AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39401.t1 MTR_4g090580 98.158 543 10 0 1 543 1 543 0.0 1106
MS.gene39401.t1 MTR_5g071250 75.885 452 109 0 92 543 50 501 0.0 723
MS.gene39401.t1 MTR_3g464380 68.750 496 149 3 54 543 9 504 0.0 687
MS.gene39401.t1 MTR_5g071250 75.291 344 85 0 92 435 50 393 0.0 540
MS.gene39401.t1 MTR_4g091240 38.611 360 200 9 105 449 51 404 7.06e-71 239
MS.gene39401.t1 MTR_4g091240 34.167 120 70 3 428 543 464 578 2.99e-12 70.1
MS.gene39401.t1 MTR_2g011730 39.595 346 193 8 105 440 51 390 1.20e-70 239
MS.gene39401.t1 MTR_2g011730 36.667 120 67 3 428 543 464 578 2.33e-14 76.6
MS.gene39401.t1 MTR_4g045997 36.579 380 220 9 81 449 37 406 3.37e-66 226
MS.gene39401.t1 MTR_4g045997 36.579 380 220 9 81 449 37 406 6.26e-66 226
MS.gene39401.t1 MTR_4g045997 36.667 120 67 3 428 543 463 577 2.56e-15 79.7
MS.gene39401.t1 MTR_4g045993 35.150 367 200 10 105 455 44 388 2.40e-63 219
MS.gene39401.t1 MTR_4g045993 35.000 120 69 3 428 543 455 569 7.84e-13 71.6
MS.gene39401.t1 MTR_4g091240 35.644 303 176 8 162 449 2 300 8.82e-51 183
MS.gene39401.t1 MTR_4g091240 34.167 120 70 3 428 543 360 474 1.97e-12 70.1
MS.gene39401.t1 MTR_0931s0010 29.108 426 263 12 122 544 254 643 1.45e-37 150
MS.gene39401.t1 MTR_8g011100 64.444 90 26 2 539 624 109 196 7.09e-27 114
MS.gene39401.t1 MTR_8g010620 64.773 88 25 2 543 626 48 133 7.18e-27 113
MS.gene39401.t1 MTR_8g010620 64.773 88 25 2 543 626 84 169 9.25e-27 113
MS.gene39401.t1 MTR_8g011140 64.286 84 24 2 543 622 67 148 4.92e-26 108
MS.gene39401.t1 MTR_8g012340 63.636 88 24 3 543 626 178 261 8.48e-23 103
MS.gene39401.t1 MTR_8g010620 50.442 113 25 3 543 626 84 194 3.85e-22 100
MS.gene39401.t1 MTR_8g023740 62.500 88 24 4 544 626 9 92 9.78e-22 92.8
MS.gene39401.t1 MTR_8g038785 61.364 88 26 3 543 626 313 396 4.78e-20 94.7
MS.gene39401.t1 MTR_8g080980 57.471 87 29 3 544 626 177 259 1.72e-19 92.8
MS.gene39401.t1 MTR_7g053470 55.682 88 31 3 543 626 172 255 1.76e-19 92.8
MS.gene39401.t1 MTR_8g094730 24.086 465 280 16 105 532 84 512 4.37e-13 72.4
MS.gene39401.t1 MTR_8g094730 24.086 465 280 16 105 532 84 512 4.65e-13 72.4
MS.gene39401.t1 MTR_8g012360 51.899 79 30 3 544 622 90 160 2.77e-12 67.8
MS.gene39401.t1 MTR_8g008640 50.633 79 33 2 552 626 110 186 3.63e-12 70.1
MS.gene39401.t1 MTR_8g010620 62.745 51 15 1 580 626 16 66 5.45e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39401.t1 AT1G07180 69.979 483 143 1 61 543 30 510 0.0 691
MS.gene39401.t1 AT2G29990 72.848 453 123 0 91 543 56 508 0.0 689
MS.gene39401.t1 AT4G21490 35.765 425 226 11 46 455 3 395 3.07e-65 224
MS.gene39401.t1 AT4G21490 33.058 121 72 4 427 543 465 580 9.30e-12 68.6
MS.gene39401.t1 AT4G21490 35.765 425 225 11 46 455 3 394 4.92e-65 224
MS.gene39401.t1 AT4G21490 33.058 121 72 4 427 543 464 579 9.12e-12 68.6
MS.gene39401.t1 AT4G28220 38.576 337 188 9 109 434 52 380 8.77e-65 221
MS.gene39401.t1 AT4G28220 38.576 337 188 9 109 434 52 380 2.94e-64 222
MS.gene39401.t1 AT4G28220 36.667 120 67 3 428 543 457 571 2.68e-13 73.2
MS.gene39401.t1 AT4G05020 41.745 321 175 7 105 417 57 373 1.15e-62 218
MS.gene39401.t1 AT4G05020 32.500 120 72 3 428 543 468 582 2.83e-11 67.0
MS.gene39401.t1 AT4G05020 41.745 321 175 7 105 417 57 373 2.82e-62 218
MS.gene39401.t1 AT2G20800 36.193 373 200 8 103 461 60 408 4.69e-56 200
MS.gene39401.t1 AT2G20800 37.500 120 66 3 428 543 468 582 1.26e-14 77.4
MS.gene39401.t1 AT3G25230 57.955 88 29 3 543 626 177 260 9.21e-21 96.7
MS.gene39401.t1 AT3G25230 57.955 88 29 3 543 626 177 260 9.44e-21 96.7
MS.gene39401.t1 AT5G48570 60.227 88 26 3 544 626 186 269 5.08e-20 94.7
MS.gene39401.t1 AT5G08740 24.861 539 302 22 33 530 20 496 1.66e-19 92.8

Find 146 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGAGTTGTTCAACAAAAT+TGG 0.171502 4.2:+21569660 MS.gene39401:CDS
GTTGTTCTGTTCCTTAATTC+TGG 0.179951 4.2:-21567643 None:intergenic
TCTATAACTCTTTGTGTGTT+AGG 0.192700 4.2:-21567714 None:intergenic
GCTGCTTGTCGGTTTCTTAA+AGG 0.225722 4.2:+21567840 MS.gene39401:CDS
CATCACTCAAAACTATCTTT+TGG 0.254195 4.2:-21569016 None:intergenic
TAGATCAACAAGTGCCTTAT+AGG 0.262816 4.2:-21569778 None:intergenic
AGAAGATCAGGTGTTGCTTT+TGG 0.283784 4.2:+21567525 MS.gene39401:CDS
CCCTTGATACCAAAAGTTAA+AGG 0.285822 4.2:-21568317 None:intergenic
TTTCAGAAAGCATCAGATTA+AGG 0.287447 4.2:-21568406 None:intergenic
GTGTTGGTACCCTTGAATTC+AGG 0.309821 4.2:+21567943 MS.gene39401:CDS
GGAGCTGAGCCTTTAACTTT+TGG 0.313907 4.2:+21568308 MS.gene39401:CDS
TTGTCACCAAATCCATATTC+AGG 0.316839 4.2:-21571533 None:intergenic
TTCCTTATGGTCTCTTGGTT+TGG 0.321151 4.2:+21569048 MS.gene39401:CDS
CTGACCGTCAAGCCTGAATA+TGG 0.327033 4.2:+21571521 MS.gene39401:CDS
GGTCTCTTGGTTTGGTCCAC+AGG 0.327590 4.2:+21569056 MS.gene39401:CDS
TTCGTATATTTCCAGAATTA+AGG 0.335626 4.2:+21567632 MS.gene39401:CDS
CTGCTTGTCGGTTTCTTAAA+GGG 0.336052 4.2:+21567841 MS.gene39401:CDS
TGTATCATGCTCAAGAAATA+AGG 0.343406 4.2:+21568372 MS.gene39401:CDS
GCAAAGGGATTGTCACTTGC+TGG 0.349729 4.2:+21569954 MS.gene39401:CDS
GTAATCTTCAACGTTGCATT+AGG 0.353164 4.2:-21571581 None:intergenic
TAGAGTTGTTCAACAAAATT+GGG 0.356038 4.2:+21569661 MS.gene39401:CDS
ACAATTTGTGTATAAACATA+TGG 0.358161 4.2:+21569734 MS.gene39401:CDS
CTGCTGCATTGTGTAGTTAT+TGG 0.365839 4.2:+21568583 MS.gene39401:CDS
CTATAACTCTTTGTGTGTTA+GGG 0.367616 4.2:-21567713 None:intergenic
TGTCATATGCAACTTTGAAT+TGG 0.368204 4.2:-21568268 None:intergenic
GGCATCAGTAGGTGCCTATA+AGG 0.371076 4.2:+21569764 MS.gene39401:CDS
ATTCTGGAAATATACGAAAA+TGG 0.382739 4.2:-21567627 None:intergenic
TTCTTTCTAGCTTCCTGCAC+TGG 0.393614 4.2:+21568026 MS.gene39401:CDS
TGAAGTTCCTTATGGTCTCT+TGG 0.393992 4.2:+21569043 MS.gene39401:CDS
ATCTTACACGTGTGCTGAGC+TGG 0.396198 4.2:+21570009 MS.gene39401:CDS
GTCTGGAGTTTGTCTTATGC+GGG 0.399394 4.2:+21568971 MS.gene39401:intron
ATGGGAAGGTAAGGAGCCTT+TGG 0.400415 4.2:-21567595 None:intergenic
GTCAAGCCTGAATATGGATT+TGG 0.407743 4.2:+21571527 MS.gene39401:CDS
GTACCGGTTGGGCTGCTTGT+CGG 0.407943 4.2:+21567829 MS.gene39401:CDS
TTTGCACTTGGGGATTGTGC+TGG 0.420564 4.2:+21569278 MS.gene39401:CDS
TTGGTTTGGTCCACAGGAGT+TGG 0.429676 4.2:+21569062 MS.gene39401:CDS
TCCTTACCTTCCCATGTAGA+TGG 0.433038 4.2:+21567603 MS.gene39401:CDS
TGATACAGAATTGGTGTTGA+TGG 0.434223 4.2:+21569224 MS.gene39401:intron
CTGAATCTTCCAAGCTCTCC+AGG 0.437706 4.2:+21569107 MS.gene39401:CDS
GTGGAAGATGTCTTTGCACT+TGG 0.442231 4.2:+21569266 MS.gene39401:CDS
GATGGAACTGAAGTTCCTTA+TGG 0.446289 4.2:+21569035 MS.gene39401:CDS
AACAAAATTGGGAAACAGAA+TGG 0.446795 4.2:+21569672 MS.gene39401:CDS
TACCTTCCACCTGGAGAGCT+TGG 0.449786 4.2:-21569116 None:intergenic
CAGCAACAGACCTGAATTCA+AGG 0.450864 4.2:-21567953 None:intergenic
AGTTCCTGTTATTCCCCTCT+TGG 0.451235 4.2:-21567676 None:intergenic
TCTAGTCCTGCATATCTTGT+CGG 0.452195 4.2:-21567765 None:intergenic
AGAGTGGTTGTTCTCGGTAC+CGG 0.453887 4.2:+21567813 MS.gene39401:CDS
ACGAAAATGGTCCATCTACA+TGG 0.454099 4.2:-21567614 None:intergenic
GGTTGTTCTCGGTACCGGTT+GGG 0.456139 4.2:+21567818 MS.gene39401:CDS
AGCTAGAAAGAAGTATGAGT+TGG 0.457476 4.2:-21568015 None:intergenic
TGGAAGATGTCTTTGCACTT+GGG 0.463774 4.2:+21569267 MS.gene39401:CDS
GTTATTGGAGGTGGTCCTAC+AGG 0.464952 4.2:+21568598 MS.gene39401:CDS
TGAGCTAAAGCTGGAAGCAC+TGG 0.467552 4.2:-21569323 None:intergenic
GTGTGCTGAGCTGGAGGAAT+CGG 0.469117 4.2:+21570018 MS.gene39401:CDS
CATATCACCAAGGAATCATA+TGG 0.470079 4.2:+21567893 MS.gene39401:CDS
AAACCGACAAGCAGCCCAAC+CGG 0.471084 4.2:-21567832 None:intergenic
AGAAGCAACCTGAGAAGATC+AGG 0.472613 4.2:+21567513 MS.gene39401:CDS
GCATCCTGTATTCTACCAAC+AGG 0.478437 4.2:-21567978 None:intergenic
GTGAAAACCATATGATTCCT+TGG 0.479965 4.2:-21567900 None:intergenic
AGTGCTTCCAGCTTTAGCTC+AGG 0.480412 4.2:+21569325 MS.gene39401:CDS
AAGCAACACCTGATCTTCTC+AGG 0.480533 4.2:-21567521 None:intergenic
TCTGCAGATGGCATCACACT+TGG 0.481006 4.2:+21569708 MS.gene39401:CDS
GACAAGCTTGTAATTGCAGC+TGG 0.484313 4.2:+21568287 MS.gene39401:CDS
TAACACACAAAGAGTTATAG+AGG 0.487725 4.2:+21567716 MS.gene39401:CDS
AAGCCTAGAGTGGTTGTTCT+CGG 0.488864 4.2:+21567807 MS.gene39401:CDS
GACCAAACCAAGAGACCATA+AGG 0.496146 4.2:-21569050 None:intergenic
TTAGGAGGAATTCCATGAGC+TGG 0.496466 4.2:-21571563 None:intergenic
TATGCAACTTTGAATTGGTA+AGG 0.497896 4.2:-21568263 None:intergenic
TGGTTGTTCTCGGTACCGGT+TGG 0.498770 4.2:+21567817 MS.gene39401:CDS
ATCTTCAACGTTGCATTAGG+AGG 0.502979 4.2:-21571578 None:intergenic
CAATTTGTGTATAAACATAT+GGG 0.504254 4.2:+21569735 MS.gene39401:CDS
GGAAGATGTCTTTGCACTTG+GGG 0.505360 4.2:+21569268 MS.gene39401:CDS
GTTTGTGTCAACTCCAGTGC+AGG 0.507620 4.2:-21568039 None:intergenic
TCTTATGCGGGGTGTGGTGA+AGG 0.508837 4.2:+21568983 MS.gene39401:CDS
CTGCATTGTGTAGTTATTGG+AGG 0.508933 4.2:+21568586 MS.gene39401:CDS
AGGCTAACCTGAGCTAAAGC+TGG 0.509934 4.2:-21569332 None:intergenic
TTAATAGACTTTGACAATGC+AGG 0.510922 4.2:-21571470 None:intergenic
GCTAGAAAGAAGTATGAGTT+GGG 0.516821 4.2:-21568014 None:intergenic
TAGGAGGAATTCCATGAGCT+GGG 0.517779 4.2:-21571562 None:intergenic
CCTACAGGAGTGGAATTTAG+TGG 0.520988 4.2:+21568613 MS.gene39401:CDS
CTCTTTAGATAATCCACCAT+TGG 0.522845 4.2:-21568240 None:intergenic
AAATCCATATTCAGGCTTGA+CGG 0.525004 4.2:-21571525 None:intergenic
TCCATCTACATGGGAAGGTA+AGG 0.529367 4.2:-21567604 None:intergenic
CATTCATGTCACACTCATTG+AGG 0.529894 4.2:+21568696 MS.gene39401:CDS
ATACTTTCATCCTTTGACGT+TGG 0.533948 4.2:+21568826 MS.gene39401:CDS
CATTGTGTAGTTATTGGAGG+TGG 0.534574 4.2:+21568589 MS.gene39401:CDS
AGTCTGGAGTTTGTCTTATG+CGG 0.535341 4.2:+21568970 MS.gene39401:intron
CTGTCGAAGGCCAACGTCAA+AGG 0.536614 4.2:-21568836 None:intergenic
TGGAAGTAATGTACATGAGA+AGG 0.538179 4.2:+21567545 MS.gene39401:CDS
CAGAATCACTTTGTCTCCCA+TGG 0.539788 4.2:-21571501 None:intergenic
TTTGTGTGTTAGGGAGCTGA+TGG 0.540218 4.2:-21567704 None:intergenic
TCTTTGGCAGAGACAACAGC+AGG 0.541549 4.2:+21570075 MS.gene39401:CDS
ATAAGGCACTTGTTGATCTA+CGG 0.542831 4.2:+21569781 MS.gene39401:CDS
GGCAGAGACAACAGCAGGAT+AGG 0.543946 4.2:+21570080 MS.gene39401:CDS
CCACTAAATTCCACTCCTGT+AGG 0.546000 4.2:-21568613 None:intergenic
GACAAGGGAAACCCAGCTCA+TGG 0.546497 4.2:+21571551 MS.gene39401:CDS
GTCTATTAAGACAGTGACCA+TGG 0.548790 4.2:+21571484 MS.gene39401:CDS
GGACTAGAGGCAACAAAACC+AGG 0.554285 4.2:+21567780 MS.gene39401:CDS
GTCTCTGCCAAAGACAAAAG+TGG 0.556692 4.2:-21570066 None:intergenic
GATGATCCGACAAGATATGC+AGG 0.562686 4.2:+21567759 MS.gene39401:CDS
AGGTCTGTTGCTGAGCCTGT+TGG 0.569427 4.2:+21567963 MS.gene39401:CDS
ACAGAATTGGTGTTGATGGA+TGG 0.570983 4.2:+21569228 MS.gene39401:intron
GTACCGAGAACAACCACTCT+AGG 0.573776 4.2:-21567810 None:intergenic
GGAAAGGCTTTGTCTGCAGA+TGG 0.574116 4.2:+21569696 MS.gene39401:CDS
TCTTATGTTATAGGATGCAA+AGG 0.575813 4.2:+21569938 MS.gene39401:intron
AATGGTCCATCTACATGGGA+AGG 0.577054 4.2:-21567609 None:intergenic
TTGTTGGCTTCAACATGTGT+TGG 0.577991 4.2:+21567927 MS.gene39401:CDS
CTGATGCTTTCTGAAAATCC+AGG 0.580189 4.2:+21568413 MS.gene39401:CDS
TGCGAGGCAGTTACCAATGG+TGG 0.582363 4.2:+21568227 MS.gene39401:CDS
GAGAGAACATTTACATCCAA+AGG 0.583362 4.2:+21567579 MS.gene39401:CDS
TGAGCCTGTTGGTAGAATAC+AGG 0.585959 4.2:+21567974 MS.gene39401:CDS
GGCTTCACATACCTTCCACC+TGG 0.586382 4.2:-21569125 None:intergenic
TTCCAAGCTCTCCAGGTGGA+AGG 0.587295 4.2:+21569114 MS.gene39401:CDS
AGTTTGTCTTATGCGGGGTG+TGG 0.589261 4.2:+21568977 MS.gene39401:CDS
TACTGCGAGGCAGTTACCAA+TGG 0.597374 4.2:+21568224 MS.gene39401:CDS
CTTATGTTATAGGATGCAAA+GGG 0.602916 4.2:+21569939 MS.gene39401:intron
TGTTGATCTACGGCAATCCA+AGG 0.602932 4.2:+21569791 MS.gene39401:CDS
TGGGAAACAGAATGGAGGAA+AGG 0.603382 4.2:+21569680 MS.gene39401:CDS
ATGGGGAGCATGGCATCAGT+AGG 0.604143 4.2:+21569753 MS.gene39401:CDS
GTATAAACATATGGGGAGCA+TGG 0.604718 4.2:+21569743 MS.gene39401:CDS
AATACAGGATGCACTAGCAA+AGG 0.606941 4.2:+21567989 MS.gene39401:CDS
ATGGATGCGTGTTCCGTCTG+TGG 0.610196 4.2:+21569247 MS.gene39401:CDS
CTATAACAATGGCATTAGCA+AGG 0.610697 4.2:+21567484 None:intergenic
TGGAGTGATGTTCAAAGTCG+AGG 0.613277 4.2:+21571433 MS.gene39401:CDS
CTCAGAGGGACCAACTCCTG+TGG 0.615481 4.2:-21569072 None:intergenic
CGAAAATGGTCCATCTACAT+GGG 0.615536 4.2:-21567613 None:intergenic
TATGCGGGGTGTGGTGAAGG+AGG 0.616063 4.2:+21568986 MS.gene39401:CDS
GACAAGATATGCAGGACTAG+AGG 0.619013 4.2:+21567767 MS.gene39401:CDS
TGGAGGTGGTCCTACAGGAG+TGG 0.621881 4.2:+21568603 MS.gene39401:CDS
TCTATTAAGACAGTGACCAT+GGG 0.627030 4.2:+21571485 MS.gene39401:CDS
GCTTCGTTGCATACTGTCGA+AGG 0.629576 4.2:-21568849 None:intergenic
GCAAAGACATCTTCCACAGA+CGG 0.636642 4.2:-21569260 None:intergenic
TTACACGTGTGCTGAGCTGG+AGG 0.642106 4.2:+21570012 MS.gene39401:CDS
TGAATATGGATTTGGTGACA+AGG 0.642976 4.2:+21571535 MS.gene39401:CDS
TCTGGAGTTTGTCTTATGCG+GGG 0.644473 4.2:+21568972 MS.gene39401:CDS
AGCAACAGACCTGAATTCAA+GGG 0.646467 4.2:-21567952 None:intergenic
ACCAGGTGAAAAGCCTAGAG+TGG 0.649954 4.2:+21567797 MS.gene39401:CDS
TGACAGGTTGCTGAAAGACA+AGG 0.650294 4.2:+21569627 MS.gene39401:intron
ACACATGTTGAAGCCAACAA+AGG 0.657554 4.2:-21567924 None:intergenic
AAAATTGGGAAACAGAATGG+AGG 0.666719 4.2:+21569675 MS.gene39401:CDS
GAATATGGATTTGGTGACAA+GGG 0.668566 4.2:+21571536 MS.gene39401:CDS
AATTTGTGTATAAACATATG+GGG 0.676076 4.2:+21569736 MS.gene39401:CDS
TGCAACGAAGCACTTAACAA+AGG 0.676652 4.2:+21568861 MS.gene39401:CDS
AATCTTCCAAGCTCTCCAGG+TGG 0.690106 4.2:+21569110 MS.gene39401:CDS
ATGTCAACAGGTCTACTGCG+AGG 0.733020 4.2:+21568211 MS.gene39401:intron
ATGTTGTGTGCATATCACCA+AGG 0.767641 4.2:+21567883 MS.gene39401:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAGATTTATATGTAAA+TGG - chr4.2:21570542-21570561 None:intergenic 10.0%
!!! ACATTTTAAATTTTAATATC+TGG - chr4.2:21569149-21569168 None:intergenic 10.0%
!! ATTATTGTAAAGTAGAAAAA+GGG + chr4.2:21570304-21570323 MS.gene39401:intron 15.0%
!!! AATTTGTTTTTCATGTTTTA+TGG + chr4.2:21570277-21570296 MS.gene39401:intron 15.0%
!!! ATTTGTTATAATAATTATGC+AGG + chr4.2:21568476-21568495 MS.gene39401:intron 15.0%
!! AAAACATGAAAAACAAATTC+TGG - chr4.2:21570276-21570295 None:intergenic 20.0%
!! AAAATAATGTGTCAAAAAAG+TGG - chr4.2:21570145-21570164 None:intergenic 20.0%
!! AAATAATGTGTCAAAAAAGT+GGG - chr4.2:21570144-21570163 None:intergenic 20.0%
!! AATGTAAAAAATTCCAATAG+AGG + chr4.2:21569439-21569458 MS.gene39401:intron 20.0%
!! AATTATGAAAAGTTAAACAG+TGG - chr4.2:21568795-21568814 None:intergenic 20.0%
!! AATTTGTGTATAAACATATG+GGG + chr4.2:21569736-21569755 MS.gene39401:CDS 20.0%
!! ACAATTTGTGTATAAACATA+TGG + chr4.2:21569734-21569753 MS.gene39401:CDS 20.0%
!! AGACAATATAGATAAATGTT+AGG - chr4.2:21569411-21569430 None:intergenic 20.0%
!! ATATCATGATATAAACAAGT+TGG + chr4.2:21570228-21570247 MS.gene39401:intron 20.0%
!! ATGTAAAAAATTCCAATAGA+GGG + chr4.2:21569440-21569459 MS.gene39401:intron 20.0%
!! CAAAATGTATCTTATGTTAT+AGG + chr4.2:21569929-21569948 MS.gene39401:intron 20.0%
!! CAATTTGTGTATAAACATAT+GGG + chr4.2:21569735-21569754 MS.gene39401:CDS 20.0%
!! CATTATTGTAAAGTAGAAAA+AGG + chr4.2:21570303-21570322 MS.gene39401:intron 20.0%
!!! AAAATGTTTTTCATTATGAC+AGG + chr4.2:21568535-21568554 MS.gene39401:intron 20.0%
!!! ACTTTTTTGACACATTATTT+TGG + chr4.2:21570144-21570163 MS.gene39401:intron 20.0%
!!! AGTATAGTTTTTCTAAAAGA+AGG - chr4.2:21568092-21568111 None:intergenic 20.0%
!!! CTGTTTAACTTTTCATAATT+AGG + chr4.2:21568795-21568814 MS.gene39401:intron 20.0%
!!! GTATAGTTTTTCTAAAAGAA+GGG - chr4.2:21568091-21568110 None:intergenic 20.0%
!!! TCAAAAGAATTTTATGGTAA+GGG - chr4.2:21571033-21571052 None:intergenic 20.0%
!!! TCTATTGGAATTTTTTACAT+TGG - chr4.2:21569440-21569459 None:intergenic 20.0%
! ACAAAACATCATAGACAATA+AGG - chr4.2:21569355-21569374 None:intergenic 25.0%
! ATAAAACACTTAGAATCACT+TGG - chr4.2:21570340-21570359 None:intergenic 25.0%
! ATGATTGAAGAAGAAATAGA+AGG + chr4.2:21571232-21571251 MS.gene39401:intron 25.0%
! CTCTTCATAGAGTTAATAAA+AGG - chr4.2:21570410-21570429 None:intergenic 25.0%
! GAAAAACTATACTGTTACAA+TGG + chr4.2:21568099-21568118 MS.gene39401:intron 25.0%
! GAAAGAAAAAAAGAATGCAT+AGG - chr4.2:21570182-21570201 None:intergenic 25.0%
! GCTTAAAACTAAACTAAGTA+TGG - chr4.2:21568453-21568472 None:intergenic 25.0%
! GTTATAATAATTATGCAGGT+GGG + chr4.2:21568480-21568499 MS.gene39401:intron 25.0%
! TAGAGTTGTTCAACAAAATT+GGG + chr4.2:21569661-21569680 MS.gene39401:CDS 25.0%
! TGTTATAATAATTATGCAGG+TGG + chr4.2:21568479-21568498 MS.gene39401:intron 25.0%
! TTCGTATATTTCCAGAATTA+AGG + chr4.2:21567632-21567651 MS.gene39401:CDS 25.0%
!! ATCACTCAAAACTATCTTTT+GGG - chr4.2:21569018-21569037 None:intergenic 25.0%
!! ATGATATAAACAAGTTGGAT+CGG + chr4.2:21570233-21570252 MS.gene39401:intron 25.0%
!! ATTCAATTTTTGTATCAGTC+TGG + chr4.2:21568954-21568973 MS.gene39401:intron 25.0%
!! ATTCTGGAAATATACGAAAA+TGG - chr4.2:21567630-21567649 None:intergenic 25.0%
!! CTCAAAAGAATTTTATGGTA+AGG - chr4.2:21571034-21571053 None:intergenic 25.0%
!!! GTCATTATTTTTTTTGCCAA+AGG + chr4.2:21568504-21568523 MS.gene39401:intron 25.0%
!!! GTGTTTTATTTATATACGAC+AGG + chr4.2:21570351-21570370 MS.gene39401:intron 25.0%
AACAAAATTGGGAAACAGAA+TGG + chr4.2:21569672-21569691 MS.gene39401:CDS 30.0%
AATGAACTATCTGATCTCAT+CGG + chr4.2:21570941-21570960 MS.gene39401:intron 30.0%
AATGATATCACAACTAGTCA+TGG - chr4.2:21571282-21571301 None:intergenic 30.0%
ATGCATAGTACTACAGAAAT+AGG + chr4.2:21569506-21569525 MS.gene39401:intron 30.0%
CTATAACTCTTTGTGTGTTA+GGG - chr4.2:21567716-21567735 None:intergenic 30.0%
CTCTAATGTCTAATTTACAC+TGG + chr4.2:21569846-21569865 MS.gene39401:intron 30.0%
CTTATGTTATAGGATGCAAA+GGG + chr4.2:21569939-21569958 MS.gene39401:intron 30.0%
GAACATATATGTACATTGCT+GGG - chr4.2:21570388-21570407 None:intergenic 30.0%
GACAGTTAATCATTGAAGAT+TGG - chr4.2:21568917-21568936 None:intergenic 30.0%
GTAGAGTTGTTCAACAAAAT+TGG + chr4.2:21569660-21569679 MS.gene39401:CDS 30.0%
GTCAAAAAATCTGATGATCA+TGG + chr4.2:21571413-21571432 MS.gene39401:CDS 30.0%
GTTGTTGAATGATACAGAAT+TGG + chr4.2:21569215-21569234 MS.gene39401:intron 30.0%
TAACACACAAAGAGTTATAG+AGG + chr4.2:21567716-21567735 MS.gene39401:CDS 30.0%
TATGCAACTTTGAATTGGTA+AGG - chr4.2:21568266-21568285 None:intergenic 30.0%
TCTATAACTCTTTGTGTGTT+AGG - chr4.2:21567717-21567736 None:intergenic 30.0%
TCTTATGTTATAGGATGCAA+AGG + chr4.2:21569938-21569957 MS.gene39401:intron 30.0%
TGTATCATGCTCAAGAAATA+AGG + chr4.2:21568372-21568391 MS.gene39401:CDS 30.0%
TGTCATATGCAACTTTGAAT+TGG - chr4.2:21568271-21568290 None:intergenic 30.0%
! AACATGAAATTTTCCAAGAG+GGG + chr4.2:21567663-21567682 MS.gene39401:CDS 30.0%
! ACAACATGAAATTTTCCAAG+AGG + chr4.2:21567661-21567680 MS.gene39401:CDS 30.0%
! CAACATGAAATTTTCCAAGA+GGG + chr4.2:21567662-21567681 MS.gene39401:CDS 30.0%
! CAATTTTACTTCATGTCAAC+AGG + chr4.2:21568199-21568218 MS.gene39401:intron 30.0%
! CATCACTCAAAACTATCTTT+TGG - chr4.2:21569019-21569038 None:intergenic 30.0%
! GTGAGCTCAAAAGAATTTTA+TGG - chr4.2:21571039-21571058 None:intergenic 30.0%
! TCACTCAAAACTATCTTTTG+GGG - chr4.2:21569017-21569036 None:intergenic 30.0%
! TGATGTTTTGTCAGTACATA+TGG + chr4.2:21569364-21569383 MS.gene39401:intron 30.0%
! TTTTGTTGAACAACTCTACA+AGG - chr4.2:21569659-21569678 None:intergenic 30.0%
!! CCTTTAACTTTTGGTATCAA+GGG + chr4.2:21568317-21568336 MS.gene39401:CDS 30.0%
!! TTTCAGAAAGCATCAGATTA+AGG - chr4.2:21568409-21568428 None:intergenic 30.0%
!!! AGTTTTTTGACAAACTCAGA+GGG - chr4.2:21569089-21569108 None:intergenic 30.0%
!!! CAAAAGATAGTTTTGAGTGA+TGG + chr4.2:21569017-21569036 MS.gene39401:CDS 30.0%
!!! TTGTTTTAACTTGTGCTGAT+AGG + chr4.2:21570617-21570636 MS.gene39401:intron 30.0%
AAAATTGGGAAACAGAATGG+AGG + chr4.2:21569675-21569694 MS.gene39401:CDS 35.0%
AAATCCATATTCAGGCTTGA+CGG - chr4.2:21571528-21571547 None:intergenic 35.0%
AGCACAAGTTAAAACAACGT+TGG - chr4.2:21570614-21570633 None:intergenic 35.0%
AGGATCCAAAGAATTCACTT+AGG - chr4.2:21570724-21570743 None:intergenic 35.0%
ATACGCGATCAAAACACAAA+AGG - chr4.2:21568891-21568910 None:intergenic 35.0%
ATACTTTCATCCTTTGACGT+TGG + chr4.2:21568826-21568845 MS.gene39401:CDS 35.0%
ATGTGTCAAAAAAGTGGGAT+AGG - chr4.2:21570139-21570158 None:intergenic 35.0%
CATATCACCAAGGAATCATA+TGG + chr4.2:21567893-21567912 MS.gene39401:CDS 35.0%
CCCTTGATACCAAAAGTTAA+AGG - chr4.2:21568320-21568339 None:intergenic 35.0%
CTCTTTAGATAATCCACCAT+TGG - chr4.2:21568243-21568262 None:intergenic 35.0%
GAAACTTTCCCATTATACCT+TGG - chr4.2:21569811-21569830 None:intergenic 35.0%
GAGAGAACATTTACATCCAA+AGG + chr4.2:21567579-21567598 MS.gene39401:CDS 35.0%
GGAACATATATGTACATTGC+TGG - chr4.2:21570389-21570408 None:intergenic 35.0%
GTAATCTTCAACGTTGCATT+AGG - chr4.2:21571584-21571603 None:intergenic 35.0%
GTGAAAACCATATGATTCCT+TGG - chr4.2:21567903-21567922 None:intergenic 35.0%
GTTGTTCTGTTCCTTAATTC+TGG - chr4.2:21567646-21567665 None:intergenic 35.0%
TAGATCAACAAGTGCCTTAT+AGG - chr4.2:21569781-21569800 None:intergenic 35.0%
TCCGTTATAGATGAAATGAG+CGG - chr4.2:21570834-21570853 None:intergenic 35.0%
TGAGATCAGATAGTTCATTG+TGG - chr4.2:21570940-21570959 None:intergenic 35.0%
TGGAAGTAATGTACATGAGA+AGG + chr4.2:21567545-21567564 MS.gene39401:CDS 35.0%
TTAAAACAACGTTGGCAATG+CGG - chr4.2:21570606-21570625 None:intergenic 35.0%
TTGTCACCAAATCCATATTC+AGG - chr4.2:21571536-21571555 None:intergenic 35.0%
TTTGAGCTCACATCAATTGT+GGG + chr4.2:21571048-21571067 MS.gene39401:intron 35.0%
! AGCTAGAAAGAAGTATGAGT+TGG - chr4.2:21568018-21568037 None:intergenic 35.0%
! ATAAGGCACTTGTTGATCTA+CGG + chr4.2:21569781-21569800 MS.gene39401:CDS 35.0%
! GCTAGAAAGAAGTATGAGTT+GGG - chr4.2:21568017-21568036 None:intergenic 35.0%
! GTTTTCTTGAACAAACTGGA+AGG + chr4.2:21569300-21569319 MS.gene39401:CDS 35.0%
! TATGGTTTTCACTCCTTTGT+TGG + chr4.2:21567911-21567930 MS.gene39401:CDS 35.0%
! TTTTGAGCTCACATCAATTG+TGG + chr4.2:21571047-21571066 MS.gene39401:intron 35.0%
! TTTTGGTATCAAGGGAGTAA+AGG + chr4.2:21568325-21568344 MS.gene39401:CDS 35.0%
!! AACATTTTCAGCTTAGCCTT+TGG - chr4.2:21568523-21568542 None:intergenic 35.0%
!! GAATATGGATTTGGTGACAA+GGG + chr4.2:21571536-21571555 MS.gene39401:CDS 35.0%
!! GCCTTTAACTTTTGGTATCA+AGG + chr4.2:21568316-21568335 MS.gene39401:CDS 35.0%
!! TAGCTCAAACTCAGTTTTAG+AGG - chr4.2:21571102-21571121 None:intergenic 35.0%
!! TGAATATGGATTTGGTGACA+AGG + chr4.2:21571535-21571554 MS.gene39401:CDS 35.0%
!! TGATACAGAATTGGTGTTGA+TGG + chr4.2:21569224-21569243 MS.gene39401:intron 35.0%
!!! AACTCAGTTTTAGAGGTAAG+TGG - chr4.2:21571095-21571114 None:intergenic 35.0%
!!! CAGTTTTTTGACAAACTCAG+AGG - chr4.2:21569090-21569109 None:intergenic 35.0%
!!! GACACATTATTTTGGTTGAG+TGG + chr4.2:21570152-21570171 MS.gene39401:intron 35.0%
AATACAGGATGCACTAGCAA+AGG + chr4.2:21567989-21568008 MS.gene39401:CDS 40.0%
ACACATGTTGAAGCCAACAA+AGG - chr4.2:21567927-21567946 None:intergenic 40.0%
ACCATAATCAACAAGCAGCT+TGG - chr4.2:21570983-21571002 None:intergenic 40.0%
ACGAAAATGGTCCATCTACA+TGG - chr4.2:21567617-21567636 None:intergenic 40.0%
ACGGCAATCCAAGGTATAAT+GGG + chr4.2:21569800-21569819 MS.gene39401:intron 40.0%
AGCAACAGACCTGAATTCAA+GGG - chr4.2:21567955-21567974 None:intergenic 40.0%
AGCATAAGTCTCGTGCTTAT+AGG + chr4.2:21570677-21570696 MS.gene39401:intron 40.0%
AGGTAATTGTGGATTCAAGC+AGG + chr4.2:21570697-21570716 MS.gene39401:intron 40.0%
ATCTTCAACGTTGCATTAGG+AGG - chr4.2:21571581-21571600 None:intergenic 40.0%
ATGTTGTGTGCATATCACCA+AGG + chr4.2:21567883-21567902 MS.gene39401:CDS 40.0%
CAGGTCCTAAGTGAATTCTT+TGG + chr4.2:21570716-21570735 MS.gene39401:intron 40.0%
CATTCATGTCACACTCATTG+AGG + chr4.2:21568696-21568715 MS.gene39401:CDS 40.0%
CATTGTGTAGTTATTGGAGG+TGG + chr4.2:21568589-21568608 MS.gene39401:CDS 40.0%
CGAAAATGGTCCATCTACAT+GGG - chr4.2:21567616-21567635 None:intergenic 40.0%
CTCGTGCTTATAGGTAATTG+TGG + chr4.2:21570686-21570705 MS.gene39401:intron 40.0%
CTGCATTGTGTAGTTATTGG+AGG + chr4.2:21568586-21568605 MS.gene39401:CDS 40.0%
CTGCTGCATTGTGTAGTTAT+TGG + chr4.2:21568583-21568602 MS.gene39401:CDS 40.0%
GAGTATACTTTCCTATGCAC+TGG + chr4.2:21569600-21569619 MS.gene39401:intron 40.0%
GATGGAACTGAAGTTCCTTA+TGG + chr4.2:21569035-21569054 MS.gene39401:CDS 40.0%
GCCGCTCATTTCATCTATAA+CGG + chr4.2:21570830-21570849 MS.gene39401:intron 40.0%
GGTATTCTTGCTCATAGCAT+AGG - chr4.2:21570579-21570598 None:intergenic 40.0%
GTATAAACATATGGGGAGCA+TGG + chr4.2:21569743-21569762 MS.gene39401:CDS 40.0%
GTCAAGCCTGAATATGGATT+TGG + chr4.2:21571527-21571546 MS.gene39401:CDS 40.0%
TAATCAACAAGCAGCTTGGA+CGG - chr4.2:21570979-21570998 None:intergenic 40.0%
TACGGCAATCCAAGGTATAA+TGG + chr4.2:21569799-21569818 MS.gene39401:intron 40.0%
TCAATTGTGGGTGTTTCAAG+AGG + chr4.2:21571060-21571079 MS.gene39401:intron 40.0%
TCTAGTCCTGCATATCTTGT+CGG - chr4.2:21567768-21567787 None:intergenic 40.0%
TGAAGTTCCTTATGGTCTCT+TGG + chr4.2:21569043-21569062 MS.gene39401:CDS 40.0%
TGCTTCGTACTTAACTGCAA+TGG - chr4.2:21571366-21571385 None:intergenic 40.0%
TGGAAGATGTCTTTGCACTT+GGG + chr4.2:21569267-21569286 MS.gene39401:CDS 40.0%
TTCCTTATGGTCTCTTGGTT+TGG + chr4.2:21569048-21569067 MS.gene39401:CDS 40.0%
! AGTCTGGAGTTTGTCTTATG+CGG + chr4.2:21568970-21568989 MS.gene39401:intron 40.0%
! ATGCTTTCTGAAAATCCAGG+TGG + chr4.2:21568416-21568435 MS.gene39401:intron 40.0%
! CTGATGCTTTCTGAAAATCC+AGG + chr4.2:21568413-21568432 MS.gene39401:CDS 40.0%
! CTTGTGCTGATAGGTAATTG+TGG + chr4.2:21570626-21570645 MS.gene39401:intron 40.0%
! GTTTTACGTGGCAGTTAACT+GGG + chr4.2:21570040-21570059 MS.gene39401:CDS 40.0%
! TCCAAGCTGCTTGTTGATTA+TGG + chr4.2:21570979-21570998 MS.gene39401:intron 40.0%
! TGCAACGAAGCACTTAACAA+AGG + chr4.2:21568861-21568880 MS.gene39401:CDS 40.0%
! TGCTTTCTGAAAATCCAGGT+GGG + chr4.2:21568417-21568436 MS.gene39401:intron 40.0%
! TTTTACGTGGCAGTTAACTG+GGG + chr4.2:21570041-21570060 MS.gene39401:CDS 40.0%
! TTTTCCAAGAGGGGAATAAC+AGG + chr4.2:21567672-21567691 MS.gene39401:CDS 40.0%
!! ACAGAATTGGTGTTGATGGA+TGG + chr4.2:21569228-21569247 MS.gene39401:intron 40.0%
!! CAGCAGGATAGGTTGAATTT+TGG + chr4.2:21570091-21570110 MS.gene39401:intron 40.0%
!! CTGCTTGTCGGTTTCTTAAA+GGG + chr4.2:21567841-21567860 MS.gene39401:CDS 40.0%
!! GTTTTGTCAGCTGGTTGATA+TGG + chr4.2:21569976-21569995 MS.gene39401:CDS 40.0%
!! TTGTTGGCTTCAACATGTGT+TGG + chr4.2:21567927-21567946 MS.gene39401:CDS 40.0%
!! TTTCATCTATAACGGACTCC+AGG + chr4.2:21570838-21570857 MS.gene39401:intron 40.0%
!!! AGAAGATCAGGTGTTGCTTT+TGG + chr4.2:21567525-21567544 MS.gene39401:CDS 40.0%
!!! GCTGGTTTTCTTGAACAAAC+TGG + chr4.2:21569296-21569315 MS.gene39401:CDS 40.0%
AAGCAACACCTGATCTTCTC+AGG - chr4.2:21567524-21567543 None:intergenic 45.0%
AAGCCTAGAGTGGTTGTTCT+CGG + chr4.2:21567807-21567826 MS.gene39401:CDS 45.0%
AATCAACAAGCAGCTTGGAC+GGG - chr4.2:21570978-21570997 None:intergenic 45.0%
AATGGTCCATCTACATGGGA+AGG - chr4.2:21567612-21567631 None:intergenic 45.0%
AGAAGCAACCTGAGAAGATC+AGG + chr4.2:21567513-21567532 MS.gene39401:CDS 45.0%
AGTTCATTGTGGTGAAGCTC+CGG - chr4.2:21570929-21570948 None:intergenic 45.0%
AGTTCCTGTTATTCCCCTCT+TGG - chr4.2:21567679-21567698 None:intergenic 45.0%
ATGGATATGAAACACCCACC+TGG - chr4.2:21568434-21568453 None:intergenic 45.0%
CACGGCTATATAAACGATCC+CGG + chr4.2:21570907-21570926 MS.gene39401:intron 45.0%
CAGAATCACTTTGTCTCCCA+TGG - chr4.2:21571504-21571523 None:intergenic 45.0%
CAGCAACAGACCTGAATTCA+AGG - chr4.2:21567956-21567975 None:intergenic 45.0%
CCACTAAATTCCACTCCTGT+AGG - chr4.2:21568616-21568635 None:intergenic 45.0%
CCTACAGGAGTGGAATTTAG+TGG + chr4.2:21568613-21568632 MS.gene39401:CDS 45.0%
CTTTGGATCCTGTTCAGAAC+CGG + chr4.2:21570733-21570752 MS.gene39401:intron 45.0%
GACAAGATATGCAGGACTAG+AGG + chr4.2:21567767-21567786 MS.gene39401:CDS 45.0%
GACAAGCTTGTAATTGCAGC+TGG + chr4.2:21568287-21568306 MS.gene39401:CDS 45.0%
GACCAAACCAAGAGACCATA+AGG - chr4.2:21569053-21569072 None:intergenic 45.0%
GATGATCCGACAAGATATGC+AGG + chr4.2:21567759-21567778 MS.gene39401:CDS 45.0%
GCAAAGACATCTTCCACAGA+CGG - chr4.2:21569263-21569282 None:intergenic 45.0%
GCATCCTGTATTCTACCAAC+AGG - chr4.2:21567981-21568000 None:intergenic 45.0%
GGAAGATGTCTTTGCACTTG+GGG + chr4.2:21569268-21569287 MS.gene39401:CDS 45.0%
GGGTGAAAAGCCCAACAAAA+CGG + chr4.2:21570767-21570786 MS.gene39401:intron 45.0%
GGTGAAAAGCCCAACAAAAC+GGG + chr4.2:21570768-21570787 MS.gene39401:intron 45.0%
GTCTCTGCCAAAGACAAAAG+TGG - chr4.2:21570069-21570088 None:intergenic 45.0%
GTGGAAGATGTCTTTGCACT+TGG + chr4.2:21569266-21569285 MS.gene39401:CDS 45.0%
TAGGAGGAATTCCATGAGCT+GGG - chr4.2:21571565-21571584 None:intergenic 45.0%
TATAGATGAAATGAGCGGCC+AGG - chr4.2:21570829-21570848 None:intergenic 45.0%
TCCATCTACATGGGAAGGTA+AGG - chr4.2:21567607-21567626 None:intergenic 45.0%
TCCTTACCTTCCCATGTAGA+TGG + chr4.2:21567603-21567622 MS.gene39401:CDS 45.0%
TGACAGGTTGCTGAAAGACA+AGG + chr4.2:21569627-21569646 MS.gene39401:intron 45.0%
TGGAGTGATGTTCAAAGTCG+AGG + chr4.2:21571433-21571452 MS.gene39401:CDS 45.0%
TGGGAAACAGAATGGAGGAA+AGG + chr4.2:21569680-21569699 MS.gene39401:CDS 45.0%
TGTTGATCTACGGCAATCCA+AGG + chr4.2:21569791-21569810 MS.gene39401:CDS 45.0%
TTAGGAGGAATTCCATGAGC+TGG - chr4.2:21571566-21571585 None:intergenic 45.0%
TTTCACCCTAGGCTATATGC+CGG - chr4.2:21570755-21570774 None:intergenic 45.0%
TTTGTGTGTTAGGGAGCTGA+TGG - chr4.2:21567707-21567726 None:intergenic 45.0%
! AACCTCATCTTCGGGTTTCA+CGG - chr4.2:21570871-21570890 None:intergenic 45.0%
! AGAGCGTTAACCTCATCTTC+GGG - chr4.2:21570879-21570898 None:intergenic 45.0%
! GGTTTTACGTGGCAGTTAAC+TGG + chr4.2:21570039-21570058 MS.gene39401:CDS 45.0%
! GTCTGGAGTTTGTCTTATGC+GGG + chr4.2:21568971-21568990 MS.gene39401:intron 45.0%
! GTGTTGGTACCCTTGAATTC+AGG + chr4.2:21567943-21567962 MS.gene39401:CDS 45.0%
! TCTGGAGTTTGTCTTATGCG+GGG + chr4.2:21568972-21568991 MS.gene39401:CDS 45.0%
! TGAGCCTGTTGGTAGAATAC+AGG + chr4.2:21567974-21567993 MS.gene39401:CDS 45.0%
! TTTGTTGGGCTTTTCACCCT+AGG - chr4.2:21570766-21570785 None:intergenic 45.0%
!! GAGAGCGTTAACCTCATCTT+CGG - chr4.2:21570880-21570899 None:intergenic 45.0%
!! GCTGCTTGTCGGTTTCTTAA+AGG + chr4.2:21567840-21567859 MS.gene39401:CDS 45.0%
!! GGAGCTGAGCCTTTAACTTT+TGG + chr4.2:21568308-21568327 MS.gene39401:CDS 45.0%
!! TCCAATAGAGGGTACTTGAC+AGG + chr4.2:21569451-21569470 MS.gene39401:intron 45.0%
!! TGGGGAACCACTTTTGTCTT+TGG + chr4.2:21570059-21570078 MS.gene39401:CDS 45.0%
!! TTCTTTCTAGCTTCCTGCAC+TGG + chr4.2:21568026-21568045 MS.gene39401:CDS 45.0%
AATCTTCCAAGCTCTCCAGG+TGG + chr4.2:21569110-21569129 MS.gene39401:CDS 50.0%
ACCAGGTGAAAAGCCTAGAG+TGG + chr4.2:21567797-21567816 MS.gene39401:CDS 50.0%
AGAGTGGTTGTTCTCGGTAC+CGG + chr4.2:21567813-21567832 MS.gene39401:CDS 50.0%
AGGCTAACCTGAGCTAAAGC+TGG - chr4.2:21569335-21569354 None:intergenic 50.0%
AGTTTGTCTTATGCGGGGTG+TGG + chr4.2:21568977-21568996 MS.gene39401:CDS 50.0%
ATCTTACACGTGTGCTGAGC+TGG + chr4.2:21570009-21570028 MS.gene39401:CDS 50.0%
ATGGGAAGGTAAGGAGCCTT+TGG - chr4.2:21567598-21567617 None:intergenic 50.0%
ATGTCAACAGGTCTACTGCG+AGG + chr4.2:21568211-21568230 MS.gene39401:intron 50.0%
CAGAACCGGCATATAGCCTA+GGG + chr4.2:21570747-21570766 MS.gene39401:intron 50.0%
CGGGATCGTTTATATAGCCG+TGG - chr4.2:21570909-21570928 None:intergenic 50.0%
CTGAATCTTCCAAGCTCTCC+AGG + chr4.2:21569107-21569126 MS.gene39401:CDS 50.0%
CTGACCGTCAAGCCTGAATA+TGG + chr4.2:21571521-21571540 MS.gene39401:CDS 50.0%
GATGAGGTTAACGCTCTCCA+CGG + chr4.2:21570882-21570901 MS.gene39401:intron 50.0%
GCCTGTCAAGTACCCTCTAT+TGG - chr4.2:21569455-21569474 None:intergenic 50.0%
GCTTCGTTGCATACTGTCGA+AGG - chr4.2:21568852-21568871 None:intergenic 50.0%
GGACTAGAGGCAACAAAACC+AGG + chr4.2:21567780-21567799 MS.gene39401:CDS 50.0%
GGCATCAGTAGGTGCCTATA+AGG + chr4.2:21569764-21569783 MS.gene39401:CDS 50.0%
GTACCGAGAACAACCACTCT+AGG - chr4.2:21567813-21567832 None:intergenic 50.0%
GTTATTGGAGGTGGTCCTAC+AGG + chr4.2:21568598-21568617 MS.gene39401:CDS 50.0%
GTTCATTGTGGTGAAGCTCC+GGG - chr4.2:21570928-21570947 None:intergenic 50.0%
GTTTATATAGCCGTGGTCCG+TGG - chr4.2:21570902-21570921 None:intergenic 50.0%
GTTTGTGTCAACTCCAGTGC+AGG - chr4.2:21568042-21568061 None:intergenic 50.0%
TACTGCGAGGCAGTTACCAA+TGG + chr4.2:21568224-21568243 MS.gene39401:CDS 50.0%
TCAGAACCGGCATATAGCCT+AGG + chr4.2:21570746-21570765 MS.gene39401:intron 50.0%
TCTGCAGATGGCATCACACT+TGG + chr4.2:21569708-21569727 MS.gene39401:CDS 50.0%
TCTTTGGCAGAGACAACAGC+AGG + chr4.2:21570075-21570094 MS.gene39401:CDS 50.0%
TTTGCACTTGGGGATTGTGC+TGG + chr4.2:21569278-21569297 MS.gene39401:CDS 50.0%
! ACCACTCTAGGCTTTTCACC+TGG - chr4.2:21567801-21567820 None:intergenic 50.0%
! AGGACGTACACCCGTTTTGT+TGG - chr4.2:21570781-21570800 None:intergenic 50.0%
! AGTGCTTCCAGCTTTAGCTC+AGG + chr4.2:21569325-21569344 MS.gene39401:CDS 50.0%
! GCAAAGGGATTGTCACTTGC+TGG + chr4.2:21569954-21569973 MS.gene39401:CDS 50.0%
! GGAAAGGCTTTGTCTGCAGA+TGG + chr4.2:21569696-21569715 MS.gene39401:CDS 50.0%
! TGAGCTAAAGCTGGAAGCAC+TGG - chr4.2:21569326-21569345 None:intergenic 50.0%
!! CTGGAGGAATCGGTTTTACG+TGG + chr4.2:21570028-21570047 MS.gene39401:CDS 50.0%
!! GCTATATGCCGGTTCTGAAC+AGG - chr4.2:21570744-21570763 None:intergenic 50.0%
!! GGACGTACACCCGTTTTGTT+GGG - chr4.2:21570780-21570799 None:intergenic 50.0%
!! TTGGTTTGGTCCACAGGAGT+TGG + chr4.2:21569062-21569081 MS.gene39401:CDS 50.0%
!!! CACTTGCTGGTTTTGTCAGC+TGG + chr4.2:21569967-21569986 MS.gene39401:CDS 50.0%
AAACCGACAAGCAGCCCAAC+CGG - chr4.2:21567835-21567854 None:intergenic 55.0%
ACAACGTTGGCAATGCGGCA+AGG - chr4.2:21570601-21570620 None:intergenic 55.0%
AGGTCTGTTGCTGAGCCTGT+TGG + chr4.2:21567963-21567982 MS.gene39401:CDS 55.0%
ATGGATGCGTGTTCCGTCTG+TGG + chr4.2:21569247-21569266 MS.gene39401:CDS 55.0%
CAACGTTGGCAATGCGGCAA+GGG - chr4.2:21570600-21570619 None:intergenic 55.0%
CCTGTCAGTGACCAGTGCAT+AGG - chr4.2:21569614-21569633 None:intergenic 55.0%
CTGTCGAAGGCCAACGTCAA+AGG - chr4.2:21568839-21568858 None:intergenic 55.0%
GACAAGGGAAACCCAGCTCA+TGG + chr4.2:21571551-21571570 MS.gene39401:CDS 55.0%
GAGCACACTGCGTTCAATCC+TGG + chr4.2:21570808-21570827 MS.gene39401:intron 55.0%
GGCAGAGACAACAGCAGGAT+AGG + chr4.2:21570080-21570099 MS.gene39401:CDS 55.0%
GGCTTCACATACCTTCCACC+TGG - chr4.2:21569128-21569147 None:intergenic 55.0%
GTGTGCTGAGCTGGAGGAAT+CGG + chr4.2:21570018-21570037 MS.gene39401:CDS 55.0%
TACCTTCCACCTGGAGAGCT+TGG - chr4.2:21569119-21569138 None:intergenic 55.0%
TCTTATGCGGGGTGTGGTGA+AGG + chr4.2:21568983-21569002 MS.gene39401:CDS 55.0%
TGCGAGGCAGTTACCAATGG+TGG + chr4.2:21568227-21568246 MS.gene39401:CDS 55.0%
TTAACGCTCTCCACGGACCA+CGG + chr4.2:21570889-21570908 MS.gene39401:intron 55.0%
TTACACGTGTGCTGAGCTGG+AGG + chr4.2:21570012-21570031 MS.gene39401:CDS 55.0%
TTCCAAGCTCTCCAGGTGGA+AGG + chr4.2:21569114-21569133 MS.gene39401:CDS 55.0%
! ATGGGGAGCATGGCATCAGT+AGG + chr4.2:21569753-21569772 MS.gene39401:CDS 55.0%
! CCTATGCACTGGTCACTGAC+AGG + chr4.2:21569611-21569630 MS.gene39401:intron 55.0%
!! GGTCTCTTGGTTTGGTCCAC+AGG + chr4.2:21569056-21569075 MS.gene39401:CDS 55.0%
!! GGTTGTTCTCGGTACCGGTT+GGG + chr4.2:21567818-21567837 MS.gene39401:CDS 55.0%
!! TGGTTGTTCTCGGTACCGGT+TGG + chr4.2:21567817-21567836 MS.gene39401:CDS 55.0%
ACGCAGTGTGCTCCTATGCG+AGG - chr4.2:21570801-21570820 None:intergenic 60.0%
ACGGGTGTACGTCCTCGCAT+AGG + chr4.2:21570786-21570805 MS.gene39401:intron 60.0%
CGCCGTGAAACCCGAAGATG+AGG + chr4.2:21570866-21570885 MS.gene39401:intron 60.0%
CTCAGAGGGACCAACTCCTG+TGG - chr4.2:21569075-21569094 None:intergenic 60.0%
GGGTTTCACGGCGCTAATCC+TGG - chr4.2:21570859-21570878 None:intergenic 60.0%
TATGCGGGGTGTGGTGAAGG+AGG + chr4.2:21568986-21569005 MS.gene39401:CDS 60.0%
TGGAGGTGGTCCTACAGGAG+TGG + chr4.2:21568603-21568622 MS.gene39401:CDS 60.0%
!! GTACCGGTTGGGCTGCTTGT+CGG + chr4.2:21567829-21567848 MS.gene39401:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 21567492 21571622 21567492 ID=MS.gene39401
chr4.2 mRNA 21567492 21571622 21567492 ID=MS.gene39401.t1;Parent=MS.gene39401
chr4.2 exon 21567492 21568070 21567492 ID=MS.gene39401.t1.exon1;Parent=MS.gene39401.t1
chr4.2 CDS 21567492 21568070 21567492 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21568221 21568434 21568221 ID=MS.gene39401.t1.exon2;Parent=MS.gene39401.t1
chr4.2 CDS 21568221 21568434 21568221 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21568557 21568717 21568557 ID=MS.gene39401.t1.exon3;Parent=MS.gene39401.t1
chr4.2 CDS 21568557 21568717 21568557 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21568817 21568882 21568817 ID=MS.gene39401.t1.exon4;Parent=MS.gene39401.t1
chr4.2 CDS 21568817 21568882 21568817 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21568972 21569135 21568972 ID=MS.gene39401.t1.exon5;Parent=MS.gene39401.t1
chr4.2 CDS 21568972 21569135 21568972 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21569232 21569346 21569232 ID=MS.gene39401.t1.exon6;Parent=MS.gene39401.t1
chr4.2 CDS 21569232 21569346 21569232 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21569633 21569812 21569633 ID=MS.gene39401.t1.exon7;Parent=MS.gene39401.t1
chr4.2 CDS 21569633 21569812 21569633 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21569951 21570101 21569951 ID=MS.gene39401.t1.exon8;Parent=MS.gene39401.t1
chr4.2 CDS 21569951 21570101 21569951 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
chr4.2 exon 21571372 21571622 21571372 ID=MS.gene39401.t1.exon9;Parent=MS.gene39401.t1
chr4.2 CDS 21571372 21571622 21571372 ID=cds.MS.gene39401.t1;Parent=MS.gene39401.t1
Gene Sequence

>MS.gene39401

ATGGCATTAGCAAGGATTGCTAGAAGCAACCTGAGAAGATCAGGTGTTGCTTTTGGAAGTAATGTACATGAGAAGGATATGTTCAATGAGAGAACATTTACATCCAAAGGCTCCTTACCTTCCCATGTAGATGGACCATTTTCGTATATTTCCAGAATTAAGGAACAGAACAACATGAAATTTTCCAAGAGGGGAATAACAGGAACTGCATTCCATCAGCTCCCTAACACACAAAGAGTTATAGAGGAATCTGAGTCAGAGTTCGAAGATGATCCGACAAGATATGCAGGACTAGAGGCAACAAAACCAGGTGAAAAGCCTAGAGTGGTTGTTCTCGGTACCGGTTGGGCTGCTTGTCGGTTTCTTAAAGGGATAGACACGAGAATTTATGATGTTGTGTGCATATCACCAAGGAATCATATGGTTTTCACTCCTTTGTTGGCTTCAACATGTGTTGGTACCCTTGAATTCAGGTCTGTTGCTGAGCCTGTTGGTAGAATACAGGATGCACTAGCAAAGGAACCCAACTCATACTTCTTTCTAGCTTCCTGCACTGGAGTTGACACAAACAAACATGAAGTGAGTACAATTATTTACCCTTCTTTTAGAAAAACTATACTGTTACAATGGAATGTTCAATGTGAAAAAATTGAAAGACTAATAAATTTGTGTTTGTACAAAGTTTTTTTTCTATTGAAATGCTTAGTCAATTTTACTTCATGTCAACAGGTCTACTGCGAGGCAGTTACCAATGGTGGATTATCTAAAGAGCCTTACCAATTCAAAGTTGCATATGACAAGCTTGTAATTGCAGCTGGAGCTGAGCCTTTAACTTTTGGTATCAAGGGAGTAAAGGAACATGCTTTTTTTCTTCGTGAAGTGTATCATGCTCAAGAAATAAGGAAGAGACTTCTCCTTAATCTGATGCTTTCTGAAAATCCAGGTGGGTGTTTCATATCCATACTTAGTTTAGTTTTAAGCTTAATTTGTTATAATAATTATGCAGGTGGGTGTCATTATTTTTTTTGCCAAAGGCTAAGCTGAAAATGTTTTTCATTATGACAGGCATATCAGAAGAAGAAAAGAAACGTCTGCTGCATTGTGTAGTTATTGGAGGTGGTCCTACAGGAGTGGAATTTAGTGGTGAATTGAGTGATTTCATCACAAGAGATGTTCGTGAGCGCTATACTCATGTTAAAGATTACATTCATGTCACACTCATTGAGGTATCTAATCTAATTTATATATTGAAGTCTATTTTGTGTGCTGATGTTGTTAAATATATTAACTGTGTATTTAACCACTGTTTAACTTTTCATAATTAGGCAAATGAAATACTTTCATCCTTTGACGTTGGCCTTCGACAGTATGCAACGAAGCACTTAACAAAGGTAAACCTTTTGTGTTTTGATCGCGTATATACCAATCTTCAATGATTAACTGTCAAGTATGAGACTAAGACATTCAATTTTTGTATCAGTCTGGAGTTTGTCTTATGCGGGGTGTGGTGAAGGAGGTGCATCCCCAAAAGATAGTTTTGAGTGATGGAACTGAAGTTCCTTATGGTCTCTTGGTTTGGTCCACAGGAGTTGGTCCCTCTGAGTTTGTCAAAAAACTGAATCTTCCAAGCTCTCCAGGTGGAAGGTATGTGAAGCCAGATATTAAAATTTAAAATGTTTCAATCTTTTGCTCATTTTATTTATGTGATTTTAATTTAACTAATGTTGTTGAATGATACAGAATTGGTGTTGATGGATGGATGCGTGTTCCGTCTGTGGAAGATGTCTTTGCACTTGGGGATTGTGCTGGTTTTCTTGAACAAACTGGAAGGCCAGTGCTTCCAGCTTTAGCTCAGGTTAGCCTTATTGTCTATGATGTTTTGTCAGTACATATGGATAAAGTGATCAAGAAAAAAACCTAACATTTATCTATATTGTCTTTTAATCCAATGTAAAAAATTCCAATAGAGGGTACTTGACAGGCTAATGAATGAGTAATACTAATGACATAATATATGCATAGTACTACAGAAATAGGAAAAAGCTTCTATTTCATTGAAAAACAAGCAAAACATCAATTGTTGTCTCTATGTTCTATTTACTGATGAAGAGTATACTTTCCTATGCACTGGTCACTGACAGGTTGCTGAAAGACAAGGAAAGTTCCTTGTAGAGTTGTTCAACAAAATTGGGAAACAGAATGGAGGAAAGGCTTTGTCTGCAGATGGCATCACACTTGGAGAACAATTTGTGTATAAACATATGGGGAGCATGGCATCAGTAGGTGCCTATAAGGCACTTGTTGATCTACGGCAATCCAAGGTATAATGGGAAAGTTTCTATCTCTAGTTCTATCTCTAATGTCTAATTTACACTGGAGTTTAATGAAAAGAAACAGAAATTAGCAAACTCAAAAGACTGCTTCTGATTTTGTGCTGCAAAATGTATCTTATGTTATAGGATGCAAAGGGATTGTCACTTGCTGGTTTTGTCAGCTGGTTGATATGGCGTTCTGCATATCTTACACGTGTGCTGAGCTGGAGGAATCGGTTTTACGTGGCAGTTAACTGGGGAACCACTTTTGTCTTTGGCAGAGACAACAGCAGGATAGGTTGAATTTTGGCTGCAACATTGTAACTACAAAACCTATCCCACTTTTTTGACACATTATTTTGGTTGAGTGGTCAGCCTATGCATTCTTTTTTTCTTTCTCTGTATTCACTATAAAACTTATATCATATCATGATATAAACAAGTTGGATCGGATAAATATGATATTTTACCAGAATTTGTTTTTCATGTTTTATGGATTCATTATTGTAAAGTAGAAAAAGGGTAAAACAAGACCAAGTGATTCTAAGTGTTTTATTTATATACGACAGGAAGACATTTTTCCCAGCAATGTACATATATGTTCCTTTTATTAACTCTATGAAGAGTATTTAAAACTATAGAAAATTGAAATTAATTGAAATATCAAGAGTATTTAAAACTATGTACAAATTTATTAACTCTATGAAGAGTATTAACTCTATGTACATATATGTTCCATTTACATATAAATCTAAATTAAAATAAAGTTCATCCTATGCTATGAGCAAGAATACCCTTGCCGCATTGCCAACGTTGTTTTAACTTGTGCTGATAGGTAATTGTGGATTGTGCAATGACTTTTTTAATAGCTTAAGCATAAGTCTCGTGCTTATAGGTAATTGTGGATTCAAGCAGGTCCTAAGTGAATTCTTTGGATCCTGTTCAGAACCGGCATATAGCCTAGGGTGAAAAGCCCAACAAAACGGGTGTACGTCCTCGCATAGGAGCACACTGCGTTCAATCCTGGCCGCTCATTTCATCTATAACGGACTCCAGGATTAGCGCCGTGAAACCCGAAGATGAGGTTAACGCTCTCCACGGACCACGGCTATATAAACGATCCCGGAGCTTCACCACAATGAACTATCTGATCTCATCGGACAGATCAGATCCCGTCCAAGCTGCTTGTTGATTATGGTCAAATTCTCTTGTCGCTATCATCATATCCCTTACCATAAAATTCTTTTGAGCTCACATCAATTGTGGGTGTTTCAAGAGGTTGATTACACCACTTACCTCTAAAACTGAGTTTGAGCTATACGTCTAAAACTGAAGAAAAAACATAAAATCGAAGATAATCGAAGAACATTTTTCAAACACAAAGCAACAAAAAGAAACTGAAGAAAAAACATGAAAACTCGTAAAATCATGATTGAAGAAGAAATAGAAGGATTTCATCGAGATTGATCACACATCCATGACTAGTTGTGATATCATTCATATAAAGATCTATAATGAGATAAAAAAGCATTTTTTTATTTTTTATTTTAACTATTAATCCATTGCAGTTAAGTACGAAGCACGTCTTCTTGATGATCATGAAACGCTTGTCAAAAAATCTGATGATCATGGAGTGATGTTCAAAGTCGAGGACAGTGATTTTTGTCCTGCATTGTCAAAGTCTATTAAGACAGTGACCATGGGAGACAAAGTGATTCTGACCGTCAAGCCTGAATATGGATTTGGTGACAAGGGAAACCCAGCTCATGGAATTCCTCCTAATGCAACGTTGAAGATTACTCTCGAGTTACTTTCTTAG
Protein sequence

>MS.gene39401.t1

MALARIARSNLRRSGVAFGSNVHEKDMFNERTFTSKGSLPSHVDGPFSYISRIKEQNNMKFSKRGITGTAFHQLPNTQRVIEESESEFEDDPTRYAGLEATKPGEKPRVVVLGTGWAACRFLKGIDTRIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVGRIQDALAKEPNSYFFLASCTGVDTNKHEVYCEAVTNGGLSKEPYQFKVAYDKLVIAAGAEPLTFGIKGVKEHAFFLREVYHAQEIRKRLLLNLMLSENPGISEEEKKRLLHCVVIGGGPTGVEFSGELSDFITRDVRERYTHVKDYIHVTLIEANEILSSFDVGLRQYATKHLTKSGVCLMRGVVKEVHPQKIVLSDGTEVPYGLLVWSTGVGPSEFVKKLNLPSSPGGRIGVDGWMRVPSVEDVFALGDCAGFLEQTGRPVLPALAQVAERQGKFLVELFNKIGKQNGGKALSADGITLGEQFVYKHMGSMASVGAYKALVDLRQSKDAKGLSLAGFVSWLIWRSAYLTRVLSWRNRFYVAVNWGTTFVFGRDNSRIVKYEARLLDDHETLVKKSDDHGVMFKVEDSDFCPALSKSIKTVTMGDKVILTVKPEYGFGDKGNPAHGIPPNATLKITLELLS