Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39713.t1 | XP_013443930.1 | 87.6 | 234 | 18 | 1 | 1 | 234 | 40 | 262 | 8.60E-108 | 399.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39713.t1 | Q6RYA0 | 34.6 | 237 | 136 | 6 | 1 | 234 | 39 | 259 | 7.5e-28 | 125.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39713.t1 | A0A072TWQ1 | 87.6 | 234 | 18 | 1 | 1 | 234 | 40 | 262 | 6.2e-108 | 399.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047689 | MS.gene39713 | PPI |
| MS.gene87350 | MS.gene39713 | PPI |
| MS.gene39713 | MS.gene011884 | PPI |
| MS.gene010412 | MS.gene39713 | PPI |
| MS.gene39713 | MS.gene041151 | PPI |
| MS.gene28543 | MS.gene39713 | PPI |
| MS.gene39713 | MS.gene44962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39713.t1 | MTR_8g007670 | 87.607 | 234 | 18 | 1 | 1 | 234 | 40 | 262 | 7.26e-150 | 417 |
| MS.gene39713.t1 | MTR_8g007670 | 64.103 | 234 | 29 | 4 | 1 | 234 | 40 | 218 | 2.12e-94 | 276 |
| MS.gene39713.t1 | MTR_8g007675 | 55.983 | 234 | 91 | 2 | 1 | 234 | 65 | 286 | 3.71e-87 | 259 |
| MS.gene39713.t1 | MTR_8g008660 | 50.427 | 234 | 101 | 3 | 1 | 234 | 60 | 278 | 3.05e-74 | 226 |
| MS.gene39713.t1 | MTR_8g008505 | 50.000 | 234 | 104 | 3 | 1 | 234 | 61 | 281 | 9.32e-74 | 225 |
| MS.gene39713.t1 | MTR_3g464040 | 48.718 | 234 | 105 | 3 | 1 | 234 | 52 | 270 | 2.14e-73 | 224 |
| MS.gene39713.t1 | MTR_8g008500 | 49.367 | 237 | 105 | 4 | 1 | 234 | 60 | 284 | 2.56e-72 | 222 |
| MS.gene39713.t1 | MTR_5g018300 | 40.426 | 235 | 126 | 4 | 1 | 234 | 41 | 262 | 2.06e-51 | 168 |
| MS.gene39713.t1 | MTR_5g018320 | 39.574 | 235 | 128 | 4 | 1 | 234 | 38 | 259 | 5.24e-51 | 167 |
| MS.gene39713.t1 | MTR_5g018280 | 36.555 | 238 | 130 | 5 | 1 | 234 | 41 | 261 | 6.66e-43 | 146 |
| MS.gene39713.t1 | MTR_5g018365 | 33.613 | 238 | 133 | 8 | 1 | 234 | 45 | 261 | 2.90e-32 | 118 |
| MS.gene39713.t1 | MTR_5g018350 | 33.333 | 237 | 135 | 5 | 1 | 234 | 40 | 256 | 1.16e-31 | 117 |
| MS.gene39713.t1 | MTR_8g079120 | 32.627 | 236 | 138 | 6 | 1 | 234 | 44 | 260 | 2.05e-31 | 116 |
| MS.gene39713.t1 | MTR_3g005410 | 29.167 | 240 | 137 | 8 | 1 | 231 | 127 | 342 | 3.56e-22 | 93.6 |
| MS.gene39713.t1 | MTR_8g079120 | 36.154 | 130 | 77 | 3 | 1 | 128 | 86 | 211 | 7.96e-19 | 82.0 |
| MS.gene39713.t1 | MTR_7g015220 | 28.017 | 232 | 149 | 5 | 1 | 231 | 157 | 371 | 2.56e-18 | 83.2 |
| MS.gene39713.t1 | MTR_5g008130 | 43.038 | 79 | 45 | 0 | 156 | 234 | 2 | 80 | 1.83e-16 | 72.0 |
| MS.gene39713.t1 | MTR_5g068100 | 27.602 | 221 | 142 | 5 | 1 | 220 | 63 | 266 | 4.37e-16 | 75.9 |
| MS.gene39713.t1 | MTR_3g093730 | 25.339 | 221 | 146 | 5 | 1 | 220 | 69 | 271 | 1.84e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39713.t1 | AT3G50440 | 33.051 | 236 | 141 | 5 | 1 | 234 | 54 | 274 | 1.53e-33 | 122 |
| MS.gene39713.t1 | AT2G23590 | 31.602 | 231 | 136 | 7 | 1 | 231 | 60 | 268 | 5.42e-32 | 118 |
| MS.gene39713.t1 | AT2G23600 | 32.645 | 242 | 134 | 7 | 1 | 234 | 42 | 262 | 2.63e-31 | 116 |
| MS.gene39713.t1 | AT2G23600 | 32.645 | 242 | 134 | 7 | 1 | 234 | 57 | 277 | 3.61e-31 | 116 |
| MS.gene39713.t1 | AT2G23610 | 33.333 | 237 | 139 | 6 | 1 | 234 | 42 | 262 | 5.07e-29 | 110 |
| MS.gene39713.t1 | AT2G23620 | 32.231 | 242 | 135 | 8 | 1 | 234 | 42 | 262 | 5.71e-28 | 107 |
| MS.gene39713.t1 | AT5G10300 | 30.638 | 235 | 146 | 4 | 1 | 234 | 39 | 257 | 2.29e-25 | 100 |
| MS.gene39713.t1 | AT4G37150 | 29.362 | 235 | 150 | 5 | 1 | 234 | 36 | 255 | 1.10e-24 | 98.6 |
| MS.gene39713.t1 | AT1G33990 | 30.380 | 237 | 138 | 7 | 1 | 231 | 130 | 345 | 1.49e-24 | 100 |
| MS.gene39713.t1 | AT2G23550 | 29.412 | 238 | 148 | 6 | 1 | 234 | 41 | 262 | 7.09e-24 | 96.7 |
| MS.gene39713.t1 | AT2G23550 | 29.412 | 238 | 148 | 6 | 1 | 234 | 48 | 269 | 7.11e-24 | 96.7 |
| MS.gene39713.t1 | AT2G23580 | 29.958 | 237 | 148 | 6 | 1 | 234 | 41 | 262 | 1.57e-23 | 95.5 |
| MS.gene39713.t1 | AT4G09900 | 30.932 | 236 | 138 | 8 | 1 | 231 | 131 | 346 | 3.71e-22 | 93.6 |
| MS.gene39713.t1 | AT3G29770 | 30.172 | 232 | 144 | 5 | 1 | 231 | 171 | 385 | 6.29e-21 | 90.5 |
| MS.gene39713.t1 | AT2G23560 | 27.660 | 235 | 153 | 6 | 1 | 234 | 41 | 259 | 1.50e-20 | 87.8 |
| MS.gene39713.t1 | AT2G23600 | 35.294 | 136 | 74 | 4 | 1 | 128 | 57 | 186 | 1.55e-17 | 77.8 |
| MS.gene39713.t1 | AT1G26360 | 27.155 | 232 | 151 | 4 | 1 | 231 | 222 | 436 | 9.40e-17 | 79.0 |
| MS.gene39713.t1 | AT2G23550 | 28.713 | 202 | 125 | 5 | 36 | 234 | 48 | 233 | 1.32e-15 | 73.9 |
| MS.gene39713.t1 | AT1G69240 | 25.214 | 234 | 155 | 6 | 1 | 231 | 220 | 436 | 1.47e-15 | 75.5 |
| MS.gene39713.t1 | AT2G23610 | 40.000 | 100 | 58 | 2 | 1 | 99 | 42 | 140 | 2.80e-15 | 72.4 |
| MS.gene39713.t1 | AT4G37140 | 44.118 | 68 | 38 | 0 | 1 | 68 | 36 | 103 | 2.04e-14 | 68.2 |
| MS.gene39713.t1 | AT5G58310 | 24.268 | 239 | 155 | 5 | 1 | 231 | 38 | 258 | 2.44e-14 | 70.9 |
| MS.gene39713.t1 | AT3G10870 | 24.434 | 221 | 152 | 4 | 1 | 220 | 53 | 259 | 5.50e-14 | 70.1 |
| MS.gene39713.t1 | AT5G10300 | 44.118 | 68 | 38 | 0 | 1 | 68 | 39 | 106 | 4.43e-13 | 66.2 |
| MS.gene39713.t1 | AT4G16690 | 26.638 | 229 | 148 | 5 | 1 | 228 | 45 | 254 | 1.52e-12 | 65.9 |
| MS.gene39713.t1 | AT2G23570 | 29.293 | 198 | 113 | 9 | 44 | 234 | 1 | 178 | 4.86e-12 | 62.8 |
| MS.gene39713.t1 | AT2G23580 | 31.538 | 130 | 86 | 3 | 1 | 127 | 41 | 170 | 6.72e-12 | 63.2 |
Find 35 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTTTGATGACATTTA+TGG | 0.116749 | 8.1:+85974777 | MS.gene39713:CDS |
| TAAATCAGCATCGCTCAAAA+AGG | 0.284700 | 8.1:-85976026 | None:intergenic |
| TGAACTTCTTGCATCTGCTT+TGG | 0.342274 | 8.1:-85974736 | None:intergenic |
| CAAATTCGATTTCTATATGC+AGG | 0.415716 | 8.1:+85975959 | MS.gene39713:CDS |
| GAGAGGATTGGAGCTTTGTC+TGG | 0.423859 | 8.1:-85975778 | None:intergenic |
| GTTCTTGTTGGTCGTAGTCT+TGG | 0.427378 | 8.1:+85974826 | MS.gene39713:CDS |
| TTACCTGAGATGGTGATAAC+TGG | 0.434164 | 8.1:-85975837 | None:intergenic |
| TTTGACACTTGCTTTATCTC+TGG | 0.437434 | 8.1:+85975983 | MS.gene39713:CDS |
| CTTGTTGGTCGTAGTCTTGG+AGG | 0.446712 | 8.1:+85974829 | MS.gene39713:CDS |
| GAGGAGAAAGTAGTTCTTGT+TGG | 0.455636 | 8.1:+85974814 | MS.gene39713:CDS |
| TGGTGATAACTGGTACATTC+TGG | 0.466524 | 8.1:-85975827 | None:intergenic |
| GACAAAATTTCATCATTGAC+GGG | 0.468240 | 8.1:+85975755 | MS.gene39713:CDS |
| GAGAAGAATAGGCTCAGCTT+TGG | 0.471989 | 8.1:+85975729 | MS.gene39713:CDS |
| GATCGAGGGTTCAGATCATA+TGG | 0.477216 | 8.1:+85976192 | MS.gene39713:CDS |
| ATGTAGCGAAGGAGAAGAAT+AGG | 0.490240 | 8.1:+85975718 | MS.gene39713:intron |
| CACTTGCTTTATCTCTGGTA+CGG | 0.492239 | 8.1:+85975988 | MS.gene39713:CDS |
| GTTGTCTGTGTCTATTGCTA+TGG | 0.493669 | 8.1:+85974852 | MS.gene39713:CDS |
| AGACAAAATTTCATCATTGA+CGG | 0.494233 | 8.1:+85975754 | MS.gene39713:CDS |
| TAAATGTCATCAAAGGTTGA+TGG | 0.511909 | 8.1:-85974774 | None:intergenic |
| GAATGGATAATTGAGACAAC+CGG | 0.517534 | 8.1:+85976148 | MS.gene39713:CDS |
| GTACCAGTTATCACCATCTC+AGG | 0.520634 | 8.1:+85975834 | MS.gene39713:CDS |
| AGTCCGTCAGACGAGAGGAT+TGG | 0.527944 | 8.1:-85975790 | None:intergenic |
| TATGGAGTCACTTCCTTGTG+AGG | 0.541105 | 8.1:+85974795 | MS.gene39713:CDS |
| TTGTTGGTCGTAGTCTTGGA+GGG | 0.546131 | 8.1:+85974830 | MS.gene39713:CDS |
| TTTCACTTTAGCATATGGAC+CGG | 0.551824 | 8.1:-85976167 | None:intergenic |
| GACTCCATAAATGTCATCAA+AGG | 0.577498 | 8.1:-85974781 | None:intergenic |
| GCTCCAATCCTCTCGTCTGA+CGG | 0.581690 | 8.1:+85975787 | MS.gene39713:CDS |
| TGCTAAAGTGAAAATGATCG+AGG | 0.599047 | 8.1:+85976177 | MS.gene39713:CDS |
| ACTGTTACAAATGAAAACAA+TGG | 0.604853 | 8.1:+85976064 | MS.gene39713:CDS |
| AATCGAGTCCGTCAGACGAG+AGG | 0.609179 | 8.1:-85975795 | None:intergenic |
| GAAGAAAAGCACGATAAGTG+AGG | 0.624099 | 8.1:-85974936 | None:intergenic |
| GCTAAAGTGAAAATGATCGA+GGG | 0.635853 | 8.1:+85976178 | MS.gene39713:CDS |
| AGAACTACTTTCTCCTCACA+AGG | 0.635958 | 8.1:-85974808 | None:intergenic |
| TACAAATGAAAACAATGGAA+TGG | 0.636369 | 8.1:+85976069 | MS.gene39713:CDS |
| GCACTAGACATGGCTGCTTG+TGG | 0.636797 | 8.1:+85974706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTAAGATTTTAAAAT+GGG | + | chr8.1:85975314-85975333 | MS.gene39713:intron | 10.0% |
| !!! | TGATATTTAAGATTTTAAAA+TGG | + | chr8.1:85975313-85975332 | MS.gene39713:intron | 10.0% |
| !! | ATTTGTAAGGAAAAAAAATT+AGG | + | chr8.1:85975065-85975084 | MS.gene39713:intron | 15.0% |
| !! | CAAAACAAAAAAAAAAATAG+TGG | + | chr8.1:85975433-85975452 | MS.gene39713:intron | 15.0% |
| !! | GAGAAAATATTGAAATTATT+TGG | + | chr8.1:85975497-85975516 | MS.gene39713:intron | 15.0% |
| !! | TCAAAATACATAATATGAAT+TGG | - | chr8.1:85975873-85975892 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTCCTTACAAA+TGG | - | chr8.1:85975066-85975085 | None:intergenic | 15.0% |
| !!! | TTAAATATCATAATTTTCGA+AGG | - | chr8.1:85975303-85975322 | None:intergenic | 15.0% |
| !! | AAAAATATTCATCAAATCAC+GGG | - | chr8.1:85975686-85975705 | None:intergenic | 20.0% |
| !! | AGATTAGACAATTTATATTC+TGG | - | chr8.1:85975212-85975231 | None:intergenic | 20.0% |
| !! | CAAAAATATTCATCAAATCA+CGG | - | chr8.1:85975687-85975706 | None:intergenic | 20.0% |
| !! | TTGAAAAATAAGAATGATTG+AGG | + | chr8.1:85975402-85975421 | MS.gene39713:intron | 20.0% |
| !!! | AAACAAAAGATTTTCAAGAA+TGG | + | chr8.1:85976131-85976150 | MS.gene39713:CDS | 20.0% |
| !!! | TATATTCTGGCATTATATTT+TGG | - | chr8.1:85975199-85975218 | None:intergenic | 20.0% |
| !!! | TTCAATATTTTCTCAAACTA+TGG | - | chr8.1:85975491-85975510 | None:intergenic | 20.0% |
| ! | ACTGTTACAAATGAAAACAA+TGG | + | chr8.1:85976064-85976083 | MS.gene39713:CDS | 25.0% |
| ! | AGACAAAATTTCATCATTGA+CGG | + | chr8.1:85975754-85975773 | MS.gene39713:CDS | 25.0% |
| ! | TACAAAAGTTGACACATAAA+CGG | - | chr8.1:85975168-85975187 | None:intergenic | 25.0% |
| ! | TACAAATGAAAACAATGGAA+TGG | + | chr8.1:85976069-85976088 | MS.gene39713:CDS | 25.0% |
| !! | ATCATTTTCACTTTAGCATA+TGG | - | chr8.1:85976175-85976194 | None:intergenic | 25.0% |
| !! | ATTTTTCTATTTACCTGAGA+TGG | - | chr8.1:85975850-85975869 | None:intergenic | 25.0% |
| !! | CGTGATTTGATGAATATTTT+TGG | + | chr8.1:85975685-85975704 | MS.gene39713:intron | 25.0% |
| !! | TACACTTTTGTATCAAAACT+TGG | + | chr8.1:85975141-85975160 | MS.gene39713:intron | 25.0% |
| AATAGTGGTATGTATCTACT+AGG | + | chr8.1:85975448-85975467 | MS.gene39713:intron | 30.0% | |
| ACAGTTGTATGTGTGAATTT+AGG | + | chr8.1:85975607-85975626 | MS.gene39713:intron | 30.0% | |
| CAAATTCGATTTCTATATGC+AGG | + | chr8.1:85975959-85975978 | MS.gene39713:CDS | 30.0% | |
| CAGTTGTATGTGTGAATTTA+GGG | + | chr8.1:85975608-85975627 | MS.gene39713:intron | 30.0% | |
| CATAACTACGTAAATTCAGT+AGG | - | chr8.1:85975116-85975135 | None:intergenic | 30.0% | |
| GACAAAATTTCATCATTGAC+GGG | + | chr8.1:85975755-85975774 | MS.gene39713:CDS | 30.0% | |
| GCCAATCAAAATACTCATTA+GGG | + | chr8.1:85975010-85975029 | MS.gene39713:intron | 30.0% | |
| TAAATGTCATCAAAGGTTGA+TGG | - | chr8.1:85974777-85974796 | None:intergenic | 30.0% | |
| TGCCAATCAAAATACTCATT+AGG | + | chr8.1:85975009-85975028 | MS.gene39713:intron | 30.0% | |
| ! | TAGACTAAACACTTCTAGTT+AGG | + | chr8.1:85975567-85975586 | MS.gene39713:intron | 30.0% |
| ! | TCAACCTTTGATGACATTTA+TGG | + | chr8.1:85974777-85974796 | MS.gene39713:CDS | 30.0% |
| ! | TCAGAGATGATGAAGATTTT+AGG | - | chr8.1:85976097-85976116 | None:intergenic | 30.0% |
| ! | TTTCTCAAACTATGGACTAA+TGG | - | chr8.1:85975483-85975502 | None:intergenic | 30.0% |
| !! | TGTTTTTATCACTTCGTCAA+AGG | + | chr8.1:85975634-85975653 | MS.gene39713:intron | 30.0% |
| !!! | TCCCTAATGAGTATTTTGAT+TGG | - | chr8.1:85975014-85975033 | None:intergenic | 30.0% |
| !!! | TGATGAATATTTTTGGTGTG+CGG | + | chr8.1:85975692-85975711 | MS.gene39713:intron | 30.0% |
| AAATCAGCATCGCTCAAAAA+GGG | - | chr8.1:85976028-85976047 | None:intergenic | 35.0% | |
| CCTTACAAATGGAAAGTCAA+TGG | - | chr8.1:85975055-85975074 | None:intergenic | 35.0% | |
| GAATGGATAATTGAGACAAC+CGG | + | chr8.1:85976148-85976167 | MS.gene39713:CDS | 35.0% | |
| GACTCCATAAATGTCATCAA+AGG | - | chr8.1:85974784-85974803 | None:intergenic | 35.0% | |
| GCTAAAGTGAAAATGATCGA+GGG | + | chr8.1:85976178-85976197 | MS.gene39713:CDS | 35.0% | |
| TAAATCAGCATCGCTCAAAA+AGG | - | chr8.1:85976029-85976048 | None:intergenic | 35.0% | |
| TGCTAAAGTGAAAATGATCG+AGG | + | chr8.1:85976177-85976196 | MS.gene39713:CDS | 35.0% | |
| TTGTATGTGTGAATTTAGGG+TGG | + | chr8.1:85975611-85975630 | MS.gene39713:intron | 35.0% | |
| TTTCACTTTAGCATATGGAC+CGG | - | chr8.1:85976170-85976189 | None:intergenic | 35.0% | |
| TTTGACACTTGCTTTATCTC+TGG | + | chr8.1:85975983-85976002 | MS.gene39713:CDS | 35.0% | |
| ! | ACTGCAACAAAGATTTTGTG+AGG | - | chr8.1:85974886-85974905 | None:intergenic | 35.0% |
| ! | CTGCAACAAAGATTTTGTGA+GGG | - | chr8.1:85974885-85974904 | None:intergenic | 35.0% |
| ! | TTATCGTGCTTTTCTTCAAG+AGG | + | chr8.1:85974942-85974961 | MS.gene39713:CDS | 35.0% |
| !! | AGAGCTAAGTTTTGTAGGTT+TGG | - | chr8.1:85976227-85976246 | None:intergenic | 35.0% |
| !! | AGTTCAGAGCTAAGTTTTGT+AGG | - | chr8.1:85976232-85976251 | None:intergenic | 35.0% |
| !! | CCATTGACTTTCCATTTGTA+AGG | + | chr8.1:85975052-85975071 | MS.gene39713:intron | 35.0% |
| AGAACTACTTTCTCCTCACA+AGG | - | chr8.1:85974811-85974830 | None:intergenic | 40.0% | |
| ATGTAGCGAAGGAGAAGAAT+AGG | + | chr8.1:85975718-85975737 | MS.gene39713:intron | 40.0% | |
| CACTTGCTTTATCTCTGGTA+CGG | + | chr8.1:85975988-85976007 | MS.gene39713:CDS | 40.0% | |
| GAGGAGAAAGTAGTTCTTGT+TGG | + | chr8.1:85974814-85974833 | MS.gene39713:CDS | 40.0% | |
| GTTGTCTGTGTCTATTGCTA+TGG | + | chr8.1:85974852-85974871 | MS.gene39713:CDS | 40.0% | |
| TGAACTTCTTGCATCTGCTT+TGG | - | chr8.1:85974739-85974758 | None:intergenic | 40.0% | |
| TGGTGATAACTGGTACATTC+TGG | - | chr8.1:85975830-85975849 | None:intergenic | 40.0% | |
| TTACCTGAGATGGTGATAAC+TGG | - | chr8.1:85975840-85975859 | None:intergenic | 40.0% | |
| ! | GAAGAAAAGCACGATAAGTG+AGG | - | chr8.1:85974939-85974958 | None:intergenic | 40.0% |
| GAGAAGAATAGGCTCAGCTT+TGG | + | chr8.1:85975729-85975748 | MS.gene39713:CDS | 45.0% | |
| GATCGAGGGTTCAGATCATA+TGG | + | chr8.1:85976192-85976211 | MS.gene39713:CDS | 45.0% | |
| GTACCAGTTATCACCATCTC+AGG | + | chr8.1:85975834-85975853 | MS.gene39713:CDS | 45.0% | |
| GTTCTTGTTGGTCGTAGTCT+TGG | + | chr8.1:85974826-85974845 | MS.gene39713:CDS | 45.0% | |
| TATGGAGTCACTTCCTTGTG+AGG | + | chr8.1:85974795-85974814 | MS.gene39713:CDS | 45.0% | |
| TCGCTCAAAAAGGGAGGTAA+TGG | - | chr8.1:85976019-85976038 | None:intergenic | 45.0% | |
| ! | TTGTTGGTCGTAGTCTTGGA+GGG | + | chr8.1:85974830-85974849 | MS.gene39713:CDS | 45.0% |
| TCAGCATCGCTCAAAAAGGG+AGG | - | chr8.1:85976025-85976044 | None:intergenic | 50.0% | |
| ! | CTTGTTGGTCGTAGTCTTGG+AGG | + | chr8.1:85974829-85974848 | MS.gene39713:CDS | 50.0% |
| ! | GAGAGGATTGGAGCTTTGTC+TGG | - | chr8.1:85975781-85975800 | None:intergenic | 50.0% |
| AATCGAGTCCGTCAGACGAG+AGG | - | chr8.1:85975798-85975817 | None:intergenic | 55.0% | |
| AGTCCGTCAGACGAGAGGAT+TGG | - | chr8.1:85975793-85975812 | None:intergenic | 55.0% | |
| GCTCCAATCCTCTCGTCTGA+CGG | + | chr8.1:85975787-85975806 | MS.gene39713:CDS | 55.0% | |
| GTGTGCGGAACATGTAGCGA+AGG | + | chr8.1:85975707-85975726 | MS.gene39713:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 85974715 | 85976276 | 85974715 | ID=MS.gene39713 |
| chr8.1 | mRNA | 85974715 | 85976276 | 85974715 | ID=MS.gene39713.t1;Parent=MS.gene39713 |
| chr8.1 | exon | 85974715 | 85974963 | 85974715 | ID=MS.gene39713.t1.exon1;Parent=MS.gene39713.t1 |
| chr8.1 | CDS | 85974715 | 85974963 | 85974715 | ID=cds.MS.gene39713.t1;Parent=MS.gene39713.t1 |
| chr8.1 | exon | 85975724 | 85975855 | 85975724 | ID=MS.gene39713.t1.exon2;Parent=MS.gene39713.t1 |
| chr8.1 | CDS | 85975724 | 85975855 | 85975724 | ID=cds.MS.gene39713.t1;Parent=MS.gene39713.t1 |
| chr8.1 | exon | 85975953 | 85976276 | 85975953 | ID=MS.gene39713.t1.exon3;Parent=MS.gene39713.t1 |
| chr8.1 | CDS | 85975953 | 85976276 | 85975953 | ID=cds.MS.gene39713.t1;Parent=MS.gene39713.t1 |
| Gene Sequence |
| Protein sequence |
