AlfalfaGEDB | MS.gene37396

M. sativa cultivar XinJiangDaYe / MS.gene37396

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37396.t1	XP_024629570.1	93.8	81	5	0	5	85	14	94	2.70E-19	104.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37396.t1	A0A072TLP7	91.6	83	7	0	3	85	11	93	3.3e-19	103.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050438	MS.gene37396	0.809442	1.89E-50	-1.69E-46
MS.gene050815	MS.gene37396	0.818372	2.03E-52	-1.69E-46
MS.gene053008	MS.gene37396	0.814032	1.89E-51	-1.69E-46
MS.gene058906	MS.gene37396	0.812337	4.46E-51	-1.69E-46
MS.gene059151	MS.gene37396	0.810229	1.28E-50	-1.69E-46
MS.gene060572	MS.gene37396	0.829267	5.66E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37396.t1	MTR_8g017610	97.561	82	2	0	4	85	15	96	3.09e-51	155
MS.gene37396.t1	MTR_8g017610	97.561	82	2	0	4	85	12	93	3.40e-51	155
MS.gene37396.t1	MTR_2g039890	41.406	128	18	3	5	75	52	179	3.77e-17	72.0
MS.gene37396.t1	MTR_2g039890	51.899	79	37	1	4	81	5	83	2.32e-16	69.7
MS.gene37396.t1	MTR_2g039890	41.406	128	18	3	5	75	99	226	4.65e-17	72.4
MS.gene37396.t1	MTR_2g039890	56.522	69	29	1	4	71	52	120	2.84e-16	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37396.t1	AT1G72690	57.895	76	30	1	4	77	10	85	1.49e-25	90.9
MS.gene37396.t1	AT5G57000	54.795	73	29	1	7	75	23	95	2.74e-18	73.9
MS.gene37396.t1	AT5G57000	54.795	73	29	1	7	75	70	142	6.97e-18	73.9
MS.gene37396.t1	AT1G17490	50.725	69	27	1	10	78	15	76	3.92e-17	69.3

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Find 25 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCTTGAGAGGGCTA+AGG	0.562461	8.4:+74322666	MS.gene37396:CDS
AACAGCTATGATCACTTTGA+TGG	0.413880	8.4:-74322886	None:intergenic
AAGCTCCAAACATTCTTGAG+AGG	0.602370	8.4:+74322659	MS.gene37396:CDS
AAGCTCCCGGTGTGTTTGAA+AGG	0.468558	8.4:+74322794	MS.gene37396:CDS
AAGGAATGATGACATTGATG+AGG	0.657096	8.4:+74322750	MS.gene37396:CDS
AGAGCTTGAAGCTGTAGTTG+AGG	0.634155	8.4:+74322825	MS.gene37396:CDS
AGATACTTTCTTGGGGAGAA+TGG	0.422648	8.4:-74322848	None:intergenic
AGCTCCAAACATTCTTGAGA+GGG	0.578483	8.4:+74322660	MS.gene37396:CDS
AGCTCCCGGTGTGTTTGAAA+GGG	0.525240	8.4:+74322795	MS.gene37396:CDS
AGGAATGATGACATTGATGA+GGG	0.670735	8.4:+74322751	MS.gene37396:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGTGTCAGATACTTTCTT+GGG	-	chr8.4:74322859-74322878	None:intergenic	30.0%
AAGGAATGATGACATTGATG+AGG	+	chr8.4:74322750-74322769	MS.gene37396:CDS	35.0%
AGGAATGATGACATTGATGA+GGG	+	chr8.4:74322751-74322770	MS.gene37396:CDS	35.0%
ATGACAAAGAAACTCATGGA+AGG	+	chr8.4:74322731-74322750	MS.gene37396:CDS	35.0%
CTTAGTGTCAGATACTTTCT+TGG	-	chr8.4:74322860-74322879	None:intergenic	35.0%
TAGTGTCAGATACTTTCTTG+GGG	-	chr8.4:74322858-74322877	None:intergenic	35.0%
TTCCATGAGTTTCTTTGTCA+TGG	-	chr8.4:74322732-74322751	None:intergenic	35.0%
AAACATTCTTGAGAGGGCTA+AGG	+	chr8.4:74322666-74322685	MS.gene37396:CDS	40.0%
AAGCTCCAAACATTCTTGAG+AGG	+	chr8.4:74322659-74322678	MS.gene37396:CDS	40.0%
AGATACTTTCTTGGGGAGAA+TGG	-	chr8.4:74322851-74322870	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	74322497	74322897	74322497	ID=MS.gene37396
chr8.4	mRNA	74322497	74322897	74322497	ID=MS.gene37396.t1;Parent=MS.gene37396
chr8.4	exon	74322497	74322503	74322497	ID=MS.gene37396.t1.exon1;Parent=MS.gene37396.t1
chr8.4	CDS	74322497	74322503	74322497	ID=cds.MS.gene37396.t1;Parent=MS.gene37396.t1
chr8.4	exon	74322647	74322897	74322647	ID=MS.gene37396.t1.exon2;Parent=MS.gene37396.t1
chr8.4	CDS	74322647	74322897	74322647	ID=cds.MS.gene37396.t1;Parent=MS.gene37396.t1

Gene Sequence

>MS.gene37396

ATGATAAGTAATTATTGGTTTTAGGTATATGTGGGAACTAGTTATTGTACATTCTAAACATAAATGATATGACAAATAACTATTTTATAAATGATTTGGTTCAAACTTTAAACTCTAAACCCCTTTTGTATATTCTGTTTCATTTGAAAGAAAAAGATGTGAAAGCTCCAAACATTCTTGAGAGGGCTAAGGAGGAGACTGAGGCAGTTTTTCATCATGACAAATCGCCTCGCCATGACAAAGAAACTCATGGAAGGAATGATGACATTGATGAGGGAACTTCTGTTGAAGAAGTCAAAGCTCCCGGTGTGTTTGAAAGGGTGAAGGAAGAGCTTGAAGCTGTAGTTGAGGCCATTCTCCCCAAGAAAGTATCTGACACTAAGGACTCTCCATCAAAGTGA

Protein sequence

>MS.gene37396.t1

MIKKDVKAPNILERAKEETEAVFHHDKSPRHDKETHGRNDDIDEGTSVEEVKAPGVFERVKEELEAVVEAILPKKVSDTKDSPSK