Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39677.t1 | XP_003626788.2 | 85.3 | 129 | 12 | 1 | 1 | 122 | 1 | 129 | 1.80E-56 | 228.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39677.t1 | Q9LTH7 | 49.6 | 119 | 48 | 2 | 15 | 122 | 12 | 129 | 6.8e-28 | 124.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39677.t1 | G7LCL3 | 85.3 | 129 | 12 | 1 | 1 | 122 | 1 | 129 | 1.3e-56 | 228.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene39677 | 0.800374 | 1.49E-48 | -1.69E-46 |
MS.gene051860 | MS.gene39677 | 0.800518 | 1.39E-48 | -1.69E-46 |
MS.gene054010 | MS.gene39677 | 0.803273 | 3.77E-49 | -1.69E-46 |
MS.gene054011 | MS.gene39677 | 0.809825 | 1.56E-50 | -1.69E-46 |
MS.gene054012 | MS.gene39677 | 0.813853 | 2.07E-51 | -1.69E-46 |
MS.gene054013 | MS.gene39677 | 0.812933 | 3.30E-51 | -1.69E-46 |
MS.gene054183 | MS.gene39677 | 0.815335 | 9.75E-52 | -1.69E-46 |
MS.gene055604 | MS.gene39677 | 0.828832 | 7.22E-55 | -1.69E-46 |
MS.gene059420 | MS.gene39677 | 0.807424 | 5.09E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39677.t1 | MTR_8g009090 | 85.271 | 129 | 12 | 1 | 1 | 122 | 1 | 129 | 3.17e-74 | 224 |
MS.gene39677.t1 | MTR_8g008930 | 85.039 | 127 | 12 | 1 | 1 | 120 | 1 | 127 | 2.20e-72 | 220 |
MS.gene39677.t1 | MTR_8g028435 | 81.395 | 129 | 17 | 1 | 1 | 122 | 1 | 129 | 1.09e-70 | 216 |
MS.gene39677.t1 | MTR_8g009110 | 81.538 | 130 | 17 | 1 | 1 | 123 | 1 | 130 | 2.03e-70 | 215 |
MS.gene39677.t1 | MTR_8g009160 | 80.620 | 129 | 18 | 1 | 1 | 122 | 1 | 129 | 6.80e-70 | 214 |
MS.gene39677.t1 | MTR_8g009170 | 80.620 | 129 | 18 | 1 | 1 | 122 | 1 | 129 | 1.04e-69 | 211 |
MS.gene39677.t1 | MTR_8g009170 | 80.620 | 129 | 18 | 1 | 1 | 122 | 1 | 129 | 4.69e-69 | 211 |
MS.gene39677.t1 | MTR_8g009150 | 77.519 | 129 | 22 | 1 | 1 | 122 | 1 | 129 | 2.57e-65 | 201 |
MS.gene39677.t1 | MTR_8g009120 | 77.519 | 129 | 22 | 1 | 1 | 122 | 1 | 129 | 6.19e-65 | 201 |
MS.gene39677.t1 | MTR_4g117880 | 73.438 | 128 | 27 | 1 | 1 | 121 | 1 | 128 | 8.69e-64 | 198 |
MS.gene39677.t1 | MTR_2g069090 | 67.241 | 116 | 27 | 2 | 17 | 122 | 22 | 136 | 1.05e-46 | 154 |
MS.gene39677.t1 | MTR_2g069210 | 61.069 | 131 | 39 | 3 | 2 | 122 | 4 | 132 | 1.90e-44 | 148 |
MS.gene39677.t1 | MTR_2g069190 | 64.035 | 114 | 30 | 2 | 19 | 122 | 24 | 136 | 4.36e-43 | 145 |
MS.gene39677.t1 | MTR_2g069300 | 58.621 | 116 | 37 | 2 | 17 | 122 | 8 | 122 | 6.06e-40 | 136 |
MS.gene39677.t1 | MTR_1g043770 | 57.143 | 112 | 39 | 2 | 19 | 122 | 11 | 121 | 7.90e-39 | 132 |
MS.gene39677.t1 | MTR_1g043770 | 57.143 | 112 | 39 | 2 | 19 | 122 | 11 | 121 | 1.89e-38 | 132 |
MS.gene39677.t1 | MTR_8g009080 | 54.331 | 127 | 46 | 3 | 6 | 122 | 38 | 162 | 3.51e-36 | 126 |
MS.gene39677.t1 | MTR_1g043760 | 55.652 | 115 | 41 | 2 | 17 | 122 | 9 | 122 | 3.84e-36 | 126 |
MS.gene39677.t1 | MTR_8g009080 | 54.331 | 127 | 46 | 3 | 6 | 122 | 38 | 162 | 5.56e-36 | 125 |
MS.gene39677.t1 | MTR_8g009080 | 54.331 | 127 | 46 | 3 | 6 | 122 | 38 | 162 | 1.51e-35 | 125 |
MS.gene39677.t1 | MTR_1g044105 | 50.000 | 120 | 45 | 2 | 17 | 122 | 9 | 127 | 3.46e-35 | 119 |
MS.gene39677.t1 | MTR_1g043775 | 53.043 | 115 | 44 | 2 | 17 | 122 | 9 | 122 | 1.44e-33 | 119 |
MS.gene39677.t1 | MTR_1g043810 | 50.435 | 115 | 47 | 2 | 17 | 122 | 9 | 122 | 3.36e-33 | 118 |
MS.gene39677.t1 | MTR_1g093140 | 47.581 | 124 | 46 | 4 | 17 | 122 | 19 | 141 | 3.56e-33 | 119 |
MS.gene39677.t1 | MTR_1g043775 | 53.043 | 115 | 44 | 2 | 17 | 122 | 9 | 122 | 3.63e-33 | 119 |
MS.gene39677.t1 | MTR_1g043810 | 50.435 | 115 | 47 | 2 | 17 | 122 | 9 | 122 | 8.17e-33 | 118 |
MS.gene39677.t1 | MTR_7g056347 | 47.826 | 115 | 50 | 2 | 17 | 122 | 22 | 135 | 1.21e-32 | 117 |
MS.gene39677.t1 | MTR_7g078010 | 47.826 | 115 | 50 | 2 | 17 | 122 | 22 | 135 | 1.58e-32 | 116 |
MS.gene39677.t1 | MTR_1g093120 | 47.059 | 119 | 49 | 4 | 17 | 122 | 18 | 135 | 2.26e-32 | 117 |
MS.gene39677.t1 | MTR_4g119410 | 45.528 | 123 | 54 | 3 | 12 | 122 | 14 | 135 | 4.82e-32 | 116 |
MS.gene39677.t1 | MTR_7g078010 | 47.826 | 115 | 50 | 2 | 17 | 122 | 22 | 135 | 7.81e-32 | 115 |
MS.gene39677.t1 | MTR_8g006930 | 46.957 | 115 | 51 | 2 | 17 | 122 | 22 | 135 | 2.63e-31 | 114 |
MS.gene39677.t1 | MTR_8g041620 | 51.282 | 117 | 46 | 2 | 17 | 122 | 22 | 138 | 2.35e-30 | 112 |
MS.gene39677.t1 | MTR_1g093110 | 43.802 | 121 | 52 | 3 | 17 | 122 | 19 | 138 | 2.68e-30 | 111 |
MS.gene39677.t1 | MTR_8g063070 | 43.966 | 116 | 55 | 2 | 16 | 122 | 21 | 135 | 4.05e-30 | 111 |
MS.gene39677.t1 | MTR_4g099380 | 47.826 | 115 | 43 | 3 | 19 | 122 | 129 | 237 | 1.11e-29 | 108 |
MS.gene39677.t1 | MTR_8g041600 | 49.573 | 117 | 48 | 2 | 17 | 122 | 22 | 138 | 1.13e-29 | 108 |
MS.gene39677.t1 | MTR_2g068950 | 42.105 | 133 | 64 | 3 | 1 | 122 | 1 | 131 | 2.40e-29 | 108 |
MS.gene39677.t1 | MTR_8g062600 | 44.000 | 125 | 57 | 4 | 10 | 122 | 12 | 135 | 2.70e-29 | 108 |
MS.gene39677.t1 | MTR_2g068960 | 43.609 | 133 | 62 | 4 | 1 | 122 | 1 | 131 | 5.72e-29 | 108 |
MS.gene39677.t1 | MTR_8g041600 | 49.573 | 117 | 48 | 2 | 17 | 122 | 22 | 138 | 6.27e-29 | 108 |
MS.gene39677.t1 | MTR_4g024660 | 42.276 | 123 | 58 | 3 | 12 | 122 | 14 | 135 | 1.58e-28 | 107 |
MS.gene39677.t1 | MTR_7g056393 | 43.478 | 115 | 55 | 2 | 17 | 122 | 22 | 135 | 7.17e-27 | 102 |
MS.gene39677.t1 | MTR_2g069010 | 38.686 | 137 | 68 | 4 | 1 | 122 | 2 | 137 | 1.26e-26 | 102 |
MS.gene39677.t1 | MTR_2g069020 | 42.735 | 117 | 55 | 2 | 17 | 122 | 20 | 135 | 2.42e-26 | 101 |
MS.gene39677.t1 | MTR_2g069020 | 42.735 | 117 | 55 | 2 | 17 | 122 | 20 | 135 | 4.10e-26 | 100 |
MS.gene39677.t1 | MTR_7g029655 | 43.333 | 120 | 50 | 2 | 17 | 122 | 17 | 132 | 1.67e-25 | 99.0 |
MS.gene39677.t1 | MTR_0032s0040 | 47.154 | 123 | 44 | 3 | 17 | 122 | 17 | 135 | 3.76e-25 | 97.8 |
MS.gene39677.t1 | MTR_7g056370 | 37.069 | 116 | 63 | 2 | 18 | 124 | 2 | 116 | 4.88e-24 | 92.4 |
MS.gene39677.t1 | MTR_1g070185 | 41.593 | 113 | 59 | 1 | 17 | 122 | 23 | 135 | 1.34e-23 | 93.6 |
MS.gene39677.t1 | MTR_8g469400 | 38.462 | 130 | 55 | 4 | 5 | 122 | 7 | 123 | 1.15e-21 | 88.2 |
MS.gene39677.t1 | MTR_1g032250 | 39.130 | 115 | 55 | 2 | 19 | 122 | 28 | 138 | 1.73e-21 | 88.2 |
MS.gene39677.t1 | MTR_7g105070 | 39.474 | 114 | 57 | 2 | 19 | 122 | 15 | 126 | 1.96e-21 | 87.8 |
MS.gene39677.t1 | MTR_1g032140 | 36.923 | 130 | 67 | 2 | 4 | 122 | 6 | 131 | 8.46e-21 | 85.9 |
MS.gene39677.t1 | MTR_2g069070 | 41.905 | 105 | 51 | 2 | 17 | 121 | 22 | 116 | 8.86e-21 | 83.2 |
MS.gene39677.t1 | MTR_1g032220 | 37.391 | 115 | 57 | 2 | 19 | 122 | 28 | 138 | 3.71e-20 | 84.3 |
MS.gene39677.t1 | MTR_2g069060 | 42.453 | 106 | 51 | 2 | 17 | 122 | 22 | 117 | 7.77e-20 | 83.2 |
MS.gene39677.t1 | MTR_1g043840 | 57.627 | 59 | 25 | 0 | 64 | 122 | 256 | 314 | 7.94e-19 | 80.5 |
MS.gene39677.t1 | MTR_7g068650 | 34.783 | 115 | 61 | 2 | 19 | 119 | 6 | 120 | 8.92e-18 | 77.8 |
MS.gene39677.t1 | MTR_2g069060 | 50.000 | 70 | 34 | 1 | 53 | 122 | 27 | 95 | 3.47e-16 | 72.4 |
MS.gene39677.t1 | MTR_2g068850 | 39.394 | 99 | 47 | 3 | 27 | 116 | 21 | 115 | 3.49e-16 | 71.6 |
MS.gene39677.t1 | MTR_2g068840 | 36.364 | 132 | 64 | 6 | 1 | 123 | 1 | 121 | 3.41e-15 | 70.5 |
MS.gene39677.t1 | MTR_3g091350 | 34.286 | 105 | 58 | 2 | 26 | 119 | 21 | 125 | 4.13e-15 | 70.5 |
MS.gene39677.t1 | MTR_2g068800 | 39.560 | 91 | 42 | 3 | 27 | 108 | 21 | 107 | 1.15e-13 | 65.9 |
MS.gene39677.t1 | MTR_5g032880 | 40.741 | 81 | 42 | 2 | 44 | 119 | 362 | 441 | 8.63e-13 | 63.9 |
MS.gene39677.t1 | MTR_5g032880 | 39.506 | 81 | 35 | 2 | 44 | 119 | 24 | 95 | 3.97e-11 | 59.3 |
MS.gene39677.t1 | MTR_3g070860 | 30.000 | 110 | 67 | 2 | 19 | 118 | 6 | 115 | 1.95e-12 | 62.8 |
MS.gene39677.t1 | MTR_5g032870 | 39.506 | 81 | 43 | 2 | 44 | 119 | 24 | 103 | 2.70e-12 | 62.4 |
MS.gene39677.t1 | MTR_4g015790 | 35.000 | 80 | 48 | 1 | 43 | 118 | 48 | 127 | 4.27e-12 | 62.0 |
MS.gene39677.t1 | MTR_1g034140 | 44.776 | 67 | 31 | 1 | 53 | 119 | 27 | 87 | 7.08e-12 | 61.2 |
MS.gene39677.t1 | MTR_0009s0050 | 42.647 | 68 | 35 | 1 | 53 | 120 | 47 | 110 | 7.67e-12 | 61.2 |
MS.gene39677.t1 | MTR_0009s0050 | 42.647 | 68 | 35 | 1 | 53 | 120 | 47 | 110 | 7.74e-12 | 61.2 |
MS.gene39677.t1 | MTR_3g091360 | 35.165 | 91 | 49 | 2 | 39 | 119 | 28 | 118 | 8.42e-12 | 60.8 |
MS.gene39677.t1 | MTR_4g087090 | 37.500 | 80 | 42 | 2 | 45 | 116 | 18 | 97 | 1.70e-11 | 60.1 |
MS.gene39677.t1 | MTR_1g032230 | 35.238 | 105 | 54 | 3 | 19 | 122 | 22 | 113 | 1.76e-11 | 59.7 |
MS.gene39677.t1 | MTR_5g025050 | 40.909 | 66 | 33 | 1 | 52 | 117 | 4 | 63 | 2.44e-11 | 59.7 |
MS.gene39677.t1 | MTR_4g087130 | 36.585 | 82 | 45 | 2 | 45 | 119 | 14 | 95 | 2.61e-11 | 59.7 |
MS.gene39677.t1 | MTR_3g045230 | 35.135 | 111 | 51 | 3 | 27 | 123 | 17 | 120 | 3.56e-11 | 59.3 |
MS.gene39677.t1 | MTR_3g464530 | 35.135 | 74 | 38 | 1 | 50 | 123 | 31 | 94 | 4.21e-11 | 58.5 |
MS.gene39677.t1 | MTR_7g102720 | 37.113 | 97 | 48 | 3 | 27 | 123 | 18 | 101 | 4.56e-11 | 58.9 |
MS.gene39677.t1 | MTR_3g043900 | 34.579 | 107 | 49 | 3 | 27 | 119 | 17 | 116 | 5.25e-11 | 58.5 |
MS.gene39677.t1 | MTR_5g082750 | 35.526 | 76 | 48 | 1 | 48 | 123 | 44 | 118 | 5.34e-11 | 58.5 |
MS.gene39677.t1 | MTR_7g062570 | 38.667 | 75 | 42 | 1 | 44 | 118 | 46 | 116 | 5.60e-11 | 58.5 |
MS.gene39677.t1 | MTR_3g464530 | 35.211 | 71 | 36 | 1 | 53 | 123 | 34 | 94 | 6.11e-11 | 58.5 |
MS.gene39677.t1 | MTR_5g055690 | 31.132 | 106 | 60 | 3 | 27 | 123 | 12 | 113 | 6.88e-11 | 58.2 |
MS.gene39677.t1 | MTR_4g087140 | 41.667 | 72 | 39 | 1 | 53 | 121 | 26 | 97 | 6.88e-11 | 58.5 |
MS.gene39677.t1 | MTR_5g048550 | 37.037 | 81 | 39 | 2 | 48 | 120 | 34 | 110 | 6.96e-11 | 58.5 |
MS.gene39677.t1 | MTR_5g055690 | 31.132 | 106 | 60 | 3 | 27 | 123 | 12 | 113 | 7.26e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39677.t1 | AT5G59540 | 50.420 | 119 | 47 | 3 | 15 | 122 | 12 | 129 | 5.10e-35 | 122 |
MS.gene39677.t1 | AT5G59540 | 50.420 | 119 | 47 | 3 | 15 | 122 | 12 | 129 | 1.72e-34 | 122 |
MS.gene39677.t1 | AT1G06640 | 50.413 | 121 | 47 | 2 | 17 | 124 | 15 | 135 | 3.04e-33 | 117 |
MS.gene39677.t1 | AT1G06640 | 47.794 | 136 | 55 | 4 | 4 | 124 | 1 | 135 | 4.57e-33 | 118 |
MS.gene39677.t1 | AT1G06640 | 50.413 | 121 | 47 | 2 | 17 | 124 | 15 | 135 | 8.60e-33 | 118 |
MS.gene39677.t1 | AT5G59530 | 50.000 | 120 | 49 | 3 | 15 | 124 | 11 | 129 | 5.96e-32 | 115 |
MS.gene39677.t1 | AT1G06620 | 50.877 | 114 | 45 | 2 | 19 | 122 | 18 | 130 | 7.42e-32 | 114 |
MS.gene39677.t1 | AT1G06645 | 49.580 | 119 | 47 | 2 | 17 | 122 | 28 | 146 | 8.66e-32 | 115 |
MS.gene39677.t1 | AT1G03410 | 48.305 | 118 | 48 | 2 | 17 | 122 | 46 | 162 | 1.27e-31 | 115 |
MS.gene39677.t1 | AT1G06620 | 50.877 | 114 | 45 | 2 | 19 | 122 | 18 | 130 | 2.13e-31 | 114 |
MS.gene39677.t1 | AT1G03410 | 48.305 | 118 | 48 | 2 | 17 | 122 | 9 | 125 | 5.15e-31 | 113 |
MS.gene39677.t1 | AT1G06650 | 47.107 | 121 | 51 | 2 | 17 | 124 | 15 | 135 | 9.77e-31 | 111 |
MS.gene39677.t1 | AT2G30830 | 46.491 | 114 | 53 | 1 | 17 | 122 | 10 | 123 | 1.63e-30 | 112 |
MS.gene39677.t1 | AT1G06650 | 47.107 | 121 | 51 | 2 | 17 | 124 | 15 | 135 | 1.95e-30 | 112 |
MS.gene39677.t1 | AT3G61400 | 41.353 | 133 | 64 | 2 | 4 | 122 | 1 | 133 | 1.33e-29 | 108 |
MS.gene39677.t1 | AT3G61400 | 41.353 | 133 | 64 | 2 | 4 | 122 | 1 | 133 | 3.11e-29 | 108 |
MS.gene39677.t1 | AT5G43440 | 45.082 | 122 | 50 | 3 | 17 | 124 | 13 | 131 | 1.69e-27 | 102 |
MS.gene39677.t1 | AT1G04350 | 45.000 | 120 | 51 | 3 | 14 | 122 | 8 | 123 | 1.98e-27 | 103 |
MS.gene39677.t1 | AT2G30840 | 44.068 | 118 | 54 | 2 | 17 | 122 | 10 | 127 | 2.18e-27 | 102 |
MS.gene39677.t1 | AT5G43440 | 45.082 | 122 | 50 | 3 | 17 | 124 | 13 | 131 | 4.89e-27 | 102 |
MS.gene39677.t1 | AT2G30840 | 44.068 | 118 | 54 | 2 | 17 | 122 | 10 | 127 | 4.96e-27 | 102 |
MS.gene39677.t1 | AT2G30840 | 44.068 | 118 | 54 | 2 | 17 | 122 | 10 | 127 | 5.04e-27 | 102 |
MS.gene39677.t1 | AT2G25450 | 44.348 | 115 | 54 | 3 | 17 | 122 | 10 | 123 | 8.90e-27 | 102 |
MS.gene39677.t1 | AT1G03400 | 45.299 | 117 | 44 | 3 | 17 | 122 | 9 | 116 | 4.89e-26 | 100 |
MS.gene39677.t1 | AT1G03400 | 45.299 | 117 | 44 | 3 | 17 | 122 | 9 | 116 | 6.52e-26 | 100 |
MS.gene39677.t1 | AT5G43450 | 41.818 | 110 | 49 | 3 | 21 | 118 | 17 | 123 | 3.85e-23 | 91.3 |
MS.gene39677.t1 | AT5G43450 | 41.441 | 111 | 50 | 3 | 20 | 118 | 16 | 123 | 5.96e-23 | 92.0 |
MS.gene39677.t1 | AT1G04380 | 37.190 | 121 | 47 | 4 | 17 | 125 | 14 | 117 | 3.71e-19 | 80.5 |
MS.gene39677.t1 | AT1G04380 | 37.190 | 121 | 47 | 4 | 17 | 125 | 14 | 117 | 6.38e-19 | 80.9 |
MS.gene39677.t1 | AT1G55290 | 36.538 | 104 | 49 | 3 | 27 | 119 | 25 | 122 | 7.49e-15 | 69.7 |
MS.gene39677.t1 | AT3G13610 | 34.615 | 104 | 50 | 3 | 27 | 119 | 26 | 122 | 1.18e-13 | 66.2 |
MS.gene39677.t1 | AT3G19010 | 42.857 | 70 | 38 | 1 | 47 | 116 | 22 | 89 | 1.23e-12 | 63.5 |
MS.gene39677.t1 | AT3G19010 | 42.857 | 70 | 38 | 1 | 47 | 116 | 22 | 89 | 1.23e-12 | 63.5 |
MS.gene39677.t1 | AT3G19010 | 42.857 | 70 | 38 | 1 | 47 | 116 | 22 | 89 | 1.32e-12 | 63.2 |
MS.gene39677.t1 | AT3G19010 | 42.857 | 70 | 38 | 1 | 47 | 116 | 22 | 89 | 1.40e-12 | 63.2 |
MS.gene39677.t1 | AT3G12900 | 37.383 | 107 | 50 | 5 | 27 | 122 | 21 | 121 | 2.21e-11 | 59.7 |
MS.gene39677.t1 | AT1G14120 | 42.029 | 69 | 34 | 1 | 48 | 116 | 3 | 65 | 2.25e-11 | 59.7 |
MS.gene39677.t1 | AT1G14120 | 42.029 | 69 | 34 | 1 | 48 | 116 | 3 | 65 | 2.25e-11 | 59.7 |
MS.gene39677.t1 | AT1G14120 | 42.029 | 69 | 34 | 1 | 48 | 116 | 3 | 65 | 2.25e-11 | 59.7 |
MS.gene39677.t1 | AT2G38240 | 28.182 | 110 | 63 | 3 | 20 | 118 | 4 | 108 | 2.75e-11 | 59.7 |
Find 29 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGTTATCAATATCTTTA+AGG | 0.109801 | 8.3:+79830846 | None:intergenic |
GAAACAAAAGCAGGTGTAAA+AGG | 0.298787 | 8.3:-79830950 | MS.gene39677:CDS |
TCAAGGAAGCATGTGAAACT+TGG | 0.407695 | 8.3:-79830790 | MS.gene39677:CDS |
GGTGTAAAAGGATTTGTTGA+TGG | 0.428824 | 8.3:-79830938 | MS.gene39677:CDS |
ACAATCCCTTGATGAATACT+TGG | 0.481285 | 8.3:+79830821 | None:intergenic |
ATGAATGTGGAGTCAAGGTT+AGG | 0.482514 | 8.3:+79830992 | None:intergenic |
CAAGGAAGCATGTGAAACTT+GGG | 0.488613 | 8.3:-79830789 | MS.gene39677:CDS |
GGAATAACATGGCTTGTGTC+TGG | 0.501989 | 8.3:+79830878 | None:intergenic |
ATCTCCTCAAGAACACTCAA+AGG | 0.510634 | 8.3:+79830737 | None:intergenic |
GAGTGTTCTTGAGGAGATGA+AGG | 0.513387 | 8.3:-79830732 | MS.gene39677:CDS |
AAAGATCCAAGTATTCATCA+AGG | 0.518202 | 8.3:-79830827 | MS.gene39677:CDS |
TCTCCTCAAGAACACTCAAA+GGG | 0.535297 | 8.3:+79830738 | None:intergenic |
GGCTTGTGTCTGGTTGATGA+TGG | 0.537784 | 8.3:+79830888 | None:intergenic |
CCATCCTTCATCTCAAACAA+AGG | 0.545049 | 8.3:+79830649 | None:intergenic |
GTAAAAGGATTTGTTGATGG+AGG | 0.549204 | 8.3:-79830935 | MS.gene39677:CDS |
AGGGATTGTTGACAAAATCA+AGG | 0.552396 | 8.3:-79830807 | MS.gene39677:CDS |
AATCCCTTTGAGTGTTCTTG+AGG | 0.553310 | 8.3:-79830741 | MS.gene39677:CDS |
TGCTTTGCGTTCAATGAATG+TGG | 0.574285 | 8.3:+79830979 | None:intergenic |
TGTGAAGAAGTTTCATGAGA+TGG | 0.585093 | 8.3:-79830705 | MS.gene39677:CDS |
GCATTTGATGAAACAAAAGC+AGG | 0.595830 | 8.3:-79830959 | MS.gene39677:CDS |
TGTGGAGTCAAGGTTAGGCT+TGG | 0.595998 | 8.3:+79830997 | None:intergenic |
AAGGAAGCATGTGAAACTTG+GGG | 0.598891 | 8.3:-79830788 | MS.gene39677:CDS |
ATATCTTTAAGGTCTATGAC+AGG | 0.600704 | 8.3:+79830857 | None:intergenic |
GGTTGATGATGGAATAAGCT+TGG | 0.607370 | 8.3:+79830899 | None:intergenic |
AAGATCCAAGTATTCATCAA+GGG | 0.612697 | 8.3:-79830826 | MS.gene39677:CDS |
GTTCAATGAATGTGGAGTCA+AGG | 0.624039 | 8.3:+79830987 | None:intergenic |
GTTCTTGAGGAGATGAAGGA+TGG | 0.628456 | 8.3:-79830728 | MS.gene39677:CDS |
GGTCTATGACAGGAATAACA+TGG | 0.670694 | 8.3:+79830867 | None:intergenic |
AGGAAGCATGTGAAACTTGG+GGG | 0.692972 | 8.3:-79830787 | MS.gene39677:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTTGTTATCAATATCTTTA+AGG | + | chr8.3:79830834-79830853 | None:intergenic | 20.0% |
!!! | TTTTTTCAAGTTGTTAATCA+TGG | - | chr8.3:79830913-79830932 | MS.gene39677:CDS | 20.0% |
AAAGATCCAAGTATTCATCA+AGG | - | chr8.3:79830850-79830869 | MS.gene39677:CDS | 30.0% | |
AAGATCCAAGTATTCATCAA+GGG | - | chr8.3:79830851-79830870 | MS.gene39677:CDS | 30.0% | |
!! | ATATCTTTAAGGTCTATGAC+AGG | + | chr8.3:79830823-79830842 | None:intergenic | 30.0% |
ACAATCCCTTGATGAATACT+TGG | + | chr8.3:79830859-79830878 | None:intergenic | 35.0% | |
AGGGATTGTTGACAAAATCA+AGG | - | chr8.3:79830870-79830889 | MS.gene39677:CDS | 35.0% | |
GAAACAAAAGCAGGTGTAAA+AGG | - | chr8.3:79830727-79830746 | MS.gene39677:CDS | 35.0% | |
GCATTTGATGAAACAAAAGC+AGG | - | chr8.3:79830718-79830737 | MS.gene39677:CDS | 35.0% | |
TGTGAAGAAGTTTCATGAGA+TGG | - | chr8.3:79830972-79830991 | MS.gene39677:CDS | 35.0% | |
!! | GGTGTAAAAGGATTTGTTGA+TGG | - | chr8.3:79830739-79830758 | MS.gene39677:CDS | 35.0% |
!! | GTAAAAGGATTTGTTGATGG+AGG | - | chr8.3:79830742-79830761 | MS.gene39677:CDS | 35.0% |
AATCCCTTTGAGTGTTCTTG+AGG | - | chr8.3:79830936-79830955 | MS.gene39677:CDS | 40.0% | |
ATCTCCTCAAGAACACTCAA+AGG | + | chr8.3:79830943-79830962 | None:intergenic | 40.0% | |
ATGAATGTGGAGTCAAGGTT+AGG | + | chr8.3:79830688-79830707 | None:intergenic | 40.0% | |
GGTCTATGACAGGAATAACA+TGG | + | chr8.3:79830813-79830832 | None:intergenic | 40.0% | |
GTTCAATGAATGTGGAGTCA+AGG | + | chr8.3:79830693-79830712 | None:intergenic | 40.0% | |
TCTCCTCAAGAACACTCAAA+GGG | + | chr8.3:79830942-79830961 | None:intergenic | 40.0% | |
TGCTTTGCGTTCAATGAATG+TGG | + | chr8.3:79830701-79830720 | None:intergenic | 40.0% | |
! | AAGGAAGCATGTGAAACTTG+GGG | - | chr8.3:79830889-79830908 | MS.gene39677:CDS | 40.0% |
! | CAAGGAAGCATGTGAAACTT+GGG | - | chr8.3:79830888-79830907 | MS.gene39677:CDS | 40.0% |
! | TCAAGGAAGCATGTGAAACT+TGG | - | chr8.3:79830887-79830906 | MS.gene39677:CDS | 40.0% |
!! | GGTTGATGATGGAATAAGCT+TGG | + | chr8.3:79830781-79830800 | None:intergenic | 40.0% |
GAGTGTTCTTGAGGAGATGA+AGG | - | chr8.3:79830945-79830964 | MS.gene39677:CDS | 45.0% | |
GTTCTTGAGGAGATGAAGGA+TGG | - | chr8.3:79830949-79830968 | MS.gene39677:CDS | 45.0% | |
! | AGGAAGCATGTGAAACTTGG+GGG | - | chr8.3:79830890-79830909 | MS.gene39677:CDS | 45.0% |
! | GGAATAACATGGCTTGTGTC+TGG | + | chr8.3:79830802-79830821 | None:intergenic | 45.0% |
TGTGGAGTCAAGGTTAGGCT+TGG | + | chr8.3:79830683-79830702 | None:intergenic | 50.0% | |
!! | GGCTTGTGTCTGGTTGATGA+TGG | + | chr8.3:79830792-79830811 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 79830661 | 79831038 | 79830661 | ID=MS.gene39677 |
chr8.3 | mRNA | 79830661 | 79831038 | 79830661 | ID=MS.gene39677.t1;Parent=MS.gene39677 |
chr8.3 | exon | 79830661 | 79831038 | 79830661 | ID=MS.gene39677.t1.exon1;Parent=MS.gene39677.t1 |
chr8.3 | CDS | 79830661 | 79831038 | 79830661 | ID=cds.MS.gene39677.t1;Parent=MS.gene39677.t1 |
Gene Sequence |
Protein sequence |