AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37076

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37076.t1 MTR_1g054035 97.656 384 9 0 1 384 1 384 0.0 782
MS.gene37076.t1 MTR_7g093200 79.427 384 77 2 1 383 51 433 0.0 652
MS.gene37076.t1 MTR_1g111880 68.750 384 98 3 1 384 5 366 0.0 526
MS.gene37076.t1 MTR_5g071170 38.066 331 185 7 18 345 30 343 4.66e-70 225
MS.gene37076.t1 MTR_7g068780 39.009 323 177 8 26 345 92 397 1.66e-64 212
MS.gene37076.t1 MTR_4g015630 38.080 323 180 8 26 345 86 391 4.19e-64 211
MS.gene37076.t1 MTR_3g464330 38.080 323 180 6 26 345 29 334 2.28e-63 207
MS.gene37076.t1 MTR_7g068780 33.948 271 156 7 26 295 92 340 2.04e-37 138
MS.gene37076.t1 MTR_4g130980 24.762 315 209 9 33 344 105 394 2.83e-21 95.5
MS.gene37076.t1 MTR_2g460790 24.642 349 220 11 33 371 106 421 3.57e-21 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37076.t1 AT3G12120 75.521 384 93 1 1 384 1 383 0.0 618
MS.gene37076.t1 AT3G12120 75.521 384 93 1 1 384 1 383 0.0 618
MS.gene37076.t1 AT3G11170 38.279 337 188 8 12 345 76 395 1.88e-68 223
MS.gene37076.t1 AT2G29980 39.628 323 175 7 26 345 28 333 5.15e-68 220
MS.gene37076.t1 AT5G05580 37.243 341 195 7 8 345 64 388 4.11e-65 214
MS.gene37076.t1 AT5G05580 35.736 333 195 7 6 335 62 378 8.30e-59 196
MS.gene37076.t1 AT2G29980 34.672 274 156 6 26 298 28 279 2.34e-42 150
MS.gene37076.t1 AT4G30950 24.355 349 221 12 10 344 76 395 2.16e-19 89.7

Find 109 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGGTTATTTGTGTTTA+TGG 0.112540 1.4:-39683275 MS.gene37076:CDS
TACTTAGCCTTCAATGTTTC+AGG 0.146010 1.4:-39683443 MS.gene37076:CDS
ATTTGGCGTGGCCCGTTTAT+TGG 0.151456 1.4:-39683772 MS.gene37076:CDS
AAAGGCTGTGAAACCAATTT+TGG 0.151699 1.4:-39683021 MS.gene37076:CDS
TCCACATAACCTCTCATATT+TGG 0.215212 1.4:-39683789 MS.gene37076:CDS
TGATAATATTCACCCAAAAT+TGG 0.233269 1.4:+39683008 None:intergenic
TCTTTCACGATCTGAGTAAA+TGG 0.246402 1.4:+39683376 None:intergenic
GCAACTGTGGATAGAGATTA+TGG 0.258170 1.4:-39683137 MS.gene37076:CDS
GTGAGATTAAAGGTGTTTAT+TGG 0.270914 1.4:-39682908 MS.gene37076:CDS
CCTTTGTGATGGAGGATTAG+AGG 0.278255 1.4:+39684003 None:intergenic
CGGGCTTTACCGTCTTGTTT+TGG 0.295294 1.4:-39683309 MS.gene37076:CDS
TTTGGCGTGGCCCGTTTATT+GGG 0.305802 1.4:-39683771 MS.gene37076:CDS
CTCCACATAGCTTTGTAAAT+AGG 0.306944 1.4:+39682972 None:intergenic
ATTCCACTTCTTATTGTCAA+TGG 0.340841 1.4:-39683251 MS.gene37076:CDS
ATAGGAAAATGATCGAATTA+AGG 0.343029 1.4:+39683877 None:intergenic
GGATTCTCGCAGTTTCTTAC+GGG 0.352225 1.4:-39683328 MS.gene37076:CDS
TCCTTGGATGGCCCAATAAA+CGG 0.372474 1.4:+39683760 None:intergenic
CAAATTTATGTTTCAGATGC+CGG 0.378498 1.4:-39683350 MS.gene37076:CDS
GGGATTCTCGCAGTTTCTTA+CGG 0.381488 1.4:-39683329 MS.gene37076:CDS
ATGCATTCTAACCGGACTTT+GGG 0.385924 1.4:-39683738 MS.gene37076:CDS
TGTTCTTCATTCATGCCTCT+TGG 0.389134 1.4:-39683648 MS.gene37076:CDS
GATGAAGGGAGTGAGATTAA+AGG 0.395313 1.4:-39682918 MS.gene37076:CDS
TCTGAGTAAATGGGTCCATA+TGG 0.415261 1.4:+39683386 None:intergenic
ATGCATTTAGTAATTATCAA+TGG 0.415395 1.4:-39683691 MS.gene37076:CDS
GATGCATTCTAACCGGACTT+TGG 0.420377 1.4:-39683739 MS.gene37076:CDS
TTGACTTCTCCAAGAGTGAA+TGG 0.422551 1.4:+39683932 None:intergenic
TTCCACTTCTTATTGTCAAT+GGG 0.423982 1.4:-39683250 MS.gene37076:CDS
TTTGGCCCAAGGTTTGAATT+GGG 0.432901 1.4:-39683291 MS.gene37076:CDS
AAAGTAATTTGTGGCTATGT+AGG 0.434971 1.4:+39683820 None:intergenic
AAATAACCCAATTCAAACCT+TGG 0.437716 1.4:+39683285 None:intergenic
CAATGGGTCGATGATTTAGT+TGG 0.443927 1.4:-39683674 MS.gene37076:CDS
TGCATTTAGTAATTATCAAT+GGG 0.449274 1.4:-39683690 MS.gene37076:CDS
CCTTGGATGGCCCAATAAAC+GGG 0.460124 1.4:+39683761 None:intergenic
GAATCATAATGAGGCAAAGC+AGG 0.463757 1.4:+39683191 None:intergenic
AGCTATGTGGAGAGAGGCTA+AGG 0.464534 1.4:-39682961 MS.gene37076:CDS
ATCCAAGGATGCATTCTAAC+CGG 0.466935 1.4:-39683746 MS.gene37076:CDS
TCATTATGATTCTACCGAAT+GGG 0.467077 1.4:-39683180 MS.gene37076:CDS
ATGATTCTACCGAATGGGAT+TGG 0.467298 1.4:-39683175 MS.gene37076:CDS
ACAAAACCACCATTCACTCT+TGG 0.469303 1.4:-39683941 MS.gene37076:CDS
GCCTCACATTACGACCCATA+TGG 0.473488 1.4:-39683401 MS.gene37076:CDS
AAATTTATGTTTCAGATGCC+GGG 0.491484 1.4:-39683349 MS.gene37076:CDS
CTTTATGTTGAGGCTGATGA+AGG 0.491848 1.4:-39682933 MS.gene37076:CDS
GGATTGGATGAGAGGTGCTT+TGG 0.492368 1.4:-39683159 MS.gene37076:CDS
CTTTCACGATCTGAGTAAAT+GGG 0.494362 1.4:+39683377 None:intergenic
CTCATTATGATTCTACCGAA+TGG 0.500841 1.4:-39683181 MS.gene37076:CDS
GTAGGCAAGGATTGATGCTA+TGG 0.503319 1.4:+39683838 None:intergenic
ACCTCTCATCCAATCCCATT+CGG 0.506080 1.4:+39683166 None:intergenic
GTCCGGTTAGAATGCATCCT+TGG 0.507186 1.4:+39683744 None:intergenic
CCCGTTTATTGGGCCATCCA+AGG 0.510594 1.4:-39683761 MS.gene37076:CDS
AATAACCCAATTCAAACCTT+GGG 0.510943 1.4:+39683286 None:intergenic
GGTTAGAATGCATCCTTGGA+TGG 0.514645 1.4:+39683748 None:intergenic
GTGTGCAATGACCCAAAGTC+CGG 0.524456 1.4:+39683727 None:intergenic
ATCTTCCTAGTGGGTTGTCA+AGG 0.527107 1.4:+39683507 None:intergenic
GCCAAATATGAGAGGTTATG+TGG 0.527111 1.4:+39683788 None:intergenic
AAGGGTATGAAAGTAATTTG+TGG 0.538654 1.4:+39683811 None:intergenic
CTCACCATAACACTCACTCT+TGG 0.540480 1.4:-39683476 MS.gene37076:CDS
GGGCCGACCTGAAACATTGA+AGG 0.545937 1.4:+39683436 None:intergenic
CTGAGTAAATGGGTCCATAT+GGG 0.547451 1.4:+39683387 None:intergenic
TTTCAGGTCGGCCCTACGAT+AGG 0.551564 1.4:-39683427 MS.gene37076:CDS
CCATAACACTCACTCTTGGT+TGG 0.553191 1.4:-39683472 MS.gene37076:CDS
GCTTCCATTGCATGATAATG+AGG 0.557178 1.4:+39683047 None:intergenic
TCATGCAATGGAAGCTACAA+AGG 0.560560 1.4:-39683039 MS.gene37076:CDS
GGTAAGGTCAACAATGACAT+AGG 0.560671 1.4:+39683859 None:intergenic
GAATGATGAACATTTGAAGA+GGG 0.563157 1.4:-39683972 MS.gene37076:CDS
GTAAGAAACTGCGAGAATCC+CGG 0.566019 1.4:+39683331 None:intergenic
AACCCATTGACAATAAGAAG+TGG 0.571839 1.4:+39683248 None:intergenic
CCAACCAAGAGTGAGTGTTA+TGG 0.573998 1.4:+39683472 None:intergenic
AATATGAGAGGTTATGTGGA+AGG 0.574811 1.4:+39683792 None:intergenic
GGTTGTGTGCAAATGGGAGC+AGG 0.577483 1.4:-39684034 None:intergenic
TAAGGAGTGTCTTTATGTTG+AGG 0.578516 1.4:-39682943 MS.gene37076:CDS
ACCGAATGGGATTGGATGAG+AGG 0.579320 1.4:-39683167 MS.gene37076:CDS
CAAGGATTGATGCTATGGTA+AGG 0.584896 1.4:+39683843 None:intergenic
CGTCGCCACCACTCTAACAC+AGG 0.590961 1.4:-39683596 MS.gene37076:CDS
AATTTGTGGCTATGTAGGCA+AGG 0.591021 1.4:+39683825 None:intergenic
ATTGATAATTACTAAATGCA+TGG 0.593230 1.4:+39683693 None:intergenic
AGAATGATGAACATTTGAAG+AGG 0.594391 1.4:-39683973 MS.gene37076:CDS
ACATTGAAGGCTAAGTAAAG+TGG 0.595170 1.4:+39683449 None:intergenic
CAAGAGAACCTGTGTTAGAG+TGG 0.596352 1.4:+39683588 None:intergenic
TGGGTCATTGCACACGAATG+CGG 0.599338 1.4:-39683719 MS.gene37076:CDS
CTCCTATTTACAAAGCTATG+TGG 0.601766 1.4:-39682974 MS.gene37076:CDS
AAATACCTTGACAACCCACT+AGG 0.604712 1.4:-39683512 MS.gene37076:CDS
TAGCCTTCAATGTTTCAGGT+CGG 0.609244 1.4:-39683439 MS.gene37076:CDS
TATGCCTCATTATCATGCAA+TGG 0.610036 1.4:-39683051 MS.gene37076:CDS
TCCATATGGGTCGTAATGTG+AGG 0.611830 1.4:+39683400 None:intergenic
ATATGAGAGGTTATGTGGAA+GGG 0.613172 1.4:+39683793 None:intergenic
GTGTAAGAAATCTTCCTAGT+GGG 0.619593 1.4:+39683498 None:intergenic
AGGTTCTCTTGAACGTGACG+AGG 0.626874 1.4:-39683576 MS.gene37076:CDS
CATTCGGTAGAATCATAATG+AGG 0.627483 1.4:+39683182 None:intergenic
ACTTCTCCAAGAGTGAATGG+TGG 0.629325 1.4:+39683935 None:intergenic
GAGAGGTGCTTTGGCAACTG+TGG 0.636324 1.4:-39683150 MS.gene37076:CDS
GAGAACCTGTGTTAGAGTGG+TGG 0.637244 1.4:+39683591 None:intergenic
AGTGTAAGAAATCTTCCTAG+TGG 0.637501 1.4:+39683497 None:intergenic
ATGTGAGGCGAACCTATCGT+AGG 0.637515 1.4:+39683415 None:intergenic
TTACAAAGCTATGTGGAGAG+AGG 0.639770 1.4:-39682967 MS.gene37076:CDS
AGATTATGGAATTCTTAACA+AGG 0.642924 1.4:-39683123 MS.gene37076:CDS
AACCTTGGGCCAAAACAAGA+CGG 0.646867 1.4:+39683300 None:intergenic
AAAATGATCGAATTAAGGAA+CGG 0.647354 1.4:+39683882 None:intergenic
TGTGAGGCGAACCTATCGTA+GGG 0.648455 1.4:+39683416 None:intergenic
GAACGGTTAAAACAATGTGG+TGG 0.652401 1.4:+39683899 None:intergenic
CCTCTAATCCTCCATCACAA+AGG 0.653348 1.4:-39684003 MS.gene37076:CDS
AGAGGCATGAATGAAGAACA+AGG 0.653383 1.4:+39683651 None:intergenic
TTTATGTTGAGGCTGATGAA+GGG 0.653528 1.4:-39682932 MS.gene37076:CDS
TAACATAACTGATACTCATG+TGG 0.653989 1.4:-39683093 MS.gene37076:CDS
ATAACCTCTCATATTTGGCG+TGG 0.658374 1.4:-39683784 MS.gene37076:CDS
AATCATAATGAGGCAAAGCA+GGG 0.659916 1.4:+39683192 None:intergenic
CGGGCCACGCCAAATATGAG+AGG 0.665310 1.4:+39683780 None:intergenic
GATAATTACTAAATGCATGG+TGG 0.685300 1.4:+39683696 None:intergenic
AAGGAACGGTTAAAACAATG+TGG 0.703232 1.4:+39683896 None:intergenic
TGTGTGCAAATGGGAGCAGG+TGG 0.715963 1.4:-39684031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCATTTAGTAATTATCAA+TGG - chr1.4:39683221-39683240 MS.gene37076:CDS 20.0%
!! TGCATTTAGTAATTATCAAT+GGG - chr1.4:39683222-39683241 MS.gene37076:CDS 20.0%
!!! ATTGATAATTACTAAATGCA+TGG + chr1.4:39683222-39683241 None:intergenic 20.0%
!!! GTGAATATTATCATTTTGAT+GGG - chr1.4:39683914-39683933 MS.gene37076:CDS 20.0%
! AAAATGATCGAATTAAGGAA+CGG + chr1.4:39683033-39683052 None:intergenic 25.0%
! AATTGGGTTATTTGTGTTTA+TGG - chr1.4:39683637-39683656 MS.gene37076:CDS 25.0%
! AGAAAAAATCTCAAATTGGT+TGG - chr1.4:39683371-39683390 MS.gene37076:CDS 25.0%
! AGATTATGGAATTCTTAACA+AGG - chr1.4:39683789-39683808 MS.gene37076:CDS 25.0%
! ATAGGAAAATGATCGAATTA+AGG + chr1.4:39683038-39683057 None:intergenic 25.0%
! CCTAAGAAAAAATCTCAAAT+TGG - chr1.4:39683367-39683386 MS.gene37076:CDS 25.0%
! CTATATTTCCACGAAAAATA+AGG + chr1.4:39683292-39683311 None:intergenic 25.0%
! TGATAATATTCACCCAAAAT+TGG + chr1.4:39683907-39683926 None:intergenic 25.0%
!! GGTGAATATTATCATTTTGA+TGG - chr1.4:39683913-39683932 MS.gene37076:CDS 25.0%
!!! CCAATTTGAGATTTTTTCTT+AGG + chr1.4:39683370-39683389 None:intergenic 25.0%
AAATAACCCAATTCAAACCT+TGG + chr1.4:39683630-39683649 None:intergenic 30.0%
AAATTTATGTTTCAGATGCC+GGG - chr1.4:39683563-39683582 MS.gene37076:CDS 30.0%
AATAACCCAATTCAAACCTT+GGG + chr1.4:39683629-39683648 None:intergenic 30.0%
AGAATGATGAACATTTGAAG+AGG - chr1.4:39682939-39682958 MS.gene37076:CDS 30.0%
ATTCCACTTCTTATTGTCAA+TGG - chr1.4:39683661-39683680 MS.gene37076:CDS 30.0%
CAAATTTATGTTTCAGATGC+CGG - chr1.4:39683562-39683581 MS.gene37076:CDS 30.0%
GAATGATGAACATTTGAAGA+GGG - chr1.4:39682940-39682959 MS.gene37076:CDS 30.0%
GATAATTACTAAATGCATGG+TGG + chr1.4:39683219-39683238 None:intergenic 30.0%
TAACATAACTGATACTCATG+TGG - chr1.4:39683819-39683838 MS.gene37076:CDS 30.0%
TCATTATGATTCTACCGAAT+GGG - chr1.4:39683732-39683751 MS.gene37076:CDS 30.0%
TTCCACTTCTTATTGTCAAT+GGG - chr1.4:39683662-39683681 MS.gene37076:CDS 30.0%
! AAAGTAATTTGTGGCTATGT+AGG + chr1.4:39683095-39683114 None:intergenic 30.0%
! AAGGGTATGAAAGTAATTTG+TGG + chr1.4:39683104-39683123 None:intergenic 30.0%
! TTCTCTATTTTCCTTTGTGA+TGG + chr1.4:39682923-39682942 None:intergenic 30.0%
!! GTGAGATTAAAGGTGTTTAT+TGG - chr1.4:39684004-39684023 MS.gene37076:CDS 30.0%
!! TCTTATTGTCAATGGGTTTT+TGG - chr1.4:39683669-39683688 MS.gene37076:CDS 30.0%
AACCCATTGACAATAAGAAG+TGG + chr1.4:39683667-39683686 None:intergenic 35.0%
AAGGAACGGTTAAAACAATG+TGG + chr1.4:39683019-39683038 None:intergenic 35.0%
AATATGAGAGGTTATGTGGA+AGG + chr1.4:39683123-39683142 None:intergenic 35.0%
AATCATAATGAGGCAAAGCA+GGG + chr1.4:39683723-39683742 None:intergenic 35.0%
ACATTGAAGGCTAAGTAAAG+TGG + chr1.4:39683466-39683485 None:intergenic 35.0%
AGTGTAAGAAATCTTCCTAG+TGG + chr1.4:39683418-39683437 None:intergenic 35.0%
ATATGAGAGGTTATGTGGAA+GGG + chr1.4:39683122-39683141 None:intergenic 35.0%
CATTCGGTAGAATCATAATG+AGG + chr1.4:39683733-39683752 None:intergenic 35.0%
CTCATTATGATTCTACCGAA+TGG - chr1.4:39683731-39683750 MS.gene37076:CDS 35.0%
CTCCTATTTACAAAGCTATG+TGG - chr1.4:39683938-39683957 MS.gene37076:CDS 35.0%
CTTTCACGATCTGAGTAAAT+GGG + chr1.4:39683538-39683557 None:intergenic 35.0%
GTGTAAGAAATCTTCCTAGT+GGG + chr1.4:39683417-39683436 None:intergenic 35.0%
TATGCCTCATTATCATGCAA+TGG - chr1.4:39683861-39683880 MS.gene37076:CDS 35.0%
TCCACATAACCTCTCATATT+TGG - chr1.4:39683123-39683142 MS.gene37076:CDS 35.0%
TCTTTCACGATCTGAGTAAA+TGG + chr1.4:39683539-39683558 None:intergenic 35.0%
TTTATGTTGAGGCTGATGAA+GGG - chr1.4:39683980-39683999 MS.gene37076:CDS 35.0%
! AAAGGCTGTGAAACCAATTT+TGG - chr1.4:39683891-39683910 MS.gene37076:CDS 35.0%
! AAGGCTGTGAAACCAATTTT+GGG - chr1.4:39683892-39683911 MS.gene37076:CDS 35.0%
! ACGAAAAATAAGGTACCAAG+AGG + chr1.4:39683282-39683301 None:intergenic 35.0%
! TACTTAGCCTTCAATGTTTC+AGG - chr1.4:39683469-39683488 MS.gene37076:CDS 35.0%
! TCTATTTTCCTTTGTGATGG+AGG + chr1.4:39682920-39682939 None:intergenic 35.0%
!! CTCCACATAGCTTTGTAAAT+AGG + chr1.4:39683943-39683962 None:intergenic 35.0%
!! TAAGGAGTGTCTTTATGTTG+AGG - chr1.4:39683969-39683988 MS.gene37076:CDS 35.0%
!!! TCTTGGTACCTTATTTTTCG+TGG - chr1.4:39683281-39683300 MS.gene37076:CDS 35.0%
AAATACCTTGACAACCCACT+AGG - chr1.4:39683400-39683419 MS.gene37076:CDS 40.0%
AATTTGTGGCTATGTAGGCA+AGG + chr1.4:39683090-39683109 None:intergenic 40.0%
ACAAAACCACCATTCACTCT+TGG - chr1.4:39682971-39682990 MS.gene37076:CDS 40.0%
ATAACCTCTCATATTTGGCG+TGG - chr1.4:39683128-39683147 MS.gene37076:CDS 40.0%
ATCCAAGGATGCATTCTAAC+CGG - chr1.4:39683166-39683185 MS.gene37076:CDS 40.0%
ATGATTCTACCGAATGGGAT+TGG - chr1.4:39683737-39683756 MS.gene37076:CDS 40.0%
ATGCATTCTAACCGGACTTT+GGG - chr1.4:39683174-39683193 MS.gene37076:CDS 40.0%
CAAGGATTGATGCTATGGTA+AGG + chr1.4:39683072-39683091 None:intergenic 40.0%
CAATGGGTCGATGATTTAGT+TGG - chr1.4:39683238-39683257 MS.gene37076:CDS 40.0%
CTGAGTAAATGGGTCCATAT+GGG + chr1.4:39683528-39683547 None:intergenic 40.0%
CTTTATGTTGAGGCTGATGA+AGG - chr1.4:39683979-39683998 MS.gene37076:CDS 40.0%
GAACGGTTAAAACAATGTGG+TGG + chr1.4:39683016-39683035 None:intergenic 40.0%
GAATCATAATGAGGCAAAGC+AGG + chr1.4:39683724-39683743 None:intergenic 40.0%
GATGAAGGGAGTGAGATTAA+AGG - chr1.4:39683994-39684013 MS.gene37076:CDS 40.0%
GCAACTGTGGATAGAGATTA+TGG - chr1.4:39683775-39683794 MS.gene37076:CDS 40.0%
GCCAAATATGAGAGGTTATG+TGG + chr1.4:39683127-39683146 None:intergenic 40.0%
GGTAAGGTCAACAATGACAT+AGG + chr1.4:39683056-39683075 None:intergenic 40.0%
TCATGCAATGGAAGCTACAA+AGG - chr1.4:39683873-39683892 MS.gene37076:CDS 40.0%
TCTGAGTAAATGGGTCCATA+TGG + chr1.4:39683529-39683548 None:intergenic 40.0%
TGTTCTTCATTCATGCCTCT+TGG - chr1.4:39683264-39683283 MS.gene37076:CDS 40.0%
TTACAAAGCTATGTGGAGAG+AGG - chr1.4:39683945-39683964 MS.gene37076:CDS 40.0%
TTGACTTCTCCAAGAGTGAA+TGG + chr1.4:39682983-39683002 None:intergenic 40.0%
TTTGGCCCAAGGTTTGAATT+GGG - chr1.4:39683621-39683640 MS.gene37076:CDS 40.0%
! AGAGGCATGAATGAAGAACA+AGG + chr1.4:39683264-39683283 None:intergenic 40.0%
! GCTTCCATTGCATGATAATG+AGG + chr1.4:39683868-39683887 None:intergenic 40.0%
! TAGCCTTCAATGTTTCAGGT+CGG - chr1.4:39683473-39683492 MS.gene37076:CDS 40.0%
! TTTTGGCCCAAGGTTTGAAT+TGG - chr1.4:39683620-39683639 MS.gene37076:CDS 40.0%
!!! GTGAATGGTGGTTTTGTAGT+TGG + chr1.4:39682968-39682987 None:intergenic 40.0%
AACCTTGGGCCAAAACAAGA+CGG + chr1.4:39683615-39683634 None:intergenic 45.0%
ACCTCTCATCCAATCCCATT+CGG + chr1.4:39683749-39683768 None:intergenic 45.0%
ACTTCTCCAAGAGTGAATGG+TGG + chr1.4:39682980-39682999 None:intergenic 45.0%
CAAGAGAACCTGTGTTAGAG+TGG + chr1.4:39683327-39683346 None:intergenic 45.0%
CCAACCAAGAGTGAGTGTTA+TGG + chr1.4:39683443-39683462 None:intergenic 45.0%
CCATAACACTCACTCTTGGT+TGG - chr1.4:39683440-39683459 MS.gene37076:CDS 45.0%
CCTCTAATCCTCCATCACAA+AGG - chr1.4:39682909-39682928 MS.gene37076:CDS 45.0%
CTCACCATAACACTCACTCT+TGG - chr1.4:39683436-39683455 MS.gene37076:CDS 45.0%
GATGCATTCTAACCGGACTT+TGG - chr1.4:39683173-39683192 MS.gene37076:CDS 45.0%
GGATTCTCGCAGTTTCTTAC+GGG - chr1.4:39683584-39683603 MS.gene37076:CDS 45.0%
GGGATTCTCGCAGTTTCTTA+CGG - chr1.4:39683583-39683602 MS.gene37076:CDS 45.0%
GGTTAGAATGCATCCTTGGA+TGG + chr1.4:39683167-39683186 None:intergenic 45.0%
GTAAGAAACTGCGAGAATCC+CGG + chr1.4:39683584-39683603 None:intergenic 45.0%
GTAGGCAAGGATTGATGCTA+TGG + chr1.4:39683077-39683096 None:intergenic 45.0%
TCCATATGGGTCGTAATGTG+AGG + chr1.4:39683515-39683534 None:intergenic 45.0%
TCCTTGGATGGCCCAATAAA+CGG + chr1.4:39683155-39683174 None:intergenic 45.0%
! CCTTTGTGATGGAGGATTAG+AGG + chr1.4:39682912-39682931 None:intergenic 45.0%
!! ATCTTCCTAGTGGGTTGTCA+AGG + chr1.4:39683408-39683427 None:intergenic 45.0%
ACCGAATGGGATTGGATGAG+AGG - chr1.4:39683745-39683764 MS.gene37076:CDS 50.0%
AGCTATGTGGAGAGAGGCTA+AGG - chr1.4:39683951-39683970 MS.gene37076:CDS 50.0%
AGGTTCTCTTGAACGTGACG+AGG - chr1.4:39683336-39683355 MS.gene37076:CDS 50.0%
ATGTGAGGCGAACCTATCGT+AGG + chr1.4:39683500-39683519 None:intergenic 50.0%
ATTTGGCGTGGCCCGTTTAT+TGG - chr1.4:39683140-39683159 MS.gene37076:CDS 50.0%
CCTTGGATGGCCCAATAAAC+GGG + chr1.4:39683154-39683173 None:intergenic 50.0%
GAGAACCTGTGTTAGAGTGG+TGG + chr1.4:39683324-39683343 None:intergenic 50.0%
GCCTCACATTACGACCCATA+TGG - chr1.4:39683511-39683530 MS.gene37076:CDS 50.0%
GTCCGGTTAGAATGCATCCT+TGG + chr1.4:39683171-39683190 None:intergenic 50.0%
GTGTGCAATGACCCAAAGTC+CGG + chr1.4:39683188-39683207 None:intergenic 50.0%
TGGGTCATTGCACACGAATG+CGG - chr1.4:39683193-39683212 MS.gene37076:CDS 50.0%
TGTGAGGCGAACCTATCGTA+GGG + chr1.4:39683499-39683518 None:intergenic 50.0%
TTTGGCGTGGCCCGTTTATT+GGG - chr1.4:39683141-39683160 MS.gene37076:CDS 50.0%
!! GGATTGGATGAGAGGTGCTT+TGG - chr1.4:39683753-39683772 MS.gene37076:CDS 50.0%
!!! CGGGCTTTACCGTCTTGTTT+TGG - chr1.4:39683603-39683622 MS.gene37076:CDS 50.0%
!!! TACCGTCTTGTTTTGGCCCA+AGG - chr1.4:39683610-39683629 MS.gene37076:CDS 50.0%
CCCGTTTATTGGGCCATCCA+AGG - chr1.4:39683151-39683170 MS.gene37076:CDS 55.0%
GGGCCGACCTGAAACATTGA+AGG + chr1.4:39683479-39683498 None:intergenic 55.0%
! TTTCAGGTCGGCCCTACGAT+AGG - chr1.4:39683485-39683504 MS.gene37076:CDS 55.0%
!! GAGAGGTGCTTTGGCAACTG+TGG - chr1.4:39683762-39683781 MS.gene37076:CDS 55.0%
CGGGCCACGCCAAATATGAG+AGG + chr1.4:39683135-39683154 None:intergenic 60.0%
CGTCGCCACCACTCTAACAC+AGG - chr1.4:39683316-39683335 MS.gene37076:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 39682890 39684044 39682890 ID=MS.gene37076
chr1.4 mRNA 39682890 39684044 39682890 ID=MS.gene37076.t1;Parent=MS.gene37076
chr1.4 exon 39682890 39684044 39682890 ID=MS.gene37076.t1.exon1;Parent=MS.gene37076.t1
chr1.4 CDS 39682890 39684044 39682890 ID=cds.MS.gene37076.t1;Parent=MS.gene37076.t1
Gene Sequence

>MS.gene37076

ATGGGAGCAGGTGGTAGAGCCTCTAATCCTCCATCACAAAGGAAAATAGAGAATGATGAACATTTGAAGAGGGTTCCAACTACAAAACCACCATTCACTCTTGGAGAAGTCAAGAAAGCAATTCCACCACATTGTTTTAACCGTTCCTTAATTCGATCATTTTCCTATGTCATTGTTGACCTTACCATAGCATCAATCCTTGCCTACATAGCCACAAATTACTTTCATACCCTTCCACATAACCTCTCATATTTGGCGTGGCCCGTTTATTGGGCCATCCAAGGATGCATTCTAACCGGACTTTGGGTCATTGCACACGAATGCGGCCACCATGCATTTAGTAATTATCAATGGGTCGATGATTTAGTTGGCCTTGTTCTTCATTCATGCCTCTTGGTACCTTATTTTTCGTGGAAATATAGTCATCGTCGCCACCACTCTAACACAGGTTCTCTTGAACGTGACGAGGTTTTTGTTCCTAAGAAAAAATCTCAAATTGGTTGGTATTTTAAATACCTTGACAACCCACTAGGAAGATTTCTTACACTCACCATAACACTCACTCTTGGTTGGCCACTTTACTTAGCCTTCAATGTTTCAGGTCGGCCCTACGATAGGTTCGCCTCACATTACGACCCATATGGACCCATTTACTCAGATCGTGAAAGACTTCAAATTTATGTTTCAGATGCCGGGATTCTCGCAGTTTCTTACGGGCTTTACCGTCTTGTTTTGGCCCAAGGTTTGAATTGGGTTATTTGTGTTTATGGAATTCCACTTCTTATTGTCAATGGGTTTTTGGTTTTGATTACTTACTTGCAACACACTCACCCTGCTTTGCCTCATTATGATTCTACCGAATGGGATTGGATGAGAGGTGCTTTGGCAACTGTGGATAGAGATTATGGAATTCTTAACAAGGTTTTTCATAACATAACTGATACTCATGTGGTTCATCATATGTTTTCAACTATGCCTCATTATCATGCAATGGAAGCTACAAAGGCTGTGAAACCAATTTTGGGTGAATATTATCATTTTGATGGGACTCCTATTTACAAAGCTATGTGGAGAGAGGCTAAGGAGTGTCTTTATGTTGAGGCTGATGAAGGGAGTGAGATTAAAGGTGTTTATTGGTACAAAAATAAGCTTTAA
Protein sequence

>MS.gene37076.t1

MGAGGRASNPPSQRKIENDEHLKRVPTTKPPFTLGEVKKAIPPHCFNRSLIRSFSYVIVDLTIASILAYIATNYFHTLPHNLSYLAWPVYWAIQGCILTGLWVIAHECGHHAFSNYQWVDDLVGLVLHSCLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSQIGWYFKYLDNPLGRFLTLTITLTLGWPLYLAFNVSGRPYDRFASHYDPYGPIYSDRERLQIYVSDAGILAVSYGLYRLVLAQGLNWVICVYGIPLLIVNGFLVLITYLQHTHPALPHYDSTEWDWMRGALATVDRDYGILNKVFHNITDTHVVHHMFSTMPHYHAMEATKAVKPILGEYYHFDGTPIYKAMWREAKECLYVEADEGSEIKGVYWYKNKL