Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38604.t1 | XP_003602807.1 | 98.6 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 6.10E-209 | 736.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38604.t1 | G7J3W3 | 98.6 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 4.4e-209 | 736.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050767 | MS.gene38604 | -0.812173 | 4.84E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene38604 | -0.807163 | 5.78E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene38604 | -0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene38604 | -0.807819 | 4.20E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene38604 | -0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene38604 | -0.809885 | 1.52E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene38604 | -0.838251 | 3.21E-57 | -1.69E-46 |
| MS.gene055497 | MS.gene38604 | 0.992565 | 4.61E-194 | -1.69E-46 |
| MS.gene057246 | MS.gene38604 | -0.808757 | 2.65E-50 | -1.69E-46 |
| MS.gene058903 | MS.gene38604 | -0.803333 | 3.66E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene38604 | -0.803639 | 3.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38604.t1 | MTR_3g099200 | 98.645 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 0.0 | 761 |
| MS.gene38604.t1 | MTR_3g099200 | 99.379 | 322 | 2 | 0 | 48 | 369 | 1 | 322 | 0.0 | 669 |
| MS.gene38604.t1 | MTR_4g102890 | 72.460 | 374 | 73 | 7 | 1 | 365 | 1 | 353 | 0.0 | 533 |
| MS.gene38604.t1 | MTR_4g102890 | 76.087 | 322 | 54 | 5 | 50 | 365 | 1 | 305 | 5.77e-177 | 494 |
| MS.gene38604.t1 | MTR_4g104060 | 71.067 | 356 | 78 | 6 | 13 | 360 | 6 | 344 | 9.40e-176 | 493 |
| MS.gene38604.t1 | MTR_4g104060 | 71.470 | 347 | 74 | 6 | 22 | 360 | 1 | 330 | 1.75e-172 | 484 |
| MS.gene38604.t1 | MTR_4g102890 | 76.307 | 287 | 45 | 5 | 85 | 365 | 1 | 270 | 1.04e-155 | 439 |
| MS.gene38604.t1 | MTR_8g079020 | 30.198 | 202 | 124 | 5 | 166 | 355 | 181 | 377 | 3.19e-18 | 87.0 |
| MS.gene38604.t1 | MTR_8g079040 | 29.703 | 202 | 125 | 5 | 166 | 355 | 181 | 377 | 4.38e-18 | 86.3 |
| MS.gene38604.t1 | MTR_1g101790 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 6.73e-17 | 82.4 |
| MS.gene38604.t1 | MTR_1g101790 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 9.04e-17 | 82.4 |
| MS.gene38604.t1 | MTR_6g089580 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 2.74e-14 | 74.7 |
| MS.gene38604.t1 | MTR_6g464840 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 3.70e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38604.t1 | AT2G23520 | 29.208 | 202 | 126 | 5 | 166 | 355 | 182 | 378 | 3.43e-18 | 86.7 |
| MS.gene38604.t1 | AT5G66950 | 32.597 | 181 | 105 | 6 | 187 | 355 | 201 | 376 | 4.84e-18 | 86.3 |
| MS.gene38604.t1 | AT4G37100 | 28.713 | 202 | 127 | 6 | 166 | 355 | 186 | 382 | 4.66e-17 | 83.2 |
| MS.gene38604.t1 | AT5G51920 | 27.615 | 239 | 140 | 10 | 137 | 357 | 128 | 351 | 1.43e-16 | 81.6 |
| MS.gene38604.t1 | AT4G22980 | 28.512 | 242 | 146 | 8 | 138 | 357 | 94 | 330 | 8.53e-16 | 79.3 |
Find 83 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAACCTTGAATATTC+TGG | 0.214881 | 3.1:-79263510 | None:intergenic |
| TGGTTGGACTTGAGGATTAA+AGG | 0.225306 | 3.1:+79263984 | MS.gene38604:CDS |
| AGAAAGTTACCCTTTCATTA+AGG | 0.229969 | 3.1:+79263866 | MS.gene38604:CDS |
| ATCAAACAGCATGGTCTTAA+AGG | 0.234277 | 3.1:+79263251 | MS.gene38604:CDS |
| AGGATTCCTTTCTGACTAAA+AGG | 0.251516 | 3.1:-79264271 | None:intergenic |
| AGGATTGGAATTAGTGTTAC+TGG | 0.261905 | 3.1:-79264234 | None:intergenic |
| TCAACATATTCCATTTCTTT+TGG | 0.272659 | 3.1:-79263465 | None:intergenic |
| AACAAGAAATCCTCATTTAC+TGG | 0.292904 | 3.1:+79263720 | MS.gene38604:CDS |
| CTCAGTTAAGTCAAAACTTT+AGG | 0.307220 | 3.1:+79264009 | MS.gene38604:CDS |
| ATCTTGGCCCTGTCAAATTC+AGG | 0.316783 | 3.1:-79263663 | None:intergenic |
| GAAAGTTACCCTTTCATTAA+GGG | 0.324695 | 3.1:+79263867 | MS.gene38604:CDS |
| GGAAATTCAAGCTCAAAATA+AGG | 0.334997 | 3.1:+79263761 | MS.gene38604:CDS |
| AGGTTCTTCATTGATGATAA+AGG | 0.352472 | 3.1:-79263562 | None:intergenic |
| CTCAAGTCCAACCAAGTCTT+TGG | 0.354864 | 3.1:-79263975 | None:intergenic |
| TGAAGAACCTTTAGATGAAA+AGG | 0.360026 | 3.1:+79263575 | MS.gene38604:CDS |
| TGATTGCTCCAATTGAATCT+TGG | 0.367304 | 3.1:-79263679 | None:intergenic |
| GGATAAGAGAATAAGCCTTT+TGG | 0.370572 | 3.1:-79264050 | None:intergenic |
| TTGATTGAAGGAGATGGAAA+TGG | 0.386242 | 3.1:+79263525 | MS.gene38604:CDS |
| GGTTGGACTTGAGGATTAAA+GGG | 0.390781 | 3.1:+79263985 | MS.gene38604:CDS |
| TCCAATCACACCAAAAGAAA+TGG | 0.396737 | 3.1:+79263455 | MS.gene38604:CDS |
| AGACTACAGATCACAAAATC+AGG | 0.400820 | 3.1:-79264194 | None:intergenic |
| TGACAGGGCCAAGATTCAAT+TGG | 0.416450 | 3.1:+79263671 | MS.gene38604:CDS |
| GCAAGTGATTCTTGAAGGAT+TGG | 0.425657 | 3.1:-79264249 | None:intergenic |
| ATCTTCTTCTTGATCAAGAA+TGG | 0.426120 | 3.1:-79263904 | None:intergenic |
| CAGAAGCTCACAGGAACAAT+TGG | 0.426312 | 3.1:+79264105 | MS.gene38604:CDS |
| GATTCTTCTTCATATACATT+TGG | 0.428676 | 3.1:+79263630 | MS.gene38604:CDS |
| GATGCCTCTGCTTATGTAGT+TGG | 0.445059 | 3.1:+79264140 | MS.gene38604:CDS |
| CTTCTGAAATTTCATGCTCC+TGG | 0.446468 | 3.1:-79263016 | None:intergenic |
| CAAAGTATCCAGAATATTCA+AGG | 0.446957 | 3.1:+79263502 | MS.gene38604:CDS |
| CACATCAGCTGCTTCATCTC+AGG | 0.449866 | 3.1:+79264298 | MS.gene38604:CDS |
| TGATTGAAGGAGATGGAAAT+GGG | 0.449991 | 3.1:+79263526 | MS.gene38604:CDS |
| AAAAGGCAAGTGATTCTTGA+AGG | 0.453246 | 3.1:-79264254 | None:intergenic |
| CAAAGACTTGGTTGGACTTG+AGG | 0.454098 | 3.1:+79263976 | MS.gene38604:CDS |
| TCCAACCAAGTCTTTGGTGC+AGG | 0.454333 | 3.1:-79263969 | None:intergenic |
| TACCTTGTTCTCTTCACTCC+AGG | 0.458116 | 3.1:+79263816 | MS.gene38604:CDS |
| AGATTCAATTGGAGCAATCA+AGG | 0.463937 | 3.1:+79263682 | MS.gene38604:CDS |
| TCCGCGAATTCGATATTAGA+TGG | 0.471848 | 3.1:+79263427 | MS.gene38604:CDS |
| ATCATAGCATCCTTGTAGCC+TGG | 0.481377 | 3.1:-79263834 | None:intergenic |
| TCTCTTCACTCCAGGCTACA+AGG | 0.485295 | 3.1:+79263824 | MS.gene38604:CDS |
| ACCATCTAATATCGAATTCG+CGG | 0.487526 | 3.1:-79263428 | None:intergenic |
| GAAGAACCTTTAGATGAAAA+GGG | 0.490344 | 3.1:+79263576 | MS.gene38604:CDS |
| GTAGTCTACCTGAATTTGAC+AGG | 0.495003 | 3.1:+79263655 | MS.gene38604:CDS |
| AGTAGTTTCCCTTAATGAAA+GGG | 0.500410 | 3.1:-79263875 | None:intergenic |
| CCCTGCACCAAAGACTTGGT+TGG | 0.503875 | 3.1:+79263968 | MS.gene38604:CDS |
| TTATCCCTGCACCAAAGACT+TGG | 0.509762 | 3.1:+79263964 | MS.gene38604:CDS |
| TGGAAGTTTCATATCGATCC+CGG | 0.516056 | 3.1:+79263740 | MS.gene38604:CDS |
| CTTATGTTAGGTAACATATC+CGG | 0.517913 | 3.1:+79263158 | MS.gene38604:intron |
| GAATTCGATATTAGATGGTC+AGG | 0.521252 | 3.1:+79263432 | MS.gene38604:CDS |
| TAGTAGTTTCCCTTAATGAA+AGG | 0.521318 | 3.1:-79263876 | None:intergenic |
| GAATATTCAAGGTTGATTGA+AGG | 0.523778 | 3.1:+79263513 | MS.gene38604:CDS |
| TCAAGGTTGATTGAAGGAGA+TGG | 0.526868 | 3.1:+79263519 | MS.gene38604:CDS |
| TAAGTCAAAACTTTAGGAGG+AGG | 0.533314 | 3.1:+79264015 | MS.gene38604:CDS |
| GCTTCAGCTATGATGTGAGC+TGG | 0.534188 | 3.1:-79263393 | None:intergenic |
| TATGAAACTTCCAGTAAATG+AGG | 0.537711 | 3.1:-79263730 | None:intergenic |
| GAAGTCAAGGACATTAAGAA+AGG | 0.539164 | 3.1:+79263195 | MS.gene38604:CDS |
| AGGTGTAAGATCAGTCCAAA+AGG | 0.543212 | 3.1:+79264035 | MS.gene38604:CDS |
| GAAGAAGAATCTCTAGGACT+AGG | 0.547253 | 3.1:-79263618 | None:intergenic |
| ATGCTAGTGGAACAATGCAT+TGG | 0.548958 | 3.1:+79264078 | MS.gene38604:CDS |
| CTACAAGGATGCTATGATGT+TGG | 0.551390 | 3.1:+79263839 | MS.gene38604:CDS |
| GAGCATGAAATTTCAGAAGC+AGG | 0.554400 | 3.1:+79263020 | MS.gene38604:CDS |
| AGTTAAGTCAAAACTTTAGG+AGG | 0.555539 | 3.1:+79264012 | MS.gene38604:CDS |
| CTAGGACTAGGAGTCCCTCT+TGG | 0.556097 | 3.1:-79263606 | None:intergenic |
| ATTGTTCCACTAGCATCTGC+TGG | 0.557819 | 3.1:-79264071 | None:intergenic |
| CTCTGCTTATGTAGTTGGAA+AGG | 0.565206 | 3.1:+79264145 | MS.gene38604:CDS |
| GTATATGAAGAAGAATCTCT+AGG | 0.565470 | 3.1:-79263624 | None:intergenic |
| TAGTATGGGAACAAATAGCC+AGG | 0.572151 | 3.1:+79262998 | None:intergenic |
| TGAAGCAGCTGATGTGTCAA+AGG | 0.574148 | 3.1:-79264291 | None:intergenic |
| AAGGATGCTATGATGTTGGT+AGG | 0.578373 | 3.1:+79263843 | MS.gene38604:CDS |
| ATTGGATCTCAGAAGCTCAC+AGG | 0.582954 | 3.1:+79264096 | MS.gene38604:CDS |
| TCTTATCCAGCAGATGCTAG+TGG | 0.585875 | 3.1:+79264065 | MS.gene38604:CDS |
| GAAAAGGGAAAGTCACCAAG+AGG | 0.596956 | 3.1:+79263591 | MS.gene38604:CDS |
| CCAACCAAGTCTTTGGTGCA+GGG | 0.603770 | 3.1:-79263968 | None:intergenic |
| GGTTGTAGAAAATGAAGTCA+AGG | 0.620310 | 3.1:+79263182 | MS.gene38604:CDS |
| AGCCTGGAGTGAAGAGAACA+AGG | 0.633075 | 3.1:-79263818 | None:intergenic |
| GACTACAGATCACAAAATCA+GGG | 0.633592 | 3.1:-79264193 | None:intergenic |
| ATGTTAGGTAACATATCCGG+AGG | 0.642612 | 3.1:+79263161 | MS.gene38604:intron |
| CTTATGTAGTTGGAAAGGAT+CGG | 0.648072 | 3.1:+79264150 | MS.gene38604:CDS |
| AATTTCAGAAGCAGGATCTG+AGG | 0.653221 | 3.1:+79263028 | MS.gene38604:CDS |
| CTTTCCAACTACATAAGCAG+AGG | 0.664110 | 3.1:-79264144 | None:intergenic |
| AAGTTGCAAATCAAACAGCA+TGG | 0.672925 | 3.1:+79263242 | MS.gene38604:CDS |
| AAAAGGGAAAGTCACCAAGA+GGG | 0.676816 | 3.1:+79263592 | MS.gene38604:CDS |
| TAGTCTACCTGAATTTGACA+GGG | 0.719966 | 3.1:+79263656 | MS.gene38604:CDS |
| TACAGATCACAAAATCAGGG+CGG | 0.767436 | 3.1:-79264190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAATCACACATA+AGG | - | chr3.1:79263094-79263113 | None:intergenic | 15.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | + | chr3.1:79263146-79263165 | MS.gene38604:intron | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | + | chr3.1:79263914-79263933 | MS.gene38604:CDS | 20.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | + | chr3.1:79263332-79263351 | MS.gene38604:intron | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | - | chr3.1:79263290-79263309 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | + | chr3.1:79263630-79263649 | MS.gene38604:CDS | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | + | chr3.1:79263357-79263376 | MS.gene38604:intron | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | - | chr3.1:79263468-79263487 | None:intergenic | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | + | chr3.1:79263932-79263951 | MS.gene38604:CDS | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | + | chr3.1:79263777-79263796 | MS.gene38604:CDS | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | + | chr3.1:79263287-79263306 | MS.gene38604:intron | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+CGG | - | chr3.1:79263762-79263781 | None:intergenic | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | - | chr3.1:79263332-79263351 | None:intergenic | 25.0% |
| AACAAGAAATCCTCATTTAC+TGG | + | chr3.1:79263720-79263739 | MS.gene38604:CDS | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | + | chr3.1:79263866-79263885 | MS.gene38604:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | - | chr3.1:79263878-79263897 | None:intergenic | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | + | chr3.1:79264012-79264031 | MS.gene38604:CDS | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | - | chr3.1:79263907-79263926 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | + | chr3.1:79264009-79264028 | MS.gene38604:CDS | 30.0% | |
| CTTATGTTAGGTAACATATC+CGG | + | chr3.1:79263158-79263177 | MS.gene38604:intron | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | + | chr3.1:79263867-79263886 | MS.gene38604:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | + | chr3.1:79263576-79263595 | MS.gene38604:CDS | 30.0% | |
| GGAAATTCAAGCTCAAAATA+AGG | + | chr3.1:79263761-79263780 | MS.gene38604:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | - | chr3.1:79263627-79263646 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | - | chr3.1:79263879-79263898 | None:intergenic | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | - | chr3.1:79263733-79263752 | None:intergenic | 30.0% | |
| TCAATCAACCTTGAATATTC+TGG | - | chr3.1:79263513-79263532 | None:intergenic | 30.0% | |
| TGAAGAACCTTTAGATGAAA+AGG | + | chr3.1:79263575-79263594 | MS.gene38604:CDS | 30.0% | |
| ! | AGGTTCTTCATTGATGATAA+AGG | - | chr3.1:79263565-79263584 | None:intergenic | 30.0% |
| ! | CAAAGTATCCAGAATATTCA+AGG | + | chr3.1:79263502-79263521 | MS.gene38604:CDS | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | - | chr3.1:79263118-79263137 | None:intergenic | 30.0% |
| ! | GAATATTCAAGGTTGATTGA+AGG | + | chr3.1:79263513-79263532 | MS.gene38604:CDS | 30.0% |
| !! | TATTTTGAGCTTGAATTTCC+GGG | - | chr3.1:79263761-79263780 | None:intergenic | 30.0% |
| AAAAGGCAAGTGATTCTTGA+AGG | - | chr3.1:79264257-79264276 | None:intergenic | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | + | chr3.1:79263242-79263261 | MS.gene38604:CDS | 35.0% | |
| ACCATCTAATATCGAATTCG+CGG | - | chr3.1:79263431-79263450 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | - | chr3.1:79264197-79264216 | None:intergenic | 35.0% | |
| AGATTCAATTGGAGCAATCA+AGG | + | chr3.1:79263682-79263701 | MS.gene38604:CDS | 35.0% | |
| AGGATTCCTTTCTGACTAAA+AGG | - | chr3.1:79264274-79264293 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | - | chr3.1:79264237-79264256 | None:intergenic | 35.0% | |
| CTTATGTAGTTGGAAAGGAT+CGG | + | chr3.1:79264150-79264169 | MS.gene38604:CDS | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | + | chr3.1:79263195-79263214 | MS.gene38604:CDS | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | + | chr3.1:79263432-79263451 | MS.gene38604:CDS | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | - | chr3.1:79264196-79264215 | None:intergenic | 35.0% | |
| GGTTGTAGAAAATGAAGTCA+AGG | + | chr3.1:79263182-79263201 | MS.gene38604:CDS | 35.0% | |
| TAGTCTACCTGAATTTGACA+GGG | + | chr3.1:79263656-79263675 | MS.gene38604:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | + | chr3.1:79263455-79263474 | MS.gene38604:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | + | chr3.1:79263526-79263545 | MS.gene38604:CDS | 35.0% | |
| TGATTGCTCCAATTGAATCT+TGG | - | chr3.1:79263682-79263701 | None:intergenic | 35.0% | |
| TTGATTGAAGGAGATGGAAA+TGG | + | chr3.1:79263525-79263544 | MS.gene38604:CDS | 35.0% | |
| ! | ACTTCATTTTCTACAACCTC+CGG | - | chr3.1:79263180-79263199 | None:intergenic | 35.0% |
| ! | ATCAAACAGCATGGTCTTAA+AGG | + | chr3.1:79263251-79263270 | MS.gene38604:CDS | 35.0% |
| ! | GACTTTCCCTTTTCATCTAA+AGG | - | chr3.1:79263585-79263604 | None:intergenic | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | - | chr3.1:79264053-79264072 | None:intergenic | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | + | chr3.1:79264015-79264034 | MS.gene38604:CDS | 35.0% |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | - | chr3.1:79263459-79263478 | None:intergenic | 35.0% |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | + | chr3.1:79263941-79263960 | MS.gene38604:CDS | 35.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | + | chr3.1:79263592-79263611 | MS.gene38604:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | + | chr3.1:79263843-79263862 | MS.gene38604:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | + | chr3.1:79263028-79263047 | MS.gene38604:CDS | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | + | chr3.1:79264035-79264054 | MS.gene38604:CDS | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | + | chr3.1:79264078-79264097 | MS.gene38604:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | + | chr3.1:79263161-79263180 | MS.gene38604:intron | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | + | chr3.1:79263839-79263858 | MS.gene38604:CDS | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | + | chr3.1:79264145-79264164 | MS.gene38604:CDS | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | - | chr3.1:79264147-79264166 | None:intergenic | 40.0% | |
| GAGCATGAAATTTCAGAAGC+AGG | + | chr3.1:79263020-79263039 | MS.gene38604:CDS | 40.0% | |
| GCAAGTGATTCTTGAAGGAT+TGG | - | chr3.1:79264252-79264271 | None:intergenic | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | + | chr3.1:79263985-79264004 | MS.gene38604:CDS | 40.0% | |
| GTAGTCTACCTGAATTTGAC+AGG | + | chr3.1:79263655-79263674 | MS.gene38604:CDS | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | - | chr3.1:79264193-79264212 | None:intergenic | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | + | chr3.1:79263427-79263446 | MS.gene38604:CDS | 40.0% | |
| TGGAAGTTTCATATCGATCC+CGG | + | chr3.1:79263740-79263759 | MS.gene38604:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | + | chr3.1:79263984-79264003 | MS.gene38604:CDS | 40.0% | |
| ! | CACTTGCCTTTTAGTCAGAA+AGG | + | chr3.1:79264265-79264284 | MS.gene38604:CDS | 40.0% |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | + | chr3.1:79263519-79263538 | MS.gene38604:CDS | 40.0% |
| !! | CTTCTGAAATTTCATGCTCC+TGG | - | chr3.1:79263019-79263038 | None:intergenic | 40.0% |
| !! | GAAGAAGAATCTCTAGGACT+AGG | - | chr3.1:79263621-79263640 | None:intergenic | 40.0% |
| ATCATAGCATCCTTGTAGCC+TGG | - | chr3.1:79263837-79263856 | None:intergenic | 45.0% | |
| ATCTTGGCCCTGTCAAATTC+AGG | - | chr3.1:79263666-79263685 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | + | chr3.1:79264096-79264115 | MS.gene38604:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | - | chr3.1:79264074-79264093 | None:intergenic | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | + | chr3.1:79264105-79264124 | MS.gene38604:CDS | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | - | chr3.1:79263978-79263997 | None:intergenic | 45.0% | |
| GAAAAGGGAAAGTCACCAAG+AGG | + | chr3.1:79263591-79263610 | MS.gene38604:CDS | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | + | chr3.1:79264140-79264159 | MS.gene38604:CDS | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | + | chr3.1:79263816-79263835 | MS.gene38604:CDS | 45.0% | |
| TCTTATCCAGCAGATGCTAG+TGG | + | chr3.1:79264065-79264084 | MS.gene38604:CDS | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | - | chr3.1:79264294-79264313 | None:intergenic | 45.0% | |
| TGACAGGGCCAAGATTCAAT+TGG | + | chr3.1:79263671-79263690 | MS.gene38604:CDS | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | + | chr3.1:79263964-79263983 | MS.gene38604:CDS | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | + | chr3.1:79263976-79263995 | MS.gene38604:CDS | 45.0% |
| AGCCTGGAGTGAAGAGAACA+AGG | - | chr3.1:79263821-79263840 | None:intergenic | 50.0% | |
| CACATCAGCTGCTTCATCTC+AGG | + | chr3.1:79264298-79264317 | MS.gene38604:CDS | 50.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | - | chr3.1:79263396-79263415 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | + | chr3.1:79263824-79263843 | MS.gene38604:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | - | chr3.1:79263971-79263990 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | - | chr3.1:79263972-79263991 | None:intergenic | 50.0% |
| CTAGGACTAGGAGTCCCTCT+TGG | - | chr3.1:79263609-79263628 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | + | chr3.1:79263968-79263987 | MS.gene38604:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79263002 | 79264331 | 79263002 | ID=MS.gene38604 |
| chr3.1 | mRNA | 79263002 | 79264331 | 79263002 | ID=MS.gene38604.t1;Parent=MS.gene38604 |
| chr3.1 | exon | 79263002 | 79263049 | 79263002 | ID=MS.gene38604.t1.exon1;Parent=MS.gene38604.t1 |
| chr3.1 | CDS | 79263002 | 79263049 | 79263002 | ID=cds.MS.gene38604.t1;Parent=MS.gene38604.t1 |
| chr3.1 | exon | 79263168 | 79263272 | 79263168 | ID=MS.gene38604.t1.exon2;Parent=MS.gene38604.t1 |
| chr3.1 | CDS | 79263168 | 79263272 | 79263168 | ID=cds.MS.gene38604.t1;Parent=MS.gene38604.t1 |
| chr3.1 | exon | 79263375 | 79264331 | 79263375 | ID=MS.gene38604.t1.exon3;Parent=MS.gene38604.t1 |
| chr3.1 | CDS | 79263375 | 79264331 | 79263375 | ID=cds.MS.gene38604.t1;Parent=MS.gene38604.t1 |
| Gene Sequence |
| Protein sequence |
