Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40035.t1 | XP_024636266.1 | 97 | 300 | 9 | 0 | 1 | 300 | 1 | 300 | 2.90E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40035.t1 | Q6NM73 | 70.8 | 281 | 77 | 2 | 25 | 300 | 27 | 307 | 1.3e-96 | 354.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40035.t1 | G7I3U3 | 97.0 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 8.7e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049596 | MS.gene40035 | 0.800058 | 1.72E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene40035 | 0.819774 | 9.73E-53 | -1.69E-46 |
| MS.gene051885 | MS.gene40035 | 0.814083 | 1.85E-51 | -1.69E-46 |
| MS.gene055331 | MS.gene40035 | 0.891492 | 3.78E-74 | -1.69E-46 |
| MS.gene055764 | MS.gene40035 | 0.803733 | 3.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40035.t1 | MTR_1g073320 | 97.987 | 298 | 6 | 0 | 1 | 298 | 1 | 298 | 0.0 | 592 |
| MS.gene40035.t1 | MTR_1g044580 | 69.868 | 302 | 75 | 3 | 1 | 298 | 1 | 290 | 1.39e-143 | 421 |
| MS.gene40035.t1 | MTR_7g098410 | 48.097 | 289 | 133 | 4 | 11 | 298 | 10 | 282 | 5.40e-87 | 262 |
| MS.gene40035.t1 | MTR_1g080350 | 38.796 | 299 | 160 | 8 | 12 | 300 | 10 | 295 | 3.24e-64 | 204 |
| MS.gene40035.t1 | MTR_3g065370 | 31.164 | 292 | 171 | 6 | 6 | 293 | 5 | 270 | 2.72e-35 | 129 |
| MS.gene40035.t1 | MTR_5g078030 | 29.553 | 291 | 185 | 5 | 9 | 297 | 4 | 276 | 1.43e-34 | 127 |
| MS.gene40035.t1 | MTR_8g104990 | 29.455 | 275 | 179 | 5 | 26 | 297 | 18 | 280 | 7.01e-32 | 120 |
| MS.gene40035.t1 | MTR_1g044560 | 42.268 | 97 | 56 | 0 | 144 | 240 | 28 | 124 | 4.07e-18 | 79.3 |
| MS.gene40035.t1 | MTR_1g104890 | 25.564 | 266 | 171 | 8 | 47 | 296 | 54 | 308 | 1.46e-16 | 79.0 |
| MS.gene40035.t1 | MTR_7g052020 | 23.457 | 243 | 170 | 4 | 8 | 241 | 4 | 239 | 3.86e-16 | 77.0 |
| MS.gene40035.t1 | MTR_1g104890 | 23.920 | 301 | 202 | 8 | 12 | 296 | 19 | 308 | 5.15e-16 | 78.2 |
| MS.gene40035.t1 | MTR_1g104890 | 25.564 | 266 | 171 | 8 | 47 | 296 | 54 | 308 | 6.74e-16 | 78.2 |
| MS.gene40035.t1 | MTR_1g104890 | 25.769 | 260 | 166 | 8 | 47 | 290 | 54 | 302 | 9.08e-16 | 77.8 |
| MS.gene40035.t1 | MTR_1g105615 | 25.101 | 247 | 160 | 9 | 9 | 237 | 11 | 250 | 9.97e-15 | 74.7 |
| MS.gene40035.t1 | MTR_5g005480 | 26.168 | 214 | 143 | 4 | 38 | 237 | 35 | 247 | 2.48e-14 | 73.6 |
| MS.gene40035.t1 | MTR_3g064080 | 27.232 | 224 | 150 | 6 | 21 | 234 | 18 | 238 | 2.98e-14 | 73.6 |
| MS.gene40035.t1 | MTR_6g463830 | 23.839 | 323 | 189 | 11 | 1 | 281 | 1 | 308 | 5.77e-14 | 72.8 |
| MS.gene40035.t1 | MTR_6g055960 | 23.462 | 260 | 159 | 5 | 44 | 270 | 33 | 285 | 9.51e-14 | 72.0 |
| MS.gene40035.t1 | MTR_6g463400 | 23.413 | 252 | 173 | 6 | 1 | 237 | 1 | 247 | 1.76e-13 | 70.9 |
| MS.gene40035.t1 | MTR_5g068190 | 25.103 | 243 | 160 | 9 | 9 | 236 | 9 | 244 | 2.97e-12 | 67.4 |
| MS.gene40035.t1 | MTR_5g005530 | 23.140 | 242 | 161 | 6 | 68 | 292 | 68 | 301 | 3.72e-12 | 67.0 |
| MS.gene40035.t1 | MTR_1g105650 | 25.108 | 231 | 136 | 6 | 32 | 237 | 33 | 251 | 8.12e-12 | 66.2 |
| MS.gene40035.t1 | MTR_8g041710 | 22.635 | 296 | 202 | 9 | 9 | 291 | 9 | 290 | 9.43e-12 | 65.9 |
| MS.gene40035.t1 | MTR_6g463710 | 25.630 | 238 | 144 | 7 | 23 | 237 | 22 | 249 | 1.28e-11 | 65.5 |
| MS.gene40035.t1 | MTR_6g057770 | 25.630 | 238 | 144 | 7 | 23 | 237 | 22 | 249 | 1.43e-11 | 65.5 |
| MS.gene40035.t1 | MTR_3g011910 | 23.843 | 281 | 171 | 10 | 5 | 252 | 10 | 280 | 2.50e-11 | 64.3 |
| MS.gene40035.t1 | MTR_6g053000 | 25.000 | 240 | 161 | 7 | 11 | 236 | 6 | 240 | 5.25e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40035.t1 | AT1G04520 | 67.667 | 300 | 88 | 3 | 8 | 300 | 10 | 307 | 6.15e-136 | 387 |
| MS.gene40035.t1 | AT2G33330 | 65.246 | 305 | 100 | 4 | 1 | 300 | 1 | 304 | 4.35e-134 | 382 |
| MS.gene40035.t1 | AT5G43980 | 43.793 | 290 | 137 | 5 | 25 | 299 | 20 | 298 | 5.83e-76 | 234 |
| MS.gene40035.t1 | AT3G04370 | 35.948 | 306 | 154 | 6 | 24 | 299 | 25 | 318 | 3.00e-61 | 197 |
| MS.gene40035.t1 | AT3G04370 | 35.410 | 305 | 156 | 5 | 24 | 299 | 25 | 317 | 3.70e-61 | 197 |
| MS.gene40035.t1 | AT5G37660 | 31.849 | 292 | 180 | 6 | 11 | 300 | 15 | 289 | 3.01e-34 | 126 |
| MS.gene40035.t1 | AT5G37660 | 30.996 | 271 | 168 | 6 | 11 | 279 | 15 | 268 | 3.91e-34 | 126 |
| MS.gene40035.t1 | AT3G60720 | 28.676 | 272 | 166 | 6 | 33 | 296 | 29 | 280 | 2.01e-31 | 119 |
| MS.gene40035.t1 | AT2G01660 | 31.119 | 286 | 174 | 9 | 11 | 289 | 7 | 276 | 1.45e-30 | 116 |
| MS.gene40035.t1 | AT2G01660 | 31.119 | 286 | 174 | 9 | 11 | 289 | 7 | 276 | 1.48e-30 | 116 |
| MS.gene40035.t1 | AT3G60720 | 28.519 | 270 | 165 | 6 | 33 | 294 | 29 | 278 | 1.58e-30 | 116 |
| MS.gene40035.t1 | AT1G70690 | 28.947 | 304 | 184 | 8 | 10 | 299 | 9 | 294 | 1.71e-26 | 106 |
| MS.gene40035.t1 | AT2G01660 | 31.034 | 232 | 142 | 7 | 26 | 250 | 20 | 240 | 4.20e-26 | 104 |
| MS.gene40035.t1 | AT3G60720 | 27.404 | 208 | 140 | 4 | 33 | 233 | 29 | 232 | 1.58e-23 | 97.1 |
| MS.gene40035.t1 | AT5G48540 | 23.041 | 217 | 153 | 5 | 34 | 237 | 24 | 239 | 1.22e-16 | 78.6 |
| MS.gene40035.t1 | AT5G40380 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 2.01e-15 | 76.6 |
| MS.gene40035.t1 | AT5G40380 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 2.85e-15 | 76.3 |
| MS.gene40035.t1 | AT5G40380 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 2.87e-15 | 76.6 |
| MS.gene40035.t1 | AT4G05200 | 22.526 | 293 | 208 | 8 | 12 | 288 | 11 | 300 | 3.73e-13 | 70.1 |
| MS.gene40035.t1 | AT4G05200 | 22.526 | 293 | 208 | 8 | 12 | 288 | 29 | 318 | 4.13e-13 | 70.1 |
| MS.gene40035.t1 | AT5G41290 | 24.468 | 282 | 192 | 6 | 6 | 272 | 5 | 280 | 9.72e-13 | 67.8 |
Find 53 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCAAGAGTTCAGCTTTC+AGG | 0.163538 | 1.4:-59890878 | MS.gene40035:CDS |
| TCTGGTTACTCTTCATCTTT+TGG | 0.217123 | 1.4:-59890464 | MS.gene40035:CDS |
| GAATGTGGAAGTTCTATTTC+AGG | 0.278336 | 1.4:-59890584 | MS.gene40035:CDS |
| AAGACTGTGGCAATAATATT+AGG | 0.324267 | 1.4:-59889957 | MS.gene40035:CDS |
| GGTGGTGGATCATCTTCTTC+TGG | 0.327218 | 1.4:-59890482 | MS.gene40035:CDS |
| CCACCCTTTGGAACCCCATT+AGG | 0.331693 | 1.4:+59890518 | None:intergenic |
| AGATACCTGTGATGCTGTTT+TGG | 0.333639 | 1.4:+59890993 | None:intergenic |
| TAGACCAAAGTTGTGTAATC+AGG | 0.371990 | 1.4:+59891145 | None:intergenic |
| AAGATGATGATTTAGAGAAA+TGG | 0.375671 | 1.4:+59891170 | None:intergenic |
| GATTGTGAATATGCACCATT+TGG | 0.394933 | 1.4:+59891091 | None:intergenic |
| AGATGATGATTTAGAGAAAT+GGG | 0.405156 | 1.4:+59891171 | None:intergenic |
| TACATGCTGTATGAGGTTGC+TGG | 0.420117 | 1.4:-59890851 | MS.gene40035:CDS |
| AAGGGTGGTCATTCTTCATC+TGG | 0.421635 | 1.4:-59890503 | MS.gene40035:CDS |
| TTCTCCTGATTACACAACTT+TGG | 0.429549 | 1.4:-59891149 | MS.gene40035:CDS |
| GAAGAACAAAAGAAGAAAGA+GGG | 0.456695 | 1.4:+59891207 | None:intergenic |
| TTATCAAGCTTTGTATGTGA+TGG | 0.456880 | 1.4:-59890681 | MS.gene40035:CDS |
| AGGTTCTTCAAAACAACAAC+TGG | 0.461798 | 1.4:-59891022 | MS.gene40035:CDS |
| CATAGTTTGTCTGAGAGAAC+TGG | 0.468018 | 1.4:+59890914 | None:intergenic |
| ACAACAAATGCTGCTGGAAG+AGG | 0.468669 | 1.4:-59890782 | MS.gene40035:CDS |
| GGTCAGTGTGAGGGTGATGT+TGG | 0.474760 | 1.4:-59890659 | MS.gene40035:CDS |
| GATGAAGAATGACCACCCTT+TGG | 0.474944 | 1.4:+59890506 | None:intergenic |
| AATGGTGTTGTGAGTAATCA+TGG | 0.477834 | 1.4:-59890719 | MS.gene40035:CDS |
| AAGCTGAACTCTTGCAGAGA+TGG | 0.484956 | 1.4:+59890883 | None:intergenic |
| CAGATTCTCTTCAAGACTTG+TGG | 0.485266 | 1.4:-59890806 | MS.gene40035:CDS |
| TGAAGAACAAAAGAAGAAAG+AGG | 0.494984 | 1.4:+59891206 | None:intergenic |
| TTCAAAACAACAACTGGTAA+TGG | 0.498720 | 1.4:-59891016 | MS.gene40035:CDS |
| TGTGGAACAACAAATGCTGC+TGG | 0.508236 | 1.4:-59890788 | MS.gene40035:CDS |
| TTGTGAGATCTCCTCTGCAT+TGG | 0.514398 | 1.4:+59890969 | None:intergenic |
| GGTCATTCTTCATCTGGTGG+TGG | 0.515877 | 1.4:-59890497 | MS.gene40035:CDS |
| AATGGCCAAAACAGCATCAC+AGG | 0.526879 | 1.4:-59890998 | MS.gene40035:CDS |
| GCTATGACAGGACAAAATAC+AGG | 0.532912 | 1.4:-59889981 | MS.gene40035:intron |
| TTATCCTAATGGGGTTCCAA+AGG | 0.535083 | 1.4:-59890522 | MS.gene40035:CDS |
| TATCAAGCTTTGTATGTGAT+GGG | 0.536644 | 1.4:-59890680 | MS.gene40035:CDS |
| AGGTTGTTACATGCTGTATG+AGG | 0.538390 | 1.4:-59890858 | MS.gene40035:CDS |
| GATGTTGGTGATTCTGATTG+TGG | 0.539277 | 1.4:-59890644 | MS.gene40035:CDS |
| TATCCTAATGGGGTTCCAAA+GGG | 0.541401 | 1.4:-59890521 | MS.gene40035:CDS |
| GAAACATTCACAGATCCAAA+TGG | 0.542666 | 1.4:-59891106 | MS.gene40035:CDS |
| TTATATTCTTGCTATTTGCA+AGG | 0.544026 | 1.4:-59889908 | MS.gene40035:CDS |
| TACACAACTTTGGTCTACAA+AGG | 0.569043 | 1.4:-59891139 | MS.gene40035:CDS |
| CAACAAATGCTGCTGGAAGA+GGG | 0.576463 | 1.4:-59890781 | MS.gene40035:CDS |
| ATCTGCATCCCTGAAACTTG+AGG | 0.576526 | 1.4:+59890824 | None:intergenic |
| TATGTGATGGGTCAGTGTGA+GGG | 0.578918 | 1.4:-59890668 | MS.gene40035:CDS |
| GGTGGTCATTCTTCATCTGG+TGG | 0.587392 | 1.4:-59890500 | MS.gene40035:CDS |
| GTATGTGATGGGTCAGTGTG+AGG | 0.592839 | 1.4:-59890669 | MS.gene40035:CDS |
| AAGAACAAAAGAAGAAAGAG+GGG | 0.594004 | 1.4:+59891208 | None:intergenic |
| CAAAGAGCTCAAGTTGAATG+TGG | 0.597170 | 1.4:-59890599 | MS.gene40035:CDS |
| ATTAGGAGGTATAGCTGCTG+TGG | 0.619016 | 1.4:-59889940 | MS.gene40035:CDS |
| CCTAATGGGGTTCCAAAGGG+TGG | 0.628137 | 1.4:-59890518 | MS.gene40035:CDS |
| ACAGGTATCTTCCAATGCAG+AGG | 0.638244 | 1.4:-59890980 | MS.gene40035:CDS |
| ACTGTGGCAATAATATTAGG+AGG | 0.641949 | 1.4:-59889954 | MS.gene40035:CDS |
| AATTTGATGAAGAAACGTGA+TGG | 0.662013 | 1.4:-59889885 | MS.gene40035:intron |
| GTTCTCTCAGACAAACTATG+TGG | 0.667348 | 1.4:-59890911 | MS.gene40035:CDS |
| ACAAAATACAGGAAAGACTG+TGG | 0.709113 | 1.4:-59889970 | MS.gene40035:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTCTCAAATTATTAT+CGG | + | chr1.4:59890704-59890723 | None:intergenic | 15.0% |
| !! | GTTTCATACATATTAGTAAA+TGG | + | chr1.4:59890940-59890959 | None:intergenic | 20.0% |
| !! | TATATATAGTTTCACAAAGA+AGG | - | chr1.4:59890832-59890851 | MS.gene40035:CDS | 20.0% |
| !!! | AGTTTTAGTTATTATCCTAA+TGG | - | chr1.4:59890444-59890463 | MS.gene40035:intron | 20.0% |
| !!! | GTTTTAGTTATTATCCTAAT+GGG | - | chr1.4:59890445-59890464 | MS.gene40035:intron | 20.0% |
| !!! | TTTTAGTTATTATCCTAATG+GGG | - | chr1.4:59890446-59890465 | MS.gene40035:intron | 20.0% |
| ! | AAGATGATGATTTAGAGAAA+TGG | + | chr1.4:59889810-59889829 | None:intergenic | 25.0% |
| ! | AGATGATGATTTAGAGAAAT+GGG | + | chr1.4:59889809-59889828 | None:intergenic | 25.0% |
| ! | TCAGAATCAATAGATAAGAT+TGG | - | chr1.4:59890560-59890579 | MS.gene40035:CDS | 25.0% |
| !!! | ATAAGATTGGTTTCAATTCT+GGG | - | chr1.4:59890573-59890592 | MS.gene40035:CDS | 25.0% |
| !!! | TATCTATTGATTCTGAATGA+TGG | + | chr1.4:59890556-59890575 | None:intergenic | 25.0% |
| !!! | TTATATTCTTGCTATTTGCA+AGG | - | chr1.4:59891069-59891088 | MS.gene40035:CDS | 25.0% |
| !!! | TTGTACATGGTTTTACTATA+TGG | - | chr1.4:59891126-59891145 | MS.gene40035:CDS | 25.0% |
| AAGAACAAAAGAAGAAAGAG+GGG | + | chr1.4:59889772-59889791 | None:intergenic | 30.0% | |
| AAGACTGTGGCAATAATATT+AGG | - | chr1.4:59891020-59891039 | MS.gene40035:CDS | 30.0% | |
| AATTTGATGAAGAAACGTGA+TGG | - | chr1.4:59891092-59891111 | MS.gene40035:CDS | 30.0% | |
| GAAGAACAAAAGAAGAAAGA+GGG | + | chr1.4:59889773-59889792 | None:intergenic | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | + | chr1.4:59890698-59890717 | None:intergenic | 30.0% | |
| TGAAGAACAAAAGAAGAAAG+AGG | + | chr1.4:59889774-59889793 | None:intergenic | 30.0% | |
| TTCAAAACAACAACTGGTAA+TGG | - | chr1.4:59889961-59889980 | MS.gene40035:CDS | 30.0% | |
| TTTCACAATCCACAAAAACA+AGG | - | chr1.4:59889935-59889954 | MS.gene40035:CDS | 30.0% | |
| ! | ATTAATCATTGAGTTGTGTG+TGG | - | chr1.4:59890964-59890983 | MS.gene40035:CDS | 30.0% |
| ! | TATCAAGCTTTGTATGTGAT+GGG | - | chr1.4:59890297-59890316 | MS.gene40035:intron | 30.0% |
| ! | TTATCAAGCTTTGTATGTGA+TGG | - | chr1.4:59890296-59890315 | MS.gene40035:intron | 30.0% |
| !! | GATAAGATTGGTTTCAATTC+TGG | - | chr1.4:59890572-59890591 | MS.gene40035:CDS | 30.0% |
| !! | TTTTGTGGATTGTGAAACTA+AGG | + | chr1.4:59889932-59889951 | None:intergenic | 30.0% |
| !!! | TTTGAAGAACCTTGTTTTTG+TGG | + | chr1.4:59889947-59889966 | None:intergenic | 30.0% |
| ACAAAATACAGGAAAGACTG+TGG | - | chr1.4:59891007-59891026 | MS.gene40035:CDS | 35.0% | |
| ACCTTAACACTTCAGATTGA+AGG | + | chr1.4:59890812-59890831 | None:intergenic | 35.0% | |
| ACTGTGGCAATAATATTAGG+AGG | - | chr1.4:59891023-59891042 | MS.gene40035:CDS | 35.0% | |
| AGGTTCTTCAAAACAACAAC+TGG | - | chr1.4:59889955-59889974 | MS.gene40035:CDS | 35.0% | |
| GAAACATTCACAGATCCAAA+TGG | - | chr1.4:59889871-59889890 | MS.gene40035:intron | 35.0% | |
| GAATGTGGAAGTTCTATTTC+AGG | - | chr1.4:59890393-59890412 | MS.gene40035:intron | 35.0% | |
| GATTGTGAATATGCACCATT+TGG | + | chr1.4:59889889-59889908 | None:intergenic | 35.0% | |
| TACACAACTTTGGTCTACAA+AGG | - | chr1.4:59889838-59889857 | MS.gene40035:intron | 35.0% | |
| TAGACCAAAGTTGTGTAATC+AGG | + | chr1.4:59889835-59889854 | None:intergenic | 35.0% | |
| TTCTCCTGATTACACAACTT+TGG | - | chr1.4:59889828-59889847 | MS.gene40035:intron | 35.0% | |
| ! | ACCTTCAATCTGAAGTGTTA+AGG | - | chr1.4:59890808-59890827 | MS.gene40035:CDS | 35.0% |
| ! | CAATCTCTTTCAGCACTTTT+TGG | - | chr1.4:59889904-59889923 | MS.gene40035:CDS | 35.0% |
| ! | TCTGGTTACTCTTCATCTTT+TGG | - | chr1.4:59890513-59890532 | MS.gene40035:CDS | 35.0% |
| !! | AATGGTGTTGTGAGTAATCA+TGG | - | chr1.4:59890258-59890277 | MS.gene40035:intron | 35.0% |
| !! | GCTTTTTCTGTGATGCAAAA+TGG | - | chr1.4:59890240-59890259 | MS.gene40035:intron | 35.0% |
| !!! | AGAAGAAAGAGGGGTTTTTT+TGG | + | chr1.4:59889763-59889782 | None:intergenic | 35.0% |
| AGGTTGTTACATGCTGTATG+AGG | - | chr1.4:59890119-59890138 | MS.gene40035:intron | 40.0% | |
| CAGATTCTCTTCAAGACTTG+TGG | - | chr1.4:59890171-59890190 | MS.gene40035:intron | 40.0% | |
| GAAGGAGCTCAATTTAGCAA+TGG | - | chr1.4:59890850-59890869 | MS.gene40035:CDS | 40.0% | |
| GCTATGACAGGACAAAATAC+AGG | - | chr1.4:59890996-59891015 | MS.gene40035:CDS | 40.0% | |
| GTTCTCTCAGACAAACTATG+TGG | - | chr1.4:59890066-59890085 | MS.gene40035:intron | 40.0% | |
| TATCCTAATGGGGTTCCAAA+GGG | - | chr1.4:59890456-59890475 | MS.gene40035:intron | 40.0% | |
| TGATGAAGAAACGTGATGGT+AGG | - | chr1.4:59891096-59891115 | MS.gene40035:CDS | 40.0% | |
| TGGCTAAATGATGCTATGAC+AGG | - | chr1.4:59890984-59891003 | MS.gene40035:CDS | 40.0% | |
| TGTATGTGTCTGACATGTGT+TGG | + | chr1.4:59890780-59890799 | None:intergenic | 40.0% | |
| TTATCCTAATGGGGTTCCAA+AGG | - | chr1.4:59890455-59890474 | MS.gene40035:intron | 40.0% | |
| TTGTTGTGTTGTGTAGGTGT+CGG | - | chr1.4:59890751-59890770 | MS.gene40035:CDS | 40.0% | |
| ! | CATAGTTTGTCTGAGAGAAC+TGG | + | chr1.4:59890066-59890085 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAGGTGTGTT+TGG | + | chr1.4:59890803-59890822 | None:intergenic | 40.0% |
| ! | GGTTACTCTTCATCTTTTGG+TGG | - | chr1.4:59890516-59890535 | MS.gene40035:CDS | 40.0% |
| !! | AGATACCTGTGATGCTGTTT+TGG | + | chr1.4:59889987-59890006 | None:intergenic | 40.0% |
| !! | CAAAGAGCTCAAGTTGAATG+TGG | - | chr1.4:59890378-59890397 | MS.gene40035:intron | 40.0% |
| !! | CTGGTTTTCCTCAAGTTTCA+GGG | - | chr1.4:59890145-59890164 | MS.gene40035:intron | 40.0% |
| !! | GATGTTGGTGATTCTGATTG+TGG | - | chr1.4:59890333-59890352 | MS.gene40035:intron | 40.0% |
| !! | GTCAACTTGTTGTGTTGTGT+AGG | - | chr1.4:59890745-59890764 | MS.gene40035:CDS | 40.0% |
| AAGCTGAACTCTTGCAGAGA+TGG | + | chr1.4:59890097-59890116 | None:intergenic | 45.0% | |
| AAGGGTGGTCATTCTTCATC+TGG | - | chr1.4:59890474-59890493 | MS.gene40035:CDS | 45.0% | |
| AATGGCCAAAACAGCATCAC+AGG | - | chr1.4:59889979-59889998 | MS.gene40035:intron | 45.0% | |
| ACAACAAATGCTGCTGGAAG+AGG | - | chr1.4:59890195-59890214 | MS.gene40035:intron | 45.0% | |
| ACAGGTATCTTCCAATGCAG+AGG | - | chr1.4:59889997-59890016 | MS.gene40035:intron | 45.0% | |
| ATCTGCATCCCTGAAACTTG+AGG | + | chr1.4:59890156-59890175 | None:intergenic | 45.0% | |
| CAACAAATGCTGCTGGAAGA+GGG | - | chr1.4:59890196-59890215 | MS.gene40035:intron | 45.0% | |
| GATGAAGAATGACCACCCTT+TGG | + | chr1.4:59890474-59890493 | None:intergenic | 45.0% | |
| TACATGCTGTATGAGGTTGC+TGG | - | chr1.4:59890126-59890145 | MS.gene40035:intron | 45.0% | |
| TCTGCAAGAGTTCAGCTTTC+AGG | - | chr1.4:59890099-59890118 | MS.gene40035:intron | 45.0% | |
| TGTGGAACAACAAATGCTGC+TGG | - | chr1.4:59890189-59890208 | MS.gene40035:intron | 45.0% | |
| TTGTGAGATCTCCTCTGCAT+TGG | + | chr1.4:59890011-59890030 | None:intergenic | 45.0% | |
| ! | ATTAGGAGGTATAGCTGCTG+TGG | - | chr1.4:59891037-59891056 | MS.gene40035:CDS | 45.0% |
| ! | GGTAGGTGTTGTGTTGTACA+TGG | - | chr1.4:59891113-59891132 | MS.gene40035:CDS | 45.0% |
| ! | TATAGCTGCTGTGGCGTTTT+TGG | - | chr1.4:59891046-59891065 | MS.gene40035:CDS | 45.0% |
| !! | TATGTGATGGGTCAGTGTGA+GGG | - | chr1.4:59890309-59890328 | MS.gene40035:intron | 45.0% |
| !!! | GCTGGTTTTCCTCAAGTTTC+AGG | - | chr1.4:59890144-59890163 | MS.gene40035:intron | 45.0% |
| GGTCATTCTTCATCTGGTGG+TGG | - | chr1.4:59890480-59890499 | MS.gene40035:CDS | 50.0% | |
| GGTGGTCATTCTTCATCTGG+TGG | - | chr1.4:59890477-59890496 | MS.gene40035:CDS | 50.0% | |
| !! | GGTGGTGGATCATCTTCTTC+TGG | - | chr1.4:59890495-59890514 | MS.gene40035:CDS | 50.0% |
| !! | GTATGTGATGGGTCAGTGTG+AGG | - | chr1.4:59890308-59890327 | MS.gene40035:intron | 50.0% |
| CCTAATGGGGTTCCAAAGGG+TGG | - | chr1.4:59890459-59890478 | MS.gene40035:intron | 55.0% | |
| GGTCAGTGTGAGGGTGATGT+TGG | - | chr1.4:59890318-59890337 | MS.gene40035:intron | 55.0% | |
| !! | CCACCCTTTGGAACCCCATT+AGG | + | chr1.4:59890462-59890481 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59889751 | 59891248 | 59889751 | ID=MS.gene40035 |
| chr1.4 | mRNA | 59889751 | 59891248 | 59889751 | ID=MS.gene40035.t1;Parent=MS.gene40035 |
| chr1.4 | exon | 59890462 | 59891248 | 59890462 | ID=MS.gene40035.t1.exon1;Parent=MS.gene40035.t1 |
| chr1.4 | CDS | 59890462 | 59891248 | 59890462 | ID=cds.MS.gene40035.t1;Parent=MS.gene40035.t1 |
| chr1.4 | exon | 59889886 | 59889993 | 59889886 | ID=MS.gene40035.t1.exon2;Parent=MS.gene40035.t1 |
| chr1.4 | CDS | 59889886 | 59889993 | 59889886 | ID=cds.MS.gene40035.t1;Parent=MS.gene40035.t1 |
| chr1.4 | exon | 59889751 | 59889758 | 59889751 | ID=MS.gene40035.t1.exon3;Parent=MS.gene40035.t1 |
| chr1.4 | CDS | 59889751 | 59889758 | 59889751 | ID=cds.MS.gene40035.t1;Parent=MS.gene40035.t1 |
| Gene Sequence |
| Protein sequence |
