AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38735

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38735.t1 MTR_3g101370 79.524 420 19 4 1 353 1 420 0.0 648
MS.gene38735.t1 MTR_1g020080 73.414 331 76 6 32 353 98 425 1.26e-166 471
MS.gene38735.t1 MTR_3g101370 70.408 294 20 4 1 227 1 294 9.50e-134 383
MS.gene38735.t1 MTR_4g086600 57.843 306 105 4 25 306 110 415 3.97e-121 357
MS.gene38735.t1 MTR_4g131970 54.277 339 136 9 20 343 59 393 1.35e-111 331
MS.gene38735.t1 MTR_2g022950 55.738 305 129 3 52 350 86 390 6.48e-105 314
MS.gene38735.t1 MTR_2g097960 52.475 303 116 5 52 327 41 342 3.28e-100 303
MS.gene38735.t1 MTR_1g020080 71.859 199 50 2 39 232 105 302 1.16e-94 284
MS.gene38735.t1 MTR_1g020080 25.166 302 178 10 1 292 1 264 3.63e-18 84.3
MS.gene38735.t1 MTR_2g022950 62.420 157 58 1 52 207 86 242 6.27e-63 202
MS.gene38735.t1 MTR_2g022950 63.226 155 56 1 54 207 88 242 6.69e-62 199
MS.gene38735.t1 MTR_3g109090 31.461 267 153 6 52 298 70 326 8.71e-33 127
MS.gene38735.t1 MTR_3g109090 31.461 267 153 6 52 298 86 342 9.83e-33 127
MS.gene38735.t1 MTR_4g124940 30.435 276 155 8 46 298 66 327 1.85e-29 117
MS.gene38735.t1 MTR_4g124940 25.269 186 113 4 121 300 47 212 5.26e-11 63.9
MS.gene38735.t1 MTR_8g022050 31.873 251 143 9 69 298 101 344 1.64e-27 112
MS.gene38735.t1 MTR_4g085540 28.626 262 169 7 52 304 148 400 7.57e-25 106
MS.gene38735.t1 MTR_4g085540 31.429 175 98 4 121 290 35 192 1.18e-17 84.7
MS.gene38735.t1 MTR_4g085540 26.778 239 150 9 52 285 60 278 2.18e-17 84.0
MS.gene38735.t1 MTR_1g019150 27.413 259 177 7 52 304 146 399 6.90e-21 94.4
MS.gene38735.t1 MTR_1g019150 25.523 239 153 7 52 285 58 276 4.09e-16 80.1
MS.gene38735.t1 MTR_1g097440 27.306 271 171 10 46 311 50 299 3.64e-20 92.0
MS.gene38735.t1 MTR_1g097440 26.160 237 151 8 65 288 156 381 4.62e-15 76.6
MS.gene38735.t1 MTR_6g040190 28.731 268 159 10 46 307 45 286 1.47e-19 90.5
MS.gene38735.t1 MTR_6g040190 27.933 179 107 4 121 294 26 187 1.16e-13 72.4
MS.gene38735.t1 MTR_6g040190 22.097 267 189 8 52 309 139 395 2.24e-12 68.6
MS.gene38735.t1 MTR_7g102730 24.528 265 157 9 52 302 36 271 1.43e-18 87.4
MS.gene38735.t1 MTR_7g102730 27.197 239 158 6 52 282 124 354 3.34e-17 83.2
MS.gene38735.t1 MTR_7g102730 28.090 178 100 4 121 290 11 168 1.67e-14 75.1
MS.gene38735.t1 MTR_1g061870 24.219 256 169 7 52 302 41 276 9.46e-18 84.7
MS.gene38735.t1 MTR_1g061870 29.213 178 104 4 118 290 13 173 6.82e-15 75.9
MS.gene38735.t1 MTR_1g061870 25.207 242 157 8 52 283 129 356 3.54e-11 64.7
MS.gene38735.t1 MTR_3g102040 24.419 258 185 5 52 304 138 390 6.07e-17 82.4
MS.gene38735.t1 MTR_3g102040 31.429 175 98 4 121 290 25 182 1.33e-16 81.3
MS.gene38735.t1 MTR_3g102040 25.287 261 166 8 52 307 50 286 2.39e-15 77.8
MS.gene38735.t1 MTR_4g104470 26.943 193 120 4 119 303 121 300 1.62e-15 76.6
MS.gene38735.t1 MTR_4g104470 31.447 159 86 6 56 202 152 299 7.85e-14 71.6
MS.gene38735.t1 MTR_3g065190 28.090 178 116 4 49 226 48 213 1.95e-15 77.0
MS.gene38735.t1 MTR_6g040070 24.082 245 171 7 68 304 56 293 3.47e-15 77.4
MS.gene38735.t1 MTR_6g040070 31.492 181 103 6 121 296 16 180 2.23e-14 74.7
MS.gene38735.t1 MTR_3g075500 26.442 208 140 4 7 204 85 289 6.57e-15 74.7
MS.gene38735.t1 MTR_3g075500 25.405 185 124 3 119 297 108 284 3.83e-11 63.5
MS.gene38735.t1 MTR_7g107580 24.615 260 156 8 108 344 4 246 3.81e-14 73.2
MS.gene38735.t1 MTR_7g107580 24.615 260 156 8 108 344 4 246 7.63e-14 72.8
MS.gene38735.t1 MTR_1g080150 36.782 87 54 1 119 205 131 216 1.03e-13 70.5
MS.gene38735.t1 MTR_7g118120 21.839 261 174 6 48 302 126 362 1.29e-13 72.0
MS.gene38735.t1 MTR_1g064230 27.103 214 138 6 105 303 70 280 1.65e-13 70.5
MS.gene38735.t1 MTR_4g068120 23.810 189 116 3 108 296 15 175 5.02e-13 70.9
MS.gene38735.t1 MTR_7g107580 24.138 261 157 8 108 344 4 247 5.10e-13 70.1
MS.gene38735.t1 MTR_3g075500 26.596 188 125 4 7 184 85 269 1.56e-12 67.4
MS.gene38735.t1 MTR_3g079200 41.558 77 44 1 221 296 224 300 4.42e-12 67.4
MS.gene38735.t1 MTR_7g094660 25.121 207 138 5 115 312 636 834 5.06e-12 67.8
MS.gene38735.t1 MTR_1g045510 31.126 151 94 5 55 202 142 285 2.73e-11 63.9
MS.gene38735.t1 MTR_3g103420 27.374 179 112 5 122 285 12 187 2.76e-11 64.7
MS.gene38735.t1 MTR_7g106440 24.719 178 100 4 46 202 129 293 6.81e-11 63.2
MS.gene38735.t1 MTR_1g056520 27.907 172 113 4 49 212 131 299 8.21e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38735.t1 AT1G47500 71.569 306 81 4 52 353 131 434 4.36e-154 440
MS.gene38735.t1 AT1G47490 67.485 326 93 5 39 353 109 432 5.72e-153 437
MS.gene38735.t1 AT1G49600 63.851 296 92 5 52 338 145 434 2.22e-130 380
MS.gene38735.t1 AT3G19130 64.493 276 83 3 52 313 134 408 2.72e-127 372
MS.gene38735.t1 AT1G49600 66.038 265 80 2 52 307 145 408 2.02e-124 365
MS.gene38735.t1 AT1G49600 66.038 265 80 2 52 307 145 408 2.02e-124 365
MS.gene38735.t1 AT1G11650 57.394 284 109 6 52 331 88 363 1.26e-100 303
MS.gene38735.t1 AT5G54900 52.077 313 130 6 32 332 61 365 1.41e-97 295
MS.gene38735.t1 AT4G27000 57.028 249 106 1 54 302 108 355 8.51e-95 288
MS.gene38735.t1 AT5G19350 50.329 304 121 7 52 327 50 351 1.66e-90 278
MS.gene38735.t1 AT5G19350 49.351 308 122 7 52 327 50 355 8.31e-90 276
MS.gene38735.t1 AT1G11650 59.276 221 86 3 52 270 88 306 1.53e-83 256
MS.gene38735.t1 AT1G47490 62.500 200 66 2 39 229 109 308 1.76e-82 253
MS.gene38735.t1 AT1G47490 28.125 192 116 7 111 292 92 271 5.49e-13 69.3
MS.gene38735.t1 AT1G47500 68.156 179 55 1 52 228 131 309 1.14e-81 251
MS.gene38735.t1 AT1G47500 26.702 191 120 5 111 292 94 273 2.12e-11 64.7
MS.gene38735.t1 AT1G54080 35.206 267 143 11 52 298 89 345 2.32e-33 128
MS.gene38735.t1 AT1G54080 25.967 181 108 5 121 295 64 224 9.83e-12 66.2
MS.gene38735.t1 AT1G54080 34.686 271 143 12 52 298 89 349 8.59e-32 124
MS.gene38735.t1 AT1G54080 26.486 185 106 5 121 295 64 228 2.05e-11 65.1
MS.gene38735.t1 AT1G17370 32.331 266 149 10 52 298 80 333 1.03e-30 121
MS.gene38735.t1 AT1G17370 32.210 267 151 10 52 298 80 336 1.10e-30 121
MS.gene38735.t1 AT3G14100 32.584 267 150 9 52 298 85 341 2.77e-30 120
MS.gene38735.t1 AT3G14100 25.967 181 108 5 121 295 60 220 4.73e-12 67.0
MS.gene38735.t1 AT1G71770 25.566 309 214 9 52 351 172 473 6.06e-22 97.4
MS.gene38735.t1 AT1G71770 24.254 268 173 9 49 307 82 328 2.30e-18 87.0
MS.gene38735.t1 AT1G71770 25.566 309 214 9 52 351 172 473 6.06e-22 97.4
MS.gene38735.t1 AT1G71770 24.254 268 173 9 49 307 82 328 2.30e-18 87.0
MS.gene38735.t1 AT4G34110 27.586 261 173 7 52 304 150 402 8.61e-22 97.1
MS.gene38735.t1 AT4G34110 27.426 237 145 7 52 282 62 277 2.94e-20 92.4
MS.gene38735.t1 AT4G34110 33.143 175 95 4 121 290 37 194 1.92e-18 87.0
MS.gene38735.t1 AT2G23350 28.269 283 173 11 52 319 160 427 1.61e-20 93.2
MS.gene38735.t1 AT2G23350 29.714 175 101 3 121 290 47 204 5.28e-15 76.6
MS.gene38735.t1 AT2G23350 24.483 290 180 10 46 324 66 327 1.92e-14 75.1
MS.gene38735.t1 AT1G22760 25.483 259 179 7 52 302 162 414 3.19e-20 92.4
MS.gene38735.t1 AT1G22760 24.812 266 174 10 49 307 72 318 1.52e-17 84.3
MS.gene38735.t1 AT1G22760 30.337 178 101 5 118 290 47 206 2.19e-13 71.6
MS.gene38735.t1 AT1G49760 33.714 175 94 4 121 290 46 203 3.39e-19 89.4
MS.gene38735.t1 AT1G49760 24.809 262 179 6 52 304 159 411 4.51e-19 89.0
MS.gene38735.t1 AT1G49760 28.099 242 147 8 49 284 68 288 5.92e-16 79.7
MS.gene38735.t1 AT1G49760 33.714 175 94 4 121 290 46 203 3.39e-19 89.4
MS.gene38735.t1 AT1G49760 24.809 262 179 6 52 304 159 411 4.51e-19 89.0
MS.gene38735.t1 AT1G49760 28.099 242 147 8 49 284 68 288 5.92e-16 79.7
MS.gene38735.t1 AT1G34140 25.926 270 182 9 52 314 57 315 5.31e-18 85.1
MS.gene38735.t1 AT3G16380 27.306 271 179 8 46 307 132 393 1.51e-17 84.3
MS.gene38735.t1 AT3G16380 28.796 191 104 5 105 285 8 176 5.32e-12 67.4
MS.gene38735.t1 AT4G24770 28.723 188 123 4 21 200 139 323 3.19e-15 76.3
MS.gene38735.t1 AT4G24770 28.723 188 123 4 21 200 139 323 3.19e-15 76.3
MS.gene38735.t1 AT2G36660 23.438 256 175 7 65 309 150 395 1.20e-14 75.5
MS.gene38735.t1 AT2G36660 21.673 263 177 8 52 307 50 290 1.81e-14 75.1
MS.gene38735.t1 AT2G36660 27.429 175 105 4 121 290 25 182 1.95e-13 71.6
MS.gene38735.t1 AT4G14300 29.885 174 115 2 122 289 8 180 3.64e-14 73.6
MS.gene38735.t1 AT4G14300 29.885 174 115 2 122 289 8 180 3.64e-14 73.6
MS.gene38735.t1 AT3G04500 33.028 109 67 2 119 227 136 238 1.34e-13 70.1
MS.gene38735.t1 AT3G52380 26.776 183 116 4 30 201 124 299 1.61e-13 70.9
MS.gene38735.t1 AT2G37220 25.789 190 125 4 119 293 90 278 4.78e-13 69.3
MS.gene38735.t1 AT5G50250 30.061 163 109 3 40 200 127 286 5.61e-13 68.9
MS.gene38735.t1 AT5G50250 27.119 177 112 4 122 292 115 280 1.65e-12 67.8
MS.gene38735.t1 AT1G58470 27.273 253 146 9 122 343 8 253 7.54e-13 69.3
MS.gene38735.t1 AT1G58470 27.273 253 146 9 122 343 8 253 7.54e-13 69.3
MS.gene38735.t1 AT2G18510 25.843 178 120 4 49 226 48 213 8.63e-13 69.3
MS.gene38735.t1 AT3G13224 26.519 181 111 5 122 295 21 186 1.49e-12 67.0
MS.gene38735.t1 AT1G07360 38.272 81 49 1 217 296 220 300 3.56e-12 67.8
MS.gene38735.t1 AT4G00830 21.154 260 168 7 52 302 142 373 5.48e-12 67.0
MS.gene38735.t1 AT4G00830 21.154 260 168 7 52 302 142 373 5.48e-12 67.0
MS.gene38735.t1 AT4G00830 21.154 260 168 7 52 302 142 373 5.48e-12 67.0
MS.gene38735.t1 AT3G13224 25.424 177 111 4 122 292 12 173 5.75e-12 66.6
MS.gene38735.t1 AT3G13224 25.424 177 111 4 122 292 21 182 6.65e-12 66.2
MS.gene38735.t1 AT2G29580 38.272 81 49 1 217 296 220 300 7.30e-12 66.6
MS.gene38735.t1 AT1G60000 29.677 155 90 5 55 201 114 257 1.88e-11 63.9
MS.gene38735.t1 AT2G33410 26.437 174 121 2 122 289 8 180 2.95e-11 64.7

Find 98 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTGCGAATAACCTTAA+TGG 0.180225 3.3:+83995036 None:intergenic
TGGAACGGGCCAGCATATTA+TGG 0.217568 3.3:-83993210 MS.gene38735:CDS
AGCAAACAGTTCGTCTTTCT+TGG 0.248297 3.3:-83993692 MS.gene38735:CDS
GCAAACAGTTCGTCTTTCTT+GGG 0.324805 3.3:-83993691 MS.gene38735:CDS
ATAATATGCTGGCCCGTTCC+AGG 0.343614 3.3:+83993212 None:intergenic
GAAGCATTGCAGAAGCTAAA+TGG 0.357684 3.3:-83993729 MS.gene38735:CDS
ACAATTACCTGCTTATTTGC+CGG 0.361642 3.3:+83993660 None:intergenic
CAGAGACTATCTCACCATAC+TGG 0.369249 3.3:+83993924 None:intergenic
CTGTTGGTGTCCTCCATACA+TGG 0.369434 3.3:+83993113 None:intergenic
ACCGGACGTTCAAAGGGTTA+TGG 0.372671 3.3:-83994725 MS.gene38735:CDS
GGTTATGGTTTCGTCAGGTT+TGG 0.373844 3.3:-83994710 MS.gene38735:CDS
ACCCTTTGAACGTCCGGTAT+TGG 0.373855 3.3:+83994730 None:intergenic
GGCTGGGTGTGCCGTTTGAT+TGG 0.374274 3.3:+83994111 None:intergenic
GATGCATTATAGATATTTGT+TGG 0.384978 3.3:-83993995 MS.gene38735:intron
TCTTTCTTGGGGCCGCAATC+CGG 0.397217 3.3:-83993679 MS.gene38735:CDS
GGACCTGCTTATGATGGTTA+TGG 0.398241 3.3:-83993186 MS.gene38735:CDS
TGCTAAATGTCGCCCAGTTA+AGG 0.409625 3.3:+83994897 None:intergenic
CGAAAAGGTTGCTCTGTGTT+AGG 0.415515 3.3:+83994920 None:intergenic
GGAACGGGCCAGCATATTAT+GGG 0.418242 3.3:-83993209 MS.gene38735:CDS
CAAAGGGTTATGGTTTCGTC+AGG 0.421280 3.3:-83994715 MS.gene38735:CDS
AATTCGGCAGTCCCTGGAAC+GGG 0.437944 3.3:-83993224 MS.gene38735:CDS
TCATTTAGCTTACTTGCTGT+TGG 0.448711 3.3:+83993097 None:intergenic
AGACAACCATTCTCCCAGTA+TGG 0.449229 3.3:-83993938 MS.gene38735:CDS
GGAACCCACTGGTGCGGTGG+TGG 0.454001 3.3:+83996164 None:intergenic
TCTAGCAGGGCAATGCGAAT+TGG 0.457296 3.3:-83994635 MS.gene38735:CDS
GCATACATGCTCTGGTCATA+AGG 0.457460 3.3:+83993147 None:intergenic
ACCATAACCCTTTGAACGTC+CGG 0.459242 3.3:+83994724 None:intergenic
AGAATCAGCATCAGATTGGC+TGG 0.462991 3.3:+83994094 None:intergenic
AACAGAGGGGTATGGATTTG+TGG 0.467857 3.3:-83995002 MS.gene38735:CDS
TGCCAATACCGGACGTTCAA+AGG 0.470787 3.3:-83994732 MS.gene38735:CDS
GCTGCTGCTTACCCCATGTA+TGG 0.473026 3.3:-83993126 MS.gene38735:CDS
TAGCAGTTTAGATCTGAATT+CGG 0.474047 3.3:-83993240 MS.gene38735:intron
GTTAAGATACCTGTTGGAAA+AGG 0.477975 3.3:-83993902 MS.gene38735:CDS
GATCTGAATTCGGCAGTCCC+TGG 0.480859 3.3:-83993230 MS.gene38735:CDS
GCCAATACCGGACGTTCAAA+GGG 0.484393 3.3:-83994731 MS.gene38735:CDS
TTGTTATTACTCTGCTCCGT+TGG 0.489383 3.3:+83996239 None:intergenic
TTCGTCAGGTTTGGAGATGA+TGG 0.490103 3.3:-83994701 MS.gene38735:CDS
AGATCTTCAGCGGTAGCACT+AGG 0.494702 3.3:+83993962 None:intergenic
GTCTCTGTTAAGATACCTGT+TGG 0.495294 3.3:-83993908 MS.gene38735:CDS
CGGAGCAGAGTAATAACAAC+AGG 0.497406 3.3:-83996235 MS.gene38735:CDS
GCAATATCCACCGGCGGCAA+TGG 0.502503 3.3:-83996138 MS.gene38735:intron
ATCTCACCATACTGGGAGAA+TGG 0.509590 3.3:+83993932 None:intergenic
AAGCAGCAGCATACATGCTC+TGG 0.510563 3.3:+83993139 None:intergenic
TGATAGCCAGAGGATTTCCT+AGG 0.520577 3.3:+83994602 None:intergenic
AAGCTAAATGGTACAACAGT+TGG 0.520807 3.3:-83993717 MS.gene38735:CDS
CCTGCTTATTTGCCGGATTG+CGG 0.521827 3.3:+83993667 None:intergenic
CCGCAATCCGGCAAATAAGC+AGG 0.521834 3.3:-83993667 MS.gene38735:intron
TTGTAGAATCAGCATCAGAT+TGG 0.522042 3.3:+83994090 None:intergenic
GTCGCCCAGTTAAGGCGAAA+AGG 0.523550 3.3:+83994905 None:intergenic
ATACCTGTTGGAAAAGGATG+TGG 0.524194 3.3:-83993896 MS.gene38735:CDS
CAAACAGTTCGTCTTTCTTG+GGG 0.528594 3.3:-83993690 MS.gene38735:CDS
GAATTGGTGCTGCAACTCCT+AGG 0.534133 3.3:-83994619 MS.gene38735:CDS
ACTTGTCAAACAGAGGGGTA+TGG 0.546421 3.3:-83995010 MS.gene38735:CDS
CTTTAGCAGCTTTAACTGAA+GGG 0.546481 3.3:+83994765 None:intergenic
TAATATGCTGGCCCGTTCCA+GGG 0.552273 3.3:+83993213 None:intergenic
CAGCGGTAGCACTAGGGTCA+AGG 0.553945 3.3:+83993969 None:intergenic
ACTTTAGCAGCTTTAACTGA+AGG 0.557323 3.3:+83994764 None:intergenic
TATACAGGAGGCCAATCAAA+CGG 0.557602 3.3:-83994122 MS.gene38735:intron
TATCCATAACCATCATAAGC+AGG 0.565694 3.3:+83993183 None:intergenic
GCAACTCCTAGGAAATCCTC+TGG 0.574768 3.3:-83994608 MS.gene38735:CDS
TTTGTGGAATTCACTTCACA+TGG 0.575027 3.3:-83994986 MS.gene38735:CDS
AGAGACTATCTCACCATACT+GGG 0.577197 3.3:+83993925 None:intergenic
GTGAAGATGCAATCAACAAA+CGG 0.577977 3.3:-83996275 None:intergenic
GCATTATAGATATTTGTTGG+AGG 0.579075 3.3:-83993992 MS.gene38735:intron
GATATTGCATCGGAACCCAC+TGG 0.583710 3.3:+83996153 None:intergenic
CAGTTCCACCACCGCACCAG+TGG 0.589533 3.3:-83996169 MS.gene38735:CDS
GAATTCGGCAGTCCCTGGAA+CGG 0.589778 3.3:-83993225 MS.gene38735:CDS
AAGCAGACTTGTCAAACAGA+GGG 0.590205 3.3:-83995016 MS.gene38735:CDS
CATACCTTGTTGATAGCCAG+AGG 0.594509 3.3:+83994592 None:intergenic
GGCATTACCATTGCCGCCGG+TGG 0.595609 3.3:+83996131 None:intergenic
AACTGGGCGACATTTAGCAC+AGG 0.599909 3.3:-83994893 MS.gene38735:CDS
TGTTGGTGTCCTCCATACAT+GGG 0.602431 3.3:+83993114 None:intergenic
ATGCTCTGGTCATAAGGATG+CGG 0.606205 3.3:+83993153 None:intergenic
AAAGCTTTGAATGAAATGAA+TGG 0.607445 3.3:-83994668 MS.gene38735:CDS
TGCGGCATTACCATTGCCGC+CGG 0.608211 3.3:+83996128 None:intergenic
GCCGCCGGTGGATATTGCAT+CGG 0.610285 3.3:+83996143 None:intergenic
ATCGGAACCCACTGGTGCGG+TGG 0.611576 3.3:+83996161 None:intergenic
GGTTCCGATGCAATATCCAC+CGG 0.612883 3.3:-83996147 MS.gene38735:CDS
AGTGAATGCGGTGAAGGTGG+TGG 0.613969 3.3:+83996194 None:intergenic
GAATCAGCATCAGATTGGCT+GGG 0.616222 3.3:+83994095 None:intergenic
GATCTTCAGCGGTAGCACTA+GGG 0.619503 3.3:+83993963 None:intergenic
ACTGTAAGTGAATGCGGTGA+AGG 0.629575 3.3:+83996188 None:intergenic
GGTTTGGAGATGATGGTGAA+AGG 0.630977 3.3:-83994694 MS.gene38735:CDS
TGCATCGGAACCCACTGGTG+CGG 0.636482 3.3:+83996158 None:intergenic
AAATCCTCTGGCTATCAACA+AGG 0.639178 3.3:-83994596 MS.gene38735:intron
CGGTTCTGATTCGAAACCAA+CGG 0.648196 3.3:-83996255 MS.gene38735:CDS
GCTGCTTACCCCATGTATGG+AGG 0.652288 3.3:-83993123 MS.gene38735:CDS
GTAAGTGAATGCGGTGAAGG+TGG 0.663508 3.3:+83996191 None:intergenic
TTGTGGAATTCACTTCACAT+GGG 0.663803 3.3:-83994985 MS.gene38735:CDS
TCCGATGCAATATCCACCGG+CGG 0.667743 3.3:-83996144 MS.gene38735:CDS
AGTTCCACCACCGCACCAGT+GGG 0.669547 3.3:-83996168 MS.gene38735:CDS
GAACGGGCCAGCATATTATG+GGG 0.671150 3.3:-83993208 MS.gene38735:CDS
TAAGCAGACTTGTCAAACAG+AGG 0.678097 3.3:-83995017 MS.gene38735:CDS
TGGTTGTCTAAGATCTTCAG+CGG 0.682409 3.3:+83993952 None:intergenic
GTTGGTGTCCTCCATACATG+GGG 0.686565 3.3:+83993115 None:intergenic
AACGGGCCAGCATATTATGG+GGG 0.691722 3.3:-83993207 MS.gene38735:CDS
AGCAGACTTGTCAAACAGAG+GGG 0.704079 3.3:-83995015 MS.gene38735:CDS
GGTGGAACTGTAAGTGAATG+CGG 0.709974 3.3:+83996182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATTAAGTAAATTTTTT+GGG - chr3.3:83993649-83993668 MS.gene38735:intron 10.0%
!!! TTGTTATTAAGTAAATTTTT+TGG - chr3.3:83993648-83993667 MS.gene38735:intron 10.0%
!! AAATGTTGTGGTATTTATTT+AGG - chr3.3:83994202-83994221 MS.gene38735:intron 20.0%
!! ACAAAAAGAAAGAAAGAAAA+AGG + chr3.3:83993471-83993490 None:intergenic 20.0%
!! CAAAAAGAAAGAAAGAAAAA+GGG + chr3.3:83993470-83993489 None:intergenic 20.0%
!! TAAATACCACAACATTTATT+TGG + chr3.3:83994199-83994218 None:intergenic 20.0%
!! TAAATGCATAGAGTAAAAAT+TGG + chr3.3:83995534-83995553 None:intergenic 20.0%
!! TTTAATCCAAATAAATGTTG+TGG - chr3.3:83994190-83994209 MS.gene38735:intron 20.0%
!!! TAAATGTATGCTTTGTTTTA+TGG - chr3.3:83994978-83994997 MS.gene38735:CDS 20.0%
!!! TTTAGTTTGTTTCTTTATAC+AGG - chr3.3:83995233-83995252 MS.gene38735:intron 20.0%
!!! TTTATGTTTTCTGAAGTTTA+TGG - chr3.3:83993548-83993567 MS.gene38735:intron 20.0%
! AAAGAAAGAAAAAGGGAAAA+GGG + chr3.3:83993463-83993482 None:intergenic 25.0%
! AGCATATGCAAATGTTAAAA+TGG + chr3.3:83995158-83995177 None:intergenic 25.0%
! ATAAACAAGTGAATAGATTC+AGG + chr3.3:83995083-83995102 None:intergenic 25.0%
! ATAATCTCGATTGAATATCA+CGG + chr3.3:83994168-83994187 None:intergenic 25.0%
! CAAAAAACTATTAATGCACA+TGG + chr3.3:83993792-83993811 None:intergenic 25.0%
! CTACAAAAATAGAAAGATCA+GGG + chr3.3:83994527-83994546 None:intergenic 25.0%
! GATGCATTATAGATATTTGT+TGG - chr3.3:83995375-83995394 MS.gene38735:intron 25.0%
! GCATTTATTATGAGATAACA+AGG - chr3.3:83995547-83995566 MS.gene38735:intron 25.0%
!! AATCTGTCACTAATTTTGTA+AGG - chr3.3:83995353-83995372 MS.gene38735:intron 25.0%
!! AGAAAAAGTTTCAAGTAACA+TGG + chr3.3:83994577-83994596 None:intergenic 25.0%
!! AGAATCAAGTTTTCTCATTT+TGG - chr3.3:83994225-83994244 MS.gene38735:intron 25.0%
!! TTAAGCATGTATTTGAAACT+GGG - chr3.3:83994019-83994038 MS.gene38735:intron 25.0%
!! TTTAAGCATGTATTTGAAAC+TGG - chr3.3:83994018-83994037 MS.gene38735:intron 25.0%
!!! AAAGCTTTGAATGAAATGAA+TGG - chr3.3:83994702-83994721 MS.gene38735:CDS 25.0%
!!! ATGAATTTTGAAAGCTTAGT+GGG - chr3.3:83993955-83993974 MS.gene38735:CDS 25.0%
!!! ATTGCAATAATGTCACTTTT+TGG + chr3.3:83993892-83993911 None:intergenic 25.0%
!!! ATTTTTTCACCAAACAAATG+TGG + chr3.3:83993924-83993943 None:intergenic 25.0%
!!! CATGTGCATTAATAGTTTTT+TGG - chr3.3:83993790-83993809 MS.gene38735:intron 25.0%
!!! GCTTTGTTTTATGGTATAAT+TGG - chr3.3:83994987-83995006 MS.gene38735:CDS 25.0%
!!! TATGAATTTTGAAAGCTTAG+TGG - chr3.3:83993954-83993973 MS.gene38735:CDS 25.0%
!!! TATTTTTGTCGAGAAACTTA+TGG - chr3.3:83994933-83994952 MS.gene38735:CDS 25.0%
!!! TCTCATTTTGGTAGTAAAAA+TGG - chr3.3:83994237-83994256 MS.gene38735:intron 25.0%
!!! TTGCAATAATGTCACTTTTT+GGG + chr3.3:83993891-83993910 None:intergenic 25.0%
!!! TTTCTGAAGTTTATGGAAAA+TGG - chr3.3:83993555-83993574 MS.gene38735:intron 25.0%
AAGGTCTCTATTGATCTATA+GGG - chr3.3:83995778-83995797 MS.gene38735:intron 30.0%
AATGATGATAAGCCATGTAA+TGG + chr3.3:83993307-83993326 None:intergenic 30.0%
AATGCGGTATACATTCAATT+CGG - chr3.3:83994856-83994875 MS.gene38735:CDS 30.0%
AGAGTGAAATTTCAGATATG+AGG + chr3.3:83994819-83994838 None:intergenic 30.0%
ATGAAGTTCATGGTATTACT+AGG + chr3.3:83995833-83995852 None:intergenic 30.0%
CATGTAGTAGAAAAGAAATG+CGG - chr3.3:83994840-83994859 MS.gene38735:CDS 30.0%
CCTACAAAAATAGAAAGATC+AGG + chr3.3:83994528-83994547 None:intergenic 30.0%
CTTATTGCGAATAACCTTAA+TGG + chr3.3:83994337-83994356 None:intergenic 30.0%
GAAAGAAAGAAAAAGGGAAA+AGG + chr3.3:83993464-83993483 None:intergenic 30.0%
GAGAAATCACCATAAGAAAT+CGG + chr3.3:83994101-83994120 None:intergenic 30.0%
TAAAACCTACATGAAGTTCA+TGG + chr3.3:83995843-83995862 None:intergenic 30.0%
TAATACCATGAACTTCATGT+AGG - chr3.3:83995835-83995854 MS.gene38735:intron 30.0%
TAGCAGTTTAGATCTGAATT+CGG - chr3.3:83996130-83996149 MS.gene38735:intron 30.0%
TGCTGATAATAAAACTCTCT+GGG - chr3.3:83993367-83993386 MS.gene38735:intron 30.0%
TTCTATCATAAGCATGTGTT+TGG + chr3.3:83994140-83994159 None:intergenic 30.0%
! ACGTATTAACCGATTTCTTA+TGG - chr3.3:83994089-83994108 MS.gene38735:CDS 30.0%
! AGTTTGTTTCTTTATACAGG+AGG - chr3.3:83995236-83995255 MS.gene38735:intron 30.0%
! ATGAACTTCATGTAGGTTTT+AGG - chr3.3:83995842-83995861 MS.gene38735:intron 30.0%
! CTTTTTATGCCACATTTGTT+TGG - chr3.3:83993912-83993931 MS.gene38735:CDS 30.0%
! GATAATTTTCATCCATCCAA+TGG + chr3.3:83993406-83993425 None:intergenic 30.0%
! GCATTATAGATATTTGTTGG+AGG - chr3.3:83995378-83995397 MS.gene38735:intron 30.0%
! GTTTTGTACAATTTGCAAAC+AGG - chr3.3:83995496-83995515 MS.gene38735:intron 30.0%
! TGTCGTTTCTACTTAAGATT+CGG - chr3.3:83993589-83993608 MS.gene38735:intron 30.0%
! TTTGCAGATTTTCTCCATTA+AGG - chr3.3:83994320-83994339 MS.gene38735:intron 30.0%
!! TGAATTTTGAAAGCTTAGTG+GGG - chr3.3:83993956-83993975 MS.gene38735:CDS 30.0%
!!! AAAAAGTTCCCTTTTTTCTG+AGG + chr3.3:83993687-83993706 None:intergenic 30.0%
!!! AAAAGTTCCCTTTTTTCTGA+GGG + chr3.3:83993686-83993705 None:intergenic 30.0%
!!! CCTGATCTTTCTATTTTTGT+AGG - chr3.3:83994525-83994544 MS.gene38735:intron 30.0%
!!! TAGGTTTTAGGAGAAACAAA+AGG - chr3.3:83995854-83995873 MS.gene38735:intron 30.0%
AAATGTTTGCACTTCTGACA+TGG - chr3.3:83993829-83993848 MS.gene38735:intron 35.0%
AAGCTAAATGGTACAACAGT+TGG - chr3.3:83995653-83995672 MS.gene38735:intron 35.0%
AATGTTTGCACTTCTGACAT+GGG - chr3.3:83993830-83993849 MS.gene38735:intron 35.0%
ACAATTACCTGCTTATTTGC+CGG + chr3.3:83995713-83995732 None:intergenic 35.0%
AGGTCTCTATTGATCTATAG+GGG - chr3.3:83995779-83995798 MS.gene38735:intron 35.0%
ATAGACAGAATGAGACAATC+TGG + chr3.3:83996059-83996078 None:intergenic 35.0%
CAAGGTCTCTATTGATCTAT+AGG - chr3.3:83995777-83995796 MS.gene38735:intron 35.0%
CTGCTGATAATAAAACTCTC+TGG - chr3.3:83993366-83993385 MS.gene38735:intron 35.0%
GAATTCAGATCTAAACTGCT+AGG + chr3.3:83996131-83996150 None:intergenic 35.0%
GATAATAAAACTCTCTGGGT+CGG - chr3.3:83993371-83993390 MS.gene38735:intron 35.0%
GGTATTACTAGGTGAGTTAT+TGG + chr3.3:83995822-83995841 None:intergenic 35.0%
GTGTTAACCCTCAGAAAAAA+GGG - chr3.3:83993676-83993695 MS.gene38735:CDS 35.0%
GTTAAGATACCTGTTGGAAA+AGG - chr3.3:83995468-83995487 MS.gene38735:intron 35.0%
TAGATCAATAGAGACCTTGT+AGG + chr3.3:83995776-83995795 None:intergenic 35.0%
TATCCATAACCATCATAAGC+AGG + chr3.3:83996190-83996209 None:intergenic 35.0%
TGGTTGTTGAGATTCTCATT+TGG - chr3.3:83994257-83994276 MS.gene38735:intron 35.0%
TGTGTTAACCCTCAGAAAAA+AGG - chr3.3:83993675-83993694 MS.gene38735:CDS 35.0%
TTGTAGAATCAGCATCAGAT+TGG + chr3.3:83995283-83995302 None:intergenic 35.0%
TTGTGGAATTCACTTCACAT+GGG - chr3.3:83994385-83994404 MS.gene38735:intron 35.0%
TTGTTCTCTACCTCATACTT+AGG - chr3.3:83995729-83995748 MS.gene38735:intron 35.0%
TTTGTGGAATTCACTTCACA+TGG - chr3.3:83994384-83994403 MS.gene38735:intron 35.0%
! AAAGTTTTGCAGACTTATGC+TGG - chr3.3:83994417-83994436 MS.gene38735:intron 35.0%
! AAGTTTTGCAGACTTATGCT+GGG - chr3.3:83994418-83994437 MS.gene38735:intron 35.0%
! ACTTTAGCAGCTTTAACTGA+AGG + chr3.3:83994609-83994628 None:intergenic 35.0%
! AGATTCGGTTATGCTTCATT+TGG - chr3.3:83993604-83993623 MS.gene38735:intron 35.0%
! CTTTAGCAGCTTTAACTGAA+GGG + chr3.3:83994608-83994627 None:intergenic 35.0%
! GATTCGGTTATGCTTCATTT+GGG - chr3.3:83993605-83993624 MS.gene38735:intron 35.0%
!! CATTTGGGTTTCGTGTTTTT+GGG - chr3.3:83993620-83993639 MS.gene38735:intron 35.0%
!! TCAGCATTATTTCTGCAGAT+AGG + chr3.3:83995620-83995639 None:intergenic 35.0%
!! TCATTTGGGTTTCGTGTTTT+TGG - chr3.3:83993619-83993638 MS.gene38735:intron 35.0%
!!! GTTGTTTTTGATGCCAATAC+CGG - chr3.3:83994627-83994646 MS.gene38735:CDS 35.0%
AAATCCTCTGGCTATCAACA+AGG - chr3.3:83994774-83994793 MS.gene38735:CDS 40.0%
AACGCAGAAGCTTAATGTCT+CGG + chr3.3:83994068-83994087 None:intergenic 40.0%
AAGCAGACTTGTCAAACAGA+GGG - chr3.3:83994354-83994373 MS.gene38735:intron 40.0%
AATGTATGGGCCTAAGTATG+AGG + chr3.3:83995742-83995761 None:intergenic 40.0%
AGAGACTATCTCACCATACT+GGG + chr3.3:83995448-83995467 None:intergenic 40.0%
AGCAAACAGTTCGTCTTTCT+TGG - chr3.3:83995678-83995697 MS.gene38735:intron 40.0%
ATACCTGTTGGAAAAGGATG+TGG - chr3.3:83995474-83995493 MS.gene38735:intron 40.0%
CAAACAGTTCGTCTTTCTTG+GGG - chr3.3:83995680-83995699 MS.gene38735:intron 40.0%
CGAGATTGAAAACTGAAACG+AGG + chr3.3:83995110-83995129 None:intergenic 40.0%
CTGGAACATCTCTAGTAGTT+GGG - chr3.3:83995204-83995223 MS.gene38735:intron 40.0%
GCAAACAGTTCGTCTTTCTT+GGG - chr3.3:83995679-83995698 MS.gene38735:intron 40.0%
GTCTCTGTTAAGATACCTGT+TGG - chr3.3:83995462-83995481 MS.gene38735:intron 40.0%
TAAGCAGACTTGTCAAACAG+AGG - chr3.3:83994353-83994372 MS.gene38735:intron 40.0%
TATACAGGAGGCCAATCAAA+CGG - chr3.3:83995248-83995267 MS.gene38735:intron 40.0%
TCAATAGAGACCTTGTAGGA+TGG + chr3.3:83995772-83995791 None:intergenic 40.0%
TGAAAACTGCATGGAAAGTC+TGG - chr3.3:83995185-83995204 MS.gene38735:intron 40.0%
TGATAAGCCATGTAATGGTG+TGG + chr3.3:83993302-83993321 None:intergenic 40.0%
TTAGTGGGGTGTATTGGAAT+GGG - chr3.3:83993970-83993989 MS.gene38735:CDS 40.0%
! AAACCACATCCTTTTCCAAC+AGG + chr3.3:83995480-83995499 None:intergenic 40.0%
! AGACTTTCCATGCAGTTTTC+AGG + chr3.3:83995186-83995205 None:intergenic 40.0%
! ATGGTGTTTTCTGTTCTAGC+AGG - chr3.3:83994721-83994740 MS.gene38735:CDS 40.0%
! CTTTTCACCTGAAAACTGCA+TGG - chr3.3:83995176-83995195 MS.gene38735:intron 40.0%
! GATTCTCATTTGGTTCGAGA+TGG - chr3.3:83994267-83994286 MS.gene38735:intron 40.0%
! GTTTAAGGTTCAGTTGTTGC+AGG - chr3.3:83993852-83993871 MS.gene38735:intron 40.0%
! TAAGCATGTGTTTGGAACAG+CGG + chr3.3:83994132-83994151 None:intergenic 40.0%
! TCTGGAACATCTCTAGTAGT+TGG - chr3.3:83995203-83995222 MS.gene38735:intron 40.0%
! TGGTGTTTTCTGTTCTAGCA+GGG - chr3.3:83994722-83994741 MS.gene38735:CDS 40.0%
! TGGTTGTCTAAGATCTTCAG+CGG + chr3.3:83995421-83995440 None:intergenic 40.0%
! TTGTTATTACTCTGCTCCGT+TGG + chr3.3:83993134-83993153 None:intergenic 40.0%
!! GAAGCATTGCAGAAGCTAAA+TGG - chr3.3:83995641-83995660 MS.gene38735:intron 40.0%
AAGCTTAATGTCTCGGGAAG+CGG + chr3.3:83994061-83994080 None:intergenic 45.0%
ACCATAACCCTTTGAACGTC+CGG + chr3.3:83994649-83994668 None:intergenic 45.0%
ACGCAGAAGCTTAATGTCTC+GGG + chr3.3:83994067-83994086 None:intergenic 45.0%
ACTGTAAGTGAATGCGGTGA+AGG + chr3.3:83993185-83993204 None:intergenic 45.0%
ACTTGTCAAACAGAGGGGTA+TGG - chr3.3:83994360-83994379 MS.gene38735:intron 45.0%
AGAATCAGCATCAGATTGGC+TGG + chr3.3:83995279-83995298 None:intergenic 45.0%
AGACAACCATTCTCCCAGTA+TGG - chr3.3:83995432-83995451 MS.gene38735:intron 45.0%
AGCAGACTTGTCAAACAGAG+GGG - chr3.3:83994355-83994374 MS.gene38735:intron 45.0%
AGGATGGCCACACAAATGTA+TGG + chr3.3:83995756-83995775 None:intergenic 45.0%
ATCTCACCATACTGGGAGAA+TGG + chr3.3:83995441-83995460 None:intergenic 45.0%
ATGCTCTGGTCATAAGGATG+CGG + chr3.3:83996220-83996239 None:intergenic 45.0%
ATTTGTGTGGCCATCCTACA+AGG - chr3.3:83995759-83995778 MS.gene38735:intron 45.0%
CAAAGGGTTATGGTTTCGTC+AGG - chr3.3:83994655-83994674 MS.gene38735:CDS 45.0%
CAGAGACTATCTCACCATAC+TGG + chr3.3:83995449-83995468 None:intergenic 45.0%
CGAAAAGGTTGCTCTGTGTT+AGG + chr3.3:83994453-83994472 None:intergenic 45.0%
CGGAGCAGAGTAATAACAAC+AGG - chr3.3:83993135-83993154 MS.gene38735:CDS 45.0%
CTCTGGCTATCAACAAGGTA+TGG - chr3.3:83994779-83994798 MS.gene38735:CDS 45.0%
CTTAGGCCCATACATTTGTG+TGG - chr3.3:83995746-83995765 MS.gene38735:intron 45.0%
CTTAGTGGGGTGTATTGGAA+TGG - chr3.3:83993969-83993988 MS.gene38735:CDS 45.0%
GAAAGCTTAGTGGGGTGTAT+TGG - chr3.3:83993964-83993983 MS.gene38735:CDS 45.0%
GCACTTCTGACATGGGTTTA+AGG - chr3.3:83993837-83993856 MS.gene38735:intron 45.0%
GCATACATGCTCTGGTCATA+AGG + chr3.3:83996226-83996245 None:intergenic 45.0%
GGACCTGCTTATGATGGTTA+TGG - chr3.3:83996184-83996203 MS.gene38735:CDS 45.0%
GGATGGCCACACAAATGTAT+GGG + chr3.3:83995755-83995774 None:intergenic 45.0%
GGTGGAACTGTAAGTGAATG+CGG + chr3.3:83993191-83993210 None:intergenic 45.0%
GGTTATGGTTTCGTCAGGTT+TGG - chr3.3:83994660-83994679 MS.gene38735:CDS 45.0%
TAAGCCATGTAATGGTGTGG+TGG + chr3.3:83993299-83993318 None:intergenic 45.0%
TAAGGTTCAGTTGTTGCAGG+TGG - chr3.3:83993855-83993874 MS.gene38735:intron 45.0%
TGAGGCGGTAACATATGATG+CGG + chr3.3:83993263-83993282 None:intergenic 45.0%
TGATAGCCAGAGGATTTCCT+AGG + chr3.3:83994771-83994790 None:intergenic 45.0%
TGCTAAATGTCGCCCAGTTA+AGG + chr3.3:83994476-83994495 None:intergenic 45.0%
TTCGTCAGGTTTGGAGATGA+TGG - chr3.3:83994669-83994688 MS.gene38735:CDS 45.0%
! AACAGAGGGGTATGGATTTG+TGG - chr3.3:83994368-83994387 MS.gene38735:intron 45.0%
! AGCAACCTTTTCGCCTTAAC+TGG - chr3.3:83994460-83994479 MS.gene38735:intron 45.0%
! CGGTTCTGATTCGAAACCAA+CGG - chr3.3:83993115-83993134 MS.gene38735:CDS 45.0%
! GAATCAGCATCAGATTGGCT+GGG + chr3.3:83995278-83995297 None:intergenic 45.0%
! GCAACCTTTTCGCCTTAACT+GGG - chr3.3:83994461-83994480 MS.gene38735:intron 45.0%
! GGTTTGGAGATGATGGTGAA+AGG - chr3.3:83994676-83994695 MS.gene38735:CDS 45.0%
! TGTTGGTGTCCTCCATACAT+GGG + chr3.3:83996259-83996278 None:intergenic 45.0%
!! CATACCTTGTTGATAGCCAG+AGG + chr3.3:83994781-83994800 None:intergenic 45.0%
AACGGGCCAGCATATTATGG+GGG - chr3.3:83996163-83996182 MS.gene38735:CDS 50.0%
AACTGGGCGACATTTAGCAC+AGG - chr3.3:83994477-83994496 MS.gene38735:intron 50.0%
AAGCAGCAGCATACATGCTC+TGG + chr3.3:83996234-83996253 None:intergenic 50.0%
ACCCTTTGAACGTCCGGTAT+TGG + chr3.3:83994643-83994662 None:intergenic 50.0%
ACCGGACGTTCAAAGGGTTA+TGG - chr3.3:83994645-83994664 MS.gene38735:CDS 50.0%
AGATCTTCAGCGGTAGCACT+AGG + chr3.3:83995411-83995430 None:intergenic 50.0%
ATAATATGCTGGCCCGTTCC+AGG + chr3.3:83996161-83996180 None:intergenic 50.0%
CCTGCTTATTTGCCGGATTG+CGG + chr3.3:83995706-83995725 None:intergenic 50.0%
CTAGATCCATGATGCACGTG+AGG + chr3.3:83993344-83993363 None:intergenic 50.0%
GAACGGGCCAGCATATTATG+GGG - chr3.3:83996162-83996181 MS.gene38735:CDS 50.0%
GATATTGCATCGGAACCCAC+TGG + chr3.3:83993220-83993239 None:intergenic 50.0%
GATCTTCAGCGGTAGCACTA+GGG + chr3.3:83995410-83995429 None:intergenic 50.0%
GCAACTCCTAGGAAATCCTC+TGG - chr3.3:83994762-83994781 MS.gene38735:CDS 50.0%
GCCAATACCGGACGTTCAAA+GGG - chr3.3:83994639-83994658 MS.gene38735:CDS 50.0%
GGAACGGGCCAGCATATTAT+GGG - chr3.3:83996161-83996180 MS.gene38735:CDS 50.0%
GGTTCCGATGCAATATCCAC+CGG - chr3.3:83993223-83993242 MS.gene38735:CDS 50.0%
GTAAGTGAATGCGGTGAAGG+TGG + chr3.3:83993182-83993201 None:intergenic 50.0%
TAATATGCTGGCCCGTTCCA+GGG + chr3.3:83996160-83996179 None:intergenic 50.0%
TATGGGGGACCTGCTTATGA+TGG - chr3.3:83996178-83996197 MS.gene38735:CDS 50.0%
TCTAGCAGGGCAATGCGAAT+TGG - chr3.3:83994735-83994754 MS.gene38735:CDS 50.0%
TGCCAATACCGGACGTTCAA+AGG - chr3.3:83994638-83994657 MS.gene38735:CDS 50.0%
TGGAACGGGCCAGCATATTA+TGG - chr3.3:83996160-83996179 MS.gene38735:CDS 50.0%
TGTCTCGGGAAGCGGAAAAA+TGG + chr3.3:83994053-83994072 None:intergenic 50.0%
! CGGTGATTTGCACCATTGGA+TGG - chr3.3:83993391-83993410 MS.gene38735:intron 50.0%
! CTGTTGGTGTCCTCCATACA+TGG + chr3.3:83996260-83996279 None:intergenic 50.0%
! GGTGGCAGAGTTTTCTGTTG+CGG + chr3.3:83993161-83993180 None:intergenic 50.0%
! GTTGGTGTCCTCCATACATG+GGG + chr3.3:83996258-83996277 None:intergenic 50.0%
!! GAATTGGTGCTGCAACTCCT+AGG - chr3.3:83994751-83994770 MS.gene38735:CDS 50.0%
AAAAGGGAAAACCTCGCCGG+TGG + chr3.3:83993447-83993466 None:intergenic 55.0%
AATTCGGCAGTCCCTGGAAC+GGG - chr3.3:83996146-83996165 MS.gene38735:CDS 55.0%
AGTGAATGCGGTGAAGGTGG+TGG + chr3.3:83993179-83993198 None:intergenic 55.0%
CCGCAATCCGGCAAATAAGC+AGG - chr3.3:83995703-83995722 MS.gene38735:intron 55.0%
GAATTCGGCAGTCCCTGGAA+CGG - chr3.3:83996145-83996164 MS.gene38735:CDS 55.0%
GATCTGAATTCGGCAGTCCC+TGG - chr3.3:83996140-83996159 MS.gene38735:CDS 55.0%
GCAGGTCCCCCATAATATGC+TGG + chr3.3:83996172-83996191 None:intergenic 55.0%
GCCATGTAATGGTGTGGTGG+CGG + chr3.3:83993296-83993315 None:intergenic 55.0%
GCTGCTTACCCCATGTATGG+AGG - chr3.3:83996247-83996266 MS.gene38735:CDS 55.0%
GGGAAAAGGGAAAACCTCGC+CGG + chr3.3:83993450-83993469 None:intergenic 55.0%
GTCGCCCAGTTAAGGCGAAA+AGG + chr3.3:83994468-83994487 None:intergenic 55.0%
TCCGATGCAATATCCACCGG+CGG - chr3.3:83993226-83993245 MS.gene38735:CDS 55.0%
TCTTTCTTGGGGCCGCAATC+CGG - chr3.3:83995691-83995710 MS.gene38735:intron 55.0%
! CACCGTTGTTTCGCTTCCAC+CGG - chr3.3:83993428-83993447 MS.gene38735:intron 55.0%
! GCTGCTGCTTACCCCATGTA+TGG - chr3.3:83996244-83996263 MS.gene38735:CDS 55.0%
! GGGTCGGTGATTTGCACCAT+TGG - chr3.3:83993387-83993406 MS.gene38735:intron 55.0%
!! ATGTAATGGTGTGGTGGCGG+CGG + chr3.3:83993293-83993312 None:intergenic 55.0%
AGTTCCACCACCGCACCAGT+GGG - chr3.3:83993202-83993221 MS.gene38735:CDS 60.0%
CACGTGCCTCACGTGCATCA+TGG - chr3.3:83993335-83993354 MS.gene38735:intron 60.0%
CAGCGGTAGCACTAGGGTCA+AGG + chr3.3:83995404-83995423 None:intergenic 60.0%
CATGATGCACGTGAGGCACG+TGG + chr3.3:83993337-83993356 None:intergenic 60.0%
CGCCGGTGGAAGCGAAACAA+CGG + chr3.3:83993433-83993452 None:intergenic 60.0%
CGGTGGAAGCGAAACAACGG+TGG + chr3.3:83993430-83993449 None:intergenic 60.0%
GCAATATCCACCGGCGGCAA+TGG - chr3.3:83993232-83993251 MS.gene38735:CDS 60.0%
GCCGCCACCACACCATTACA+TGG - chr3.3:83993292-83993311 MS.gene38735:intron 60.0%
GCCGCCGGTGGATATTGCAT+CGG + chr3.3:83993230-83993249 None:intergenic 60.0%
GGCGGCGGATAATGTTGAGG+CGG + chr3.3:83993278-83993297 None:intergenic 60.0%
TGCATCGGAACCCACTGGTG+CGG + chr3.3:83993215-83993234 None:intergenic 60.0%
TGCGGCATTACCATTGCCGC+CGG + chr3.3:83993245-83993264 None:intergenic 60.0%
TTGTTTCGCTTCCACCGGCG+AGG - chr3.3:83993433-83993452 MS.gene38735:intron 60.0%
! GGTGGCGGCGGATAATGTTG+AGG + chr3.3:83993281-83993300 None:intergenic 60.0%
!! GGCTGGGTGTGCCGTTTGAT+TGG + chr3.3:83995262-83995281 None:intergenic 60.0%
ATCGGAACCCACTGGTGCGG+TGG + chr3.3:83993212-83993231 None:intergenic 65.0%
CAGTTCCACCACCGCACCAG+TGG - chr3.3:83993201-83993220 MS.gene38735:CDS 65.0%
GGCATTACCATTGCCGCCGG+TGG + chr3.3:83993242-83993261 None:intergenic 65.0%
GGAACCCACTGGTGCGGTGG+TGG + chr3.3:83993209-83993228 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 83993101 83996291 83993101 ID=MS.gene38735
chr3.3 mRNA 83993101 83996291 83993101 ID=MS.gene38735.t1;Parent=MS.gene38735
chr3.3 exon 83996139 83996291 83996139 ID=MS.gene38735.t1.exon1;Parent=MS.gene38735.t1
chr3.3 CDS 83996139 83996291 83996139 ID=cds.MS.gene38735.t1;Parent=MS.gene38735.t1
chr3.3 exon 83994597 83995065 83994597 ID=MS.gene38735.t1.exon2;Parent=MS.gene38735.t1
chr3.3 CDS 83994597 83995065 83994597 ID=cds.MS.gene38735.t1;Parent=MS.gene38735.t1
chr3.3 exon 83994082 83994137 83994082 ID=MS.gene38735.t1.exon3;Parent=MS.gene38735.t1
chr3.3 CDS 83994082 83994137 83994082 ID=cds.MS.gene38735.t1;Parent=MS.gene38735.t1
chr3.3 exon 83993875 83994005 83993875 ID=MS.gene38735.t1.exon4;Parent=MS.gene38735.t1
chr3.3 CDS 83993875 83994005 83993875 ID=cds.MS.gene38735.t1;Parent=MS.gene38735.t1
chr3.3 exon 83993668 83993764 83993668 ID=MS.gene38735.t1.exon5;Parent=MS.gene38735.t1
chr3.3 CDS 83993668 83993764 83993668 ID=cds.MS.gene38735.t1;Parent=MS.gene38735.t1
chr3.3 exon 83993101 83993256 83993101 ID=MS.gene38735.t1.exon6;Parent=MS.gene38735.t1
chr3.3 CDS 83993101 83993256 83993101 ID=cds.MS.gene38735.t1;Parent=MS.gene38735.t1
Gene Sequence

>MS.gene38735

ATGCAATCAACAAACGGTTCTGATTCGAAACCAACGGAGCAGAGTAATAACAACAGGCCGCAACAGAAAACTCTGCCACCACCTTCACCGCATTCACTTACAGTTCCACCACCGCACCAGTGGGTTCCGATGCAATATCCACCGGCGGCAATGGTAATGCCGCATCATATGTTACCGCCTCAACATTATCCGCCGCCACCACACCATTACATGGCTTATCATCATTATCTTCACCACGTGCCTCACGTGCATCATGGATCTAGTGCTGCTGATAATAAAACTCTCTGGGTCGGTGATTTGCACCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTCCACCGGCGAGGTTTTCCCTTTTCCCTTTTTCTTTCTTTCTTTTTGTTTTTTCGTTAGTGATTTTATTTATGAACATTAAATCGTATTTTTATGTTTTGTTACTTTTATGTTTTCTGAAGTTTATGGAAAATGGATATTACAGTTTGTCGTTTCTACTTAAGATTCGGTTATGCTTCATTTGGGTTTCGTGTTTTTGGGTTTTTTTGTTATTAAGTAAATTTTTTGGGTTTTGTGTTAACCCTCAGAAAAAAGGGAACTTTTTTTTTTTTTTACTAATTGTGTATGTAGTTATAGTACAATTGTTAAATCAAGTTTAAAGATTAGTAATTGAAAAGATATTAAAGCCATGTGCATTAATAGTTTTTTGGATTAAAGAGAAGATCGAAATGTTTGCACTTCTGACATGGGTTTAAGGTTCAGTTGTTGCAGGTGGCTAGATTTAACCCAAAAAGTGACATTATTGCAATCTTTTTATGCCACATTTGTTTGGTGAAAAAATAGTACTGTACTATGAATTTTGAAAGCTTAGTGGGGTGTATTGGAATGGGATTTTAAAGCATTTTTAAAGAGTTTTTTAAGCATGTATTTGAAACTGGGTTTGCAAACCATTTTTCCGCTTCCCGAGACATTAAGCTTCTGCGTTGACGTATTAACCGATTTCTTATGGTGATTTCTCAAAATATGCCGCTGTTCCAAACACATGCTTATGATAGAAAATTACCGTGATATTCAATCGAGATTATTATTTAATCCAAATAAATGTTGTGGTATTTATTTAGGAGAATCAAGTTTTCTCATTTTGGTAGTAAAAATGGTTGTTGAGATTCTCATTTGGTTCGAGATGGATAAACTTTTGCATCTAATTGACATGCATTTTTGCAGATTTTCTCCATTAAGGTTATTCGCAATAAGCAGACTTGTCAAACAGAGGGGTATGGATTTGTGGAATTCACTTCACATGGGACAGCTGAGAAAGTTTTGCAGACTTATGCTGGGATGTTGATGCCTAACACAGAGCAACCTTTTCGCCTTAACTGGGCGACATTTAGCACAGGAGATCACAAACGCTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATACCATGTTACTTGAAACTTTTTCTGATAAATACCCTTCAGTTAAAGCTGCTAAAGTTGTTTTTGATGCCAATACCGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGGTGAAAGGTCTAAAGCTTTGAATGAAATGAATGGTGTTTTCTGTTCTAGCAGGGCAATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGTATGGCAACTTATATAGCGCCTCATATCTGAAATTTCACTCTTCATGTAGTAGAAAAGAAATGCGGTATACATTCAATTCGGAGACAAACAATTTTAGATATTTTTTTATGCTCAAATTGTATTTGTTCTGCTTTGTATTTTTGTCGAGAAACTTATGGAATTGCATTTTTATTGCTCATATAAATGTATGCTTTGTTTTATGGTATAATTGGCGATATCAATTTTGTTAATAAAATGTTATTTGTTTCTAATTAGCAGACAAGTAGTAAATTCATAGAATTTCCTGAATCTATTCACTTGTTTATTTCTCCTCGTTTCAGTTTTCAATCTCGTGTAGTTATTTTTTTTAATGTCTCTCCATTTTAACATTTGCATATGCTTTTCACCTGAAAACTGCATGGAAAGTCTGGAACATCTCTAGTAGTTGGGTATTGATTTAGTTTGTTTCTTTATACAGGAGGCCAATCAAACGGCACACCCAGCCAATCTGATGCTGATTCTACAAATACAACTGTTAGTTTTTCAGCTTTTTATTAAATTTTTTTTAGAGAAGTTAATCTGTCACTAATTTTGTAAGGATGCATTATAGATATTTGTTGGAGGCCTTGACCCTAGTGCTACCGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGGTAAAATTTATATCCAATTTTTACTCTATGCATTTATTATGAGATAACAAGGTTTTTACTACACTCGCAATGTGTTCACTAATTAATCATTCTAAACAACCTATCTGCAGAAATAATGCTGAAGAAGCATTGCAGAAGCTAAATGGTACAACAGTTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGGTAATTGTTCTCTACCTCATACTTAGGCCCATACATTTGTGTGGCCATCCTACAAGGTCTCTATTGATCTATAGGGGCAAGTGTAATTTAATGACCAATAACTCACCTAGTAATACCATGAACTTCATGTAGGTTTTAGGAGAAACAAAAGGTCTATTTGTTCTCAGCTGCTAAATTTAATGAAGTGTAGTTTAATGCAGTCATTATATGATTTTTTTTGCTTAATTCGAATCAATCAAGTTTTGTTCATGATTATTTTGTTCATTAATGAATTTTCACATTCAAATGAAGACTCTAAGAATAACTATTGATGAGTATAGCTCATTGAATACCAGATTGTCTCATTCTGTCTATCATTGATTGCATTTTGCAATTGTTCTATGTCAATTGACACATCTCTTTGCCTAGCAGTTTAGATCTGAATTCGGCAGTCCCTGGAACGGGCCAGCATATTATGGGGGACCTGCTTATGATGGTTATGGATATGCTATGCCGCATCCTTATGACCAGAGCATGTATGCTGCTGCTTACCCCATGTATGGAGGACACCAACAGCAAGTAAGCTAA
Protein sequence

>MS.gene38735.t1

MQSTNGSDSKPTEQSNNNRPQQKTLPPPSPHSLTVPPPHQWVPMQYPPAAMIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAMPHPYDQSMYAAAYPMYGGHQQQVS