AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39388

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39388.t1 MTR_8g008660 92.806 278 20 0 1 278 1 278 0.0 532
MS.gene39388.t1 MTR_3g464040 84.074 270 43 0 9 278 1 270 1.48e-167 464
MS.gene39388.t1 MTR_8g008505 79.004 281 56 2 1 278 1 281 3.31e-161 449
MS.gene39388.t1 MTR_8g008500 78.169 284 56 2 1 278 1 284 2.54e-160 447
MS.gene39388.t1 MTR_8g007675 69.020 255 76 1 27 278 32 286 2.95e-126 361
MS.gene39388.t1 MTR_8g007670 59.922 257 99 2 26 278 6 262 1.55e-110 320
MS.gene39388.t1 MTR_8g007670 54.724 254 73 2 26 278 6 218 1.36e-94 278
MS.gene39388.t1 MTR_5g018300 50.195 257 123 3 26 278 7 262 9.56e-92 272
MS.gene39388.t1 MTR_5g018320 50.965 259 122 3 24 278 2 259 1.96e-91 271
MS.gene39388.t1 MTR_5g018280 49.416 257 124 4 26 278 7 261 3.07e-86 258
MS.gene39388.t1 MTR_8g079120 40.467 257 143 5 26 278 10 260 5.09e-59 189
MS.gene39388.t1 MTR_5g018365 40.856 257 142 5 26 278 11 261 1.59e-57 185
MS.gene39388.t1 MTR_5g018350 37.402 254 153 4 27 278 7 256 5.13e-52 171
MS.gene39388.t1 MTR_5g068100 35.887 248 140 4 26 264 29 266 2.76e-47 159
MS.gene39388.t1 MTR_7g015220 37.154 253 150 4 27 275 124 371 1.98e-46 159
MS.gene39388.t1 MTR_3g093730 35.391 243 147 3 26 264 35 271 6.92e-45 153
MS.gene39388.t1 MTR_3g005410 34.766 256 157 6 26 276 93 343 4.38e-43 150
MS.gene39388.t1 MTR_8g079120 44.242 165 85 3 26 186 52 213 1.82e-41 142
MS.gene39388.t1 MTR_3g093730 31.276 243 112 4 26 264 35 226 8.06e-34 123
MS.gene39388.t1 MTR_5g008130 64.935 77 27 0 202 278 4 80 4.05e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39388.t1 AT2G23610 43.798 258 137 4 26 278 8 262 3.02e-68 213
MS.gene39388.t1 AT2G23600 44.015 259 135 6 26 278 8 262 1.19e-65 206
MS.gene39388.t1 AT2G23620 44.402 259 134 5 26 278 8 262 1.31e-65 206
MS.gene39388.t1 AT2G23600 44.015 259 135 6 26 278 23 277 1.96e-65 206
MS.gene39388.t1 AT3G50440 41.797 256 141 3 28 278 22 274 2.79e-65 205
MS.gene39388.t1 AT2G23590 40.876 274 142 8 15 278 8 271 2.78e-62 197
MS.gene39388.t1 AT2G23580 41.825 263 140 7 24 278 5 262 6.15e-61 194
MS.gene39388.t1 AT4G37150 40.154 259 144 7 26 278 2 255 1.68e-56 182
MS.gene39388.t1 AT2G23610 39.764 254 108 6 26 278 8 217 6.30e-54 174
MS.gene39388.t1 AT3G29770 40.945 254 141 4 27 276 138 386 2.03e-53 178
MS.gene39388.t1 AT2G23550 38.783 263 148 6 24 278 12 269 2.17e-53 175
MS.gene39388.t1 AT2G23550 38.783 263 148 6 24 278 5 262 2.53e-53 174
MS.gene39388.t1 AT5G10300 40.234 256 145 5 27 278 6 257 6.72e-53 173
MS.gene39388.t1 AT2G23560 37.066 259 155 5 24 278 5 259 7.04e-53 173
MS.gene39388.t1 AT1G33990 36.719 256 152 5 26 276 96 346 3.24e-52 174
MS.gene39388.t1 AT4G09900 35.938 256 154 5 26 276 97 347 9.95e-49 165
MS.gene39388.t1 AT1G26360 37.066 259 154 4 22 276 184 437 1.64e-48 167
MS.gene39388.t1 AT4G16690 37.849 251 143 6 27 272 12 254 3.67e-48 161
MS.gene39388.t1 AT5G58310 35.135 259 153 5 27 275 5 258 9.76e-47 157
MS.gene39388.t1 AT1G69240 36.015 261 156 6 22 276 182 437 2.25e-46 161
MS.gene39388.t1 AT3G10870 35.537 242 150 2 27 264 20 259 9.93e-45 152
MS.gene39388.t1 AT2G23600 46.951 164 80 4 26 183 23 185 1.33e-43 147
MS.gene39388.t1 AT2G23550 34.733 262 131 6 24 278 5 233 7.88e-40 139
MS.gene39388.t1 AT2G23580 43.636 165 85 4 24 181 5 168 1.34e-39 137
MS.gene39388.t1 AT5G10300 42.945 163 88 3 27 185 6 167 6.43e-36 127
MS.gene39388.t1 AT4G37140 51.923 104 50 0 26 129 2 105 1.61e-35 124
MS.gene39388.t1 AT2G23550 40.000 165 91 3 24 181 12 175 2.30e-33 121
MS.gene39388.t1 AT4G37140 49.451 91 46 0 26 116 2 92 9.08e-30 108
MS.gene39388.t1 AT2G23570 37.017 181 104 4 104 278 2 178 4.99e-27 103
MS.gene39388.t1 AT3G29770 54.795 73 33 0 27 99 138 210 2.73e-21 91.3

Find 53 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATTAGATGACATGATTT+TGG 0.151203 8.2:-82044226 None:intergenic
GATTAAAACTTGTGAAATTA+AGG 0.180617 8.2:-82043905 None:intergenic
TCCCATTTGAGAAGAATAAT+TGG 0.207905 8.2:-82044170 None:intergenic
TTTGACACTTGGATTATCTT+TGG 0.299103 8.2:+82044687 MS.gene39388:CDS
ATTCTTGTCGGTCATAGTTT+TGG 0.301938 8.2:+82043795 MS.gene39388:CDS
TCCCAATTATTCTTCTCAAA+TGG 0.322968 8.2:+82044168 MS.gene39388:CDS
GATTCCATAAATGTCATAAA+AGG 0.332073 8.2:-82043750 None:intergenic
ATCACTTTCACCTTTACATA+TGG 0.333062 8.2:-82044868 None:intergenic
TGAATCTCTTGAACCTGTAT+TGG 0.356816 8.2:-82043705 None:intergenic
AAGCACTTTGTGCTTGTTCA+TGG 0.379288 8.2:+82043582 MS.gene39388:CDS
CCCAATTATTCTTCTCAAAT+GGG 0.384721 8.2:+82044169 MS.gene39388:CDS
CACCCTTCCATTCCTCTCCT+TGG 0.397125 8.2:-82044767 None:intergenic
TGGTGCATGGTGTTGGTATA+AGG 0.413431 8.2:+82043614 MS.gene39388:CDS
CCCATTTGAGAAGAATAATT+GGG 0.417231 8.2:-82044169 None:intergenic
CAAGCGCAGGATTTGACACT+TGG 0.426425 8.2:+82044676 MS.gene39388:intron
CTTGTTCATGGAGCTTTCCA+TGG 0.435353 8.2:+82043594 MS.gene39388:CDS
CGCATAGAATTCCACTCGAC+AGG 0.437272 8.2:+82044140 MS.gene39388:intron
TTGCTGATGATGAAGACTTT+AGG 0.448268 8.2:-82044790 None:intergenic
GTTACAACTATTGACTTGGC+TGG 0.453693 8.2:+82043669 MS.gene39388:CDS
GACAAGAATCACCTTCTCCT+TGG 0.459569 8.2:-82043781 None:intergenic
ACAAGAATCACCTTCTCCTT+GGG 0.471648 8.2:-82043780 None:intergenic
GATACCCTTATCTGTTGCTA+TGG 0.489986 8.2:+82043821 MS.gene39388:CDS
ACTATTGACTTGGCTGGTTG+TGG 0.490659 8.2:+82043675 MS.gene39388:CDS
TCCTCCAACTGCCTCACTGT+GGG 0.502459 8.2:+82044200 MS.gene39388:CDS
CTTTCCATGGTGCATGGTGT+TGG 0.509188 8.2:+82043607 MS.gene39388:CDS
AAGGAGAAGGTGATTCTTGT+CGG 0.510508 8.2:+82043783 MS.gene39388:CDS
TAATGTTACAACTATTGACT+TGG 0.521866 8.2:+82043665 MS.gene39388:CDS
TTGTGGTATCAATCCAATAC+AGG 0.522801 8.2:+82043692 MS.gene39388:CDS
GCAACTATGTTGAAATCAGC+TGG 0.524395 8.2:+82043639 MS.gene39388:CDS
ATCTCTTCCTCCCAAGGAGA+AGG 0.527605 8.2:+82043770 MS.gene39388:CDS
GGTCCCCACAGTGAGGCAGT+TGG 0.530212 8.2:-82044204 None:intergenic
ACAAGACAATTTGTTGAGAG+AGG 0.539986 8.2:+82044813 MS.gene39388:CDS
AGAGTTACCAAGGAGAGGAA+TGG 0.547036 8.2:+82044760 MS.gene39388:CDS
TATGGAATCTCTTCCTCCCA+AGG 0.551690 8.2:+82043764 MS.gene39388:CDS
CCCCACAGTGAGGCAGTTGG+AGG 0.558116 8.2:-82044201 None:intergenic
ATGGAGCTTTCCATGGTGCA+TGG 0.559504 8.2:+82043601 MS.gene39388:CDS
TTACCAAGGAGAGGAATGGA+AGG 0.564907 8.2:+82044764 MS.gene39388:CDS
CACTTGGATTATCTTTGGTG+AGG 0.571116 8.2:+82044692 MS.gene39388:CDS
GAGTACTCGTCCATATGTAA+AGG 0.579486 8.2:+82044858 MS.gene39388:CDS
GTAAAGGTGAAAGTGATAAG+TGG 0.582172 8.2:+82044874 MS.gene39388:CDS
AAACAAGAGTTACCAAGGAG+AGG 0.608738 8.2:+82044755 MS.gene39388:CDS
TTGGGATTCTCCCTGTCGAG+TGG 0.612439 8.2:-82044151 None:intergenic
GAAAGAAACAAGAGTTACCA+AGG 0.616024 8.2:+82044750 MS.gene39388:CDS
AGAATCACCTTCTCCTTGGG+AGG 0.619821 8.2:-82043777 None:intergenic
ATTATCAATATGTTTAAACA+AGG 0.622902 8.2:+82043498 None:intergenic
GATAAGTGGTTCAGATCACA+TGG 0.632899 8.2:+82044888 MS.gene39388:CDS
TATACCAACACCATGCACCA+TGG 0.635877 8.2:-82043611 None:intergenic
ATATCAATTATCTCCTGATG+AGG 0.637083 8.2:+82044248 MS.gene39388:CDS
ATCCTCCAACTGCCTCACTG+TGG 0.644239 8.2:+82044199 MS.gene39388:CDS
GCATAGAATTCCACTCGACA+GGG 0.646394 8.2:+82044141 MS.gene39388:intron
AGCAATATTTAGAATGTGTG+AGG 0.667904 8.2:-82044938 None:intergenic
CCTCCAACTGCCTCACTGTG+GGG 0.674526 8.2:+82044201 MS.gene39388:CDS
TACCAAGGAGAGGAATGGAA+GGG 0.683422 8.2:+82044765 MS.gene39388:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTATTTATGTTTTTT+TGG - chr8.2:82044507-82044526 None:intergenic 10.0%
!! AGTATATGATTGATTAATAT+GGG + chr8.2:82043971-82043990 MS.gene39388:intron 15.0%
!!! AGTTTTTTGTCATTAAAAAT+AGG - chr8.2:82044724-82044743 None:intergenic 15.0%
!!! TTGAGTTTTAATTTTAATTG+TGG + chr8.2:82044068-82044087 MS.gene39388:intron 15.0%
!!! TTTATTCTTTCATTTTTCAT+TGG + chr8.2:82043549-82043568 MS.gene39388:CDS 15.0%
!! ATCATGGTTATATATGTTTA+TGG + chr8.2:82044032-82044051 MS.gene39388:intron 20.0%
!! CAGTATATGATTGATTAATA+TGG + chr8.2:82043970-82043989 MS.gene39388:intron 20.0%
!! GATTAAAACTTGTGAAATTA+AGG - chr8.2:82043908-82043927 None:intergenic 20.0%
!! GTTAAGTGATAAAAATTTAG+AGG + chr8.2:82044419-82044438 MS.gene39388:intron 20.0%
!!! ACCATGTTATATTTTTGTTT+AGG + chr8.2:82044597-82044616 MS.gene39388:intron 20.0%
!!! CATGTTATATTTTTGTTTAG+GGG + chr8.2:82044599-82044618 MS.gene39388:intron 20.0%
!!! CCATGTTATATTTTTGTTTA+GGG + chr8.2:82044598-82044617 MS.gene39388:intron 20.0%
!!! TAATATTTTGTATTCCATCT+AGG - chr8.2:82044453-82044472 None:intergenic 20.0%
! CCCTAAACAAAAATATAACA+TGG - chr8.2:82044601-82044620 None:intergenic 25.0%
! GATTCCATAAATGTCATAAA+AGG - chr8.2:82043753-82043772 None:intergenic 25.0%
! TTGTCATTAAAAATAGGATG+TGG - chr8.2:82044718-82044737 None:intergenic 25.0%
!! AGATTAGATGACATGATTTT+GGG - chr8.2:82044228-82044247 None:intergenic 25.0%
!! TAATGTTACAACTATTGACT+TGG + chr8.2:82043665-82043684 MS.gene39388:CDS 25.0%
!! TAGATTAGATGACATGATTT+TGG - chr8.2:82044229-82044248 None:intergenic 25.0%
!! TGAACCTTTTATGACATTTA+TGG + chr8.2:82043746-82043765 MS.gene39388:CDS 25.0%
!!! TTTCACAAGTTTTAATCAAG+AGG + chr8.2:82043911-82043930 MS.gene39388:CDS 25.0%
ACATTGAAGCCATATATTGA+TGG + chr8.2:82044650-82044669 MS.gene39388:intron 30.0%
ATAGAATACAGTCTTGATCA+TGG + chr8.2:82044016-82044035 MS.gene39388:intron 30.0%
ATATCAATTATCTCCTGATG+AGG + chr8.2:82044248-82044267 MS.gene39388:CDS 30.0%
ATCACTTTCACCTTTACATA+TGG - chr8.2:82044871-82044890 None:intergenic 30.0%
CCAAAAAAAATTACCTCATC+AGG - chr8.2:82044264-82044283 None:intergenic 30.0%
CCCAATTATTCTTCTCAAAT+GGG + chr8.2:82044169-82044188 MS.gene39388:CDS 30.0%
CCCATTTGAGAAGAATAATT+GGG - chr8.2:82044172-82044191 None:intergenic 30.0%
TCCCAATTATTCTTCTCAAA+TGG + chr8.2:82044168-82044187 MS.gene39388:CDS 30.0%
TCCCATTTGAGAAGAATAAT+TGG - chr8.2:82044173-82044192 None:intergenic 30.0%
TTTGACACTTGGATTATCTT+TGG + chr8.2:82044687-82044706 MS.gene39388:CDS 30.0%
! ACTGCAACAGAAATTTTGTT+AGG - chr8.2:82043855-82043874 None:intergenic 30.0%
! AGCAATATTTAGAATGTGTG+AGG - chr8.2:82044941-82044960 None:intergenic 30.0%
! CTGCAACAGAAATTTTGTTA+GGG - chr8.2:82043854-82043873 None:intergenic 30.0%
! TAGAGGTTTTTAAACCTAGA+TGG + chr8.2:82044436-82044455 MS.gene39388:intron 30.0%
! TTTTCCATAGCAACAGATAA+GGG - chr8.2:82043828-82043847 None:intergenic 30.0%
! TTTTTCCATAGCAACAGATA+AGG - chr8.2:82043829-82043848 None:intergenic 30.0%
!! GTCAAGAGAAAGTATCAAAA+CGG - chr8.2:82044534-82044553 None:intergenic 30.0%
!! TCAAGAGAAAGTATCAAAAC+GGG - chr8.2:82044533-82044552 None:intergenic 30.0%
!!! CATCTTCTACTTTTTAACCT+AGG + chr8.2:82044345-82044364 MS.gene39388:intron 30.0%
!!! CATTTTTCATTGGTGCTAAT+GGG + chr8.2:82043559-82043578 MS.gene39388:CDS 30.0%
!!! CCTGATGAGGTAATTTTTTT+TGG + chr8.2:82044261-82044280 MS.gene39388:intron 30.0%
!!! TCATTTTTCATTGGTGCTAA+TGG + chr8.2:82043558-82043577 MS.gene39388:CDS 30.0%
AATGAAGACCACAAATAGAG+AGG + chr8.2:82044374-82044393 MS.gene39388:intron 35.0%
GAAAGAAACAAGAGTTACCA+AGG + chr8.2:82044750-82044769 MS.gene39388:CDS 35.0%
GGTATCATGTTAAGCTAACT+TGG - chr8.2:82044580-82044599 None:intergenic 35.0%
GTAAAGGTGAAAGTGATAAG+TGG + chr8.2:82044874-82044893 MS.gene39388:CDS 35.0%
TATTTGTGGTCTTCATTGAC+CGG - chr8.2:82044371-82044390 None:intergenic 35.0%
TGAATCTCTTGAACCTGTAT+TGG - chr8.2:82043708-82043727 None:intergenic 35.0%
TTGTGGTATCAATCCAATAC+AGG + chr8.2:82043692-82043711 MS.gene39388:CDS 35.0%
! ATTCTTGTCGGTCATAGTTT+TGG + chr8.2:82043795-82043814 MS.gene39388:CDS 35.0%
! CGCTTGTTACCATCAATATA+TGG - chr8.2:82044662-82044681 None:intergenic 35.0%
! TGAGAGAGGATTTTCAAATG+AGG + chr8.2:82044827-82044846 MS.gene39388:CDS 35.0%
! TGCAGTTTTTATCACTGCAT+TGG + chr8.2:82043869-82043888 MS.gene39388:CDS 35.0%
! TTGCTGATGATGAAGACTTT+AGG - chr8.2:82044793-82044812 None:intergenic 35.0%
!! ACAAGACAATTTGTTGAGAG+AGG + chr8.2:82044813-82044832 MS.gene39388:CDS 35.0%
!!! TTCTACTTTTTAACCTAGGC+CGG + chr8.2:82044349-82044368 MS.gene39388:intron 35.0%
AAACAAGAGTTACCAAGGAG+AGG + chr8.2:82044755-82044774 MS.gene39388:CDS 40.0%
AAGCACTTTGTGCTTGTTCA+TGG + chr8.2:82043582-82043601 MS.gene39388:CDS 40.0%
AAGGAGAAGGTGATTCTTGT+CGG + chr8.2:82043783-82043802 MS.gene39388:CDS 40.0%
ACAAGAATCACCTTCTCCTT+GGG - chr8.2:82043783-82043802 None:intergenic 40.0%
AGACCACAAATAGAGAGGTT+TGG + chr8.2:82044379-82044398 MS.gene39388:intron 40.0%
CACTTGGATTATCTTTGGTG+AGG + chr8.2:82044692-82044711 MS.gene39388:CDS 40.0%
CTACCAAACCTCTCTATTTG+TGG - chr8.2:82044385-82044404 None:intergenic 40.0%
GAGTACTCGTCCATATGTAA+AGG + chr8.2:82044858-82044877 MS.gene39388:CDS 40.0%
GATAAGTGGTTCAGATCACA+TGG + chr8.2:82044888-82044907 MS.gene39388:CDS 40.0%
GATACCCTTATCTGTTGCTA+TGG + chr8.2:82043821-82043840 MS.gene39388:CDS 40.0%
GCAACTATGTTGAAATCAGC+TGG + chr8.2:82043639-82043658 MS.gene39388:CDS 40.0%
! ATATTGATGGTAACAAGCGC+AGG + chr8.2:82044663-82044682 MS.gene39388:intron 40.0%
!! GCTAACTTGGTGTACACATT+TGG - chr8.2:82044567-82044586 None:intergenic 40.0%
!! GTTACAACTATTGACTTGGC+TGG + chr8.2:82043669-82043688 MS.gene39388:CDS 40.0%
!!! ATGTGTGAGGTGAGCTTTTT+TGG - chr8.2:82044928-82044947 None:intergenic 40.0%
!!! TGAGGTGAGCTTTTTTGGTT+TGG - chr8.2:82044923-82044942 None:intergenic 40.0%
!!! TTGTCGGTCATAGTTTTGGA+GGG + chr8.2:82043799-82043818 MS.gene39388:CDS 40.0%
AGAGTTACCAAGGAGAGGAA+TGG + chr8.2:82044760-82044779 MS.gene39388:CDS 45.0%
CTGTCGAGTGGAATTCTATG+CGG - chr8.2:82044142-82044161 None:intergenic 45.0%
CTTGTTCATGGAGCTTTCCA+TGG + chr8.2:82043594-82043613 MS.gene39388:CDS 45.0%
GACAAGAATCACCTTCTCCT+TGG - chr8.2:82043784-82043803 None:intergenic 45.0%
GCATAGAATTCCACTCGACA+GGG + chr8.2:82044141-82044160 MS.gene39388:intron 45.0%
TACCAAGGAGAGGAATGGAA+GGG + chr8.2:82044765-82044784 MS.gene39388:CDS 45.0%
TATACCAACACCATGCACCA+TGG - chr8.2:82043614-82043633 None:intergenic 45.0%
TATGGAATCTCTTCCTCCCA+AGG + chr8.2:82043764-82043783 MS.gene39388:CDS 45.0%
TTACCAAGGAGAGGAATGGA+AGG + chr8.2:82044764-82044783 MS.gene39388:CDS 45.0%
!! ACTATTGACTTGGCTGGTTG+TGG + chr8.2:82043675-82043694 MS.gene39388:CDS 45.0%
!! TGGTGCATGGTGTTGGTATA+AGG + chr8.2:82043614-82043633 MS.gene39388:CDS 45.0%
!!! CTTGTCGGTCATAGTTTTGG+AGG + chr8.2:82043798-82043817 MS.gene39388:CDS 45.0%
AGAATCACCTTCTCCTTGGG+AGG - chr8.2:82043780-82043799 None:intergenic 50.0%
ATCTCTTCCTCCCAAGGAGA+AGG + chr8.2:82043770-82043789 MS.gene39388:CDS 50.0%
ATGGAGCTTTCCATGGTGCA+TGG + chr8.2:82043601-82043620 MS.gene39388:CDS 50.0%
CAAGCGCAGGATTTGACACT+TGG + chr8.2:82044676-82044695 MS.gene39388:intron 50.0%
CGCATAGAATTCCACTCGAC+AGG + chr8.2:82044140-82044159 MS.gene39388:intron 50.0%
CTTTCCATGGTGCATGGTGT+TGG + chr8.2:82043607-82043626 MS.gene39388:CDS 50.0%
ATCCTCCAACTGCCTCACTG+TGG + chr8.2:82044199-82044218 MS.gene39388:CDS 55.0%
CACCCTTCCATTCCTCTCCT+TGG - chr8.2:82044770-82044789 None:intergenic 55.0%
TCCTCCAACTGCCTCACTGT+GGG + chr8.2:82044200-82044219 MS.gene39388:CDS 55.0%
TGGTCTTCATTGACCGGCCT+AGG - chr8.2:82044365-82044384 None:intergenic 55.0%
TTGGGATTCTCCCTGTCGAG+TGG - chr8.2:82044154-82044173 None:intergenic 55.0%
!! GATTTTGGGTCCCCACAGTG+AGG - chr8.2:82044214-82044233 None:intergenic 55.0%
CCTCCAACTGCCTCACTGTG+GGG + chr8.2:82044201-82044220 MS.gene39388:CDS 60.0%
CCCCACAGTGAGGCAGTTGG+AGG - chr8.2:82044204-82044223 None:intergenic 65.0%
GGTCCCCACAGTGAGGCAGT+TGG - chr8.2:82044207-82044226 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 82043507 82044972 82043507 ID=MS.gene39388
chr8.2 mRNA 82043507 82044972 82043507 ID=MS.gene39388.t1;Parent=MS.gene39388
chr8.2 exon 82043507 82043932 82043507 ID=MS.gene39388.t1.exon1;Parent=MS.gene39388.t1
chr8.2 CDS 82043507 82043932 82043507 ID=cds.MS.gene39388.t1;Parent=MS.gene39388.t1
chr8.2 exon 82044147 82044269 82044147 ID=MS.gene39388.t1.exon2;Parent=MS.gene39388.t1
chr8.2 CDS 82044147 82044269 82044147 ID=cds.MS.gene39388.t1;Parent=MS.gene39388.t1
chr8.2 exon 82044685 82044972 82044685 ID=MS.gene39388.t1.exon3;Parent=MS.gene39388.t1
chr8.2 CDS 82044685 82044972 82044685 ID=cds.MS.gene39388.t1;Parent=MS.gene39388.t1
Gene Sequence

>MS.gene39388

ATGTTTAAACAAGGAAGACACGTTGTGTTGATTCTTCTCTTCTTTATTCTTTCATTTTTCATTGGTGCTAATGGGAAGCACTTTGTGCTTGTTCATGGAGCTTTCCATGGTGCATGGTGTTGGTATAAGGTTGCAACTATGTTGAAATCAGCTGGTCATAATGTTACAACTATTGACTTGGCTGGTTGTGGTATCAATCCAATACAGGTTCAAGAGATTCATTCAATTTCACAATATTATGAACCTTTTATGACATTTATGGAATCTCTTCCTCCCAAGGAGAAGGTGATTCTTGTCGGTCATAGTTTTGGAGGGATACCCTTATCTGTTGCTATGGAAAAATTCCCTAACAAAATTTCTGTTGCAGTTTTTATCACTGCATTGGTGCTTAGTGAAAACCTTAATTTCACAAGTTTTAATCAAGAGGTACTTTGCTTTGTCTTTTTCTCACATTTATTATACACAGTATATGATTGATTAATATGGGTACTCTCTTTTTCTTGAATAACATAGAATACAGTCTTGATCATGGTTATATATGTTTATGGTACTTTAGAATTTTTGAGTTTTAATTTTAATTGTGGAAGTCTATTGTCACATTTGTTTCTAATTTATCTCATTTTGTTTTATTGCCGCATAGAATTCCACTCGACAGGGAGAATCCCAATTATTCTTCTCAAATGGGACAAATAATCCTCCAACTGCCTCACTGTGGGGACCCAAAATCATGTCATCTAATCTATATCAATTATCTCCTGATGAGGTAATTTTTTTTGGTTGTTGATTCAAATAAAAGTCAATAATTTTACTTTAATTGAATATATAGTTGATGTCTATGCATCTTCTACTTTTTAACCTAGGCCGGTCAATGAAGACCACAAATAGAGAGGTTTGGTAGTTTAAGTGATTTGAGTTAAGTGATAAAAATTTAGAGGTTTTTAAACCTAGATGGAATACAAAATATTAATTTAACAATTAATTATTAACATATGTCGTTCCAAAAAAACATAAATAAATTGATGTCCCGTTTTGATACTTTCTCTTGACATCACTAGCACCAAATGTGTACACCAAGTTAGCTTAACATGATACCATGTTATATTTTTGTTTAGGGGCATATTATATTATATATTATATTAATTTACATTGAAGCCATATATTGATGGTAACAAGCGCAGGATTTGACACTTGGATTATCTTTGGTGAGGCCACATCCTATTTTTAATGACAAAAAACTATTGTTGAAAGAAACAAGAGTTACCAAGGAGAGGAATGGAAGGGTGCCTAAAGTCTTCATCATCAGCAAACAAGACAATTTGTTGAGAGAGGATTTTCAAATGAGGATGATTGAGAGTACTCGTCCATATGTAAAGGTGAAAGTGATAAGTGGTTCAGATCACATGGTCATGTTCTCCAAACCAAAAAAGCTCACCTCACACATTCTAAATATTGCTCACAAATACTAA
Protein sequence

>MS.gene39388.t1

MFKQGRHVVLILLFFILSFFIGANGKHFVLVHGAFHGAWCWYKVATMLKSAGHNVTTIDLAGCGINPIQVQEIHSISQYYEPFMTFMESLPPKEKVILVGHSFGGIPLSVAMEKFPNKISVAVFITALVLSENLNFTSFNQENSTRQGESQLFFSNGTNNPPTASLWGPKIMSSNLYQLSPDEDLTLGLSLVRPHPIFNDKKLLLKETRVTKERNGRVPKVFIISKQDNLLREDFQMRMIESTRPYVKVKVISGSDHMVMFSKPKKLTSHILNIAHKY