Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059340.t1 | XP_013461530.1 | 100 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 8.20E-60 | 239.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059340.t1 | P49206 | 83.5 | 115 | 19 | 0 | 1 | 115 | 1 | 115 | 7.8e-51 | 201.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059340.t1 | A0A072VBJ7 | 100.0 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 5.9e-60 | 239.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene059340 | 0.848219 | 7.05E-60 | -1.69E-46 |
| MS.gene049387 | MS.gene059340 | 0.865149 | 7.28E-65 | -1.69E-46 |
| MS.gene050134 | MS.gene059340 | 0.849337 | 3.45E-60 | -1.69E-46 |
| MS.gene050252 | MS.gene059340 | 0.812443 | 4.23E-51 | -1.69E-46 |
| MS.gene051925 | MS.gene059340 | 0.823422 | 1.40E-53 | -1.69E-46 |
| MS.gene052666 | MS.gene059340 | 0.834922 | 2.26E-56 | -1.69E-46 |
| MS.gene053224 | MS.gene059340 | 0.812675 | 3.76E-51 | -1.69E-46 |
| MS.gene054624 | MS.gene059340 | 0.83104 | 2.09E-55 | -1.69E-46 |
| MS.gene057272 | MS.gene059340 | 0.851117 | 1.09E-60 | -1.69E-46 |
| MS.gene057321 | MS.gene059340 | 0.846393 | 2.23E-59 | -1.69E-46 |
| MS.gene057641 | MS.gene059340 | 0.83901 | 2.05E-57 | -1.69E-46 |
| MS.gene057643 | MS.gene059340 | 0.840675 | 7.54E-58 | -1.69E-46 |
| MS.gene059340 | MS.gene060483 | 0.851819 | 6.92E-61 | -1.69E-46 |
| MS.gene059340 | MS.gene06169 | 0.889561 | 2.17E-73 | -1.69E-46 |
| MS.gene059340 | MS.gene06433 | 0.847903 | 8.61E-60 | -1.69E-46 |
| MS.gene059340 | MS.gene06617 | 0.884838 | 1.36E-71 | -1.69E-46 |
| MS.gene059340 | MS.gene066583 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene059340 | MS.gene066811 | 0.842955 | 1.89E-58 | -1.69E-46 |
| MS.gene059340 | MS.gene067331 | 0.865979 | 3.99E-65 | -1.69E-46 |
| MS.gene059340 | MS.gene06803 | 0.845626 | 3.61E-59 | -1.69E-46 |
| MS.gene059340 | MS.gene06833 | 0.88447 | 1.87E-71 | -1.69E-46 |
| MS.gene059340 | MS.gene06999 | 0.819095 | 1.39E-52 | -1.69E-46 |
| MS.gene059340 | MS.gene072152 | 0.808976 | 2.38E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene073358 | 0.858455 | 8.14E-63 | -1.69E-46 |
| MS.gene059340 | MS.gene074400 | 0.897674 | 1.12E-76 | -1.69E-46 |
| MS.gene059340 | MS.gene08521 | 0.858564 | 7.55E-63 | -1.69E-46 |
| MS.gene059340 | MS.gene08869 | 0.878004 | 3.99E-69 | -1.69E-46 |
| MS.gene059340 | MS.gene08870 | 0.861116 | 1.29E-63 | -1.69E-46 |
| MS.gene059340 | MS.gene08871 | 0.856278 | 3.58E-62 | -1.69E-46 |
| MS.gene059340 | MS.gene09038 | 0.834687 | 2.59E-56 | -1.69E-46 |
| MS.gene059340 | MS.gene09204 | 0.839564 | 1.47E-57 | -1.69E-46 |
| MS.gene059340 | MS.gene20295 | 0.859865 | 3.08E-63 | -1.69E-46 |
| MS.gene059340 | MS.gene23303 | 0.821525 | 3.86E-53 | -1.69E-46 |
| MS.gene059340 | MS.gene25236 | 0.878661 | 2.34E-69 | -1.69E-46 |
| MS.gene059340 | MS.gene25240 | 0.81785 | 2.66E-52 | -1.69E-46 |
| MS.gene059340 | MS.gene25639 | 0.878739 | 2.20E-69 | -1.69E-46 |
| MS.gene059340 | MS.gene25649 | 0.824044 | 9.99E-54 | -1.69E-46 |
| MS.gene059340 | MS.gene25903 | 0.878203 | 3.40E-69 | -1.69E-46 |
| MS.gene059340 | MS.gene26005 | 0.839324 | 1.70E-57 | -1.69E-46 |
| MS.gene059340 | MS.gene26343 | 0.847142 | 1.39E-59 | -1.69E-46 |
| MS.gene059340 | MS.gene26792 | 0.809279 | 2.05E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene27003 | 0.854509 | 1.17E-61 | -1.69E-46 |
| MS.gene059340 | MS.gene27028 | 0.802352 | 5.84E-49 | -1.69E-46 |
| MS.gene059340 | MS.gene27265 | 0.870637 | 1.26E-66 | -1.69E-46 |
| MS.gene059340 | MS.gene28147 | 0.817116 | 3.90E-52 | -1.69E-46 |
| MS.gene059340 | MS.gene30990 | 0.856579 | 2.92E-62 | -1.69E-46 |
| MS.gene059340 | MS.gene34372 | 0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene059340 | MS.gene38035 | 0.862059 | 6.62E-64 | -1.69E-46 |
| MS.gene059340 | MS.gene38222 | 0.854097 | 1.54E-61 | -1.69E-46 |
| MS.gene059340 | MS.gene38735 | 0.827928 | 1.19E-54 | -1.69E-46 |
| MS.gene059340 | MS.gene46387 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene059340 | MS.gene50640 | 0.884106 | 2.54E-71 | -1.69E-46 |
| MS.gene059340 | MS.gene50756 | 0.853586 | 2.17E-61 | -1.69E-46 |
| MS.gene059340 | MS.gene50758 | 0.848805 | 4.85E-60 | -1.69E-46 |
| MS.gene059340 | MS.gene55619 | 0.851108 | 1.10E-60 | -1.69E-46 |
| MS.gene059340 | MS.gene55890 | 0.885868 | 5.61E-72 | -1.69E-46 |
| MS.gene059340 | MS.gene58173 | 0.887355 | 1.53E-72 | -1.69E-46 |
| MS.gene059340 | MS.gene59228 | 0.833699 | 4.59E-56 | -1.69E-46 |
| MS.gene059340 | MS.gene61251 | 0.827598 | 1.43E-54 | -1.69E-46 |
| MS.gene059340 | MS.gene62561 | 0.824046 | 9.98E-54 | -1.69E-46 |
| MS.gene059340 | MS.gene62620 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene059340 | MS.gene62683 | 0.843253 | 1.57E-58 | -1.69E-46 |
| MS.gene059340 | MS.gene63973 | 0.824691 | 7.04E-54 | -1.69E-46 |
| MS.gene059340 | MS.gene70316 | 0.87699 | 8.99E-69 | -1.69E-46 |
| MS.gene059340 | MS.gene70579 | 0.8747 | 5.50E-68 | -1.69E-46 |
| MS.gene059340 | MS.gene72382 | 0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene059340 | MS.gene79721 | 0.834208 | 3.42E-56 | -1.69E-46 |
| MS.gene059340 | MS.gene82009 | 0.810483 | 1.13E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene82038 | 0.808068 | 3.71E-50 | -1.69E-46 |
| MS.gene059340 | MS.gene82545 | 0.810733 | 9.95E-51 | -1.69E-46 |
| MS.gene059340 | MS.gene88918 | 0.872378 | 3.33E-67 | -1.69E-46 |
| MS.gene059340 | MS.gene92142 | 0.850515 | 1.62E-60 | -1.69E-46 |
| MS.gene059340 | MS.gene96225 | 0.837094 | 6.36E-57 | -1.69E-46 |
| MS.gene059340 | MS.gene98171 | 0.816739 | 4.73E-52 | -1.69E-46 |
| MS.gene059340 | MS.gene98978 | 0.846607 | 1.95E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059340 | MS.gene020871 | PPI |
| MS.gene059340 | MS.gene013415 | PPI |
| MS.gene059340 | MS.gene067809 | PPI |
| MS.gene013415 | MS.gene059340 | PPI |
| MS.gene38035 | MS.gene059340 | PPI |
| MS.gene059340 | MS.gene83159 | PPI |
| MS.gene059340 | MS.gene81244 | PPI |
| MS.gene59772 | MS.gene059340 | PPI |
| MS.gene059340 | MS.gene049387 | PPI |
| MS.gene059340 | MS.gene016408 | PPI |
| MS.gene059340 | MS.gene016407 | PPI |
| MS.gene08205 | MS.gene059340 | PPI |
| MS.gene51868 | MS.gene059340 | PPI |
| MS.gene38222 | MS.gene059340 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059340.t1 | MTR_3g094220 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 1.10e-92 | 263 |
| MS.gene059340.t1 | MTR_5g097200 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 2.48e-87 | 250 |
| MS.gene059340.t1 | MTR_3g094220 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 2.65e-74 | 217 |
| MS.gene059340.t1 | MTR_5g097200 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 1.87e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059340.t1 | AT2G40590 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 2.73e-68 | 202 |
| MS.gene059340.t1 | AT3G56340 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 3.96e-68 | 201 |
| MS.gene059340.t1 | AT2G40510 | 83.621 | 116 | 19 | 0 | 1 | 116 | 1 | 116 | 4.37e-68 | 201 |
Find 45 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCGGGCTGGCCGGGCC+TGG | 0.190447 | 3.4:+85862543 | None:intergenic |
| TGACCGGGCTGGCCGGGCCT+GGG | 0.257962 | 3.4:+85862544 | None:intergenic |
| AGCAGGGCGTGGGGCTTGAC+CGG | 0.292902 | 3.4:+85862528 | None:intergenic |
| TGGGGCTTGACCGGGCTGGC+CGG | 0.319724 | 3.4:+85862537 | None:intergenic |
| AGCTGCAGTTAGGGATGTTC+AGG | 0.334420 | 3.4:-85864080 | MS.gene059340:CDS |
| GGGGCTTGACCGGGCTGGCC+GGG | 0.376921 | 3.4:+85862538 | None:intergenic |
| GCTCCTGGTCCAGCAGGGCG+TGG | 0.386043 | 3.4:+85862517 | None:intergenic |
| GGTCAAGCCCCACGCCCTGC+TGG | 0.391542 | 3.4:-85862526 | MS.gene059340:CDS |
| CTCCTGGTCCAGCAGGGCGT+GGG | 0.393652 | 3.4:+85862518 | None:intergenic |
| GGAGGAGCTCCTGGTCCAGC+AGG | 0.410657 | 3.4:+85862511 | None:intergenic |
| GCACGGGCTGGAGGAGCTCC+TGG | 0.413579 | 3.4:+85862502 | None:intergenic |
| CAGACGTTCAAGCGTAGAAA+TGG | 0.419772 | 3.4:-85864312 | MS.gene059340:CDS |
| TTGTTGAACAAGCTGCAGTT+AGG | 0.422831 | 3.4:-85864090 | MS.gene059340:CDS |
| GCATCTTCACATAGAGCTTA+GGG | 0.429592 | 3.4:+85863933 | None:intergenic |
| GCACCCAGGCCCGGCCAGCC+CGG | 0.443884 | 3.4:-85862547 | MS.gene059340:CDS |
| TGCATCTTCACATAGAGCTT+AGG | 0.448152 | 3.4:+85863932 | None:intergenic |
| GCCCCACGCCCTGCTGGACC+AGG | 0.451018 | 3.4:-85862520 | MS.gene059340:CDS |
| GCAGGGCGTGGGGCTTGACC+GGG | 0.458801 | 3.4:+85862529 | None:intergenic |
| GGCGTGGGGCTTGACCGGGC+TGG | 0.467003 | 3.4:+85862533 | None:intergenic |
| TGTTGAACAAGCTGCAGTTA+GGG | 0.467003 | 3.4:-85864089 | MS.gene059340:CDS |
| AGCCTCCACAGCGTTTCATT+AGG | 0.474568 | 3.4:-85863838 | MS.gene059340:CDS |
| AAGGATGACGCACCCAGGCC+CGG | 0.480226 | 3.4:-85862556 | MS.gene059340:CDS |
| AGCTTCATCTAGGCACGGGC+TGG | 0.485726 | 3.4:+85862490 | None:intergenic |
| CTATCCACTCTCACGTTGTG+AGG | 0.500174 | 3.4:-85863892 | MS.gene059340:CDS |
| CACAGCGTTTCATTAGGCGC+AGG | 0.511553 | 3.4:-85863832 | MS.gene059340:CDS |
| TCCTGGTCCAGCAGGGCGTG+GGG | 0.514682 | 3.4:+85862519 | None:intergenic |
| GGGTCAGATCTCGCACTGAC+AGG | 0.523518 | 3.4:-85863871 | MS.gene059340:CDS |
| GGTCGTAACAAGCATGGCCG+TGG | 0.529078 | 3.4:-85864288 | MS.gene059340:CDS |
| TTCATCCGTTGCTCCAACTG+TGG | 0.535536 | 3.4:-85864255 | MS.gene059340:CDS |
| TTCATCTAGGCACGGGCTGG+AGG | 0.539272 | 3.4:+85862493 | None:intergenic |
| CGCCTAATGAAACGCTGTGG+AGG | 0.567724 | 3.4:+85863836 | None:intergenic |
| TATTAGCTTCATCTAGGCAC+GGG | 0.571744 | 3.4:+85862486 | None:intergenic |
| CTGTGGAAAATGCTGTCCTA+AGG | 0.573602 | 3.4:-85864238 | MS.gene059340:intron |
| ATATTAGCTTCATCTAGGCA+CGG | 0.579130 | 3.4:+85862485 | None:intergenic |
| ACGTTCAAGCGTAGAAATGG+AGG | 0.581703 | 3.4:-85864309 | MS.gene059340:CDS |
| GAGGAGCTCCTGGTCCAGCA+GGG | 0.594077 | 3.4:+85862512 | None:intergenic |
| ACAGCGTTTCATTAGGCGCA+GGG | 0.598137 | 3.4:-85863831 | MS.gene059340:intron |
| TGACCCTCACAACGTGAGAG+TGG | 0.612357 | 3.4:+85863888 | None:intergenic |
| TATCCACTCTCACGTTGTGA+GGG | 0.624539 | 3.4:-85863891 | MS.gene059340:CDS |
| GGATGAATTTGACATGGCCA+CGG | 0.627886 | 3.4:+85864271 | None:intergenic |
| AATGGAGGTCGTAACAAGCA+TGG | 0.634174 | 3.4:-85864294 | MS.gene059340:CDS |
| TCAGATCTCGCACTGACAGG+AGG | 0.634180 | 3.4:-85863868 | MS.gene059340:CDS |
| AGCAACGGATGAATTTGACA+TGG | 0.665067 | 3.4:+85864265 | None:intergenic |
| AACGTGAGAGTGGATAGCAC+AGG | 0.683104 | 3.4:+85863898 | None:intergenic |
| CTGCGCCTAATGAAACGCTG+TGG | 0.693414 | 3.4:+85863833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTATTAGATTATTTT+TGG | + | chr3.4:85863393-85863412 | None:intergenic | 10.0% |
| !!! | ATTTTTTTGTTTTGTTAAAT+AGG | - | chr3.4:85862754-85862773 | MS.gene059340:intron | 10.0% |
| !! | AATTATGCTATATATTTCAT+TGG | - | chr3.4:85864289-85864308 | MS.gene059340:CDS | 15.0% |
| !! | ATACAATTGTGATAAATTTA+GGG | + | chr3.4:85863233-85863252 | None:intergenic | 15.0% |
| !! | CAAAATATGAAATCTAAATT+GGG | + | chr3.4:85864085-85864104 | None:intergenic | 15.0% |
| !! | CAATTAACAAACAAATTTAA+TGG | + | chr3.4:85862565-85862584 | None:intergenic | 15.0% |
| !! | TCAAAATATGAAATCTAAAT+TGG | + | chr3.4:85864086-85864105 | None:intergenic | 15.0% |
| !!! | GTTTATTTAATTCTTTTTGA+AGG | - | chr3.4:85864325-85864344 | MS.gene059340:intron | 15.0% |
| !! | AAAAAAAGATGAAATACCTT+AGG | + | chr3.4:85862681-85862700 | None:intergenic | 20.0% |
| !! | AAAACCAACAAAAGTAAATA+AGG | + | chr3.4:85863111-85863130 | None:intergenic | 20.0% |
| !! | AAACCAACAAAAGTAAATAA+GGG | + | chr3.4:85863110-85863129 | None:intergenic | 20.0% |
| !! | ACAATTGTATGTTTCTTTAT+TGG | - | chr3.4:85863243-85863262 | MS.gene059340:intron | 20.0% |
| !! | ATATAAACCTAAAGCATATT+AGG | + | chr3.4:85863508-85863527 | None:intergenic | 20.0% |
| !! | CATACAATTGTGATAAATTT+AGG | + | chr3.4:85863234-85863253 | None:intergenic | 20.0% |
| !! | TACAATTGTGATAAATTTAG+GGG | + | chr3.4:85863232-85863251 | None:intergenic | 20.0% |
| !! | TTGAAGGAAAAAAAAATAGT+TGG | + | chr3.4:85864057-85864076 | None:intergenic | 20.0% |
| !!! | TTTATCTGTTTCTGTAAAAA+TGG | - | chr3.4:85863411-85863430 | MS.gene059340:intron | 20.0% |
| ! | AACAAAAGTAAATAAGGGAA+AGG | + | chr3.4:85863105-85863124 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAATAGTTGG+CGG | + | chr3.4:85864054-85864073 | None:intergenic | 25.0% |
| ! | GATAACTTGATTTAGACATT+TGG | - | chr3.4:85863864-85863883 | MS.gene059340:CDS | 25.0% |
| ! | TCTTTATTGGATTCGATATA+GGG | - | chr3.4:85863256-85863275 | MS.gene059340:intron | 25.0% |
| ! | TTCTTTAGCTATGAAATTGT+TGG | - | chr3.4:85864227-85864246 | MS.gene059340:intron | 25.0% |
| ! | TTCTTTATTGGATTCGATAT+AGG | - | chr3.4:85863255-85863274 | MS.gene059340:intron | 25.0% |
| !! | ATAAAACAAATGTGCTATTG+AGG | + | chr3.4:85863922-85863941 | None:intergenic | 25.0% |
| !! | ATATATCTTGTTACTTGAGT+GGG | - | chr3.4:85864128-85864147 | MS.gene059340:intron | 25.0% |
| !! | TTTCTTTTCATGTTGTCTTT+AGG | - | chr3.4:85863960-85863979 | MS.gene059340:intron | 25.0% |
| !!! | ATTTTGATTATCCTCTCTTT+TGG | - | chr3.4:85864099-85864118 | MS.gene059340:CDS | 25.0% |
| !!! | TCTAAATTGGGATATTTTGA+AGG | + | chr3.4:85864073-85864092 | None:intergenic | 25.0% |
| !!! | TTTCCCTTATTTACTTTTGT+TGG | - | chr3.4:85863104-85863123 | MS.gene059340:intron | 25.0% |
| AAAAAAAAATAGTTGGCGGT+TGG | + | chr3.4:85864050-85864069 | None:intergenic | 30.0% | |
| AAGTCATCCTAAATGATAAC+AGG | + | chr3.4:85864017-85864036 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr3.4:85863563-85863582 | MS.gene059340:intron | 30.0% | |
| ACAATGATAATACCTCAGAT+TGG | - | chr3.4:85863205-85863224 | MS.gene059340:intron | 30.0% | |
| CTCTTGGTTTATATAACTAG+TGG | - | chr3.4:85863586-85863605 | MS.gene059340:intron | 30.0% | |
| TATATCTTCAACCAAAAGAG+AGG | + | chr3.4:85864113-85864132 | None:intergenic | 30.0% | |
| ! | CTGTTTTCCTAATATGCTTT+AGG | - | chr3.4:85863498-85863517 | MS.gene059340:intron | 30.0% |
| ! | GATATATCTTGTTACTTGAG+TGG | - | chr3.4:85864127-85864146 | MS.gene059340:CDS | 30.0% |
| ! | TTTCATTGGTTGTGTCTAAT+TGG | - | chr3.4:85864303-85864322 | MS.gene059340:CDS | 30.0% |
| !! | AAAGAGCATCATTCACAAAT+TGG | + | chr3.4:85863732-85863751 | None:intergenic | 30.0% |
| !! | CTTTGAAATCTAATGTTGAG+AGG | - | chr3.4:85863176-85863195 | MS.gene059340:intron | 30.0% |
| AAGCTTGTGAAAATTGCCAT+CGG | + | chr3.4:85863346-85863365 | None:intergenic | 35.0% | |
| ATATAAACCAAGAGCCTGTT+TGG | + | chr3.4:85863580-85863599 | None:intergenic | 35.0% | |
| ATTGAGGTAGCATTTGAGAA+AGG | + | chr3.4:85863906-85863925 | None:intergenic | 35.0% | |
| CTCTTGGTTTATATAACCAG+TGG | - | chr3.4:85863672-85863691 | MS.gene059340:intron | 35.0% | |
| GAAAACATGAAAATAGCCGA+TGG | - | chr3.4:85863327-85863346 | MS.gene059340:intron | 35.0% | |
| GCTTATTTGAGCTTATCAAC+TGG | - | chr3.4:85863292-85863311 | MS.gene059340:intron | 35.0% | |
| GTGAATGCCTGTTATCATTT+AGG | - | chr3.4:85864007-85864026 | MS.gene059340:intron | 35.0% | |
| TAAACAGAAATGGTCCATAG+TGG | + | chr3.4:85863642-85863661 | None:intergenic | 35.0% | |
| TATCAGATACGGAGATTAAC+AGG | + | chr3.4:85862530-85862549 | None:intergenic | 35.0% | |
| TCATCACTACTTTATACCAC+TGG | + | chr3.4:85863691-85863710 | None:intergenic | 35.0% | |
| TCATCACTACTTTATGCTAC+TGG | + | chr3.4:85863533-85863552 | None:intergenic | 35.0% | |
| TCGTCACTACTTTATACTAC+TGG | + | chr3.4:85863767-85863786 | None:intergenic | 35.0% | |
| !! | GAGATTGAGAGTATCAGATA+CGG | + | chr3.4:85862541-85862560 | None:intergenic | 35.0% |
| AAATTTAGGGGTCCAATCTG+AGG | + | chr3.4:85863220-85863239 | None:intergenic | 40.0% | |
| ACGGAGATTAACAGGAGTTA+GGG | + | chr3.4:85862522-85862541 | None:intergenic | 40.0% | |
| AGAAATGGTCCATAGTGGTA+TGG | + | chr3.4:85863637-85863656 | None:intergenic | 40.0% | |
| AGCAACGGATGAATTTGACA+TGG | + | chr3.4:85862638-85862657 | None:intergenic | 40.0% | |
| ATATAAACCAAGAGCCTGCT+TGG | + | chr3.4:85863666-85863685 | None:intergenic | 40.0% | |
| CATTCACAAATTGGTCACAG+TGG | + | chr3.4:85863723-85863742 | None:intergenic | 40.0% | |
| CCAATGTGTCCAATTTGTGA+AGG | - | chr3.4:85863796-85863815 | MS.gene059340:intron | 40.0% | |
| CCATTTCTGTTTATCCAAGC+AGG | - | chr3.4:85863649-85863668 | MS.gene059340:intron | 40.0% | |
| CCTGCTTGGATAAACAGAAA+TGG | + | chr3.4:85863652-85863671 | None:intergenic | 40.0% | |
| CCTTCACAAATTGGACACAT+TGG | + | chr3.4:85863799-85863818 | None:intergenic | 40.0% | |
| GATATAGGGTCTGTTTGGAT+TGG | - | chr3.4:85863270-85863289 | MS.gene059340:intron | 40.0% | |
| GATTCGATATAGGGTCTGTT+TGG | - | chr3.4:85863265-85863284 | MS.gene059340:intron | 40.0% | |
| GCATCTTCACATAGAGCTTA+GGG | + | chr3.4:85862970-85862989 | None:intergenic | 40.0% | |
| GGTAGCATTTGAGAAAGGAT+AGG | + | chr3.4:85863901-85863920 | None:intergenic | 40.0% | |
| TACGGAGATTAACAGGAGTT+AGG | + | chr3.4:85862523-85862542 | None:intergenic | 40.0% | |
| TATAGTGTGCCATACCACTA+TGG | - | chr3.4:85863625-85863644 | MS.gene059340:intron | 40.0% | |
| TGCATCTTCACATAGAGCTT+AGG | + | chr3.4:85862971-85862990 | None:intergenic | 40.0% | |
| TGTGTCCAATTTGTGAAGGA+TGG | - | chr3.4:85863800-85863819 | MS.gene059340:intron | 40.0% | |
| TGTTGAACAAGCTGCAGTTA+GGG | - | chr3.4:85862811-85862830 | MS.gene059340:intron | 40.0% | |
| TGTTTATCCAAACAGGCTCT+TGG | - | chr3.4:85863570-85863589 | MS.gene059340:intron | 40.0% | |
| TTGTTGAACAAGCTGCAGTT+AGG | - | chr3.4:85862810-85862829 | MS.gene059340:intron | 40.0% | |
| ! | ATTTTCCACAGTTGGAGCAA+CGG | + | chr3.4:85862653-85862672 | None:intergenic | 40.0% |
| ! | CTATCAAGCGTTTTCTTGTG+AGG | - | chr3.4:85862783-85862802 | MS.gene059340:intron | 40.0% |
| AATGGAGGTCGTAACAAGCA+TGG | - | chr3.4:85862606-85862625 | MS.gene059340:intron | 45.0% | |
| ACGTTCAAGCGTAGAAATGG+AGG | - | chr3.4:85862591-85862610 | MS.gene059340:intron | 45.0% | |
| CACCACCATCCTTCACAAAT+TGG | + | chr3.4:85863808-85863827 | None:intergenic | 45.0% | |
| CAGACGTTCAAGCGTAGAAA+TGG | - | chr3.4:85862588-85862607 | MS.gene059340:intron | 45.0% | |
| CTGTGGAAAATGCTGTCCTA+AGG | - | chr3.4:85862662-85862681 | MS.gene059340:intron | 45.0% | |
| GGATGAATTTGACATGGCCA+CGG | + | chr3.4:85862632-85862651 | None:intergenic | 45.0% | |
| GTCCAATTTGTGAAGGATGG+TGG | - | chr3.4:85863803-85863822 | MS.gene059340:intron | 45.0% | |
| TATCCACTCTCACGTTGTGA+GGG | - | chr3.4:85863009-85863028 | MS.gene059340:intron | 45.0% | |
| TGTTTATCCAAGCAGGCTCT+TGG | - | chr3.4:85863656-85863675 | MS.gene059340:intron | 45.0% | |
| ! | AGGACAGCATTTTCCACAGT+TGG | + | chr3.4:85862661-85862680 | None:intergenic | 45.0% |
| AACGTGAGAGTGGATAGCAC+AGG | + | chr3.4:85863005-85863024 | None:intergenic | 50.0% | |
| ACAGCGTTTCATTAGGCGCA+GGG | - | chr3.4:85863069-85863088 | MS.gene059340:intron | 50.0% | |
| AGCCTCCACAGCGTTTCATT+AGG | - | chr3.4:85863062-85863081 | MS.gene059340:intron | 50.0% | |
| AGCTGCAGTTAGGGATGTTC+AGG | - | chr3.4:85862820-85862839 | MS.gene059340:intron | 50.0% | |
| CAGGAGTTAGGGATTCCGAT+CGG | + | chr3.4:85862511-85862530 | None:intergenic | 50.0% | |
| CTATCCACTCTCACGTTGTG+AGG | - | chr3.4:85863008-85863027 | MS.gene059340:intron | 50.0% | |
| TTCATCCGTTGCTCCAACTG+TGG | - | chr3.4:85862645-85862664 | MS.gene059340:intron | 50.0% | |
| !! | TTTTGAAGGATGACGCACCC+AGG | - | chr3.4:85864339-85864358 | MS.gene059340:intron | 50.0% |
| CACAGCGTTTCATTAGGCGC+AGG | - | chr3.4:85863068-85863087 | MS.gene059340:intron | 55.0% | |
| CGCCTAATGAAACGCTGTGG+AGG | + | chr3.4:85863067-85863086 | None:intergenic | 55.0% | |
| CTGCGCCTAATGAAACGCTG+TGG | + | chr3.4:85863070-85863089 | None:intergenic | 55.0% | |
| TGACCCTCACAACGTGAGAG+TGG | + | chr3.4:85863015-85863034 | None:intergenic | 55.0% | |
| ! | TCAGATCTCGCACTGACAGG+AGG | - | chr3.4:85863032-85863051 | MS.gene059340:intron | 55.0% |
| GGTCGTAACAAGCATGGCCG+TGG | - | chr3.4:85862612-85862631 | MS.gene059340:intron | 60.0% | |
| ! | GGGTCAGATCTCGCACTGAC+AGG | - | chr3.4:85863029-85863048 | MS.gene059340:intron | 60.0% |
| AAGGATGACGCACCCAGGCC+CGG | - | chr3.4:85864344-85864363 | MS.gene059340:intron | 65.0% | |
| GAGGAGCTCCTGGTCCAGCA+GGG | + | chr3.4:85864391-85864410 | None:intergenic | 65.0% | |
| AGCAGGGCGTGGGGCTTGAC+CGG | + | chr3.4:85864375-85864394 | None:intergenic | 70.0% | |
| CTCCTGGTCCAGCAGGGCGT+GGG | + | chr3.4:85864385-85864404 | None:intergenic | 70.0% | |
| GGAGGAGCTCCTGGTCCAGC+AGG | + | chr3.4:85864392-85864411 | None:intergenic | 70.0% | |
| TCCTGGTCCAGCAGGGCGTG+GGG | + | chr3.4:85864384-85864403 | None:intergenic | 70.0% | |
| GCAGGGCGTGGGGCTTGACC+GGG | + | chr3.4:85864374-85864393 | None:intergenic | 75.0% | |
| GCTCCTGGTCCAGCAGGGCG+TGG | + | chr3.4:85864386-85864405 | None:intergenic | 75.0% | |
| GGTCAAGCCCCACGCCCTGC+TGG | - | chr3.4:85864374-85864393 | MS.gene059340:intron | 75.0% | |
| !! | GCACGGGCTGGAGGAGCTCC+TGG | + | chr3.4:85864401-85864420 | None:intergenic | 75.0% |
| !! | TGGGGCTTGACCGGGCTGGC+CGG | + | chr3.4:85864366-85864385 | None:intergenic | 75.0% |
| ! | GCCCCACGCCCTGCTGGACC+AGG | - | chr3.4:85864380-85864399 | MS.gene059340:intron | 80.0% |
| ! | GGCGTGGGGCTTGACCGGGC+TGG | + | chr3.4:85864370-85864389 | None:intergenic | 80.0% |
| !!! | GGGGCTTGACCGGGCTGGCC+GGG | + | chr3.4:85864365-85864384 | None:intergenic | 80.0% |
| !!! | TGACCGGGCTGGCCGGGCCT+GGG | + | chr3.4:85864359-85864378 | None:intergenic | 80.0% |
| !!! | TTGACCGGGCTGGCCGGGCC+TGG | + | chr3.4:85864360-85864379 | None:intergenic | 80.0% |
| ! | GCACCCAGGCCCGGCCAGCC+CGG | - | chr3.4:85864353-85864372 | MS.gene059340:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85862498 | 85864424 | 85862498 | ID=MS.gene059340 |
| chr3.4 | mRNA | 85862498 | 85864424 | 85862498 | ID=MS.gene059340.t1;Parent=MS.gene059340 |
| chr3.4 | exon | 85864422 | 85864424 | 85864422 | ID=MS.gene059340.t1.exon1;Parent=MS.gene059340.t1 |
| chr3.4 | CDS | 85864422 | 85864424 | 85864422 | ID=cds.MS.gene059340.t1;Parent=MS.gene059340.t1 |
| chr3.4 | exon | 85864239 | 85864331 | 85864239 | ID=MS.gene059340.t1.exon2;Parent=MS.gene059340.t1 |
| chr3.4 | CDS | 85864239 | 85864331 | 85864239 | ID=cds.MS.gene059340.t1;Parent=MS.gene059340.t1 |
| chr3.4 | exon | 85864062 | 85864146 | 85864062 | ID=MS.gene059340.t1.exon3;Parent=MS.gene059340.t1 |
| chr3.4 | CDS | 85864062 | 85864146 | 85864062 | ID=cds.MS.gene059340.t1;Parent=MS.gene059340.t1 |
| chr3.4 | exon | 85863832 | 85863965 | 85863832 | ID=MS.gene059340.t1.exon4;Parent=MS.gene059340.t1 |
| chr3.4 | CDS | 85863832 | 85863965 | 85863832 | ID=cds.MS.gene059340.t1;Parent=MS.gene059340.t1 |
| chr3.4 | exon | 85862498 | 85862575 | 85862498 | ID=MS.gene059340.t1.exon5;Parent=MS.gene059340.t1 |
| chr3.4 | CDS | 85862498 | 85862575 | 85862498 | ID=cds.MS.gene059340.t1;Parent=MS.gene059340.t1 |
| Gene Sequence |
| Protein sequence |
