 | 6 | 158 | 4.24e-34 | 122 |
| MS.gene36115.t1 | MTR_7g065640 | 45.652 | 138 | 73 | 2 | 3 | 139 | 6 | 142 | 1.35e-33 | 120 |
| MS.gene36115.t1 | MTR_7g065260 | 37.766 | 188 | 112 | 4 | 3 | 187 | 13 | 198 | 2.75e-31 | 114 |
| MS.gene36115.t1 | MTR_2g072120 | 65.278 | 72 | 25 | 0 | 47 | 118 | 1 | 72 | 3.96e-29 | 104 |
| MS.gene36115.t1 | MTR_4g043640 | 70.968 | 62 | 12 | 2 | 131 | 190 | 29 | 86 | 2.23e-23 | 90.1 |
| MS.gene36115.t1 | MTR_5g037390 | 45.205 | 73 | 38 | 1 | 28 | 98 | 11 | 83 | 5.95e-12 | 60.5 |
| MS.gene36115.t1 | MTR_7g100320 | 27.700 | 213 | 136 | 8 | 10 | 216 | 32 | 232 | 1.20e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36115.t1 | AT1G78380 | 64.352 | 216 | 77 | 0 | 1 | 216 | 1 | 216 | 3.99e-99 | 287 |
| MS.gene36115.t1 | AT1G78370 | 60.465 | 215 | 85 | 0 | 1 | 215 | 1 | 215 | 4.04e-97 | 282 |
| MS.gene36115.t1 | AT1G17180 | 60.274 | 219 | 87 | 0 | 1 | 219 | 1 | 219 | 5.49e-96 | 279 |
| MS.gene36115.t1 | AT1G17170 | 61.187 | 219 | 84 | 1 | 1 | 219 | 1 | 218 | 8.20e-96 | 278 |
| MS.gene36115.t1 | AT1G78340 | 61.682 | 214 | 82 | 0 | 1 | 214 | 1 | 214 | 6.92e-95 | 276 |
| MS.gene36115.t1 | AT1G78360 | 60.000 | 220 | 87 | 1 | 1 | 219 | 1 | 220 | 3.12e-93 | 272 |
| MS.gene36115.t1 | AT1G78320 | 59.813 | 214 | 86 | 0 | 1 | 214 | 1 | 214 | 1.58e-89 | 263 |
| MS.gene36115.t1 | AT1G17190 | 56.542 | 214 | 93 | 0 | 3 | 216 | 4 | 217 | 1.29e-86 | 255 |
| MS.gene36115.t1 | AT1G53680 | 52.074 | 217 | 102 | 2 | 5 | 219 | 8 | 224 | 2.27e-81 | 242 |
| MS.gene36115.t1 | AT3G43800 | 52.273 | 220 | 101 | 3 | 3 | 218 | 4 | 223 | 5.41e-73 | 221 |
| MS.gene36115.t1 | AT1G78320 | 50.935 | 214 | 78 | 1 | 1 | 214 | 1 | 187 | 8.97e-69 | 209 |
| MS.gene36115.t1 | AT3G09270 | 47.619 | 189 | 94 | 4 | 3 | 187 | 5 | 192 | 1.03e-46 | 154 |
| MS.gene36115.t1 | AT2G29420 | 39.462 | 223 | 119 | 6 | 2 | 217 | 7 | 220 | 1.18e-45 | 151 |
| MS.gene36115.t1 | AT1G10370 | 38.889 | 216 | 124 | 4 | 2 | 209 | 3 | 218 | 1.69e-43 | 146 |
| MS.gene36115.t1 | AT1G10360 | 39.910 | 223 | 123 | 5 | 2 | 216 | 3 | 222 | 1.84e-43 | 145 |
| MS.gene36115.t1 | AT1G74590 | 34.545 | 220 | 132 | 4 | 5 | 215 | 8 | 224 | 4.98e-42 | 142 |
| MS.gene36115.t1 | AT1G59670 | 40.991 | 222 | 122 | 5 | 3 | 215 | 5 | 226 | 7.30e-42 | 142 |
| MS.gene36115.t1 | AT2G29460 | 40.670 | 209 | 118 | 4 | 3 | 207 | 6 | 212 | 1.20e-41 | 141 |
| MS.gene36115.t1 | AT1G59700 | 40.741 | 216 | 119 | 5 | 3 | 209 | 5 | 220 | 2.71e-41 | 140 |
| MS.gene36115.t1 | AT2G29440 | 48.485 | 165 | 73 | 4 | 3 | 160 | 5 | 164 | 3.33e-41 | 140 |
| MS.gene36115.t1 | AT2G29480 | 44.720 | 161 | 85 | 2 | 3 | 160 | 6 | 165 | 1.54e-40 | 138 |
| MS.gene36115.t1 | AT1G27140 | 40.976 | 205 | 111 | 4 | 15 | 209 | 17 | 221 | 1.55e-40 | 139 |
| MS.gene36115.t1 | AT2G29450 | 48.466 | 163 | 77 | 4 | 3 | 160 | 5 | 165 | 2.71e-40 | 137 |
| MS.gene36115.t1 | AT1G27130 | 37.736 | 212 | 123 | 4 | 7 | 209 | 9 | 220 | 1.34e-39 | 136 |
| MS.gene36115.t1 | AT2G29490 | 44.720 | 161 | 85 | 2 | 3 | 160 | 6 | 165 | 1.57e-39 | 135 |
| MS.gene36115.t1 | AT2G29470 | 37.500 | 216 | 128 | 5 | 7 | 217 | 10 | 223 | 8.18e-39 | 134 |
| MS.gene36115.t1 | AT5G62480 | 37.430 | 179 | 104 | 1 | 5 | 175 | 9 | 187 | 8.31e-38 | 132 |
| MS.gene36115.t1 | AT1G69920 | 36.323 | 223 | 126 | 6 | 7 | 218 | 37 | 254 | 1.98e-37 | 131 |
| MS.gene36115.t1 | AT1G69930 | 35.238 | 210 | 129 | 3 | 7 | 209 | 15 | 224 | 2.74e-35 | 125 |
| MS.gene36115.t1 | AT5G62480 | 29.050 | 179 | 92 | 2 | 5 | 175 | 9 | 160 | 2.10e-20 | 85.9 |
| MS.gene36115.t1 | AT5G62480 | 29.050 | 179 | 93 | 2 | 5 | 175 | 9 | 161 | 2.61e-20 | 85.5 |
Find 48 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCTCAAGCAAGATTT+TGG | 0.147771 | 8.3:+52457337 | MS.gene36115:CDS |
| ATGATGATGGATTCACAAAT+TGG | 0.232208 | 8.3:-52457252 | None:intergenic |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8.3:+52457123 | MS.gene36115:CDS |
| CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8.3:+52457923 | MS.gene36115:CDS |
| ACTGGAATCTTCTTGTGAAT+TGG | 0.280000 | 8.3:-52457210 | None:intergenic |
| AGAGTTGATTGAAGGCTTAA+AGG | 0.308675 | 8.3:+52457886 | MS.gene36115:CDS |
| TTTCTCATCAGCAACAGATT+TGG | 0.313491 | 8.3:-52458095 | None:intergenic |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8.3:-52457188 | None:intergenic |
| CTTGCTTGAGCTTTCTGATA+AGG | 0.352610 | 8.3:-52457330 | None:intergenic |
| GTGATGTTGGAGGGACGATA+TGG | 0.375492 | 8.3:+52457828 | MS.gene36115:CDS |
| GATGAATGGCTTAGTATGTT+TGG | 0.382908 | 8.3:+52457090 | MS.gene36115:CDS |
| AGTTAATATTGTTGGATGAA+TGG | 0.397050 | 8.3:+52457076 | MS.gene36115:CDS |
| GGCAGAGGAGTTAATATTGT+TGG | 0.402522 | 8.3:+52457068 | MS.gene36115:CDS |
| AGTGTGATAAACTGATTGTT+TGG | 0.402758 | 8.3:+52458041 | MS.gene36115:CDS |
| GAAGTTGCATAATTTCTCAT+AGG | 0.412746 | 8.3:-52458005 | None:intergenic |
| TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | 8.3:-52457228 | None:intergenic |
| AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8.3:+52457856 | MS.gene36115:CDS |
| GATTCCAGTTCTTATCCATA+AGG | 0.427078 | 8.3:+52457224 | MS.gene36115:CDS |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8.3:+52457277 | MS.gene36115:CDS |
| ATGAATTTGTTGTTAACTAT+AGG | 0.433226 | 8.3:+52458125 | MS.gene36115:CDS |
| AATGTGTCACCACCAAAATA+AGG | 0.439985 | 8.3:-52457935 | None:intergenic |
| TGATGAGGTTTGGAAGGATA+AGG | 0.440755 | 8.3:+52457287 | MS.gene36115:CDS |
| GCAAAGAAAGAGTTGATTGA+AGG | 0.446921 | 8.3:+52457878 | MS.gene36115:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8.3:-52457982 | None:intergenic |
| ATTCCAGTTCTTATCCATAA+GGG | 0.462545 | 8.3:+52457225 | MS.gene36115:CDS |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8.3:-52457983 | None:intergenic |
| CTATAGGAAGAGGTTTGAGT+TGG | 0.471565 | 8.3:+52458141 | MS.gene36115:CDS |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | 8.3:+52457815 | MS.gene36115:intron |
| GTGTGATAAACTGATTGTTT+GGG | 0.488265 | 8.3:+52458042 | MS.gene36115:CDS |
| AATATACTCAACAATGATGA+TGG | 0.489877 | 8.3:-52457265 | None:intergenic |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8.3:+52457905 | MS.gene36115:CDS |
| AGGGATTAAGTATGAGTACA+AGG | 0.524364 | 8.3:+52457143 | MS.gene36115:CDS |
| TGATGTTGGAGGGACGATAT+GGG | 0.531020 | 8.3:+52457829 | MS.gene36115:CDS |
| TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | 8.3:+52458131 | MS.gene36115:CDS |
| ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8.3:+52458015 | MS.gene36115:CDS |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8.3:+52457281 | MS.gene36115:CDS |
| GGCAAAGAGATGCAAGCAAA+GGG | 0.548622 | 8.3:+52458063 | MS.gene36115:CDS |
| GTATGTTTGGCATGAGAGCA+AGG | 0.570950 | 8.3:+52457103 | MS.gene36115:CDS |
| CATGAGAGCAAGGATAGCAT+TGG | 0.573949 | 8.3:+52457113 | MS.gene36115:CDS |
| AGCTTTCTGATAAGGATCTG+AGG | 0.577878 | 8.3:-52457322 | None:intergenic |
| GTTGGAGGGACGATATGGGC+TGG | 0.580241 | 8.3:+52457833 | MS.gene36115:CDS |
| GCTTTCTGATAAGGATCTGA+GGG | 0.581759 | 8.3:-52457321 | None:intergenic |
| CATTGTTGAGTATATTGATG+AGG | 0.596226 | 8.3:+52457272 | MS.gene36115:CDS |
| GTTGTCTTTGACAATGGCAG+AGG | 0.605201 | 8.3:+52457053 | None:intergenic |
| GGGCAAAGAGATGCAAGCAA+AGG | 0.618800 | 8.3:+52458062 | MS.gene36115:CDS |
| TGTCACCACCAAAATAAGGT+TGG | 0.621870 | 8.3:-52457931 | None:intergenic |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.624324 | 8.3:+52457818 | MS.gene36115:intron |
| TGCAGGTTGGTGATGTTGGA+GGG | 0.629045 | 8.3:+52457819 | MS.gene36115:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTTC+TGG | - | chr8.3:52457426-52457445 | None:intergenic | 10.0% |
| !! | AAATGAAACTTTGAATCAAA+AGG | - | chr8.3:52457471-52457490 | None:intergenic | 20.0% |
| !! | AGAGAAAACAATAAAAAAGA+AGG | - | chr8.3:52457560-52457579 | None:intergenic | 20.0% |
| !! | TAATGAATTAGATAACATGA+AGG | + | chr8.3:52457531-52457550 | MS.gene36115:intron | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | - | chr8.3:52457985-52458004 | None:intergenic | 20.0% |
| !! | TATCCATATTATTAAAGACT+AGG | + | chr8.3:52457732-52457751 | MS.gene36115:intron | 20.0% |
| !! | TGTGTTAAAAAAAAAAATGC+AGG | + | chr8.3:52457802-52457821 | MS.gene36115:intron | 20.0% |
| !! | TTAAAAAAAAAAATGCAGGT+TGG | + | chr8.3:52457806-52457825 | MS.gene36115:intron | 20.0% |
| !!! | ATGAATTTGTTGTTAACTAT+AGG | + | chr8.3:52458125-52458144 | MS.gene36115:CDS | 20.0% |
| !!! | TTGTTTTCTCTAATATTCAA+TGG | + | chr8.3:52457569-52457588 | MS.gene36115:intron | 20.0% |
| ! | AATATACTCAACAATGATGA+TGG | - | chr8.3:52457268-52457287 | None:intergenic | 25.0% |
| ! | AGTTAATATTGTTGGATGAA+TGG | + | chr8.3:52457076-52457095 | MS.gene36115:CDS | 25.0% |
| ! | CTTCATATTTCATCAATGAA+TGG | + | chr8.3:52457688-52457707 | MS.gene36115:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | - | chr8.3:52457986-52458005 | None:intergenic | 25.0% |
| ! | TTTCTCTAATATTCAATGGA+TGG | + | chr8.3:52457573-52457592 | MS.gene36115:intron | 25.0% |
| !! | CAACCTAGTCTTTAATAATA+TGG | - | chr8.3:52457738-52457757 | None:intergenic | 25.0% |
| !!! | ACAAAAAGGTAAGTTTTGTT+AGG | + | chr8.3:52457373-52457392 | MS.gene36115:intron | 25.0% |
| !!! | GTACTGTTTTTACTTTTGAA+TGG | + | chr8.3:52457496-52457515 | MS.gene36115:intron | 25.0% |
| AAAGAGAGATGAGATTGAAT+TGG | + | chr8.3:52457856-52457875 | MS.gene36115:CDS | 30.0% | |
| AGTGTGATAAACTGATTGTT+TGG | + | chr8.3:52458041-52458060 | MS.gene36115:CDS | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | + | chr8.3:52458015-52458034 | MS.gene36115:CDS | 30.0% | |
| ATTCCAGTTCTTATCCATAA+GGG | + | chr8.3:52457225-52457244 | MS.gene36115:CDS | 30.0% | |
| CATTGTTGAGTATATTGATG+AGG | + | chr8.3:52457272-52457291 | MS.gene36115:CDS | 30.0% | |
| GAAGTTGCATAATTTCTCAT+AGG | - | chr8.3:52458008-52458027 | None:intergenic | 30.0% | |
| GTGTGATAAACTGATTGTTT+GGG | + | chr8.3:52458042-52458061 | MS.gene36115:CDS | 30.0% | |
| TTGAGTATATTGATGAGGTT+TGG | + | chr8.3:52457277-52457296 | MS.gene36115:CDS | 30.0% | |
| ! | TTGTTGTTAACTATAGGAAG+AGG | + | chr8.3:52458131-52458150 | MS.gene36115:CDS | 30.0% |
| !! | ATGATGATGGATTCACAAAT+TGG | - | chr8.3:52457255-52457274 | None:intergenic | 30.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | - | chr8.3:52457191-52457210 | None:intergenic | 30.0% |
| !!! | GTAAGTTTTGTTAGGTACTA+AGG | + | chr8.3:52457381-52457400 | MS.gene36115:intron | 30.0% |
| AAGGAATTAGAGAATGTGCT+TGG | + | chr8.3:52457905-52457924 | MS.gene36115:CDS | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | - | chr8.3:52457938-52457957 | None:intergenic | 35.0% | |
| ACTGGAATCTTCTTGTGAAT+TGG | - | chr8.3:52457213-52457232 | None:intergenic | 35.0% | |
| AGGGATTAAGTATGAGTACA+AGG | + | chr8.3:52457143-52457162 | MS.gene36115:CDS | 35.0% | |
| ATACTCATATCTCACTAGGA+AGG | - | chr8.3:52457658-52457677 | None:intergenic | 35.0% | |
| GATGAATGGCTTAGTATGTT+TGG | + | chr8.3:52457090-52457109 | MS.gene36115:CDS | 35.0% | |
| GATTCCAGTTCTTATCCATA+AGG | + | chr8.3:52457224-52457243 | MS.gene36115:CDS | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | + | chr8.3:52457281-52457300 | MS.gene36115:CDS | 35.0% | |
| TCCTAGTGAGATATGAGTAT+AGG | + | chr8.3:52457658-52457677 | MS.gene36115:intron | 35.0% | |
| TCCTATACTCATATCTCACT+AGG | - | chr8.3:52457662-52457681 | None:intergenic | 35.0% | |
| TTTCCCTTATGGATAAGAAC+TGG | - | chr8.3:52457231-52457250 | None:intergenic | 35.0% | |
| TTTCTCATCAGCAACAGATT+TGG | - | chr8.3:52458098-52458117 | None:intergenic | 35.0% | |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | + | chr8.3:52457337-52457356 | MS.gene36115:CDS | 35.0% |
| ! | AGAGTTGATTGAAGGCTTAA+AGG | + | chr8.3:52457886-52457905 | MS.gene36115:CDS | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | + | chr8.3:52457975-52457994 | MS.gene36115:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | + | chr8.3:52457338-52457357 | MS.gene36115:CDS | 35.0% |
| ! | GCAAAGAAAGAGTTGATTGA+AGG | + | chr8.3:52457878-52457897 | MS.gene36115:CDS | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | + | chr8.3:52457359-52457378 | MS.gene36115:CDS | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | + | chr8.3:52457939-52457958 | MS.gene36115:CDS | 35.0% |
| !!! | CACAAATTGGTTTTCCCTTA+TGG | - | chr8.3:52457242-52457261 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGTGACACATT+TGG | + | chr8.3:52457938-52457957 | MS.gene36115:CDS | 35.0% |
| AGCTTTCTGATAAGGATCTG+AGG | - | chr8.3:52457325-52457344 | None:intergenic | 40.0% | |
| CATATCTCACTAGGAAGGAA+AGG | - | chr8.3:52457653-52457672 | None:intergenic | 40.0% | |
| CTATAGGAAGAGGTTTGAGT+TGG | + | chr8.3:52458141-52458160 | MS.gene36115:CDS | 40.0% | |
| CTTGCTTGAGCTTTCTGATA+AGG | - | chr8.3:52457333-52457352 | None:intergenic | 40.0% | |
| GCTTTCTGATAAGGATCTGA+GGG | - | chr8.3:52457324-52457343 | None:intergenic | 40.0% | |
| GGCAGAGGAGTTAATATTGT+TGG | + | chr8.3:52457068-52457087 | MS.gene36115:CDS | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | + | chr8.3:52457287-52457306 | MS.gene36115:CDS | 40.0% | |
| TGTCACCACCAAAATAAGGT+TGG | - | chr8.3:52457934-52457953 | None:intergenic | 40.0% | |
| !! | AAAATGCAGGTTGGTGATGT+TGG | + | chr8.3:52457815-52457834 | MS.gene36115:intron | 40.0% |
| !! | AGGATAGCATTGGCTGAAAA+AGG | + | chr8.3:52457123-52457142 | MS.gene36115:CDS | 40.0% |
| !! | CTTGGAGACCAACCTTATTT+TGG | + | chr8.3:52457923-52457942 | MS.gene36115:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | + | chr8.3:52457124-52457143 | MS.gene36115:CDS | 40.0% |
| CATGAGAGCAAGGATAGCAT+TGG | + | chr8.3:52457113-52457132 | MS.gene36115:CDS | 45.0% | |
| GGCAAAGAGATGCAAGCAAA+GGG | + | chr8.3:52458063-52458082 | MS.gene36115:CDS | 45.0% | |
| GTATGTTTGGCATGAGAGCA+AGG | + | chr8.3:52457103-52457122 | MS.gene36115:CDS | 45.0% | |
| TGATGTTGGAGGGACGATAT+GGG | + | chr8.3:52457829-52457848 | MS.gene36115:CDS | 45.0% | |
| !!! | GGAGACCAACCTTATTTTGG+TGG | + | chr8.3:52457926-52457945 | MS.gene36115:CDS | 45.0% |
| GGGCAAAGAGATGCAAGCAA+AGG | + | chr8.3:52458062-52458081 | MS.gene36115:CDS | 50.0% | |
| GTGATGTTGGAGGGACGATA+TGG | + | chr8.3:52457828-52457847 | MS.gene36115:CDS | 50.0% | |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | + | chr8.3:52457818-52457837 | MS.gene36115:intron | 50.0% |
| !! | TGCAGGTTGGTGATGTTGGA+GGG | + | chr8.3:52457819-52457838 | MS.gene36115:intron | 50.0% |
| GTTGGAGGGACGATATGGGC+TGG | + | chr8.3:52457833-52457852 | MS.gene36115:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 52457066 | 52458168 | 52457066 | ID=MS.gene36115 |
| chr8.3 | mRNA | 52457066 | 52458168 | 52457066 | ID=MS.gene36115.t1;Parent=MS.gene36115 |
| chr8.3 | exon | 52457066 | 52457380 | 52457066 | ID=MS.gene36115.t1.exon1;Parent=MS.gene36115.t1 |
| chr8.3 | CDS | 52457066 | 52457380 | 52457066 | ID=cds.MS.gene36115.t1;Parent=MS.gene36115.t1 |
| chr8.3 | exon | 52457824 | 52458168 | 52457824 | ID=MS.gene36115.t1.exon2;Parent=MS.gene36115.t1 |
| chr8.3 | CDS | 52457824 | 52458168 | 52457824 | ID=cds.MS.gene36115.t1;Parent=MS.gene36115.t1 |
| Gene Sequence |
| Protein sequence |
