Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38788.t1 | XP_003625034.1 | 94.4 | 429 | 18 | 3 | 1 | 426 | 1 | 426 | 1.10E-214 | 755.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38788.t1 | Q9FLE8 | 31.1 | 379 | 223 | 11 | 64 | 425 | 32 | 389 | 1.3e-38 | 162.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38788.t1 | A2Q2Z6 | 94.4 | 429 | 18 | 3 | 1 | 426 | 1 | 426 | 8.1e-215 | 755.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049297 | MS.gene38788 | 0.815333 | 9.76E-52 | -1.69E-46 |
MS.gene050586 | MS.gene38788 | 0.800178 | 1.63E-48 | -1.69E-46 |
MS.gene051663 | MS.gene38788 | 0.809916 | 1.49E-50 | -1.69E-46 |
MS.gene052376 | MS.gene38788 | 0.803727 | 3.04E-49 | -1.69E-46 |
MS.gene053630 | MS.gene38788 | 0.80681 | 6.86E-50 | -1.69E-46 |
MS.gene053836 | MS.gene38788 | 0.808097 | 3.66E-50 | -1.69E-46 |
MS.gene054473 | MS.gene38788 | 0.807284 | 5.45E-50 | -1.69E-46 |
MS.gene054942 | MS.gene38788 | 0.802384 | 5.75E-49 | -1.69E-46 |
MS.gene056875 | MS.gene38788 | 0.809432 | 1.90E-50 | -1.69E-46 |
MS.gene057260 | MS.gene38788 | 0.822305 | 2.54E-53 | -1.69E-46 |
MS.gene058749 | MS.gene38788 | 0.805393 | 1.36E-49 | -1.69E-46 |
MS.gene060619 | MS.gene38788 | 0.809726 | 1.64E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38788.t1 | MTR_7g090230 | 96.737 | 429 | 8 | 3 | 1 | 426 | 1 | 426 | 0.0 | 846 |
MS.gene38788.t1 | MTR_1g051180 | 53.182 | 440 | 117 | 11 | 1 | 426 | 1 | 365 | 1.42e-133 | 388 |
MS.gene38788.t1 | MTR_8g038440 | 65.806 | 155 | 51 | 1 | 273 | 425 | 101 | 255 | 1.68e-69 | 221 |
MS.gene38788.t1 | MTR_3g017490 | 63.158 | 152 | 55 | 1 | 273 | 424 | 110 | 260 | 2.99e-68 | 218 |
MS.gene38788.t1 | MTR_7g104720 | 34.184 | 392 | 209 | 12 | 75 | 425 | 22 | 405 | 3.36e-50 | 175 |
MS.gene38788.t1 | MTR_3g465550 | 47.305 | 167 | 84 | 3 | 256 | 420 | 64 | 228 | 1.56e-48 | 165 |
MS.gene38788.t1 | MTR_5g083110 | 52.229 | 157 | 72 | 3 | 268 | 424 | 85 | 238 | 5.17e-48 | 164 |
MS.gene38788.t1 | MTR_5g072400 | 40.284 | 211 | 116 | 4 | 221 | 424 | 46 | 253 | 5.66e-46 | 160 |
MS.gene38788.t1 | MTR_6g011640 | 29.224 | 438 | 191 | 15 | 64 | 425 | 3 | 397 | 5.67e-44 | 158 |
MS.gene38788.t1 | MTR_7g010090 | 31.092 | 357 | 162 | 13 | 90 | 425 | 139 | 432 | 1.63e-39 | 147 |
MS.gene38788.t1 | MTR_7g106500 | 45.000 | 160 | 78 | 2 | 274 | 425 | 122 | 279 | 5.47e-39 | 142 |
MS.gene38788.t1 | MTR_3g071510 | 43.617 | 188 | 97 | 6 | 239 | 424 | 54 | 234 | 6.12e-39 | 140 |
MS.gene38788.t1 | MTR_1g090400 | 43.709 | 151 | 82 | 2 | 274 | 424 | 221 | 368 | 1.54e-37 | 140 |
MS.gene38788.t1 | MTR_8g099665 | 39.752 | 161 | 83 | 3 | 274 | 424 | 211 | 367 | 6.41e-33 | 127 |
MS.gene38788.t1 | MTR_8g106900 | 41.667 | 156 | 85 | 4 | 274 | 424 | 119 | 273 | 2.96e-31 | 120 |
MS.gene38788.t1 | MTR_3g030520 | 39.241 | 158 | 79 | 3 | 285 | 425 | 142 | 299 | 5.87e-27 | 109 |
MS.gene38788.t1 | MTR_5g048870 | 40.230 | 87 | 50 | 1 | 279 | 363 | 70 | 156 | 5.97e-14 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38788.t1 | AT2G41330 | 50.256 | 390 | 153 | 10 | 53 | 425 | 36 | 401 | 3.00e-113 | 338 |
MS.gene38788.t1 | AT3G57070 | 48.990 | 396 | 173 | 8 | 48 | 425 | 32 | 416 | 6.29e-113 | 338 |
MS.gene38788.t1 | AT5G13810 | 64.162 | 173 | 60 | 2 | 254 | 426 | 104 | 274 | 1.63e-72 | 229 |
MS.gene38788.t1 | AT5G39865 | 32.105 | 380 | 218 | 13 | 64 | 425 | 32 | 389 | 1.29e-48 | 170 |
MS.gene38788.t1 | AT5G58530 | 47.500 | 160 | 74 | 3 | 273 | 424 | 108 | 265 | 5.35e-44 | 155 |
MS.gene38788.t1 | AT5G03870 | 31.620 | 389 | 196 | 14 | 76 | 424 | 25 | 383 | 4.02e-40 | 147 |
MS.gene38788.t1 | AT5G06470 | 42.405 | 158 | 80 | 3 | 274 | 424 | 85 | 238 | 1.42e-37 | 137 |
MS.gene38788.t1 | AT3G28850 | 42.045 | 176 | 73 | 3 | 279 | 425 | 252 | 427 | 4.16e-37 | 140 |
MS.gene38788.t1 | AT4G10630 | 31.165 | 369 | 173 | 14 | 75 | 424 | 27 | 333 | 4.43e-37 | 138 |
MS.gene38788.t1 | AT1G64500 | 42.405 | 158 | 84 | 2 | 274 | 424 | 208 | 365 | 2.40e-36 | 137 |
MS.gene38788.t1 | AT1G32760 | 42.197 | 173 | 92 | 4 | 258 | 424 | 143 | 313 | 7.09e-34 | 129 |
MS.gene38788.t1 | AT3G11773 | 42.857 | 140 | 76 | 3 | 285 | 424 | 14 | 149 | 2.47e-33 | 122 |
MS.gene38788.t1 | AT5G01420 | 38.816 | 152 | 89 | 3 | 274 | 424 | 252 | 400 | 2.24e-30 | 121 |
MS.gene38788.t1 | AT3G11773 | 41.071 | 112 | 62 | 3 | 313 | 424 | 92 | 199 | 1.11e-22 | 95.5 |
Find 55 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGTTTCTGTTAGCAACTA+TGG | 0.271791 | 7.1:-17127358 | None:intergenic |
TTTCAATGGATTCATCTTAT+AGG | 0.287479 | 7.1:+17128276 | MS.gene38788:CDS |
TGTGTTCATTGTAATGAAAA+TGG | 0.321593 | 7.1:+17128557 | MS.gene38788:CDS |
TGATCATGAGGGGTAAAGTT+AGG | 0.340853 | 7.1:-17127615 | None:intergenic |
TTGAAACAATTGAATGAATC+TGG | 0.363003 | 7.1:+17128389 | MS.gene38788:CDS |
AGAAGCTTTGCTTGCTAAGT+TGG | 0.365047 | 7.1:+17127968 | MS.gene38788:CDS |
TGTTTATCTGAGAAACTCAT+TGG | 0.370099 | 7.1:-17127789 | None:intergenic |
AAAGAAGAACAAGGATTCAT+AGG | 0.402640 | 7.1:-17128101 | None:intergenic |
GATGAATAAGAGGCATTGTA+AGG | 0.415383 | 7.1:-17127503 | None:intergenic |
AAAGAAACAGAAGGTGTTGT+TGG | 0.422488 | 7.1:-17127387 | None:intergenic |
TTTCAGATGTGTAAGGTCAA+TGG | 0.435956 | 7.1:+17128070 | MS.gene38788:CDS |
TCACTCACTTCCACTACCTA+TGG | 0.439023 | 7.1:+17127564 | MS.gene38788:CDS |
GTGAGATGGGGTTGATCATG+AGG | 0.444128 | 7.1:-17127627 | None:intergenic |
GTTGGAGGGTGATGAATAAG+AGG | 0.449999 | 7.1:-17127513 | None:intergenic |
GTAATAATTGCAATGGTAGC+AGG | 0.462789 | 7.1:+17128498 | MS.gene38788:CDS |
CTGTAACTCCAAGCAACACT+TGG | 0.466501 | 7.1:-17127993 | None:intergenic |
AAGAACAAGGTAAATTGAAA+AGG | 0.483693 | 7.1:+17128534 | MS.gene38788:CDS |
CATCAACACTTGGGAACTCA+TGG | 0.487477 | 7.1:+17127695 | MS.gene38788:CDS |
AGTTGGATCCAAGTGTTGCT+TGG | 0.490779 | 7.1:+17127985 | MS.gene38788:CDS |
CTACCATTGCAATTATTACA+AGG | 0.490905 | 7.1:-17128494 | None:intergenic |
CAAGTGTTGATGACAGAATC+TGG | 0.492141 | 7.1:-17127684 | None:intergenic |
CAGATTCTGTCATCAACACT+TGG | 0.496185 | 7.1:+17127685 | MS.gene38788:CDS |
TTGACCTTACACATCTGAAA+AGG | 0.497664 | 7.1:-17128067 | None:intergenic |
GAGAAGAGAACCATAGGTAG+TGG | 0.505781 | 7.1:-17127574 | None:intergenic |
GATCATGAGGGGTAAAGTTA+GGG | 0.512539 | 7.1:-17127614 | None:intergenic |
TGGTAGCAGGAAAGTGTTTG+AGG | 0.513533 | 7.1:+17128511 | MS.gene38788:CDS |
AATGGATTCATCTTATAGGA+AGG | 0.527593 | 7.1:+17128280 | MS.gene38788:CDS |
TGAGATGGGGTTGATCATGA+GGG | 0.532269 | 7.1:-17127626 | None:intergenic |
TGATGAAAGAGATATTTCAA+TGG | 0.533526 | 7.1:+17128262 | MS.gene38788:CDS |
AATTAGGAGAAGAGAACCAT+AGG | 0.536814 | 7.1:-17127580 | None:intergenic |
ATCAGTAGTGACATTGCCAC+AGG | 0.554763 | 7.1:+17128328 | MS.gene38788:CDS |
AAAATCTCAAGAAACCACTT+TGG | 0.555258 | 7.1:+17127931 | MS.gene38788:CDS |
GAAGATTGAAAAGAAACAGA+AGG | 0.555642 | 7.1:-17127396 | None:intergenic |
AAGGAGTTGCAGAATGCACT+TGG | 0.559200 | 7.1:+17128299 | MS.gene38788:CDS |
TCTGATAAATGCTGCCAAAG+TGG | 0.561325 | 7.1:-17127945 | None:intergenic |
TAGTGGAAGTGAGTGAAACA+AGG | 0.572068 | 7.1:-17127557 | None:intergenic |
ACAAACCAAGGATCTTGAGT+TGG | 0.577028 | 7.1:-17128440 | None:intergenic |
CAGATAAACACAGTTCATGC+AGG | 0.580945 | 7.1:+17127802 | MS.gene38788:CDS |
GAGTTGCAGAATGCACTTGG+TGG | 0.581868 | 7.1:+17128302 | MS.gene38788:CDS |
GAATTAGCTAGAATGTTGAA+AGG | 0.590447 | 7.1:+17128413 | MS.gene38788:CDS |
AACACTTGGGAACTCATGGA+TGG | 0.595857 | 7.1:+17127699 | MS.gene38788:CDS |
TGGTTTGTTTGTGACAAATG+TGG | 0.596999 | 7.1:+17128455 | MS.gene38788:CDS |
TTTATCAGAGGGAAGCATGT+GGG | 0.599499 | 7.1:+17128353 | MS.gene38788:CDS |
GAAAGCTTCAGAAACAGTGA+TGG | 0.616398 | 7.1:+17127881 | MS.gene38788:CDS |
GTGCCTTGTAATAATTGCAA+TGG | 0.616885 | 7.1:+17128491 | MS.gene38788:CDS |
ATGAATAAGAGGCATTGTAA+GGG | 0.620378 | 7.1:-17127502 | None:intergenic |
GCATTGTCATCAAGACAACT+AGG | 0.624676 | 7.1:+17128020 | MS.gene38788:CDS |
GTTTATTGCACAAGTTTGCG+AGG | 0.649260 | 7.1:+17128173 | MS.gene38788:CDS |
AGATTCTGTCATCAACACTT+GGG | 0.657274 | 7.1:+17127686 | MS.gene38788:CDS |
CATTTGTCACAAACAAACCA+AGG | 0.669189 | 7.1:-17128452 | None:intergenic |
TTATCAAACAAAGAAGAACA+AGG | 0.689315 | 7.1:-17128110 | None:intergenic |
GAGATGGGGTTGATCATGAG+GGG | 0.692266 | 7.1:-17127625 | None:intergenic |
ATGAAGATTGTTGTGCAGTG+AGG | 0.704749 | 7.1:+17128210 | MS.gene38788:CDS |
AAAGTGTTTGAGGAAGAACA+AGG | 0.708450 | 7.1:+17128521 | MS.gene38788:CDS |
TTGTCATCAAGACAACTAGG+TGG | 0.763609 | 7.1:+17128023 | MS.gene38788:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAGAACAAGGTAAATTGAAA+AGG | + | chr7.1:17128534-17128553 | MS.gene38788:CDS | 25.0% |
! | TGATGAAAGAGATATTTCAA+TGG | + | chr7.1:17128262-17128281 | MS.gene38788:CDS | 25.0% |
! | TGTGTTCATTGTAATGAAAA+TGG | + | chr7.1:17128557-17128576 | MS.gene38788:CDS | 25.0% |
! | TTATCAAACAAAGAAGAACA+AGG | - | chr7.1:17128113-17128132 | None:intergenic | 25.0% |
! | TTGAAACAATTGAATGAATC+TGG | + | chr7.1:17128389-17128408 | MS.gene38788:CDS | 25.0% |
!! | TTTCAATGGATTCATCTTAT+AGG | + | chr7.1:17128276-17128295 | MS.gene38788:CDS | 25.0% |
!!! | TGGTTTCTTGAGATTTTTTT+TGG | - | chr7.1:17127928-17127947 | None:intergenic | 25.0% |
!!! | TTCTTCATTTTGAGAAGTTT+TGG | - | chr7.1:17127652-17127671 | None:intergenic | 25.0% |
AAAATCTCAAGAAACCACTT+TGG | + | chr7.1:17127931-17127950 | MS.gene38788:CDS | 30.0% | |
AAAGAAGAACAAGGATTCAT+AGG | - | chr7.1:17128104-17128123 | None:intergenic | 30.0% | |
ACTCATTGGATTGTCAAAAA+AGG | - | chr7.1:17127778-17127797 | None:intergenic | 30.0% | |
ATTGGATTGTCAAAAAAGGA+AGG | - | chr7.1:17127774-17127793 | None:intergenic | 30.0% | |
CTACCATTGCAATTATTACA+AGG | - | chr7.1:17128497-17128516 | None:intergenic | 30.0% | |
GAAGATTGAAAAGAAACAGA+AGG | - | chr7.1:17127399-17127418 | None:intergenic | 30.0% | |
GAATTAGCTAGAATGTTGAA+AGG | + | chr7.1:17128413-17128432 | MS.gene38788:CDS | 30.0% | |
TGTTTATCTGAGAAACTCAT+TGG | - | chr7.1:17127792-17127811 | None:intergenic | 30.0% | |
! | AATGGATTCATCTTATAGGA+AGG | + | chr7.1:17128280-17128299 | MS.gene38788:CDS | 30.0% |
!! | ATGAATAAGAGGCATTGTAA+GGG | - | chr7.1:17127505-17127524 | None:intergenic | 30.0% |
!!! | AACTATGGTTGTTGTTTTTG+AGG | - | chr7.1:17127346-17127365 | None:intergenic | 30.0% |
AATTAGGAGAAGAGAACCAT+AGG | - | chr7.1:17127583-17127602 | None:intergenic | 35.0% | |
AGATTCTGTCATCAACACTT+GGG | + | chr7.1:17127686-17127705 | MS.gene38788:CDS | 35.0% | |
CATTTGTCACAAACAAACCA+AGG | - | chr7.1:17128455-17128474 | None:intergenic | 35.0% | |
GTAATAATTGCAATGGTAGC+AGG | + | chr7.1:17128498-17128517 | MS.gene38788:CDS | 35.0% | |
GTGCCTTGTAATAATTGCAA+TGG | + | chr7.1:17128491-17128510 | MS.gene38788:CDS | 35.0% | |
TTGACCTTACACATCTGAAA+AGG | - | chr7.1:17128070-17128089 | None:intergenic | 35.0% | |
TTTCAGATGTGTAAGGTCAA+TGG | + | chr7.1:17128070-17128089 | MS.gene38788:CDS | 35.0% | |
! | AAAGTGTTTGAGGAAGAACA+AGG | + | chr7.1:17128521-17128540 | MS.gene38788:CDS | 35.0% |
! | AAGAGTTTGTGTCTTTTACC+TGG | + | chr7.1:17128131-17128150 | MS.gene38788:CDS | 35.0% |
! | ACTATTCTGTTTTCAGTACC+AGG | - | chr7.1:17128152-17128171 | None:intergenic | 35.0% |
! | AGAACCTTTTCAGATGTGTA+AGG | + | chr7.1:17128063-17128082 | MS.gene38788:CDS | 35.0% |
! | TGTGTTTCTGTTAGCAACTA+TGG | - | chr7.1:17127361-17127380 | None:intergenic | 35.0% |
!! | AAAGAAACAGAAGGTGTTGT+TGG | - | chr7.1:17127390-17127409 | None:intergenic | 35.0% |
!! | GATGAATAAGAGGCATTGTA+AGG | - | chr7.1:17127506-17127525 | None:intergenic | 35.0% |
!! | TAGGGACTTTTTGGTCAATT+AGG | - | chr7.1:17127599-17127618 | None:intergenic | 35.0% |
!! | TGGTTTGTTTGTGACAAATG+TGG | + | chr7.1:17128455-17128474 | MS.gene38788:CDS | 35.0% |
!! | TTGAGAAGTTTTGGTGAGAT+GGG | - | chr7.1:17127643-17127662 | None:intergenic | 35.0% |
!! | TTTGAGAAGTTTTGGTGAGA+TGG | - | chr7.1:17127644-17127663 | None:intergenic | 35.0% |
ACAAACCAAGGATCTTGAGT+TGG | - | chr7.1:17128443-17128462 | None:intergenic | 40.0% | |
ATGAAGATTGTTGTGCAGTG+AGG | + | chr7.1:17128210-17128229 | MS.gene38788:CDS | 40.0% | |
CAGATAAACACAGTTCATGC+AGG | + | chr7.1:17127802-17127821 | MS.gene38788:CDS | 40.0% | |
CAGATTCTGTCATCAACACT+TGG | + | chr7.1:17127685-17127704 | MS.gene38788:CDS | 40.0% | |
GAAAGCTTCAGAAACAGTGA+TGG | + | chr7.1:17127881-17127900 | MS.gene38788:CDS | 40.0% | |
GATCATGAGGGGTAAAGTTA+GGG | - | chr7.1:17127617-17127636 | None:intergenic | 40.0% | |
GCATTGTCATCAAGACAACT+AGG | + | chr7.1:17128020-17128039 | MS.gene38788:CDS | 40.0% | |
GTTTATTGCACAAGTTTGCG+AGG | + | chr7.1:17128173-17128192 | MS.gene38788:CDS | 40.0% | |
TAGTGGAAGTGAGTGAAACA+AGG | - | chr7.1:17127560-17127579 | None:intergenic | 40.0% | |
TCTGATAAATGCTGCCAAAG+TGG | - | chr7.1:17127948-17127967 | None:intergenic | 40.0% | |
TGATCATGAGGGGTAAAGTT+AGG | - | chr7.1:17127618-17127637 | None:intergenic | 40.0% | |
TTCCCTCTGATAAAAACCTG+TGG | - | chr7.1:17128347-17128366 | None:intergenic | 40.0% | |
TTGTCATCAAGACAACTAGG+TGG | + | chr7.1:17128023-17128042 | MS.gene38788:CDS | 40.0% | |
! | AGAAGCTTTGCTTGCTAAGT+TGG | + | chr7.1:17127968-17127987 | MS.gene38788:CDS | 40.0% |
! | AGGGACAAAGCTTTTCTAAC+TGG | - | chr7.1:17127486-17127505 | None:intergenic | 40.0% |
! | GACAAAGCTTTTCTAACTGG+TGG | - | chr7.1:17127483-17127502 | None:intergenic | 40.0% |
! | GGGTAAAGTTAGGGACTTTT+TGG | - | chr7.1:17127608-17127627 | None:intergenic | 40.0% |
! | GTTTTCCAACTCAAGATCCT+TGG | + | chr7.1:17128435-17128454 | MS.gene38788:CDS | 40.0% |
! | TGCAGGTACACAACTTTTGA+TGG | + | chr7.1:17127819-17127838 | MS.gene38788:CDS | 40.0% |
! | TGCAGTGAGGATGATTTTGA+GGG | + | chr7.1:17128223-17128242 | MS.gene38788:CDS | 40.0% |
! | TGCCACAGGTTTTTATCAGA+GGG | + | chr7.1:17128342-17128361 | MS.gene38788:CDS | 40.0% |
! | TTGCCACAGGTTTTTATCAG+AGG | + | chr7.1:17128341-17128360 | MS.gene38788:CDS | 40.0% |
! | TTTATCAGAGGGAAGCATGT+GGG | + | chr7.1:17128353-17128372 | MS.gene38788:CDS | 40.0% |
!! | CAAGTGTTGATGACAGAATC+TGG | - | chr7.1:17127687-17127706 | None:intergenic | 40.0% |
!! | TGAGAAGTTTTGGTGAGATG+GGG | - | chr7.1:17127642-17127661 | None:intergenic | 40.0% |
!! | TTTTATCAGAGGGAAGCATG+TGG | + | chr7.1:17128352-17128371 | MS.gene38788:CDS | 40.0% |
!!! | GTGATGAGTGTCACCTTTTT+TGG | - | chr7.1:17127538-17127557 | None:intergenic | 40.0% |
!!! | TGAGTGTCACCTTTTTTGGT+TGG | - | chr7.1:17127534-17127553 | None:intergenic | 40.0% |
!!! | TGTCACCTTTTTTGGTTGGA+GGG | - | chr7.1:17127530-17127549 | None:intergenic | 40.0% |
AACACTTGGGAACTCATGGA+TGG | + | chr7.1:17127699-17127718 | MS.gene38788:CDS | 45.0% | |
AAGGAGTTGCAGAATGCACT+TGG | + | chr7.1:17128299-17128318 | MS.gene38788:CDS | 45.0% | |
ATCAGTAGTGACATTGCCAC+AGG | + | chr7.1:17128328-17128347 | MS.gene38788:CDS | 45.0% | |
CATCAACACTTGGGAACTCA+TGG | + | chr7.1:17127695-17127714 | MS.gene38788:CDS | 45.0% | |
CATCACCCTCCAACCAAAAA+AGG | + | chr7.1:17127522-17127541 | MS.gene38788:CDS | 45.0% | |
CTGTAACTCCAAGCAACACT+TGG | - | chr7.1:17127996-17128015 | None:intergenic | 45.0% | |
GAGAAGAGAACCATAGGTAG+TGG | - | chr7.1:17127577-17127596 | None:intergenic | 45.0% | |
GTTGGAGGGTGATGAATAAG+AGG | - | chr7.1:17127516-17127535 | None:intergenic | 45.0% | |
TCACTCACTTCCACTACCTA+TGG | + | chr7.1:17127564-17127583 | MS.gene38788:CDS | 45.0% | |
! | AGTTGGATCCAAGTGTTGCT+TGG | + | chr7.1:17127985-17128004 | MS.gene38788:CDS | 45.0% |
! | GCAGTGAGGATGATTTTGAG+GGG | + | chr7.1:17128224-17128243 | MS.gene38788:CDS | 45.0% |
! | GTGCAGTGAGGATGATTTTG+AGG | + | chr7.1:17128222-17128241 | MS.gene38788:CDS | 45.0% |
! | TGAGATGGGGTTGATCATGA+GGG | - | chr7.1:17127629-17127648 | None:intergenic | 45.0% |
!! | TGGTAGCAGGAAAGTGTTTG+AGG | + | chr7.1:17128511-17128530 | MS.gene38788:CDS | 45.0% |
!!! | GTGTCACCTTTTTTGGTTGG+AGG | - | chr7.1:17127531-17127550 | None:intergenic | 45.0% |
GAGTTGCAGAATGCACTTGG+TGG | + | chr7.1:17128302-17128321 | MS.gene38788:CDS | 50.0% | |
! | GAGATGGGGTTGATCATGAG+GGG | - | chr7.1:17127628-17127647 | None:intergenic | 50.0% |
! | GTGAGATGGGGTTGATCATG+AGG | - | chr7.1:17127630-17127649 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 17127330 | 17128610 | 17127330 | ID=MS.gene38788 |
chr7.1 | mRNA | 17127330 | 17128610 | 17127330 | ID=MS.gene38788.t1;Parent=MS.gene38788 |
chr7.1 | exon | 17127330 | 17128610 | 17127330 | ID=MS.gene38788.t1.exon1;Parent=MS.gene38788.t1 |
chr7.1 | CDS | 17127330 | 17128610 | 17127330 | ID=cds.MS.gene38788.t1;Parent=MS.gene38788.t1 |
Gene Sequence |
Protein sequence |