AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056875


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056875.t1 MTR_1g060010 97.257 401 11 0 1 401 84 484 0.0 785
MS.gene056875.t1 MTR_7g104500 84.864 403 53 4 1 400 96 493 0.0 619
MS.gene056875.t1 MTR_7g104500 86.464 362 44 2 1 359 96 455 0.0 565
MS.gene056875.t1 MTR_3g055590 57.612 335 134 2 13 347 35 361 7.15e-112 334
MS.gene056875.t1 MTR_5g094120 58.163 294 121 1 54 347 74 365 5.78e-111 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056875.t1 AT3G52750 82.262 389 64 2 13 401 90 473 0.0 604
MS.gene056875.t1 AT3G52750 82.262 389 64 2 13 401 90 473 0.0 604
MS.gene056875.t1 AT3G52750 82.262 389 64 2 13 401 90 473 0.0 604
MS.gene056875.t1 AT2G36250 80.645 403 70 5 1 401 82 478 0.0 601
MS.gene056875.t1 AT2G36250 80.645 403 70 5 1 401 82 478 0.0 601
MS.gene056875.t1 AT2G36250 80.645 403 70 5 1 401 82 478 0.0 601
MS.gene056875.t1 AT2G36250 80.645 403 70 5 1 401 1 397 0.0 600
MS.gene056875.t1 AT3G52750 83.858 254 39 1 13 266 90 341 7.84e-136 392
MS.gene056875.t1 AT5G55280 56.395 344 146 2 6 347 38 379 1.15e-109 329

Find 105 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTCCTTCAAATGAAAA+AGG 0.157995 1.1:+45714276 None:intergenic
TCGATTGAAGAGGCGGTTTA+TGG 0.213081 1.1:-45715794 MS.gene056875:CDS
CAGTCTCCTTTACTGGATAT+TGG 0.228609 1.1:-45713643 MS.gene056875:CDS
TGCTATTCAGTCTCCTTTAC+TGG 0.257008 1.1:-45713650 MS.gene056875:CDS
AGATTGAATGCTTCCGTTAC+AGG 0.277515 1.1:+45714147 None:intergenic
CGATGCACGGAGTTGAGTTT+TGG 0.280389 1.1:-45715961 MS.gene056875:CDS
CAGGCGAAGATTAAAGTTAT+TGG 0.295298 1.1:-45716031 MS.gene056875:CDS
TGCTGATATTCGAGCTATAA+TGG 0.295573 1.1:-45713944 MS.gene056875:CDS
GAGAAAGGGCAGTTCTAGTT+TGG 0.303814 1.1:-45716107 MS.gene056875:CDS
CCTTTCTTCTTTAAGAAATC+AGG 0.304694 1.1:+45711484 None:intergenic
GTAATAGATCCTTCACTTAC+TGG 0.318596 1.1:-45712527 MS.gene056875:CDS
GCTGGAATGGGTGGTGGAAC+CGG 0.337874 1.1:-45714372 MS.gene056875:CDS
GCAGTTAATAGCTTGTCATT+TGG 0.353188 1.1:+45714186 None:intergenic
CCCGAGGTTTCGATGCTTAG+AGG 0.362587 1.1:-45716157 None:intergenic
GCAGCATTCATTCCCATCTC+AGG 0.363659 1.1:+45715833 None:intergenic
TTGGAACTTACGCGAGGTCT+TGG 0.365517 1.1:-45715869 MS.gene056875:CDS
AATTCCTTCTTGTGCTTGAA+TGG 0.366217 1.1:+45714248 None:intergenic
GTTATTGGTGTGGGAGGTGG+TGG 0.408049 1.1:-45716016 MS.gene056875:CDS
AGCATAACATTAATTGCAAC+CGG 0.408343 1.1:-45711714 MS.gene056875:CDS
CAATGCTGGTTCTTCACTGA+TGG 0.410946 1.1:-45713920 MS.gene056875:CDS
GAACCGTCTGCAGATTGGTT+TGG 0.412737 1.1:-45715888 MS.gene056875:CDS
GGCGGTTTATGGAGCTGATA+TGG 0.416466 1.1:-45715783 MS.gene056875:CDS
TGCTGATGATATTCTTCGAC+AGG 0.422970 1.1:-45714124 MS.gene056875:CDS
TTCCTCTTGACGCTTGAATC+CGG 0.423864 1.1:+45711695 None:intergenic
ATGGGTGGTGGAACCGGCAC+AGG 0.425036 1.1:-45714366 MS.gene056875:CDS
AAACTAGAACTGCCCTTTCT+CGG 0.425268 1.1:+45716109 None:intergenic
ACTTACTGAGTGCAGATCCC+TGG 0.436250 1.1:-45713985 MS.gene056875:intron
AGAAAGGGCAGTTCTAGTTT+GGG 0.436746 1.1:-45716106 MS.gene056875:CDS
CCTGATTTCTTAAAGAAGAA+AGG 0.436829 1.1:-45711484 MS.gene056875:CDS
GAGTGATCTGACTTTGTTTG+AGG 0.444135 1.1:-45713578 MS.gene056875:intron
AAAGTTATTGGTGTGGGAGG+TGG 0.445941 1.1:-45716019 MS.gene056875:CDS
CCAATCTGCAGACGGTTCTC+AGG 0.448678 1.1:+45715893 None:intergenic
ATTCTTCGACAGGGCGTTCG+TGG 0.450765 1.1:-45714114 MS.gene056875:CDS
GGAATTGTGTGGAACATAAC+TGG 0.451299 1.1:-45713604 MS.gene056875:CDS
GGTGGTGCTCCGATTATTGC+TGG 0.461113 1.1:-45714345 MS.gene056875:CDS
TTTGCAACACCAGCAATAAT+CGG 0.461666 1.1:+45714336 None:intergenic
AAGGACGCTCACGCTATCCT+AGG 0.463769 1.1:-45711465 MS.gene056875:CDS
ATTGGTATAGAGAGGGCTAC+TGG 0.466303 1.1:-45713625 MS.gene056875:CDS
CACGGTGAATGTTCCGAGAA+AGG 0.470521 1.1:-45716122 MS.gene056875:CDS
CCTTCCTCGTTCTCTGATGA+TGG 0.472648 1.1:-45711523 MS.gene056875:CDS
CAATGGGTATACTGACTGTT+GGG 0.476043 1.1:-45714311 MS.gene056875:CDS
AATGCTGGTTCTTCACTGAT+GGG 0.476321 1.1:-45713919 MS.gene056875:CDS
GGATTTATCCGAGAGCTTAG+AGG 0.477876 1.1:-45716080 MS.gene056875:CDS
CCTGAGAACCGTCTGCAGAT+TGG 0.481006 1.1:-45715893 MS.gene056875:CDS
AAATCAACATTTACCATCCC+AGG 0.484005 1.1:+45713967 None:intergenic
TGCTGGTGTTGCAAAGTCAA+TGG 0.486003 1.1:-45714328 MS.gene056875:CDS
GATTGAATGCTTCCGTTACA+GGG 0.488232 1.1:+45714148 None:intergenic
ATGGGGATAGGAACTGCAAC+TGG 0.490129 1.1:-45713901 MS.gene056875:intron
ACGGTGAATGTTCCGAGAAA+GGG 0.497100 1.1:-45716121 MS.gene056875:CDS
CTTACTGAGTGCAGATCCCT+GGG 0.499177 1.1:-45713984 MS.gene056875:intron
TTGCAGGCTGGAATGGGTGG+TGG 0.508649 1.1:-45714378 MS.gene056875:intron
AAGATTAAAGTTATTGGTGT+GGG 0.518785 1.1:-45716025 MS.gene056875:CDS
AATCGGAGCACCACCTGTGC+CGG 0.521073 1.1:+45714353 None:intergenic
GGTGGTGGAACCGGCACAGG+TGG 0.528595 1.1:-45714363 MS.gene056875:CDS
TCTATACCAATATCCAGTAA+AGG 0.530736 1.1:+45713637 None:intergenic
GGGCAGTTCTAGTTTGGGTG+AGG 0.532728 1.1:-45716101 MS.gene056875:CDS
TCAATGGGTATACTGACTGT+TGG 0.536448 1.1:-45714312 MS.gene056875:CDS
TGTGTGTTCAAGGGAAAACA+AGG 0.539311 1.1:-45713693 MS.gene056875:intron
CAGCATTCATTCCCATCTCA+GGG 0.540119 1.1:+45715834 None:intergenic
CGAGCTATAATGGCCAATGC+TGG 0.546952 1.1:-45713934 MS.gene056875:CDS
TAGTGAGAGTAATTACAGTC+AGG 0.547542 1.1:-45716050 MS.gene056875:CDS
TACTGGATATTGGTATAGAG+AGG 0.547814 1.1:-45713633 MS.gene056875:CDS
ATTAAAGTTATTGGTGTGGG+AGG 0.547943 1.1:-45716022 MS.gene056875:CDS
CAGAGAGTCGATTGAAGAGG+CGG 0.548139 1.1:-45715801 MS.gene056875:CDS
GGTTCTTCACTGATGGGGAT+AGG 0.549568 1.1:-45713913 MS.gene056875:CDS
CATCAGTGAAGAACCAGCAT+TGG 0.554126 1.1:+45713921 None:intergenic
GATTTGAATTATACCTGTAG+TGG 0.554427 1.1:+45711660 None:intergenic
GCAGAAGAGTATTAAACCCT+AGG 0.555930 1.1:+45711448 None:intergenic
ACAGACTAGTCAGCTCACTC+AGG 0.564624 1.1:-45711575 MS.gene056875:intron
GCTGGTGTTGCAAAGTCAAT+GGG 0.565632 1.1:-45714327 MS.gene056875:CDS
AGATATATCCTCTAAGCTCT+CGG 0.568987 1.1:+45716072 None:intergenic
TTCTCAATCTACCCCTGTAA+CGG 0.573127 1.1:-45714160 MS.gene056875:CDS
AGATCCATTCAAGCACAAGA+AGG 0.582161 1.1:-45714252 MS.gene056875:CDS
CTTACGCGAGGTCTTGGAGC+TGG 0.582616 1.1:-45715863 MS.gene056875:CDS
ACATGAAGAGAAGCCACTAC+AGG 0.584372 1.1:-45711673 MS.gene056875:intron
AGGACGCTCACGCTATCCTA+GGG 0.592290 1.1:-45711464 MS.gene056875:CDS
ACTGGATATTGGTATAGAGA+GGG 0.593490 1.1:-45713632 MS.gene056875:CDS
GAAGATTAAAGTTATTGGTG+TGG 0.599068 1.1:-45716026 MS.gene056875:CDS
AGCTGGTGGTAACCCTGAGA+TGG 0.605521 1.1:-45715846 MS.gene056875:CDS
AAGCAGAGAGTCGATTGAAG+AGG 0.606090 1.1:-45715804 MS.gene056875:CDS
ACGCGAGGTCTTGGAGCTGG+TGG 0.612340 1.1:-45715860 MS.gene056875:CDS
TAGAGGTGAGGCGAGTAGCA+CGG 0.614398 1.1:-45716140 MS.gene056875:CDS
CTGAGTGCAGATCCCTGGGA+TGG 0.627247 1.1:-45713980 MS.gene056875:intron
ATGCTGGTTCTTCACTGATG+GGG 0.629953 1.1:-45713918 MS.gene056875:CDS
CCATCATCAGAGAACGAGGA+AGG 0.634743 1.1:+45711523 None:intergenic
GGTTTCGATGCTTAGAGGTG+AGG 0.639410 1.1:-45716152 None:intergenic
GCTGGTGGTAACCCTGAGAT+GGG 0.642398 1.1:-45715845 MS.gene056875:CDS
AACCGGATTCAAGCGTCAAG+AGG 0.644965 1.1:-45711697 MS.gene056875:CDS
ATGATAGAGAGTTCGATGCA+CGG 0.654697 1.1:-45715974 MS.gene056875:CDS
AATCAACATTTACCATCCCA+GGG 0.657201 1.1:+45713968 None:intergenic
CTTACATGACCAGTAAGTGA+AGG 0.661515 1.1:+45712518 None:intergenic
ATTGAATGCTTCCGTTACAG+GGG 0.665540 1.1:+45714149 None:intergenic
CAGACTAGTCAGCTCACTCA+GGG 0.667175 1.1:-45711574 MS.gene056875:CDS
GCTGATGATATTCTTCGACA+GGG 0.667848 1.1:-45714123 MS.gene056875:CDS
GTGTGTTCAAGGGAAAACAA+GGG 0.669673 1.1:-45713692 MS.gene056875:intron
AGAGGGCTACTGGAATTGTG+TGG 0.670337 1.1:-45713615 MS.gene056875:CDS
GGGAGGTGGTGGATCTAACG+CGG 0.675707 1.1:-45716005 MS.gene056875:CDS
AGAAGTTATCTACGACCTCG+TGG 0.681487 1.1:-45712579 MS.gene056875:CDS
GTTCCAAACCAATCTGCAGA+CGG 0.682388 1.1:+45715885 None:intergenic
TTGTGTGGAACATAACTGGT+GGG 0.692106 1.1:-45713600 MS.gene056875:CDS
ACTACCATCATCAGAGAACG+AGG 0.692979 1.1:+45711519 None:intergenic
AGACGGTTCTCAGGAAACAC+AGG 0.693113 1.1:+45715902 None:intergenic
ATTGGTTTGGAACTTACGCG+AGG 0.698954 1.1:-45715875 MS.gene056875:CDS
AATTAGCACTAGGGTCCACG+AGG 0.745457 1.1:+45712564 None:intergenic
ATTGTGTGGAACATAACTGG+TGG 0.767709 1.1:-45713601 MS.gene056875:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATTAATTATTCAATTAA+AGG - chr1.1:45714347-45714366 MS.gene056875:CDS 10.0%
!! TACAAAATTATAAAAGAAAA+TGG - chr1.1:45712930-45712949 MS.gene056875:intron 10.0%
!! TACTCTAATAAATATTAAAA+TGG - chr1.1:45714440-45714459 MS.gene056875:intron 10.0%
!!! ATTGAATTATATTTTACATT+AGG - chr1.1:45711894-45711913 MS.gene056875:intron 10.0%
!! AAATATTAGTATATGTGTTA+GGG - chr1.1:45711969-45711988 MS.gene056875:intron 15.0%
!! AATCATTTATGAATTTCTTA+TGG + chr1.1:45715321-45715340 None:intergenic 15.0%
!! AATTCATAAATGATTTGAAA+TGG - chr1.1:45715326-45715345 MS.gene056875:intron 15.0%
!! ACTAATTGCAATATAAAATA+TGG + chr1.1:45714756-45714775 None:intergenic 15.0%
!! ATTAATTATTCAATTAAAGG+AGG - chr1.1:45714350-45714369 MS.gene056875:CDS 15.0%
!! CAATCAAGATTAAATAAAAT+AGG - chr1.1:45714416-45714435 MS.gene056875:intron 15.0%
!! TCATTTGATGAATATATAAT+CGG - chr1.1:45715635-45715654 MS.gene056875:intron 15.0%
!!! AACACAAGATAATATTTTTT+TGG + chr1.1:45713061-45713080 None:intergenic 15.0%
!!! TCATTTTAATTTTCAAGTTT+AGG + chr1.1:45713202-45713221 None:intergenic 15.0%
!!! TCCAAATTTTGAAAAATTTA+GGG + chr1.1:45713131-45713150 None:intergenic 15.0%
!!! TTCAGTTTTCATTTTTTAAA+GGG - chr1.1:45712562-45712581 MS.gene056875:CDS 15.0%
!!! TTCCAAATTTTGAAAAATTT+AGG + chr1.1:45713132-45713151 None:intergenic 15.0%
!!! TTTCAGTTTTCATTTTTTAA+AGG - chr1.1:45712561-45712580 MS.gene056875:CDS 15.0%
!!! TTTTGAACTTCATATATTAT+TGG - chr1.1:45713867-45713886 MS.gene056875:intron 15.0%
!! AAAAACTATTGCATACAAAA+GGG + chr1.1:45714974-45714993 None:intergenic 20.0%
!! AATACAAATTTGGTTATTTG+TGG - chr1.1:45712413-45712432 MS.gene056875:intron 20.0%
!! AATTATAAAAGAAAATGGTG+AGG - chr1.1:45712935-45712954 MS.gene056875:intron 20.0%
!! AGAAACATTTAAAGAAATCA+AGG + chr1.1:45714386-45714405 None:intergenic 20.0%
!! AGATTCAAATTTAATAGTCA+AGG + chr1.1:45714225-45714244 None:intergenic 20.0%
!! ATAAAATAAGTCAATGTTTG+AGG + chr1.1:45712003-45712022 None:intergenic 20.0%
!! CAAAAATTAAATTAGCACTA+GGG + chr1.1:45715052-45715071 None:intergenic 20.0%
!! CAAATATTAGTATATGTGTT+AGG - chr1.1:45711968-45711987 MS.gene056875:intron 20.0%
!! CTATATTAAATCAAATGACA+TGG + chr1.1:45715867-45715886 None:intergenic 20.0%
!! GATTCAAATTTAATAGTCAA+GGG + chr1.1:45714224-45714243 None:intergenic 20.0%
!! GTAAAAAAGATTTACATTGT+CGG - chr1.1:45715797-45715816 MS.gene056875:CDS 20.0%
!! TAAAAAAACAACAAAGAGAT+GGG + chr1.1:45714124-45714143 None:intergenic 20.0%
!! TAAAAACTATTGCATACAAA+AGG + chr1.1:45714975-45714994 None:intergenic 20.0%
!! TAAAATAAGTCAATGTTTGA+GGG + chr1.1:45712002-45712021 None:intergenic 20.0%
!! TAAATTGCACAATTCATAAA+CGG + chr1.1:45715212-45715231 None:intergenic 20.0%
!! TAATAAATATTAAAATGGCC+TGG - chr1.1:45714445-45714464 MS.gene056875:intron 20.0%
!! TAATATTGAAGTGCAATTTA+AGG - chr1.1:45713799-45713818 MS.gene056875:intron 20.0%
!! TAGTACAAAATATCAAATAG+CGG - chr1.1:45712118-45712137 MS.gene056875:intron 20.0%
!! TATCTTGTGTTTATTAGTAA+GGG - chr1.1:45713070-45713089 MS.gene056875:intron 20.0%
!! TATTTGTAAATCATGTACAA+CGG + chr1.1:45711954-45711973 None:intergenic 20.0%
!! TCTGATATCAAATACAAATT+TGG - chr1.1:45712403-45712422 MS.gene056875:intron 20.0%
!! TTATCTTGTGTTTATTAGTA+AGG - chr1.1:45713069-45713088 MS.gene056875:intron 20.0%
!!! AAATTAAAATGAACTTTTGC+AGG - chr1.1:45713210-45713229 MS.gene056875:intron 20.0%
!!! AAGTATTTATTTTTTCCGTT+TGG + chr1.1:45715533-45715552 None:intergenic 20.0%
!!! AATATTTTCTGAAAGAAAAC+AGG + chr1.1:45712542-45712561 None:intergenic 20.0%
!!! ACAAGATAATATTTTTTTGG+TGG + chr1.1:45713058-45713077 None:intergenic 20.0%
!!! ACCCTAAATTTTTCAAAATT+TGG - chr1.1:45713127-45713146 MS.gene056875:intron 20.0%
!!! ATATTTTCTGAAAGAAAACA+GGG + chr1.1:45712541-45712560 None:intergenic 20.0%
!!! ATTTTCAGAAACTTTCAAAA+TGG + chr1.1:45712897-45712916 None:intergenic 20.0%
!!! CATGTCATTTGATTTAATAT+AGG - chr1.1:45715865-45715884 MS.gene056875:CDS 20.0%
!!! GGTAAGATTTTATTAAAAAG+TGG + chr1.1:45712689-45712708 None:intergenic 20.0%
!!! TGTTTCAAATTTTAAAGGAA+CGG + chr1.1:45714161-45714180 None:intergenic 20.0%
!!! TTTTTAATAGAATCGTTTAC+AGG - chr1.1:45714989-45715008 MS.gene056875:intron 20.0%
! AAATAAAAGCAGTGTAGAAT+TGG + chr1.1:45713769-45713788 None:intergenic 25.0%
! AAGATTAAAGTTATTGGTGT+GGG - chr1.1:45711579-45711598 MS.gene056875:intron 25.0%
! ACATGAATACAAGAAGTAAA+CGG - chr1.1:45713104-45713123 MS.gene056875:intron 25.0%
! ATCAGAATTATGAGTATGAA+TGG + chr1.1:45715996-45716015 None:intergenic 25.0%
! CAAAAGTAGAAAAATTGTCT+TGG - chr1.1:45712625-45712644 MS.gene056875:intron 25.0%
! CCAAAAATTAAATTAGCACT+AGG + chr1.1:45715053-45715072 None:intergenic 25.0%
! CTAAAAAAACAACAAAGAGA+TGG + chr1.1:45714125-45714144 None:intergenic 25.0%
! GAAAAAAAAAAGAACAGCAT+GGG + chr1.1:45714102-45714121 None:intergenic 25.0%
! GAAATCAGTATGTACTATTT+AGG - chr1.1:45714592-45714611 MS.gene056875:intron 25.0%
! GTGAATGAATTAAATCCATA+TGG - chr1.1:45715821-45715840 MS.gene056875:CDS 25.0%
! TGCTAAACACTATTATAACT+AGG + chr1.1:45715282-45715301 None:intergenic 25.0%
! TTCACAGAAAAGTAAAACTA+TGG + chr1.1:45714853-45714872 None:intergenic 25.0%
!! ATTAGTTTCCTTTAAAGACA+AGG - chr1.1:45712474-45712493 MS.gene056875:intron 25.0%
!! CAAGACAATTTTTCTACTTT+TGG + chr1.1:45712627-45712646 None:intergenic 25.0%
!! CAATTAGTATGAATTTTCTG+TGG - chr1.1:45714768-45714787 MS.gene056875:intron 25.0%
!! CACGATGTTTCAAATTTTAA+AGG + chr1.1:45714166-45714185 None:intergenic 25.0%
!! CTTTTCTCTGAATATTACTT+GGG + chr1.1:45715508-45715527 None:intergenic 25.0%
!! GGAGTTTTCTTAGTATTTAT+CGG - chr1.1:45711915-45711934 MS.gene056875:intron 25.0%
!! TTAGTTTCCTTTAAAGACAA+GGG - chr1.1:45712475-45712494 MS.gene056875:intron 25.0%
!!! ATTTTGTTTAGCTGGTATTT+GGG - chr1.1:45715593-45715612 MS.gene056875:intron 25.0%
!!! CCTAGTGCTAATTTAATTTT+TGG - chr1.1:45715050-45715069 MS.gene056875:intron 25.0%
!!! CTTTAAAATTTGAAACATCG+TGG - chr1.1:45714164-45714183 MS.gene056875:CDS 25.0%
!!! TATTTTGTTTAGCTGGTATT+TGG - chr1.1:45715592-45715611 MS.gene056875:intron 25.0%
AAAGATAATGCATGAACAAC+AGG + chr1.1:45713563-45713582 None:intergenic 30.0%
AATTATGAGTATGAATGGCA+TGG + chr1.1:45715991-45716010 None:intergenic 30.0%
ACAAGTGTATAAAGATCAGT+AGG - chr1.1:45715354-45715373 MS.gene056875:intron 30.0%
AGCATAACATTAATTGCAAC+CGG - chr1.1:45715890-45715909 MS.gene056875:CDS 30.0%
AGCTACTATATGACATCATT+GGG + chr1.1:45712073-45712092 None:intergenic 30.0%
AGTTATCAGTAGTTCAATCA+AGG + chr1.1:45712218-45712237 None:intergenic 30.0%
ATTGGTTAAGCAGTTAAAAC+GGG + chr1.1:45712710-45712729 None:intergenic 30.0%
CAAAATATGAAAAGGAAACC+TGG + chr1.1:45714283-45714302 None:intergenic 30.0%
CAATTGTGATAGAGAAAAGA+TGG - chr1.1:45712820-45712839 MS.gene056875:intron 30.0%
CATATGGAATATGATCAACA+TGG - chr1.1:45715837-45715856 MS.gene056875:CDS 30.0%
CATGTTGATCATATTCCATA+TGG + chr1.1:45715839-45715858 None:intergenic 30.0%
CCAAGTAATATTCAGAGAAA+AGG - chr1.1:45715506-45715525 MS.gene056875:intron 30.0%
CCAGCTAAACAAAATATAAC+CGG + chr1.1:45715588-45715607 None:intergenic 30.0%
CCTGATTTCTTAAAGAAGAA+AGG - chr1.1:45716120-45716139 MS.gene056875:CDS 30.0%
GAAGATTAAAGTTATTGGTG+TGG - chr1.1:45711578-45711597 MS.gene056875:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr1.1:45713017-45713036 MS.gene056875:intron 30.0%
GATTTGAATTATACCTGTAG+TGG + chr1.1:45715947-45715966 None:intergenic 30.0%
GGAAAAAAAAAAGAACAGCA+TGG + chr1.1:45714103-45714122 None:intergenic 30.0%
TAAATATTAAAATGGCCTGG+TGG - chr1.1:45714448-45714467 MS.gene056875:intron 30.0%
TAGAGAAAAGATGGAATGAA+AGG - chr1.1:45712829-45712848 MS.gene056875:intron 30.0%
TAGCTACTATATGACATCAT+TGG + chr1.1:45712074-45712093 None:intergenic 30.0%
TATGGAAGACATTATTCCAA+TGG + chr1.1:45714738-45714757 None:intergenic 30.0%
TCAAATTTAATAGTCAAGGG+TGG + chr1.1:45714221-45714240 None:intergenic 30.0%
TCTATACCAATATCCAGTAA+AGG + chr1.1:45713970-45713989 None:intergenic 30.0%
TCTGTCTATTAAACTCATCA+TGG - chr1.1:45714938-45714957 MS.gene056875:intron 30.0%
TCTTATAGTCATGTATCCAT+TGG - chr1.1:45714719-45714738 MS.gene056875:intron 30.0%
TTCGTCCTTCAAATGAAAAA+GGG + chr1.1:45713330-45713349 None:intergenic 30.0%
TTTCGTCCTTCAAATGAAAA+AGG + chr1.1:45713331-45713350 None:intergenic 30.0%
! AATGTCCTTTTATCACTCTA+TGG - chr1.1:45715473-45715492 MS.gene056875:intron 30.0%
! CAGGTTTCCTTTTCATATTT+TGG - chr1.1:45714281-45714300 MS.gene056875:CDS 30.0%
! CATTGGTTAAGCAGTTAAAA+CGG + chr1.1:45712711-45712730 None:intergenic 30.0%
! CCTTTCTTCTTTAAGAAATC+AGG + chr1.1:45716123-45716142 None:intergenic 30.0%
! CCTTTTCTCTGAATATTACT+TGG + chr1.1:45715509-45715528 None:intergenic 30.0%
! TGAATATTACTTGGGTTTTG+TGG + chr1.1:45715500-45715519 None:intergenic 30.0%
!! TCAAATTTTAAAGGAACGGA+GGG + chr1.1:45714157-45714176 None:intergenic 30.0%
!! TTCAAATTTTAAAGGAACGG+AGG + chr1.1:45714158-45714177 None:intergenic 30.0%
!! TTTTGTTTAGCTGGTATTTG+GGG - chr1.1:45715594-45715613 MS.gene056875:intron 30.0%
!!! AATATTTTTTTGGTGGTGTC+CGG + chr1.1:45713051-45713070 None:intergenic 30.0%
!!! GACATTTTTTGTGTGTTCAA+GGG - chr1.1:45713902-45713921 MS.gene056875:CDS 30.0%
!!! TGACATTTTTTGTGTGTTCA+AGG - chr1.1:45713901-45713920 MS.gene056875:intron 30.0%
AAATCAACATTTACCATCCC+AGG + chr1.1:45713640-45713659 None:intergenic 35.0%
AATCAACATTTACCATCCCA+GGG + chr1.1:45713639-45713658 None:intergenic 35.0%
AATTCCTTCTTGTGCTTGAA+TGG + chr1.1:45713359-45713378 None:intergenic 35.0%
ACTGGATATTGGTATAGAGA+GGG - chr1.1:45713972-45713991 MS.gene056875:CDS 35.0%
AGATATATCCTCTAAGCTCT+CGG + chr1.1:45711535-45711554 None:intergenic 35.0%
ATAAAGATCAGTAGGTAGCT+CGG - chr1.1:45715362-45715381 MS.gene056875:intron 35.0%
ATTAAAGTTATTGGTGTGGG+AGG - chr1.1:45711582-45711601 MS.gene056875:intron 35.0%
ATTCAGAGAAAAGGACCAAA+CGG - chr1.1:45715515-45715534 MS.gene056875:intron 35.0%
ATTGCACAATTCATAAACGG+TGG + chr1.1:45715209-45715228 None:intergenic 35.0%
CAATACCTCGTTATACAGTA+GGG - chr1.1:45712276-45712295 MS.gene056875:intron 35.0%
CAGGCGAAGATTAAAGTTAT+TGG - chr1.1:45711573-45711592 MS.gene056875:CDS 35.0%
CCACATGCCAAAATATGAAA+AGG + chr1.1:45714291-45714310 None:intergenic 35.0%
GTAATAGATCCTTCACTTAC+TGG - chr1.1:45715077-45715096 MS.gene056875:intron 35.0%
TAATAGTCAAGGGTGGATAT+AGG + chr1.1:45714214-45714233 None:intergenic 35.0%
TACTGGATATTGGTATAGAG+AGG - chr1.1:45713971-45713990 MS.gene056875:CDS 35.0%
TAGTGAGAGTAATTACAGTC+AGG - chr1.1:45711554-45711573 MS.gene056875:CDS 35.0%
TCGTCCTTCAAATGAAAAAG+GGG + chr1.1:45713329-45713348 None:intergenic 35.0%
TGCTGATATTCGAGCTATAA+TGG - chr1.1:45713660-45713679 MS.gene056875:CDS 35.0%
TGTGCAATTTACAGCATTTC+CGG - chr1.1:45715221-45715240 MS.gene056875:intron 35.0%
TGTTGATCCCTTGTCTTTAA+AGG + chr1.1:45712485-45712504 None:intergenic 35.0%
TTCAAATGTTGCTGTGAAGT+AGG + chr1.1:45712166-45712185 None:intergenic 35.0%
TTGAAACATCGTGGTACTAT+GGG - chr1.1:45714173-45714192 MS.gene056875:CDS 35.0%
TTGCACAATTCATAAACGGT+GGG + chr1.1:45715208-45715227 None:intergenic 35.0%
TTGGAGCTAATACTTGTTTG+AGG - chr1.1:45714897-45714916 MS.gene056875:intron 35.0%
TTTGCAACACCAGCAATAAT+CGG + chr1.1:45713271-45713290 None:intergenic 35.0%
! GCAGTTAATAGCTTGTCATT+TGG + chr1.1:45713421-45713440 None:intergenic 35.0%
! TAAAATGAACTTTTGCAGGC+TGG - chr1.1:45713214-45713233 MS.gene056875:intron 35.0%
! TTGCAAACTTCGACTTTTGT+TGG - chr1.1:45714878-45714897 MS.gene056875:intron 35.0%
! TTTGAAACATCGTGGTACTA+TGG - chr1.1:45714172-45714191 MS.gene056875:CDS 35.0%
!! CCGGTTATATTTTGTTTAGC+TGG - chr1.1:45715585-45715604 MS.gene056875:intron 35.0%
!!! ATATTTTTTTGGTGGTGTCC+GGG + chr1.1:45713050-45713069 None:intergenic 35.0%
!!! CCTTTTCATATTTTGGCATG+TGG - chr1.1:45714288-45714307 MS.gene056875:CDS 35.0%
AAACTAGAACTGCCCTTTCT+CGG + chr1.1:45711498-45711517 None:intergenic 40.0%
AGATCCATTCAAGCACAAGA+AGG - chr1.1:45713352-45713371 MS.gene056875:intron 40.0%
AGATTGAATGCTTCCGTTAC+AGG + chr1.1:45713460-45713479 None:intergenic 40.0%
AGTAGATGAAAGACTCGTGT+AGG - chr1.1:45712794-45712813 MS.gene056875:intron 40.0%
ATGAGTATGAATGGCATGGA+TGG + chr1.1:45715987-45716006 None:intergenic 40.0%
ATGATAGAGAGTTCGATGCA+CGG - chr1.1:45711630-45711649 MS.gene056875:intron 40.0%
ATTCATAAACGGTGGGATAG+TGG + chr1.1:45715201-45715220 None:intergenic 40.0%
ATTGAATGCTTCCGTTACAG+GGG + chr1.1:45713458-45713477 None:intergenic 40.0%
ATTGTCCCTACTGTATAACG+AGG + chr1.1:45712284-45712303 None:intergenic 40.0%
ATTGTGTGGAACATAACTGG+TGG - chr1.1:45714003-45714022 MS.gene056875:intron 40.0%
CAGTCTCCTTTACTGGATAT+TGG - chr1.1:45713961-45713980 MS.gene056875:CDS 40.0%
CATCGAAATGATTCGATCTC+TGG - chr1.1:45715401-45715420 MS.gene056875:intron 40.0%
CCCTAGGAGAAGAAGATAAT+CGG - chr1.1:45715248-45715267 MS.gene056875:intron 40.0%
CCGATTATCTTCTTCTCCTA+GGG + chr1.1:45715251-45715270 None:intergenic 40.0%
CGAGTGCTTTATGCTATGTT+AGG - chr1.1:45712253-45712272 MS.gene056875:intron 40.0%
CTTACATGACCAGTAAGTGA+AGG + chr1.1:45715089-45715108 None:intergenic 40.0%
GATTGAATGCTTCCGTTACA+GGG + chr1.1:45713459-45713478 None:intergenic 40.0%
GCAATACCTCGTTATACAGT+AGG - chr1.1:45712275-45712294 MS.gene056875:intron 40.0%
GCACAGCTGAAACATATACT+TGG + chr1.1:45714080-45714099 None:intergenic 40.0%
GCTGATGATATTCTTCGACA+GGG - chr1.1:45713481-45713500 MS.gene056875:intron 40.0%
GGAATTGTGTGGAACATAAC+TGG - chr1.1:45714000-45714019 MS.gene056875:intron 40.0%
GTAGATGAAAGACTCGTGTA+GGG - chr1.1:45712795-45712814 MS.gene056875:intron 40.0%
GTGCAATTTACAGCATTTCC+GGG - chr1.1:45715222-45715241 MS.gene056875:intron 40.0%
GTGGTCCATAGAGTGATAAA+AGG + chr1.1:45715481-45715500 None:intergenic 40.0%
GTGTGTTCAAGGGAAAACAA+GGG - chr1.1:45713912-45713931 MS.gene056875:CDS 40.0%
TATACTCTTCTCATGAAGCC+AGG - chr1.1:45714262-45714281 MS.gene056875:CDS 40.0%
TATATGCAAGGTTCAAACCC+CGG - chr1.1:45713029-45713048 MS.gene056875:intron 40.0%
TGCTATTCAGTCTCCTTTAC+TGG - chr1.1:45713954-45713973 MS.gene056875:CDS 40.0%
TGCTGATGATATTCTTCGAC+AGG - chr1.1:45713480-45713499 MS.gene056875:intron 40.0%
TGTGTGTTCAAGGGAAAACA+AGG - chr1.1:45713911-45713930 MS.gene056875:CDS 40.0%
TTCTCAATCTACCCCTGTAA+CGG - chr1.1:45713444-45713463 MS.gene056875:intron 40.0%
TTGTGTGGAACATAACTGGT+GGG - chr1.1:45714004-45714023 MS.gene056875:intron 40.0%
! AGGCTCTTTTCTGCAATTGT+TGG - chr1.1:45713819-45713838 MS.gene056875:intron 40.0%
! ATCTGACTTTGTTTGAGGTG+AGG - chr1.1:45714031-45714050 MS.gene056875:intron 40.0%
! CAATGGGTATACTGACTGTT+GGG - chr1.1:45713293-45713312 MS.gene056875:intron 40.0%
! GAGTGATCTGACTTTGTTTG+AGG - chr1.1:45714026-45714045 MS.gene056875:intron 40.0%
! GGTGTTTCTTTTAGTAGTGC+AGG - chr1.1:45712434-45712453 MS.gene056875:intron 40.0%
! GTTTCTTTTAGTAGTGCAGG+AGG - chr1.1:45712437-45712456 MS.gene056875:intron 40.0%
! TCAATGGGTATACTGACTGT+TGG - chr1.1:45713292-45713311 MS.gene056875:intron 40.0%
! TCTGACTTTGTTTGAGGTGA+GGG - chr1.1:45714032-45714051 MS.gene056875:intron 40.0%
!! AATGCTGGTTCTTCACTGAT+GGG - chr1.1:45713685-45713704 MS.gene056875:intron 40.0%
!! ACGACCCCTTTTTCATTTGA+AGG - chr1.1:45713322-45713341 MS.gene056875:intron 40.0%
!! AGAAAGGGCAGTTCTAGTTT+GGG - chr1.1:45711498-45711517 MS.gene056875:CDS 40.0%
!!! TATTTTTTTGGTGGTGTCCG+GGG + chr1.1:45713049-45713068 None:intergenic 40.0%
AAAGTTATTGGTGTGGGAGG+TGG - chr1.1:45711585-45711604 MS.gene056875:intron 45.0%
AAGCAGAGAGTCGATTGAAG+AGG - chr1.1:45711800-45711819 MS.gene056875:intron 45.0%
AAGTAGGACTACAGGGCTAT+AGG + chr1.1:45712150-45712169 None:intergenic 45.0%
ACATGAAGAGAAGCCACTAC+AGG - chr1.1:45715931-45715950 MS.gene056875:CDS 45.0%
ACGGTGAATGTTCCGAGAAA+GGG - chr1.1:45711483-45711502 MS.gene056875:CDS 45.0%
ACTACCATCATCAGAGAACG+AGG + chr1.1:45716088-45716107 None:intergenic 45.0%
AGAAGTTATCTACGACCTCG+TGG - chr1.1:45715025-45715044 MS.gene056875:intron 45.0%
ATGAATGGCATGGATGGAGA+GGG + chr1.1:45715981-45716000 None:intergenic 45.0%
ATTGGTATAGAGAGGGCTAC+TGG - chr1.1:45713979-45713998 MS.gene056875:intron 45.0%
CAGCATTCATTCCCATCTCA+GGG + chr1.1:45711773-45711792 None:intergenic 45.0%
CATCAGTGAAGAACCAGCAT+TGG + chr1.1:45713686-45713705 None:intergenic 45.0%
CTAAACAAGCCCACCCAAAT+TGG + chr1.1:45714536-45714555 None:intergenic 45.0%
GCCGATTATCTTCTTCTCCT+AGG + chr1.1:45715252-45715271 None:intergenic 45.0%
GGATTTATCCGAGAGCTTAG+AGG - chr1.1:45711524-45711543 MS.gene056875:CDS 45.0%
GGTACTATGGGAAGTTGCTA+GGG - chr1.1:45714185-45714204 MS.gene056875:CDS 45.0%
GTACTATGGGAAGTTGCTAG+GGG - chr1.1:45714186-45714205 MS.gene056875:CDS 45.0%
GTTCCAAACCAATCTGCAGA+CGG + chr1.1:45711722-45711741 None:intergenic 45.0%
TATGAATGGCATGGATGGAG+AGG + chr1.1:45715982-45716001 None:intergenic 45.0%
TCGATTGAAGAGGCGGTTTA+TGG - chr1.1:45711810-45711829 MS.gene056875:intron 45.0%
TCTTGTACTGTGAGCTTCTC+CGG - chr1.1:45715566-45715585 MS.gene056875:intron 45.0%
TGCTGTGAAGTAGGACTACA+GGG + chr1.1:45712157-45712176 None:intergenic 45.0%
TGGTACTATGGGAAGTTGCT+AGG - chr1.1:45714184-45714203 MS.gene056875:CDS 45.0%
TTCCTCTTGACGCTTGAATC+CGG + chr1.1:45715912-45715931 None:intergenic 45.0%
TTGCTGTGAAGTAGGACTAC+AGG + chr1.1:45712158-45712177 None:intergenic 45.0%
! ATTTGGAACAGACGTGCTTG+CGG - chr1.1:45713144-45713163 MS.gene056875:intron 45.0%
! GAACTTTTGCAGGCTGGAAT+GGG - chr1.1:45713220-45713239 MS.gene056875:intron 45.0%
! GAGAAAGGGCAGTTCTAGTT+TGG - chr1.1:45711497-45711516 MS.gene056875:CDS 45.0%
! TCAAAGAGCTCTAGTGAGAG+AGG + chr1.1:45712037-45712056 None:intergenic 45.0%
! TGAACTTTTGCAGGCTGGAA+TGG - chr1.1:45713219-45713238 MS.gene056875:intron 45.0%
! TTAAAATGGCCTGGTGGTGT+TGG - chr1.1:45714454-45714473 MS.gene056875:intron 45.0%
!! ATGCTGGTTCTTCACTGATG+GGG - chr1.1:45713686-45713705 MS.gene056875:intron 45.0%
!! ATTGGTTTGGAACTTACGCG+AGG - chr1.1:45711729-45711748 MS.gene056875:intron 45.0%
!! CAATGCTGGTTCTTCACTGA+TGG - chr1.1:45713684-45713703 MS.gene056875:CDS 45.0%
!! GCTGGTGTTGCAAAGTCAAT+GGG - chr1.1:45713277-45713296 MS.gene056875:intron 45.0%
!! TGCTGGTGTTGCAAAGTCAA+TGG - chr1.1:45713276-45713295 MS.gene056875:intron 45.0%
!!! ATTAACATATATTTTAAAAA+AGG + chr1.1:45712759-45712778 None:intergenic 5.0%
!!! TAATTTAAAAATCATATTTT+TGG + chr1.1:45714635-45714654 None:intergenic 5.0%
AACCGGATTCAAGCGTCAAG+AGG - chr1.1:45715907-45715926 MS.gene056875:CDS 50.0%
AAGGCTGTCAGTGTTGTCGA+CGG + chr1.1:45712199-45712218 None:intergenic 50.0%
AATTAGCACTAGGGTCCACG+AGG + chr1.1:45715043-45715062 None:intergenic 50.0%
ACTTACTGAGTGCAGATCCC+TGG - chr1.1:45713619-45713638 MS.gene056875:CDS 50.0%
AGAACGTTAACCAGTGCCCT+CGG + chr1.1:45712736-45712755 None:intergenic 50.0%
AGACGGTTCTCAGGAAACAC+AGG + chr1.1:45711705-45711724 None:intergenic 50.0%
AGAGGGCTACTGGAATTGTG+TGG - chr1.1:45713989-45714008 MS.gene056875:intron 50.0%
AGCTCTTTGAGCTAGAAGCG+CGG - chr1.1:45712047-45712066 MS.gene056875:intron 50.0%
ATGGATGGAGAGGGAATGAG+AGG + chr1.1:45715972-45715991 None:intergenic 50.0%
ATGGGGATAGGAACTGCAAC+TGG - chr1.1:45713703-45713722 MS.gene056875:intron 50.0%
CACGGTGAATGTTCCGAGAA+AGG - chr1.1:45711482-45711501 MS.gene056875:CDS 50.0%
CAGAGAGTCGATTGAAGAGG+CGG - chr1.1:45711803-45711822 MS.gene056875:intron 50.0%
CCATCATCAGAGAACGAGGA+AGG + chr1.1:45716084-45716103 None:intergenic 50.0%
CCTTCCTCGTTCTCTGATGA+TGG - chr1.1:45716081-45716100 MS.gene056875:CDS 50.0%
CGAGCTATAATGGCCAATGC+TGG - chr1.1:45713670-45713689 MS.gene056875:CDS 50.0%
CTTACTGAGTGCAGATCCCT+GGG - chr1.1:45713620-45713639 MS.gene056875:CDS 50.0%
CTTCTTCTCCTAGGGATACC+CGG + chr1.1:45715243-45715262 None:intergenic 50.0%
GCAGCATTCATTCCCATCTC+AGG + chr1.1:45711774-45711793 None:intergenic 50.0%
GGCGGTTTATGGAGCTGATA+TGG - chr1.1:45711821-45711840 MS.gene056875:intron 50.0%
GGTTCTTCACTGATGGGGAT+AGG - chr1.1:45713691-45713710 MS.gene056875:intron 50.0%
TGAGCTTAGCTCAGTCGGTA+GGG - chr1.1:45712995-45713014 MS.gene056875:intron 50.0%
TGGATGGAGAGGGAATGAGA+GGG + chr1.1:45715971-45715990 None:intergenic 50.0%
TTGGAACTTACGCGAGGTCT+TGG - chr1.1:45711735-45711754 MS.gene056875:intron 50.0%
! ACAGACTAGTCAGCTCACTC+AGG - chr1.1:45716029-45716048 MS.gene056875:CDS 50.0%
! CAGACTAGTCAGCTCACTCA+GGG - chr1.1:45716030-45716049 MS.gene056875:CDS 50.0%
! CGATGCACGGAGTTGAGTTT+TGG - chr1.1:45711643-45711662 MS.gene056875:intron 50.0%
! GAACCGTCTGCAGATTGGTT+TGG - chr1.1:45711716-45711735 MS.gene056875:CDS 50.0%
AACGTTAACCAGTGCCCTCG+GGG + chr1.1:45712734-45712753 None:intergenic 55.0%
AAGGACGCTCACGCTATCCT+AGG - chr1.1:45716139-45716158 MS.gene056875:CDS 55.0%
ACTGCTTAACCAATGCCCCG+AGG - chr1.1:45712716-45712735 MS.gene056875:intron 55.0%
AGCTGGTGGTAACCCTGAGA+TGG - chr1.1:45711758-45711777 MS.gene056875:intron 55.0%
AGGACGCTCACGCTATCCTA+GGG - chr1.1:45716140-45716159 MS.gene056875:CDS 55.0%
AGGCTCGAACCAGAGACCTT+GGG + chr1.1:45714505-45714524 None:intergenic 55.0%
ATTCCTTAACCAGTGCCCCC+GGG + chr1.1:45712604-45712623 None:intergenic 55.0%
CAGCATTTCCGGGTATCCCT+AGG - chr1.1:45715232-45715251 MS.gene056875:intron 55.0%
CCAATCTGCAGACGGTTCTC+AGG + chr1.1:45711714-45711733 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+CGG - chr1.1:45712990-45713009 MS.gene056875:intron 55.0%
CCTGAGAACCGTCTGCAGAT+TGG - chr1.1:45711711-45711730 MS.gene056875:CDS 55.0%
CTGCTTAACCAATGCCCCGA+GGG - chr1.1:45712717-45712736 MS.gene056875:intron 55.0%
GAACGTTAACCAGTGCCCTC+GGG + chr1.1:45712735-45712754 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+CGG + chr1.1:45712605-45712624 None:intergenic 55.0%
GCTGGTGGTAACCCTGAGAT+GGG - chr1.1:45711759-45711778 MS.gene056875:intron 55.0%
GGTGGTGCTCCGATTATTGC+TGG - chr1.1:45713259-45713278 MS.gene056875:intron 55.0%
GTGAGCTTAGCTCAGTCGGT+AGG - chr1.1:45712994-45713013 MS.gene056875:intron 55.0%
GTTATTGGTGTGGGAGGTGG+TGG - chr1.1:45711588-45711607 MS.gene056875:intron 55.0%
TAGAGGTGAGGCGAGTAGCA+CGG - chr1.1:45711464-45711483 MS.gene056875:CDS 55.0%
TCTTGTTAACCAGTGCCCCG+GGG - chr1.1:45712585-45712604 MS.gene056875:CDS 55.0%
TTGGAGTATGCTCCTCCCCA+AGG - chr1.1:45714486-45714505 MS.gene056875:intron 55.0%
! ATTCTTCGACAGGGCGTTCG+TGG - chr1.1:45713490-45713509 MS.gene056875:intron 55.0%
! CTTTTGCAGGCTGGAATGGG+TGG - chr1.1:45713223-45713242 MS.gene056875:intron 55.0%
! GTCTTGTTAACCAGTGCCCC+GGG - chr1.1:45712584-45712603 MS.gene056875:CDS 55.0%
! TTGGGGAGGAGCATACTCCA+AGG + chr1.1:45714487-45714506 None:intergenic 55.0%
!! AGCCTCCTCGGTGCCAATTT+GGG - chr1.1:45714520-45714539 MS.gene056875:intron 55.0%
!! GGGCAGTTCTAGTTTGGGTG+AGG - chr1.1:45711503-45711522 MS.gene056875:CDS 55.0%
!! GGTCTTGTTAACCAGTGCCC+CGG - chr1.1:45712583-45712602 MS.gene056875:CDS 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG - chr1.1:45714467-45714486 MS.gene056875:intron 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG - chr1.1:45714524-45714543 MS.gene056875:intron 55.0%
ATGCTCCTCCCCAAGGTCTC+TGG - chr1.1:45714493-45714512 MS.gene056875:intron 60.0%
CCGACTGAGCTAAGCTCACG+AGG + chr1.1:45712993-45713012 None:intergenic 60.0%
CTGAGTGCAGATCCCTGGGA+TGG - chr1.1:45713624-45713643 MS.gene056875:CDS 60.0%
CTTACGCGAGGTCTTGGAGC+TGG - chr1.1:45711741-45711760 MS.gene056875:intron 60.0%
CTTGTTAACCAGTGCCCCGG+GGG - chr1.1:45712586-45712605 MS.gene056875:CDS 60.0%
GAGGCTCGAACCAGAGACCT+TGG + chr1.1:45714506-45714525 None:intergenic 60.0%
GGCTCGAACCAGAGACCTTG+GGG + chr1.1:45714504-45714523 None:intergenic 60.0%
GGTCTCAAGCCAACACCACC+AGG + chr1.1:45714466-45714485 None:intergenic 60.0%
TCGAACCAGAGACCTTGGGG+AGG + chr1.1:45714501-45714520 None:intergenic 60.0%
TTCCTTAACCAGTGCCCCCG+GGG + chr1.1:45712603-45712622 None:intergenic 60.0%
TTGCAGGCTGGAATGGGTGG+TGG - chr1.1:45713226-45713245 MS.gene056875:intron 60.0%
! AATCGGAGCACCACCTGTGC+CGG + chr1.1:45713254-45713273 None:intergenic 60.0%
! CACCCAAATTGGCACCGAGG+AGG + chr1.1:45714525-45714544 None:intergenic 60.0%
! GTCTCTGGTTCGAGCCTCCT+CGG - chr1.1:45714508-45714527 MS.gene056875:intron 60.0%
!! CTCCTCGGTGCCAATTTGGG+TGG - chr1.1:45714523-45714542 MS.gene056875:intron 60.0%
!! GAGCCTCCTCGGTGCCAATT+TGG - chr1.1:45714519-45714538 MS.gene056875:intron 60.0%
!! GCTGGAATGGGTGGTGGAAC+CGG - chr1.1:45713232-45713251 MS.gene056875:intron 60.0%
!! GGGAGGTGGTGGATCTAACG+CGG - chr1.1:45711599-45711618 MS.gene056875:intron 60.0%
AACCAGTGCCCTCGGGGCAT+TGG + chr1.1:45712728-45712747 None:intergenic 65.0%
ACGCGAGGTCTTGGAGCTGG+TGG - chr1.1:45711744-45711763 MS.gene056875:intron 65.0%
GCCCACCCAAATTGGCACCG+AGG + chr1.1:45714528-45714547 None:intergenic 65.0%
! AACCAATGCCCCGAGGGCAC+TGG - chr1.1:45712723-45712742 MS.gene056875:intron 65.0%
!! ATGGGTGGTGGAACCGGCAC+AGG - chr1.1:45713238-45713257 MS.gene056875:intron 65.0%
!! GGTGGTGGAACCGGCACAGG+TGG - chr1.1:45713241-45713260 MS.gene056875:intron 70.0%
!! TGCCCCGGGGGCACTGGTTA+AGG - chr1.1:45712598-45712617 MS.gene056875:intron 70.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr1.1:45712597-45712616 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr1.1:45712592-45712611 MS.gene056875:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 45711459 45716167 45711459 ID=MS.gene056875
chr1.1 mRNA 45711459 45716167 45711459 ID=MS.gene056875.t1;Parent=MS.gene056875
chr1.1 exon 45715772 45716167 45715772 ID=MS.gene056875.t1.exon1;Parent=MS.gene056875.t1
chr1.1 CDS 45715772 45716167 45715772 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
chr1.1 exon 45714095 45714394 45714095 ID=MS.gene056875.t1.exon2;Parent=MS.gene056875.t1
chr1.1 CDS 45714095 45714394 45714095 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
chr1.1 exon 45713902 45713992 45713902 ID=MS.gene056875.t1.exon3;Parent=MS.gene056875.t1
chr1.1 CDS 45713902 45713992 45713902 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
chr1.1 exon 45713579 45713703 45713579 ID=MS.gene056875.t1.exon4;Parent=MS.gene056875.t1
chr1.1 CDS 45713579 45713703 45713579 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
chr1.1 exon 45712523 45712615 45712523 ID=MS.gene056875.t1.exon5;Parent=MS.gene056875.t1
chr1.1 CDS 45712523 45712615 45712523 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
chr1.1 exon 45711674 45711739 45711674 ID=MS.gene056875.t1.exon6;Parent=MS.gene056875.t1
chr1.1 CDS 45711674 45711739 45711674 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
chr1.1 exon 45711459 45711593 45711459 ID=MS.gene056875.t1.exon7;Parent=MS.gene056875.t1
chr1.1 CDS 45711459 45711593 45711459 ID=cds.MS.gene056875.t1;Parent=MS.gene056875.t1
Gene Sequence

>MS.gene056875

ATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGCAGTTCTAGTTTGGGTGAGGATTTATCCGAGAGCTTAGAGGATATATCTAGTGAGAGTAATTACAGTCAGGCGAAGATTAAAGTTATTGGTGTGGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCACGGAGTTGAGTTTTGGATTGTTAATACTGATGTGCAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGCAGAGAGTCGATTGAAGAGGCGGTTTATGGAGCTGATATGGTCTTTGTTACAGTATGTTCAACTACTTTTCTTTAATTATAATTTCTGCACATTGAATTATATTTTACATTAGGAGTTTTCTTAGTATTTATCGGTCTAAATGTTACACCGTTGTACATGATTTACAAATATTAGTATATGTGTTAGGGATCAACTCCCTCAAACATTGACTTATTTTATATCTTAGATGTCCTCTCTCACTAGAGCTCTTTGAGCTAGAAGCGCGGCCCAATGATGTCATATAGTAGCTACAGCACTACAATATAACAGAAATTTAGTACAAAATATCAAATAGCGGCTATAGCCTATAGCCCTGTAGTCCTACTTCACAGCAACATTTGAACTGCAATCTGCCGTCGACAACACTGACAGCCTTGATTGAACTACTGATAACTACTATTGAACACTTACGAGTGCTTTATGCTATGTTAGGCAATACCTCGTTATACAGTAGGGACAATGTAGTCAAATGCAAAAAGAAATTCTTTTTTTTTGAAGAAAAAAAAAAGAAATTCTTAATAAAAGTTTGTTATTATGATCATAAGTTAATCTTAGTGCACTCTGATATCAAATACAAATTTGGTTATTTGTGGTGTTTCTTTTAGTAGTGCAGGAGGAAATTTATCAAATAATTAGTTTCCTTTAAAGACAAGGGATCAACAGTTGATATTTATAACATCTTTAAGAATGCAAGACCCTGTTTTCTTTCAGAAAATATTTTCAGTTTTCATTTTTTAAAGGGTCTTGTTAACCAGTGCCCCGGGGGCACTGGTTAAGGAATCCAAAAGTAGAAAAATTGTCTTGGAAATATAAACTGTTACTTTTGACTAACTAATTATTACACCACTTTTTAATAAAATCTTACCCGTTTTAACTGCTTAACCAATGCCCCGAGGGCACTGGTTAACGTTCTCCTTTTTTAAAATATATGTTAATTTTAAATTGTTAACAAGTAGATGAAAGACTCGTGTAGGGAACAATTGTGATAGAGAAAAGATGGAATGAAAGGTAGAAAGAATGCATTTTTAGAAACAATGAAAACAATGTTTTGCCATTTTGAAAGTTTCTGAAAATGCTAGATCTATTTTACAAAATTATAAAAGAAAATGGTGAGGTGAGTATTGAATCTATATTATCTTGTGTTTGTCCTCGTGAGCTTAGCTCAGTCGGTAGGGACAATGCATAATATATGCAAGGTTCAAACCCCGGACACCACCAAAAAAATATTATCTTGTGTTTATTAGTAAGGGTGAAAATGAAAACATGAATACAAGAAGTAAACGGACCCTAAATTTTTCAAAATTTGGAACAGACGTGCTTGCGGTTCTTTTAAATTGTTCTTTGTTTGTACATTTTCCTAAACTTGAAAATTAAAATGAACTTTTGCAGGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATTATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGGATTGTCACGACCCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAGTATGAAATTGCTAATGATCTTTGCATTCCTGTTGTTCATGCATTATCTTTCTGTAACAAGTAAAATCAATAATGCTCATTGATTTTACTTACTGAGTGCAGATCCCTGGGATGGTAAATGTTGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCAACTGGTATGTATCAAAACTGAAAATTGTTTAGACTTCAATTTTTACCAATTCTACACTGCTTTTATTTTTCATTATTCTAATATTGAAGTGCAATTTAAGGCTCTTTTCTGCAATTGTTGGTTCAGAATTATGAGTGCATTTTAACTTTTGAACTTCATATATTATTGGAATTTATCTTATGACATTTTTTGTGTGTTCAAGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTGGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTGACTTTGTTTGAGGTGAGGGTGATCTTATGCTTTAATCTTTGCCAAGTATATGTTTCAGCTGTGCCCATGCTGTTCTTTTTTTTTTCCCATCTCTTTGTTGTTTTTTTAGCTTCTTTTTCCCTCCGTTCCTTTAAAATTTGAAACATCGTGGTACTATGGGAAGTTGCTAGGGGCTCCTATATCCACCCTTGACTATTAAATTTGAATCTTCATTTTCAAAATGCTATATACTCTTCTCATGAAGCCAGGTTTCCTTTTCATATTTTGGCATGTGGTAAGCTTTTAAATCAAATTAAAATTAAATTTTTGTTCTAATTAATTATTCAATTAAAGGAGGTTTTTTCTATCCTTGATTTCTTTAAATGTTTCTTAATTTTCTTCAATCAAGATTAAATAAAATAGGATACTCTAATAAATATTAAAATGGCCTGGTGGTGTTGGCTTGAGACCTTGGAGTATGCTCCTCCCCAAGGTCTCTGGTTCGAGCCTCCTCGGTGCCAATTTGGGTGGGCTTGTTTAGTTTCTTCAAAAAAAAGTATTTTTGCAAATTATTATTGAAATCAGTATGTACTATTTAGGCTAATTTTTAGATTTTTCCAAAAATATGATTTTTAAATTATCTGCATTTTATATTTTTATGATCATAATCTTTCAAAATTTTGTTATATTTTTGCAAATAATCTTCTTATAGTCATGTATCCATTGGAATAATGTCTTCCATATTTTATATTGCAATTAGTATGAATTTTCTGTGGTTGTGATATCAATTTGAGAGATCGATTCTAAAAATTTTGTTATTGAAAAGATTACATTTCCATAGTTTTACTTTTCTGTGAAGCGTTTTGCAAACTTCGACTTTTGTTGGAGCTAATACTTGTTTGAGGCGTAGCTATTCATAATCTTCTGTCTATTAAACTCATCATGGTCTTGCACTACCCTTTTGTATGCAATAGTTTTTAATAGAATCGTTTACAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCATGTAAGTTAAACTATGTACTCTTTAACATATTTTTTTTGACTGAATGTAATCTTTGACATTAATCATAAGAAGTCATGCACTCATGCATGATATGCCACTATCCCACCGTTTATGAATTGTGCAATTTACAGCATTTCCGGGTATCCCTAGGAGAAGAAGATAATCGGCAATCATTCCTAGTTATAATAGTGTTTAGCAATTGACTTGTTTTAAACCATAAGAAATTCATAAATGATTTGAAATGGTTTGTACAAGTGTATAAAGATCAGTAGGTAGCTCGGTTAATGAGCTAAGAGACATCGAAATGATTCGATCTCTGGACATGAACATAACTACTACCACAAATATTTAGTCCTCAAAGAAATAGAGAATGTCCTTTTATCACTCTATGGACCACAAAACCCAAGTAATATTCAGAGAAAAGGACCAAACGGAAAAAATAAATACTTGATCAAGTTCAAATCTTGTACTGTGAGCTTCTCCGGTTATATTTTGTTTAGCTGGTATTTGGGGTTGAATACTTTTCAAACTTCATTTGATGAATATATAATCGGTTTAATTTTGATACACTGTTATTCTAAAAAGTTTTAAACTGACAACAAATTACAAACAATCATATATTTGATTTTAAAGCAGTTATGATAAAAAAGTCAATCATTTATAATGATCTAATGATTTTGATTAATTGATATTGTAAAAAAGATTTACATTGTCGGTGTGAATGAATTAAATCCATATGGAATATGATCAACATGGTGAACCATGTCATTTGATTTAATATAGGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCACTACAGGTATAATTCAAATCTCCCTCTCATTCCCTCTCCATCCATGCCATTCATACTCATAATTCTGATTCATGTTCTAAACACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCAGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATACCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

Protein sequence

>MS.gene056875.t1

MLRGEASSTVNVPRKGSSSLGEDLSESLEDISSESNYSQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESRESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGHVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNQRPSSFSDDGSLFEIPDFLKKKGRSRYPRV