AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39709

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39709.t1 MTR_8g008505 91.135 282 23 2 1 281 1 281 0.0 523
MS.gene39709.t1 MTR_8g008500 87.676 284 32 1 1 281 1 284 0.0 513
MS.gene39709.t1 MTR_8g008660 79.715 281 54 2 1 281 1 278 4.77e-163 454
MS.gene39709.t1 MTR_3g464040 77.656 273 58 2 9 281 1 270 2.12e-151 424
MS.gene39709.t1 MTR_8g007675 67.969 256 80 2 27 281 32 286 1.79e-126 361
MS.gene39709.t1 MTR_8g007670 56.489 262 103 4 26 281 6 262 1.32e-103 303
MS.gene39709.t1 MTR_5g018320 52.308 260 120 4 24 281 2 259 2.10e-92 274
MS.gene39709.t1 MTR_5g018300 50.775 258 123 4 26 281 7 262 3.38e-90 268
MS.gene39709.t1 MTR_5g018280 50.000 260 121 6 26 281 7 261 2.67e-87 261
MS.gene39709.t1 MTR_8g007670 50.584 257 82 3 26 281 6 218 8.14e-87 258
MS.gene39709.t1 MTR_8g079120 41.538 260 139 6 26 281 10 260 1.08e-61 196
MS.gene39709.t1 MTR_5g018365 41.473 258 142 6 26 281 11 261 9.79e-58 186
MS.gene39709.t1 MTR_5g018350 39.147 258 146 5 27 281 7 256 1.30e-54 177
MS.gene39709.t1 MTR_5g068100 37.405 262 148 6 26 281 29 280 5.04e-49 164
MS.gene39709.t1 MTR_7g015220 37.795 254 150 4 27 278 124 371 8.92e-48 163
MS.gene39709.t1 MTR_3g093730 36.047 258 150 5 26 278 35 282 4.11e-45 154
MS.gene39709.t1 MTR_3g005410 32.685 257 164 4 26 279 93 343 3.09e-41 145
MS.gene39709.t1 MTR_8g079120 44.643 168 83 4 26 189 52 213 1.70e-40 140
MS.gene39709.t1 MTR_5g008130 74.684 79 20 0 203 281 2 80 2.17e-35 122
MS.gene39709.t1 MTR_3g093730 33.462 260 109 7 26 278 35 237 1.25e-34 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39709.t1 AT3G50440 42.023 257 142 4 28 281 22 274 1.20e-65 206
MS.gene39709.t1 AT2G23600 43.243 259 140 4 26 281 8 262 2.14e-65 205
MS.gene39709.t1 AT2G23600 43.243 259 140 4 26 281 23 277 4.10e-65 205
MS.gene39709.t1 AT2G23620 42.966 263 135 5 26 281 8 262 1.72e-64 203
MS.gene39709.t1 AT2G23610 42.857 259 141 4 26 281 8 262 6.50e-64 201
MS.gene39709.t1 AT2G23580 43.071 267 134 9 24 281 5 262 1.14e-60 193
MS.gene39709.t1 AT2G23590 40.727 275 144 9 15 281 8 271 5.22e-60 192
MS.gene39709.t1 AT4G37150 40.809 272 127 8 26 281 2 255 1.40e-56 182
MS.gene39709.t1 AT2G23560 39.382 259 152 4 24 281 5 259 1.59e-54 177
MS.gene39709.t1 AT2G23550 40.075 267 142 8 24 281 5 262 2.10e-54 177
MS.gene39709.t1 AT2G23550 40.075 267 142 8 24 281 12 269 2.56e-54 177
MS.gene39709.t1 AT2G23610 38.281 256 112 4 26 281 8 217 5.15e-51 167
MS.gene39709.t1 AT1G33990 36.187 257 155 4 26 279 96 346 4.59e-50 169
MS.gene39709.t1 AT1G26360 38.168 262 150 6 22 279 184 437 2.02e-49 169
MS.gene39709.t1 AT1G69240 35.878 262 158 5 22 279 182 437 2.32e-48 166
MS.gene39709.t1 AT5G10300 38.281 256 153 4 27 281 6 257 2.44e-48 161
MS.gene39709.t1 AT4G09900 35.798 257 156 5 26 279 97 347 4.18e-48 163
MS.gene39709.t1 AT5G58310 34.328 268 146 7 27 278 5 258 1.38e-46 157
MS.gene39709.t1 AT3G29770 39.768 259 140 7 27 279 138 386 2.35e-46 160
MS.gene39709.t1 AT4G16690 35.317 252 153 5 27 276 12 255 3.81e-45 153
MS.gene39709.t1 AT3G10870 34.646 254 161 4 27 278 20 270 1.06e-44 152
MS.gene39709.t1 AT2G23600 45.732 164 85 2 26 186 23 185 8.82e-43 145
MS.gene39709.t1 AT2G23550 35.714 266 126 7 24 281 5 233 1.01e-41 144
MS.gene39709.t1 AT2G23580 44.970 169 80 6 24 184 5 168 2.25e-37 131
MS.gene39709.t1 AT4G37140 50.459 109 53 1 26 134 2 109 5.09e-34 120
MS.gene39709.t1 AT2G23550 42.012 169 85 5 24 184 12 175 7.41e-33 120
MS.gene39709.t1 AT5G10300 41.718 163 93 2 27 188 6 167 1.35e-31 116
MS.gene39709.t1 AT2G23570 39.011 182 101 5 105 281 2 178 6.59e-29 108
MS.gene39709.t1 AT4G37140 50.000 92 45 1 26 117 2 92 1.24e-28 105
MS.gene39709.t1 AT3G29770 48.649 74 37 1 27 100 138 210 1.09e-16 78.6

Find 56 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCTTTGATATCATTTA+TGG 0.078023 8.1:+85893231 MS.gene39709:CDS
CCACAGTTATTGTTCTTAAA+TGG 0.151463 8.1:+85893961 MS.gene39709:CDS
GAATTACAGTTGTGAAATTA+AGG 0.203942 8.1:-85893390 None:intergenic
CCTCCAACTGCCTTGTTGTT+TGG 0.223716 8.1:+85893994 MS.gene39709:CDS
ATTCTTGTGGGTCATAGTTT+TGG 0.257233 8.1:+85893280 MS.gene39709:CDS
TAATGTTAGCACAATTGATT+TGG 0.307926 8.1:+85893147 MS.gene39709:CDS
TGCTGAGGTGAAAGTGATAA+AGG 0.318232 8.1:+85895143 MS.gene39709:CDS
TTGCTGATAATGAAGACTTT+TGG 0.340901 8.1:-85895060 None:intergenic
TGAATCTCTTGGACCTGTAT+TGG 0.346355 8.1:-85893187 None:intergenic
TACTCTTCCATTCCTTTGCT+TGG 0.354752 8.1:-85895037 None:intergenic
CAGATGAGATGCCAAGAGTT+TGG 0.357433 8.1:-85894019 None:intergenic
TTTGTGCTTGTTCATGGAGC+TGG 0.361826 8.1:+85893070 MS.gene39709:CDS
ATATCATCAAGATGTTTAAC+CGG 0.368404 8.1:+85892978 None:intergenic
ACAATTGATTTGGCTGCTTC+AGG 0.377565 8.1:+85893157 MS.gene39709:CDS
AATTACAGTTGTGAAATTAA+GGG 0.385824 8.1:-85893389 None:intergenic
AAGGCAGTTGGAGGACTGTT+TGG 0.392141 8.1:-85893985 None:intergenic
ATCACTTTCACCTCAGCATA+AGG 0.395471 8.1:-85895138 None:intergenic
AAGCACTTTGTGCTTGTTCA+TGG 0.396917 8.1:+85893064 MS.gene39709:CDS
TGGTGCATGGTGTTGGTATA+AGG 0.400591 8.1:+85893096 MS.gene39709:CDS
AAATATTTGAATGAATCTCT+TGG 0.405238 8.1:-85893198 None:intergenic
TTTGACACTTGGATCATCAT+TGG 0.411517 8.1:+85894957 MS.gene39709:CDS
TCAACACAACGTGTCTTTCC+CGG 0.414773 8.1:-85892997 None:intergenic
GTTGTTTGGATCCAAACTCT+TGG 0.434228 8.1:+85894008 MS.gene39709:CDS
GATAAAGGGTTCAGATCATA+TGG 0.444154 8.1:+85895158 MS.gene39709:CDS
CATGCGTAGGATTTGACACT+TGG 0.451930 8.1:+85894946 MS.gene39709:intron
TTCTCTTCCTCCAAAGGAAA+AGG 0.464266 8.1:+85893255 MS.gene39709:CDS
GATACCCTTATCTGTTGCTA+TGG 0.489986 8.1:+85893306 MS.gene39709:CDS
AAGGAAAAGGTGATTCTTGT+GGG 0.492621 8.1:+85893268 MS.gene39709:CDS
GCTGAGGTGAAAGTGATAAA+GGG 0.493443 8.1:+85895144 MS.gene39709:CDS
TTAGAGAGGATATGCAGTTA+TGG 0.507529 8.1:+85895097 MS.gene39709:CDS
ATGGAGCTGGCCATGGTGCA+TGG 0.509766 8.1:+85893083 MS.gene39709:CDS
TTATGGATAATTGAGAGAAC+TGG 0.510143 8.1:+85895114 MS.gene39709:CDS
GCAACTATGCTTAAATCAGC+TGG 0.513884 8.1:+85893121 MS.gene39709:CDS
TTCAGGTATCAATCCAATAC+AGG 0.517321 8.1:+85893174 MS.gene39709:CDS
TATGGATTCTCTTCCTCCAA+AGG 0.520175 8.1:+85893249 MS.gene39709:CDS
GATCCAAACAACAAGGCAGT+TGG 0.527636 8.1:-85893997 None:intergenic
CTGGCCATGGTGCATGGTGT+TGG 0.530072 8.1:+85893089 MS.gene39709:CDS
TTGTCATTAAAGATAGGATG+TGG 0.530621 8.1:-85894985 None:intergenic
CTTGTTCATGGAGCTGGCCA+TGG 0.536035 8.1:+85893076 MS.gene39709:CDS
AAAGGAAAAGGTGATTCTTG+TGG 0.537925 8.1:+85893267 MS.gene39709:CDS
AGAGTTACCAAGCAAAGGAA+TGG 0.542269 8.1:+85895030 MS.gene39709:CDS
TTTCACAACTGTAATTCAAG+AGG 0.547572 8.1:+85893396 MS.gene39709:CDS
GTATCAATTATCGCCTAATG+AGG 0.552044 8.1:+85894041 MS.gene39709:CDS
TTTAAGAACAATAACTGTGG+TGG 0.553701 8.1:-85893958 None:intergenic
AAAGTCTTCATTATCAGCAA+AGG 0.566673 8.1:+85895063 MS.gene39709:CDS
CCAAACAACAAGGCAGTTGG+AGG 0.578597 8.1:-85893994 None:intergenic
TATCATCAAGATGTTTAACC+GGG 0.579472 8.1:+85892979 None:intergenic
AAACAAGAGTTACCAAGCAA+AGG 0.598148 8.1:+85895025 MS.gene39709:CDS
CACTTGGATCATCATTGGTG+AGG 0.609021 8.1:+85894962 MS.gene39709:CDS
GAATCCATAAATGATATCAA+AGG 0.609540 8.1:-85893235 None:intergenic
AGGAGACAATATCATTAGAG+AGG 0.640958 8.1:+85895083 MS.gene39709:CDS
TATACCAACACCATGCACCA+TGG 0.666354 8.1:-85893093 None:intergenic
GAGTTTGGATCCAAACAACA+AGG 0.680669 8.1:-85894004 None:intergenic
AGCAATCTTTAGTATGTGAG+AGG 0.702231 8.1:-85895208 None:intergenic
CCATTTAAGAACAATAACTG+TGG 0.713087 8.1:-85893961 None:intergenic
GAGAACTGGTCCTTATGCTG+AGG 0.742670 8.1:+85895128 MS.gene39709:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATATATATATATA+TGG + chr8.1:85894535-85894554 MS.gene39709:intron 0.0%
!! TATATATATATATATATATA+TGG - chr8.1:85894903-85894884 None:intergenic 0.0%
!! TATTTATATTAATAAAAATT+AGG + chr8.1:85893616-85893635 MS.gene39709:intron 0.0%
!! AAAATAATAATCAAATTCAA+AGG - chr8.1:85893658-85893677 None:intergenic 10.0%
!! AAAATTCATACATATATATA+TGG + chr8.1:85894737-85894756 MS.gene39709:intron 10.0%
!! AAATTCATACATATATATAT+GGG + chr8.1:85894738-85894757 MS.gene39709:intron 10.0%
!! AATATAAATATATATAACCA+TGG - chr8.1:85893606-85893625 None:intergenic 10.0%
!! AATGCAAAATTAAAATTATT+AGG + chr8.1:85893812-85893831 MS.gene39709:intron 10.0%
!! ATGCAAAATTAAAATTATTA+GGG + chr8.1:85893813-85893832 MS.gene39709:intron 10.0%
!!! TTATAATTTGAAGTTTAATT+TGG - chr8.1:85894361-85894380 None:intergenic 10.0%
!! ATTAAACTTCAAATTATAAG+AGG + chr8.1:85894362-85894381 MS.gene39709:intron 15.0%
!! CAAATAAGTTTATAGATTAT+TGG - chr8.1:85894416-85894435 None:intergenic 15.0%
!! GTAAGAAAACAAAATTATAA+AGG - chr8.1:85893690-85893709 None:intergenic 15.0%
!!! AAAGGAATTAATTTTAATTG+TGG + chr8.1:85893875-85893894 MS.gene39709:intron 15.0%
!!! GCATTTTAATTTCTAATAAA+AGG - chr8.1:85893797-85893816 None:intergenic 15.0%
!!! TGATTGAAAATTTGAAATAA+AGG + chr8.1:85894080-85894099 MS.gene39709:intron 15.0%
!!! TGTTGTTGTTAATTTTTAAA+GGG + chr8.1:85894204-85894223 MS.gene39709:intron 15.0%
!!! TTGTTGTTGTTAATTTTTAA+AGG + chr8.1:85894203-85894222 MS.gene39709:intron 15.0%
!!! TTTATTCTTTCATTTTTCAT+TGG + chr8.1:85893031-85893050 MS.gene39709:CDS 15.0%
!! AAATATTTGAATGAATCTCT+TGG - chr8.1:85893201-85893220 None:intergenic 20.0%
!! AATTACAGTTGTGAAATTAA+GGG - chr8.1:85893392-85893411 None:intergenic 20.0%
!! ATCAAGAGAAAATATCATAA+TGG - chr8.1:85894471-85894490 None:intergenic 20.0%
!! TCAAGAGAAAATATCATAAT+GGG - chr8.1:85894470-85894489 None:intergenic 20.0%
!! TCTATTATTCAAGAAAAAGA+GGG - chr8.1:85893513-85893532 None:intergenic 20.0%
!! TTCTATTATTCAAGAAAAAG+AGG - chr8.1:85893514-85893533 None:intergenic 20.0%
!!! AAATATGTGATGGATTAATA+AGG + chr8.1:85893484-85893503 MS.gene39709:intron 20.0%
!!! AGTTTTTTGTCATTAAAGAT+AGG - chr8.1:85894994-85895013 None:intergenic 20.0%
!!! TTAGAAGACATATTTTATGA+AGG + chr8.1:85894563-85894582 MS.gene39709:intron 20.0%
! AATAGAATAAAGTCTTGATC+TGG + chr8.1:85893527-85893546 MS.gene39709:intron 25.0%
! ACACCTTCATAAAAATTAGT+TGG - chr8.1:85894632-85894651 None:intergenic 25.0%
! ATATGTTAAAGTACGTAACT+TGG - chr8.1:85894517-85894536 None:intergenic 25.0%
! CCACATTTATATATTAGAAG+GGG + chr8.1:85893439-85893458 MS.gene39709:intron 25.0%
! CCCACATTTATATATTAGAA+GGG + chr8.1:85893438-85893457 MS.gene39709:intron 25.0%
! CCCTTCTAATATATAAATGT+GGG - chr8.1:85893441-85893460 None:intergenic 25.0%
! GAATCCATAAATGATATCAA+AGG - chr8.1:85893238-85893257 None:intergenic 25.0%
! GAATTACAGTTGTGAAATTA+AGG - chr8.1:85893393-85893412 None:intergenic 25.0%
! GATTACTTCAACAAATCTAA+AGG - chr8.1:85894252-85894271 None:intergenic 25.0%
! GCAAAGTTATAACTAAAAAG+TGG - chr8.1:85894824-85894843 None:intergenic 25.0%
! TAATGTTAGCACAATTGATT+TGG + chr8.1:85893147-85893166 MS.gene39709:CDS 25.0%
! TCCCACATTTATATATTAGA+AGG + chr8.1:85893437-85893456 MS.gene39709:intron 25.0%
! TGAACCTTTGATATCATTTA+TGG + chr8.1:85893231-85893250 MS.gene39709:CDS 25.0%
! TTAAGACTCAAAATATGTGA+TGG + chr8.1:85893474-85893493 MS.gene39709:intron 25.0%
! TTCATCAACTCAGAATTTAA+AGG + chr8.1:85893857-85893876 MS.gene39709:intron 25.0%
!! ACACCAACTAATTTTTATGA+AGG + chr8.1:85894626-85894645 MS.gene39709:intron 25.0%
!! ATATTTTCTCTTGATATCAC+TGG + chr8.1:85894476-85894495 MS.gene39709:intron 25.0%
!! CTAGAAAACAGTTTTTATGA+AGG - chr8.1:85894856-85894875 None:intergenic 25.0%
!! TTAAAGGGTTATTTCAAAGT+TGG + chr8.1:85894219-85894238 MS.gene39709:intron 25.0%
!!! TATATATTAGAAGGGGTATT+CGG + chr8.1:85893446-85893465 MS.gene39709:intron 25.0%
AAAGTCTTCATTATCAGCAA+AGG + chr8.1:85895063-85895082 MS.gene39709:CDS 30.0%
ATGGTTACTAACATCTGAAA+TGG - chr8.1:85893587-85893606 None:intergenic 30.0%
ATTTCAGATGTTAGTAACCA+TGG + chr8.1:85893586-85893605 MS.gene39709:intron 30.0%
CCACAGTTATTGTTCTTAAA+TGG + chr8.1:85893961-85893980 MS.gene39709:CDS 30.0%
CCATTTAAGAACAATAACTG+TGG - chr8.1:85893964-85893983 None:intergenic 30.0%
CCCCTTCTAATATATAAATG+TGG - chr8.1:85893442-85893461 None:intergenic 30.0%
GCAAAAAAGTTTACCTCATT+AGG - chr8.1:85894057-85894076 None:intergenic 30.0%
TCTTAACCTCCTCATTTATA+GGG - chr8.1:85894393-85894412 None:intergenic 30.0%
TTATGGATAATTGAGAGAAC+TGG + chr8.1:85895114-85895133 MS.gene39709:CDS 30.0%
TTGCTAAAAGACACTTTCAT+CGG + chr8.1:85894703-85894722 MS.gene39709:intron 30.0%
TTGTCATTAAAGATAGGATG+TGG - chr8.1:85894988-85895007 None:intergenic 30.0%
TTTAAGAACAATAACTGTGG+TGG - chr8.1:85893961-85893980 None:intergenic 30.0%
TTTCACAACTGTAATTCAAG+AGG + chr8.1:85893396-85893415 MS.gene39709:CDS 30.0%
! ACTGCAACAGAAATTTTCTT+AGG - chr8.1:85893340-85893359 None:intergenic 30.0%
! ATATTGATTGTAACATGCGT+AGG + chr8.1:85894933-85894952 MS.gene39709:intron 30.0%
! CTGCAACAGAAATTTTCTTA+GGG - chr8.1:85893339-85893358 None:intergenic 30.0%
! TTTTCCATAGCAACAGATAA+GGG - chr8.1:85893313-85893332 None:intergenic 30.0%
!! TTGCTGATAATGAAGACTTT+TGG - chr8.1:85895063-85895082 None:intergenic 30.0%
!!! TCATTTTTCATTGGTGCTAA+TGG + chr8.1:85893040-85893059 MS.gene39709:CDS 30.0%
AAACAAGAGTTACCAAGCAA+AGG + chr8.1:85895025-85895044 MS.gene39709:CDS 35.0%
AAAGGAAAAGGTGATTCTTG+TGG + chr8.1:85893267-85893286 MS.gene39709:CDS 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr8.1:85894674-85894693 MS.gene39709:intron 35.0%
AAAGTGGAAATCACACCTTA+AGG - chr8.1:85894808-85894827 None:intergenic 35.0%
AAGGAAAAGGTGATTCTTGT+GGG + chr8.1:85893268-85893287 MS.gene39709:CDS 35.0%
AGAATAAAGTCTTGATCTGG+TGG + chr8.1:85893530-85893549 MS.gene39709:intron 35.0%
AGCAATCTTTAGTATGTGAG+AGG - chr8.1:85895211-85895230 None:intergenic 35.0%
AGGAGACAATATCATTAGAG+AGG + chr8.1:85895083-85895102 MS.gene39709:CDS 35.0%
AGTTCTTCTCTCATTCTATG+AGG - chr8.1:85893929-85893948 None:intergenic 35.0%
GATAAAGGGTTCAGATCATA+TGG + chr8.1:85895158-85895177 MS.gene39709:CDS 35.0%
GTATCAATTATCGCCTAATG+AGG + chr8.1:85894041-85894060 MS.gene39709:CDS 35.0%
GTCTTAACCTCCTCATTTAT+AGG - chr8.1:85894394-85894413 None:intergenic 35.0%
TTAGAGAGGATATGCAGTTA+TGG + chr8.1:85895097-85895116 MS.gene39709:CDS 35.0%
TTCAGGTATCAATCCAATAC+AGG + chr8.1:85893174-85893193 MS.gene39709:CDS 35.0%
TTTGACACTTGGATCATCAT+TGG + chr8.1:85894957-85894976 MS.gene39709:CDS 35.0%
! ACAAGAATCACCTTTTCCTT+TGG - chr8.1:85893268-85893287 None:intergenic 35.0%
! ATTCTTGTGGGTCATAGTTT+TGG + chr8.1:85893280-85893299 MS.gene39709:CDS 35.0%
! CTTTTCCATAGCAACAGATA+AGG - chr8.1:85893314-85893333 None:intergenic 35.0%
!! CGTAACTTGGTGTATACATT+TGG - chr8.1:85894504-85894523 None:intergenic 35.0%
!!! AGAGGTGAGTTTTTTAGGTT+TGG - chr8.1:85895193-85895212 None:intergenic 35.0%
!!! ATGTGAGAGGTGAGTTTTTT+AGG - chr8.1:85895198-85895217 None:intergenic 35.0%
AAGCACTTTGTGCTTGTTCA+TGG + chr8.1:85893064-85893083 MS.gene39709:CDS 40.0%
AGAGTTACCAAGCAAAGGAA+TGG + chr8.1:85895030-85895049 MS.gene39709:CDS 40.0%
ATCACTTTCACCTCAGCATA+AGG - chr8.1:85895141-85895160 None:intergenic 40.0%
CTAAAAGACACCTTCATGGA+TGG - chr8.1:85894776-85894795 None:intergenic 40.0%
CTAAAAGACACTTTCATCGG+TGG + chr8.1:85894706-85894725 MS.gene39709:intron 40.0%
GAAATCACACCTTAAGGTGT+GGG - chr8.1:85894802-85894821 None:intergenic 40.0%
GACTTTCCCTATAAATGAGG+AGG + chr8.1:85894384-85894403 MS.gene39709:intron 40.0%
GAGGACTTTCCCTATAAATG+AGG + chr8.1:85894381-85894400 MS.gene39709:intron 40.0%
GAGTTTGGATCCAAACAACA+AGG - chr8.1:85894007-85894026 None:intergenic 40.0%
GATACCCTTATCTGTTGCTA+TGG + chr8.1:85893306-85893325 MS.gene39709:CDS 40.0%
GCAACTATGCTTAAATCAGC+TGG + chr8.1:85893121-85893140 MS.gene39709:CDS 40.0%
GCTGAGGTGAAAGTGATAAA+GGG + chr8.1:85895144-85895163 MS.gene39709:CDS 40.0%
GTTGCTAAAAGACACCTTCA+TGG - chr8.1:85894780-85894799 None:intergenic 40.0%
GTTGTTTGGATCCAAACTCT+TGG + chr8.1:85894008-85894027 MS.gene39709:CDS 40.0%
TACTCTTCCATTCCTTTGCT+TGG - chr8.1:85895040-85895059 None:intergenic 40.0%
TATGGATTCTCTTCCTCCAA+AGG + chr8.1:85893249-85893268 MS.gene39709:CDS 40.0%
TGAATCTCTTGGACCTGTAT+TGG - chr8.1:85893190-85893209 None:intergenic 40.0%
TGCTGAGGTGAAAGTGATAA+AGG + chr8.1:85895143-85895162 MS.gene39709:CDS 40.0%
TTCTCTTCCTCCAAAGGAAA+AGG + chr8.1:85893255-85893274 MS.gene39709:CDS 40.0%
! AGAATCACCTTTTCCTTTGG+AGG - chr8.1:85893265-85893284 None:intergenic 40.0%
! TTTTAGCAACCCACACCTTA+AGG + chr8.1:85894790-85894809 MS.gene39709:intron 40.0%
! TTTTAGCAATCCACACCTCA+AGG - chr8.1:85894692-85894711 None:intergenic 40.0%
!! ACAATTGATTTGGCTGCTTC+AGG + chr8.1:85893157-85893176 MS.gene39709:CDS 40.0%
!!! TTGTGGGTCATAGTTTTGGA+GGG + chr8.1:85893284-85893303 MS.gene39709:CDS 40.0%
CACTTGGATCATCATTGGTG+AGG + chr8.1:85894962-85894981 MS.gene39709:CDS 45.0%
CAGATGAGATGCCAAGAGTT+TGG - chr8.1:85894022-85894041 None:intergenic 45.0%
CATGCGTAGGATTTGACACT+TGG + chr8.1:85894946-85894965 MS.gene39709:intron 45.0%
GAAAATCACACCTTGAGGTG+TGG + chr8.1:85894679-85894698 MS.gene39709:intron 45.0%
GATCCAAACAACAAGGCAGT+TGG - chr8.1:85894000-85894019 None:intergenic 45.0%
GGAAATCACACCTTAAGGTG+TGG - chr8.1:85894803-85894822 None:intergenic 45.0%
TATACCAACACCATGCACCA+TGG - chr8.1:85893096-85893115 None:intergenic 45.0%
TCAACACAACGTGTCTTTCC+CGG - chr8.1:85893000-85893019 None:intergenic 45.0%
TTGCTAGAAGCCATCCATGA+AGG + chr8.1:85894763-85894782 MS.gene39709:intron 45.0%
TTTGTGCTTGTTCATGGAGC+TGG + chr8.1:85893070-85893089 MS.gene39709:CDS 45.0%
!! TGGTGCATGGTGTTGGTATA+AGG + chr8.1:85893096-85893115 MS.gene39709:CDS 45.0%
!!! CTTGTGGGTCATAGTTTTGG+AGG + chr8.1:85893283-85893302 MS.gene39709:CDS 45.0%
AAGGCAGTTGGAGGACTGTT+TGG - chr8.1:85893988-85894007 None:intergenic 50.0%
CCAAACAACAAGGCAGTTGG+AGG - chr8.1:85893997-85894016 None:intergenic 50.0%
GAGAACTGGTCCTTATGCTG+AGG + chr8.1:85895128-85895147 MS.gene39709:CDS 50.0%
!! CCTCCAACTGCCTTGTTGTT+TGG + chr8.1:85893994-85894013 MS.gene39709:CDS 50.0%
CTTGTTCATGGAGCTGGCCA+TGG + chr8.1:85893076-85893095 MS.gene39709:CDS 55.0%
ATGGAGCTGGCCATGGTGCA+TGG + chr8.1:85893083-85893102 MS.gene39709:CDS 60.0%
CTGGCCATGGTGCATGGTGT+TGG + chr8.1:85893089-85893108 MS.gene39709:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 85892989 85895242 85892989 ID=MS.gene39709
chr8.1 mRNA 85892989 85895242 85892989 ID=MS.gene39709.t1;Parent=MS.gene39709
chr8.1 exon 85892989 85893417 85892989 ID=MS.gene39709.t1.exon1;Parent=MS.gene39709.t1
chr8.1 CDS 85892989 85893417 85892989 ID=cds.MS.gene39709.t1;Parent=MS.gene39709.t1
chr8.1 exon 85893934 85894062 85893934 ID=MS.gene39709.t1.exon2;Parent=MS.gene39709.t1
chr8.1 CDS 85893934 85894062 85893934 ID=cds.MS.gene39709.t1;Parent=MS.gene39709.t1
chr8.1 exon 85894955 85895242 85894955 ID=MS.gene39709.t1.exon3;Parent=MS.gene39709.t1
chr8.1 CDS 85894955 85895242 85894955 ID=cds.MS.gene39709.t1;Parent=MS.gene39709.t1
Gene Sequence

>MS.gene39709

ATGTTTAACCGGGAAAGACACGTTGTGTTGATTCTTCTCTTCTTTATTCTTTCATTTTTCATTGGTGCTAATGGAAAGCACTTTGTGCTTGTTCATGGAGCTGGCCATGGTGCATGGTGTTGGTATAAGGTTGCAACTATGCTTAAATCAGCTGGTCATAATGTTAGCACAATTGATTTGGCTGCTTCAGGTATCAATCCAATACAGGTCCAAGAGATTCATTCAAATATTTCAAAATATTATGAACCTTTGATATCATTTATGGATTCTCTTCCTCCAAAGGAAAAGGTGATTCTTGTGGGTCATAGTTTTGGAGGGATACCCTTATCTGTTGCTATGGAAAAGTTCCCTAAGAAAATTTCTGTTGCAGTTTTTGTCACTGCATTAGTGATAAGTGAAACCCTTAATTTCACAACTGTAATTCAAGAGGTACTTTGCTTTGTCTTTTTCCCACATTTATATATTAGAAGGGGTATTCGGTCAAATTAAGACTCAAAATATGTGATGGATTAATAAGGTTACCCTCTTTTTCTTGAATAATAGAATAAAGTCTTGATCTGGTGGAAAAATTAAAAAGTTATCTTATAATAAATTTCCATTTCAGATGTTAGTAACCATGGTTATATATATTTATATTAATAAAAATTAGGAACAATTATATCATGTCCTTTGAATTTGATTATTATTTTTTAATTTAACCTTTATAATTTTGTTTTCTTACTGTGTGTGTATTCTGTTTATTCTGTTTATCTCAGTTTTGTAAAAAAAAAAAAAAACTACATAGTTGTTAAAATATTATCTAATACCTTTTATTAGAAATTAAAATGCAAAATTAAAATTATTAGGGTTCTTCATCTTATTTAACATATTCATCAACTCAGAATTTAAAGGAATTAATTTTAATTGTGGAAGCTTATTGTCACATTTTTTTTTATTGCCTCATAGAATGAGAGAAGAACTCAACAGAATCCACCACAGTTATTGTTCTTAAATGGACCAAACAGTCCTCCAACTGCCTTGTTGTTTGGATCCAAACTCTTGGCATCTCATCTGTATCAATTATCGCCTAATGAGGTAAACTTTTTTGCTGTTGATTGAAAATTTGAAATAAAGGTAAATAATTTTACTTTGATTGAATAATTTGACTGCAACTAATATTTACTTTAGTATTATATAATAATACTAAAGTAATTAGACTGAAAATTTCTATAATTTTGTTGTTGTTAATTTTTAAAGGGTTATTTCAAAGTTGGTTTTAAACCTTTAGATTTGTTGAAGTAATCTTGACTTTAATTAAAAATAAATTGTTTAAGAGAACGTGAATTTGAATCTTGTTCTAGAATAAATATTAGTTAGACTTTATTTACGTCCAAATTAAACTTCAAATTATAAGAGGACTTTCCCTATAAATGAGGAGGTTAAGACCAATAATCTATAAACTTATTTGTAAAATATTCAACTTCTCTTTTGAATGATCTCCCATTATGATATTTTCTCTTGATATCACTGGCACCAAATGTATACACCAAGTTACGTACTTTAACATATTATATATATATATATATATGGTTTTGTTAGAAGACATATTTTATGAAGGTGTCTTTTTAGCAAGTTATTCTATGAGCATTTGTTAAAAGACACCAACTAATTTTTATGAAGGTGTCTTTTAACAAAGTTATAACTAAAAAGTGAAAATCACACCTTGAGGTGTGGATTGCTAAAAGACACTTTCATCGGTGGCTTCTAGCAAAATTCATACATATATATATGGGTTTTGCTAGAAGCCATCCATGAAGGTGTCTTTTAGCAACCCACACCTTAAGGTGTGATTTCCACTTTTTAGTTATAACTTTGCTAAAAGACACCTTCATAAAAACTGTTTTCTAGCAAAACCATATATATATATATATATATATATATATATATATATATATATATATATATATATTGATTGTAACATGCGTAGGATTTGACACTTGGATCATCATTGGTGAGGCCACATCCTATCTTTAATGACAAAAAACTAGTATTGAAAGAAACAAGAGTTACCAAGCAAAGGAATGGAAGAGTACCAAAAGTCTTCATTATCAGCAAAGGAGACAATATCATTAGAGAGGATATGCAGTTATGGATAATTGAGAGAACTGGTCCTTATGCTGAGGTGAAAGTGATAAAGGGTTCAGATCATATGGTCATGTTCTCCAAACCTAAAAAACTCACCTCTCACATACTAAAGATTGCTCACAAATACTAA
Protein sequence

>MS.gene39709.t1

MFNRERHVVLILLFFILSFFIGANGKHFVLVHGAGHGAWCWYKVATMLKSAGHNVSTIDLAASGINPIQVQEIHSNISKYYEPLISFMDSLPPKEKVILVGHSFGGIPLSVAMEKFPKKISVAVFVTALVISETLNFTTVIQENERRTQQNPPQLLFLNGPNSPPTALLFGSKLLASHLYQLSPNEDLTLGSSLVRPHPIFNDKKLVLKETRVTKQRNGRVPKVFIISKGDNIIREDMQLWIIERTGPYAEVKVIKGSDHMVMFSKPKKLTSHILKIAHKY