Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40286.t1 | KEH36071.1 | 95.2 | 165 | 8 | 0 | 1 | 165 | 1 | 165 | 4.50E-81 | 310.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40286.t1 | Q9Y3E5 | 39.8 | 133 | 79 | 1 | 33 | 164 | 18 | 150 | 7.6e-21 | 102.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40286.t1 | A0A072V318 | 95.2 | 165 | 8 | 0 | 1 | 165 | 1 | 165 | 3.2e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene40286 | 0.80684 | 6.77E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene40286 | -0.810607 | 1.06E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene40286 | 0.829872 | 4.04E-55 | -1.69E-46 |
| MS.gene050560 | MS.gene40286 | 0.806135 | 9.53E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene40286 | 0.809953 | 1.47E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene40286 | 0.810451 | 1.14E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene40286 | 0.809971 | 1.45E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene40286 | 0.820812 | 5.63E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene40286 | 0.819563 | 1.09E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene40286 | 0.817529 | 3.15E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene40286 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene40286 | 0.846559 | 2.01E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene40286 | 0.801414 | 9.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40286.t1 | MTR_3g109700 | 95.152 | 165 | 8 | 0 | 1 | 165 | 1 | 165 | 1.42e-109 | 311 |
| MS.gene40286.t1 | MTR_3g109700 | 94.578 | 166 | 9 | 0 | 1 | 166 | 1 | 166 | 4.79e-109 | 310 |
| MS.gene40286.t1 | MTR_3g109700 | 92.353 | 170 | 13 | 0 | 1 | 170 | 1 | 170 | 1.33e-108 | 308 |
| MS.gene40286.t1 | MTR_4g075280 | 46.591 | 88 | 47 | 0 | 77 | 164 | 75 | 162 | 1.59e-23 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40286.t1 | AT4G32900 | 63.415 | 164 | 60 | 0 | 1 | 164 | 1 | 164 | 1.40e-73 | 221 |
| MS.gene40286.t1 | AT4G32900 | 63.415 | 164 | 60 | 0 | 1 | 164 | 1 | 164 | 1.43e-73 | 219 |
| MS.gene40286.t1 | AT4G32900 | 63.415 | 164 | 60 | 0 | 1 | 164 | 1 | 164 | 1.43e-73 | 219 |
| MS.gene40286.t1 | AT4G32900 | 61.429 | 140 | 54 | 0 | 1 | 140 | 1 | 140 | 5.66e-58 | 179 |
| MS.gene40286.t1 | AT5G16870 | 41.096 | 146 | 76 | 4 | 20 | 164 | 5 | 141 | 2.81e-27 | 102 |
| MS.gene40286.t1 | AT3G03010 | 50.000 | 88 | 44 | 0 | 77 | 164 | 64 | 151 | 9.95e-25 | 95.9 |
| MS.gene40286.t1 | AT3G03010 | 50.000 | 88 | 44 | 0 | 77 | 164 | 64 | 151 | 9.95e-25 | 95.9 |
| MS.gene40286.t1 | AT3G03010 | 50.000 | 88 | 44 | 0 | 77 | 164 | 64 | 151 | 9.95e-25 | 95.9 |
| MS.gene40286.t1 | AT3G03010 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 3.64e-17 | 75.1 |
| MS.gene40286.t1 | AT3G03010 | 51.562 | 64 | 31 | 0 | 77 | 140 | 64 | 127 | 3.64e-17 | 75.1 |
Find 46 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAAGTCACAACAATTT+TGG | 0.072538 | 3.3:-90901796 | None:intergenic |
| TTCAGGGCCAAAAGCAATTC+TGG | 0.238209 | 3.3:+90902632 | MS.gene40286:intron |
| TGCTGATCAAGAACTTAAAA+TGG | 0.247917 | 3.3:+90900505 | MS.gene40286:CDS |
| TCTTTCCAGATTTCATCTTT+AGG | 0.306077 | 3.3:-90901103 | None:intergenic |
| TGTATCAGGTTCTGGTTGTT+AGG | 0.313277 | 3.3:+90901075 | MS.gene40286:intron |
| ACCGAATCCAGAATTGCTTT+TGG | 0.356047 | 3.3:-90902639 | None:intergenic |
| AGGAAGCAGCTGAGGGTATT+GGG | 0.357565 | 3.3:+90901926 | MS.gene40286:CDS |
| CTTGTCATTGGTTTCATTTG+TGG | 0.367500 | 3.3:+90900383 | MS.gene40286:CDS |
| CAAAAGGGAGAATGGTTATC+AGG | 0.368060 | 3.3:+90900329 | MS.gene40286:CDS |
| TTCATTCCAGGTCTTGTCAT+TGG | 0.373028 | 3.3:+90900371 | MS.gene40286:CDS |
| AAGGAAGCAGCTGAGGGTAT+TGG | 0.388038 | 3.3:+90901925 | MS.gene40286:CDS |
| TAGGAAAGCTTACATCAAAT+AGG | 0.391998 | 3.3:+90902184 | MS.gene40286:intron |
| CAAGACCTAAAGATGAAATC+TGG | 0.399487 | 3.3:+90901098 | MS.gene40286:CDS |
| GCAATTCTGGATTCGGTGAC+TGG | 0.400755 | 3.3:+90902645 | MS.gene40286:CDS |
| AAGGCAGAGAATTTCATTCC+AGG | 0.417009 | 3.3:+90900359 | MS.gene40286:CDS |
| GCTAACCCCACTTGATTGCT+TGG | 0.432072 | 3.3:-90902207 | None:intergenic |
| GAAACAACAAGAAAAGCAAA+AGG | 0.436943 | 3.3:+90900313 | MS.gene40286:intron |
| GCCAAAAGCAATTCTGGATT+CGG | 0.450419 | 3.3:+90902638 | MS.gene40286:CDS |
| TTGGATAAGTGATTTCTAGT+TGG | 0.453255 | 3.3:-90900428 | None:intergenic |
| CCCAATGTCTTAAAAGAGAC+CGG | 0.478499 | 3.3:-90901758 | None:intergenic |
| CAACCTAAAATCCACCGAAC+AGG | 0.481970 | 3.3:+90900144 | MS.gene40286:CDS |
| GTTATTGAAGAATACCTGTT+CGG | 0.492171 | 3.3:-90900158 | None:intergenic |
| CATCTGCTTACATTTCCTGT+TGG | 0.505133 | 3.3:-90901821 | None:intergenic |
| ATGGTTATCAGGAAGTTTCA+AGG | 0.505636 | 3.3:+90900340 | MS.gene40286:CDS |
| GGATTCGGTGACTGGAAGGT+TGG | 0.507459 | 3.3:+90902653 | MS.gene40286:CDS |
| TGTGACTTGCAAGAACCAAC+AGG | 0.509191 | 3.3:+90901806 | MS.gene40286:CDS |
| AAGAAAAGCAAAAGGGAGAA+TGG | 0.509470 | 3.3:+90900321 | MS.gene40286:CDS |
| CTGGCTGATTTATCACGCTA+TGG | 0.514136 | 3.3:-90902708 | None:intergenic |
| GCATCGGAGACAACAAAAGT+AGG | 0.520501 | 3.3:-90901952 | None:intergenic |
| AAACAACAAGAAAAGCAAAA+GGG | 0.522970 | 3.3:+90900314 | MS.gene40286:CDS |
| TACCTGTGTTCGTCCTGCAT+CGG | 0.526970 | 3.3:-90901968 | None:intergenic |
| TTCTGGATTCGGTGACTGGA+AGG | 0.541644 | 3.3:+90902649 | MS.gene40286:CDS |
| TGTATGGCAGATGCTGCCAC+CGG | 0.557778 | 3.3:+90901275 | MS.gene40286:intron |
| ATGAAACCAATGACAAGACC+TGG | 0.577308 | 3.3:-90900377 | None:intergenic |
| CAACTCTCTGTCTCAACTAA+CGG | 0.582789 | 3.3:+90900482 | MS.gene40286:CDS |
| TAAGCTCAAGGAAGCAGCTG+AGG | 0.585263 | 3.3:+90901918 | MS.gene40286:CDS |
| ATTGAAGAATACCTGTTCGG+TGG | 0.590827 | 3.3:-90900155 | None:intergenic |
| TTTGATCAGGAATAAGCTCA+AGG | 0.591705 | 3.3:+90901906 | MS.gene40286:intron |
| CATCGGAGACAACAAAAGTA+GGG | 0.602209 | 3.3:-90901951 | None:intergenic |
| CTCCGATGCAGGACGAACAC+AGG | 0.606811 | 3.3:+90901966 | MS.gene40286:CDS |
| CGTTAGTTGAGACAGAGAGT+TGG | 0.626392 | 3.3:-90900481 | None:intergenic |
| CGTTAATTCAGCATACATGC+CGG | 0.627029 | 3.3:-90901294 | None:intergenic |
| AAGCTCAAGGAAGCAGCTGA+GGG | 0.642971 | 3.3:+90901919 | MS.gene40286:CDS |
| TAATTCAGCATACATGCCGG+TGG | 0.683317 | 3.3:-90901291 | None:intergenic |
| TGTATGCTGAATTAACGCGA+AGG | 0.695292 | 3.3:+90901300 | MS.gene40286:CDS |
| TTAAGACATTGGGAACAGTG+CGG | 0.729788 | 3.3:+90901768 | MS.gene40286:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATTCATTAAAATAAT+TGG | - | chr3.3:90900275-90900294 | None:intergenic | 10.0% |
| !! | TACTATTCATTAAAATAATT+GGG | - | chr3.3:90900274-90900293 | None:intergenic | 10.0% |
| !! | TTCAACTTATTTAAAAAAAA+TGG | - | chr3.3:90900886-90900905 | None:intergenic | 10.0% |
| !!! | TGTATTTTATAAAATTGTTA+CGG | - | chr3.3:90900656-90900675 | None:intergenic | 10.0% |
| !! | ATAATTCAATTCAATGTTTA+GGG | + | chr3.3:90900241-90900260 | MS.gene40286:intron | 15.0% |
| !!! | GTATTTTATAAAATTGTTAC+GGG | - | chr3.3:90900655-90900674 | None:intergenic | 15.0% |
| !! | AAAAACATATATCCATGTAA+AGG | - | chr3.3:90901255-90901274 | None:intergenic | 20.0% |
| !! | AAATGTAAAATGTTTGTATC+AGG | + | chr3.3:90901061-90901080 | MS.gene40286:intron | 20.0% |
| !! | AACAACAAATGTTTATTCAA+AGG | - | chr3.3:90900787-90900806 | None:intergenic | 20.0% |
| !! | AATAATATCGAATTTCATTC+AGG | + | chr3.3:90901667-90901686 | MS.gene40286:intron | 20.0% |
| !! | ATTCATTAAAATAATTGGGT+TGG | - | chr3.3:90900270-90900289 | None:intergenic | 20.0% |
| !! | CATAATTCAATTCAATGTTT+AGG | + | chr3.3:90900240-90900259 | MS.gene40286:intron | 20.0% |
| !!! | ATGGATATATGTTTTTTGTA+TGG | + | chr3.3:90901259-90901278 | MS.gene40286:intron | 20.0% |
| !!! | CAAATTTTGTACAGAAAAAA+GGG | - | chr3.3:90901488-90901507 | None:intergenic | 20.0% |
| !!! | CAGTATTGTAAATATACTTT+TGG | + | chr3.3:90901856-90901875 | MS.gene40286:intron | 20.0% |
| !!! | CTATAACACAATCTTTTTAA+CGG | - | chr3.3:90901390-90901409 | None:intergenic | 20.0% |
| !!! | TCTATTTTACAAATGTTATG+AGG | + | chr3.3:90900964-90900983 | MS.gene40286:intron | 20.0% |
| ! | AAACAACAAGAAAAGCAAAA+GGG | + | chr3.3:90900314-90900333 | MS.gene40286:CDS | 25.0% |
| ! | ATAGTTTACAACAGAATAAC+AGG | - | chr3.3:90900603-90900622 | None:intergenic | 25.0% |
| ! | GAAAAAAGGGATTATATGAA+TGG | - | chr3.3:90901475-90901494 | None:intergenic | 25.0% |
| ! | GGTAATAATGCTTTGATATA+TGG | + | chr3.3:90901987-90902006 | MS.gene40286:intron | 25.0% |
| ! | TAATAATACCCATTTGGATT+TGG | - | chr3.3:90900193-90900212 | None:intergenic | 25.0% |
| ! | TCAAAATACTTATGTATGAC+AGG | + | chr3.3:90902582-90902601 | MS.gene40286:intron | 25.0% |
| ! | TCTTTGCATTTAATTAAAGC+CGG | - | chr3.3:90900563-90900582 | None:intergenic | 25.0% |
| ! | TGAATATCCTGTTAAAAATC+TGG | - | chr3.3:90902374-90902393 | None:intergenic | 25.0% |
| ! | TGTCTATTACAAACTCTATT+AGG | + | chr3.3:90901198-90901217 | MS.gene40286:intron | 25.0% |
| ! | TTTCATGTATTGAGTTCATA+TGG | + | chr3.3:90900741-90900760 | MS.gene40286:intron | 25.0% |
| !! | ATTTTACAAATGTTATGAGG+AGG | + | chr3.3:90900967-90900986 | MS.gene40286:intron | 25.0% |
| !! | ATTTTCAGAATTAAGCAGAA+AGG | - | chr3.3:90900220-90900239 | None:intergenic | 25.0% |
| !! | CTATGTGATAAGAGTTTTTA+AGG | - | chr3.3:90902035-90902054 | None:intergenic | 25.0% |
| !! | GCAAATTTTGTACAGAAAAA+AGG | - | chr3.3:90901489-90901508 | None:intergenic | 25.0% |
| !! | TTTTACAAATGTTATGAGGA+GGG | + | chr3.3:90900968-90900987 | MS.gene40286:intron | 25.0% |
| !!! | GAAATTAGTTGGTTAGTTTT+GGG | + | chr3.3:90902294-90902313 | MS.gene40286:intron | 25.0% |
| !!! | TACAAAATTTGCTATAGTGA+AGG | + | chr3.3:90901497-90901516 | MS.gene40286:intron | 25.0% |
| !!! | TTTTTGGTTGTTATCCTTAT+TGG | + | chr3.3:90901698-90901717 | MS.gene40286:intron | 25.0% |
| AAAATGTTTGTATCAGGTTC+TGG | + | chr3.3:90901067-90901086 | MS.gene40286:intron | 30.0% | |
| AAACATGTTCCAAATCCAAA+TGG | + | chr3.3:90900181-90900200 | MS.gene40286:intron | 30.0% | |
| AACATGTTCCAAATCCAAAT+GGG | + | chr3.3:90900182-90900201 | MS.gene40286:intron | 30.0% | |
| AGGCTAGTATACTAAAAAGA+TGG | - | chr3.3:90901229-90901248 | None:intergenic | 30.0% | |
| ATCCAATAAAAGAAGTTCGT+AGG | - | chr3.3:90901021-90901040 | None:intergenic | 30.0% | |
| ATTTGCAGCAAATTAACCAA+CGG | - | chr3.3:90902253-90902272 | None:intergenic | 30.0% | |
| CTGTTAAAAATCTGGATCAA+TGG | - | chr3.3:90902366-90902385 | None:intergenic | 30.0% | |
| GAAACAACAAGAAAAGCAAA+AGG | + | chr3.3:90900313-90900332 | MS.gene40286:intron | 30.0% | |
| GGCTAATAATAATACCCATT+TGG | - | chr3.3:90900199-90900218 | None:intergenic | 30.0% | |
| GTTATTGAAGAATACCTGTT+CGG | - | chr3.3:90900161-90900180 | None:intergenic | 30.0% | |
| TAAATGAGCCAATAACAGAT+TGG | - | chr3.3:90900696-90900715 | None:intergenic | 30.0% | |
| TAATGCTTTGATATATGGCT+AGG | + | chr3.3:90901992-90902011 | MS.gene40286:intron | 30.0% | |
| TAGGAAAGCTTACATCAAAT+AGG | + | chr3.3:90902184-90902203 | MS.gene40286:intron | 30.0% | |
| TCCAATAAAAGAAGTTCGTA+GGG | - | chr3.3:90901020-90901039 | None:intergenic | 30.0% | |
| TCTTTCCAGATTTCATCTTT+AGG | - | chr3.3:90901106-90901125 | None:intergenic | 30.0% | |
| TGCTGATCAAGAACTTAAAA+TGG | + | chr3.3:90900505-90900524 | MS.gene40286:CDS | 30.0% | |
| TTCATCACTTTCTCATACTA+TGG | + | chr3.3:90900537-90900556 | MS.gene40286:intron | 30.0% | |
| TTTACAAATGTTATGAGGAG+GGG | + | chr3.3:90900969-90900988 | MS.gene40286:intron | 30.0% | |
| ! | CATTGATCCAGATTTTTAAC+AGG | + | chr3.3:90902364-90902383 | MS.gene40286:intron | 30.0% |
| ! | TTCCTTTACATCTAAAGCAA+AGG | + | chr3.3:90901527-90901546 | MS.gene40286:intron | 30.0% |
| ! | TTGCAAGTCACAACAATTTT+GGG | - | chr3.3:90901798-90901817 | None:intergenic | 30.0% |
| ! | TTTTATCATGAAACCGATGT+TGG | - | chr3.3:90901344-90901363 | None:intergenic | 30.0% |
| !! | GTTAATTTGCTGCAAATAGA+GGG | + | chr3.3:90902256-90902275 | MS.gene40286:intron | 30.0% |
| !! | TTAATTTGCTGCAAATAGAG+GGG | + | chr3.3:90902257-90902276 | MS.gene40286:intron | 30.0% |
| !! | TTGGATAAGTGATTTCTAGT+TGG | - | chr3.3:90900431-90900450 | None:intergenic | 30.0% |
| !!! | CATTCAGGCAACATATTTTT+TGG | + | chr3.3:90901682-90901701 | MS.gene40286:intron | 30.0% |
| !!! | GACTATTTTTGTCTTCTGTT+AGG | + | chr3.3:90902148-90902167 | MS.gene40286:intron | 30.0% |
| !!! | GGAAATTAGTTGGTTAGTTT+TGG | + | chr3.3:90902293-90902312 | MS.gene40286:intron | 30.0% |
| !!! | TCAGTAGTTTTAGCTCTAAT+AGG | - | chr3.3:90900813-90900832 | None:intergenic | 30.0% |
| AAGAAAAGCAAAAGGGAGAA+TGG | + | chr3.3:90900321-90900340 | MS.gene40286:CDS | 35.0% | |
| AATCTGGATCAATGGAACAT+TGG | - | chr3.3:90902358-90902377 | None:intergenic | 35.0% | |
| AGTTTCTGCCAATCTGTTAT+TGG | + | chr3.3:90900685-90900704 | MS.gene40286:intron | 35.0% | |
| ATGGTTATCAGGAAGTTTCA+AGG | + | chr3.3:90900340-90900359 | MS.gene40286:CDS | 35.0% | |
| CAAGACCTAAAGATGAAATC+TGG | + | chr3.3:90901098-90901117 | MS.gene40286:CDS | 35.0% | |
| CGAAAGAAAGGGAAATTAGT+TGG | + | chr3.3:90902283-90902302 | MS.gene40286:intron | 35.0% | |
| CTTATTCCTGATCAAAATCC+AGG | - | chr3.3:90901902-90901921 | None:intergenic | 35.0% | |
| GATGTAAGCTTTCCTAGTTA+AGG | - | chr3.3:90902180-90902199 | None:intergenic | 35.0% | |
| GGAGCTTATTATAGCCAATA+AGG | - | chr3.3:90901715-90901734 | None:intergenic | 35.0% | |
| TCTTAGGAATGCATGTTGAA+GGG | + | chr3.3:90902096-90902115 | MS.gene40286:intron | 35.0% | |
| TTACAAATGTTATGAGGAGG+GGG | + | chr3.3:90900970-90900989 | MS.gene40286:intron | 35.0% | |
| TTCTTAGGAATGCATGTTGA+AGG | + | chr3.3:90902095-90902114 | MS.gene40286:intron | 35.0% | |
| TTTGATCAGGAATAAGCTCA+AGG | + | chr3.3:90901906-90901925 | MS.gene40286:intron | 35.0% | |
| ! | AATAGTCTCTAAAGAGTGTG+AGG | - | chr3.3:90902135-90902154 | None:intergenic | 35.0% |
| ! | ATATATCCATGTAAAGGCAC+AGG | - | chr3.3:90901249-90901268 | None:intergenic | 35.0% |
| ! | CTGAATACTTTTGCAGTAAC+CGG | + | chr3.3:90901739-90901758 | MS.gene40286:intron | 35.0% |
| ! | CTTGCAAGTCACAACAATTT+TGG | - | chr3.3:90901799-90901818 | None:intergenic | 35.0% |
| ! | GGTGGATGAGAATATTTTGT+TGG | - | chr3.3:90900450-90900469 | None:intergenic | 35.0% |
| ! | TCCCTACGAACTTCTTTTAT+TGG | + | chr3.3:90901016-90901035 | MS.gene40286:intron | 35.0% |
| ! | TGCCTTTGCTTTAGATGTAA+AGG | - | chr3.3:90901532-90901551 | None:intergenic | 35.0% |
| ! | TTGTAAGCACTGTGTGATAA+CGG | + | chr3.3:90901430-90901449 | MS.gene40286:intron | 35.0% |
| !! | ACTGCAAAAGTATTCAGCAA+TGG | - | chr3.3:90901736-90901755 | None:intergenic | 35.0% |
| !! | CTGTTATTGGCTCATTTAGA+AGG | + | chr3.3:90900698-90900717 | MS.gene40286:intron | 35.0% |
| !! | CTTGTCATTGGTTTCATTTG+TGG | + | chr3.3:90900383-90900402 | MS.gene40286:CDS | 35.0% |
| !! | GGTTAATTTGCTGCAAATAG+AGG | + | chr3.3:90902255-90902274 | MS.gene40286:intron | 35.0% |
| !! | GTTCTTGACTTGCTTTATGT+TGG | + | chr3.3:90902519-90902538 | MS.gene40286:intron | 35.0% |
| !!! | ATTAGTTGGTTAGTTTTGGG+TGG | + | chr3.3:90902297-90902316 | MS.gene40286:intron | 35.0% |
| !!! | TTAGTTGGTTAGTTTTGGGT+GGG | + | chr3.3:90902298-90902317 | MS.gene40286:intron | 35.0% |
| AAAGCAACACAAAGCTAACC+AGG | - | chr3.3:90902499-90902518 | None:intergenic | 40.0% | |
| AAATAGGCCAAGCAATCAAG+TGG | + | chr3.3:90902200-90902219 | MS.gene40286:intron | 40.0% | |
| AACCTGAAGATGACAGATAC+TGG | - | chr3.3:90902443-90902462 | None:intergenic | 40.0% | |
| AAGGCAGAGAATTTCATTCC+AGG | + | chr3.3:90900359-90900378 | MS.gene40286:CDS | 40.0% | |
| AATAGGCCAAGCAATCAAGT+GGG | + | chr3.3:90902201-90902220 | MS.gene40286:intron | 40.0% | |
| ACCTGAAGATGACAGATACT+GGG | - | chr3.3:90902442-90902461 | None:intergenic | 40.0% | |
| ACTGCTAATCGCAACTTCTT+AGG | + | chr3.3:90902080-90902099 | MS.gene40286:intron | 40.0% | |
| ATCATGAAACCGATGTTGGT+AGG | - | chr3.3:90901340-90901359 | None:intergenic | 40.0% | |
| ATGAAACCAATGACAAGACC+TGG | - | chr3.3:90900380-90900399 | None:intergenic | 40.0% | |
| ATTGAAGAATACCTGTTCGG+TGG | - | chr3.3:90900158-90900177 | None:intergenic | 40.0% | |
| CAAAAGGGAGAATGGTTATC+AGG | + | chr3.3:90900329-90900348 | MS.gene40286:CDS | 40.0% | |
| CAACTCTCTGTCTCAACTAA+CGG | + | chr3.3:90900482-90900501 | MS.gene40286:CDS | 40.0% | |
| CATCGGAGACAACAAAAGTA+GGG | - | chr3.3:90901954-90901973 | None:intergenic | 40.0% | |
| CATCTGCTTACATTTCCTGT+TGG | - | chr3.3:90901824-90901843 | None:intergenic | 40.0% | |
| CCCAATGTCTTAAAAGAGAC+CGG | - | chr3.3:90901761-90901780 | None:intergenic | 40.0% | |
| CGTTAATTCAGCATACATGC+CGG | - | chr3.3:90901297-90901316 | None:intergenic | 40.0% | |
| GAGTGTGAGGAGATGAAATT+CGG | - | chr3.3:90902122-90902141 | None:intergenic | 40.0% | |
| GATGTTCATGCACATGCTAT+TGG | - | chr3.3:90902564-90902583 | None:intergenic | 40.0% | |
| GCCAAAAGCAATTCTGGATT+CGG | + | chr3.3:90902638-90902657 | MS.gene40286:CDS | 40.0% | |
| GGATTTGAATGTTGCTCTCT+TGG | + | chr3.3:90902603-90902622 | MS.gene40286:intron | 40.0% | |
| GTTAGGAACATGCCTTAACT+AGG | + | chr3.3:90902165-90902184 | MS.gene40286:intron | 40.0% | |
| TACAAATGTTATGAGGAGGG+GGG | + | chr3.3:90900971-90900990 | MS.gene40286:intron | 40.0% | |
| TCACTTTCTCATACTATGGC+CGG | + | chr3.3:90900541-90900560 | MS.gene40286:intron | 40.0% | |
| TGTATGCTGAATTAACGCGA+AGG | + | chr3.3:90901300-90901319 | MS.gene40286:CDS | 40.0% | |
| TTAAGACATTGGGAACAGTG+CGG | + | chr3.3:90901768-90901787 | MS.gene40286:CDS | 40.0% | |
| ! | AAGTCACAACAATTTTGGGC+TGG | - | chr3.3:90901794-90901813 | None:intergenic | 40.0% |
| ! | ACCGAATCCAGAATTGCTTT+TGG | - | chr3.3:90902642-90902661 | None:intergenic | 40.0% |
| ! | GCTCTCTTGGATTTGTTTCA+GGG | + | chr3.3:90902616-90902635 | MS.gene40286:intron | 40.0% |
| ! | TCAAAGACTGTTCTTGCTGT+TGG | + | chr3.3:90902472-90902491 | MS.gene40286:intron | 40.0% |
| ! | TGCTCTCTTGGATTTGTTTC+AGG | + | chr3.3:90902615-90902634 | MS.gene40286:intron | 40.0% |
| ! | TGTATCAGGTTCTGGTTGTT+AGG | + | chr3.3:90901075-90901094 | MS.gene40286:intron | 40.0% |
| ! | TTCATTCCAGGTCTTGTCAT+TGG | + | chr3.3:90900371-90900390 | MS.gene40286:CDS | 40.0% |
| !! | ATACCTGTTCGGTGGATTTT+AGG | - | chr3.3:90900150-90900169 | None:intergenic | 40.0% |
| !!! | ACCGGTCTCTTTTAAGACAT+TGG | + | chr3.3:90901757-90901776 | MS.gene40286:CDS | 40.0% |
| !!! | AGAGAGTTGGTTTTGAAGCT+TGG | - | chr3.3:90900471-90900490 | None:intergenic | 40.0% |
| !!! | CCGGTCTCTTTTAAGACATT+GGG | + | chr3.3:90901758-90901777 | MS.gene40286:CDS | 40.0% |
| AAGCCAACACAACACCTACA+CGG | + | chr3.3:90900624-90900643 | MS.gene40286:intron | 45.0% | |
| ACAAATGTTATGAGGAGGGG+GGG | + | chr3.3:90900972-90900991 | MS.gene40286:intron | 45.0% | |
| ACCAATCCACCTACCAACAT+CGG | + | chr3.3:90901328-90901347 | MS.gene40286:intron | 45.0% | |
| ACCCAGTATCTGTCATCTTC+AGG | + | chr3.3:90902438-90902457 | MS.gene40286:intron | 45.0% | |
| AGACCAAGCTGTTGAACTCA+TGG | + | chr3.3:90902323-90902342 | MS.gene40286:intron | 45.0% | |
| ATAGGCCAAGCAATCAAGTG+GGG | + | chr3.3:90902202-90902221 | MS.gene40286:intron | 45.0% | |
| CAACCTAAAATCCACCGAAC+AGG | + | chr3.3:90900144-90900163 | MS.gene40286:CDS | 45.0% | |
| CGTTAGTTGAGACAGAGAGT+TGG | - | chr3.3:90900484-90900503 | None:intergenic | 45.0% | |
| GACCAAGCTGTTGAACTCAT+GGG | + | chr3.3:90902324-90902343 | MS.gene40286:intron | 45.0% | |
| GCATCGGAGACAACAAAAGT+AGG | - | chr3.3:90901955-90901974 | None:intergenic | 45.0% | |
| TAATTCAGCATACATGCCGG+TGG | - | chr3.3:90901294-90901313 | None:intergenic | 45.0% | |
| TCCTGATCAAAATCCAGGTC+AGG | - | chr3.3:90901897-90901916 | None:intergenic | 45.0% | |
| TTCAGGGCCAAAAGCAATTC+TGG | + | chr3.3:90902632-90902651 | MS.gene40286:intron | 45.0% | |
| ! | ATGAAACCGATGTTGGTAGG+TGG | - | chr3.3:90901337-90901356 | None:intergenic | 45.0% |
| ! | TACTAGCCTGTGCCTTTACA+TGG | + | chr3.3:90901240-90901259 | MS.gene40286:intron | 45.0% |
| ! | TGCTGTTATTTACGCACCGT+TGG | + | chr3.3:90902234-90902253 | MS.gene40286:intron | 45.0% |
| ! | TGTCATCTTCAGGTTTCAGC+AGG | + | chr3.3:90902448-90902467 | MS.gene40286:intron | 45.0% |
| ! | TGTGACTTGCAAGAACCAAC+AGG | + | chr3.3:90901806-90901825 | MS.gene40286:CDS | 45.0% |
| !! | ACTTTTGTTGTCTCCGATGC+AGG | + | chr3.3:90901955-90901974 | MS.gene40286:CDS | 45.0% |
| !! | CTGTTCGGTGGATTTTAGGT+TGG | - | chr3.3:90900146-90900165 | None:intergenic | 45.0% |
| !! | TCCTGACCTGGATTTTGATC+AGG | + | chr3.3:90901893-90901912 | MS.gene40286:intron | 45.0% |
| !!! | GAGTTGGTTTTGAAGCTTGG+TGG | - | chr3.3:90900468-90900487 | None:intergenic | 45.0% |
| AAGCTCAAGGAAGCAGCTGA+GGG | + | chr3.3:90901919-90901938 | MS.gene40286:CDS | 50.0% | |
| ATAGAGGGGCAGCGAAAGAA+AGG | + | chr3.3:90902271-90902290 | MS.gene40286:intron | 50.0% | |
| CAGAGACATGAATCCTGACC+TGG | + | chr3.3:90901881-90901900 | MS.gene40286:intron | 50.0% | |
| CTCCCATGAGTTCAACAGCT+TGG | - | chr3.3:90902329-90902348 | None:intergenic | 50.0% | |
| GCTAACCCCACTTGATTGCT+TGG | - | chr3.3:90902210-90902229 | None:intergenic | 50.0% | |
| TAAGCTCAAGGAAGCAGCTG+AGG | + | chr3.3:90901918-90901937 | MS.gene40286:CDS | 50.0% | |
| TACCTGTGTTCGTCCTGCAT+CGG | - | chr3.3:90901971-90901990 | None:intergenic | 50.0% | |
| TAGAGGGGCAGCGAAAGAAA+GGG | + | chr3.3:90902272-90902291 | MS.gene40286:intron | 50.0% | |
| ! | AAGGAAGCAGCTGAGGGTAT+TGG | + | chr3.3:90901925-90901944 | MS.gene40286:CDS | 50.0% |
| ! | ACCGATGTTGGTAGGTGGAT+TGG | - | chr3.3:90901332-90901351 | None:intergenic | 50.0% |
| ! | TAGCCGTGTAGGTGTTGTGT+TGG | - | chr3.3:90900630-90900649 | None:intergenic | 50.0% |
| !! | ACTGTTCTTGCTGTTGGACC+TGG | + | chr3.3:90902478-90902497 | MS.gene40286:intron | 50.0% |
| !! | AGGAAGCAGCTGAGGGTATT+GGG | + | chr3.3:90901926-90901945 | MS.gene40286:CDS | 50.0% |
| !! | GCAATTCTGGATTCGGTGAC+TGG | + | chr3.3:90902645-90902664 | MS.gene40286:CDS | 50.0% |
| !! | TTCTGGATTCGGTGACTGGA+AGG | + | chr3.3:90902649-90902668 | MS.gene40286:CDS | 50.0% |
| TGTATGGCAGATGCTGCCAC+CGG | + | chr3.3:90901275-90901294 | MS.gene40286:intron | 55.0% | |
| TGTTACGGGTGTAGCCGTGT+AGG | - | chr3.3:90900641-90900660 | None:intergenic | 55.0% | |
| !! | GGATTCGGTGACTGGAAGGT+TGG | + | chr3.3:90902653-90902672 | MS.gene40286:CDS | 55.0% |
| CTCCGATGCAGGACGAACAC+AGG | + | chr3.3:90901966-90901985 | MS.gene40286:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90900136 | 90902718 | 90900136 | ID=MS.gene40286 |
| chr3.3 | mRNA | 90900136 | 90902718 | 90900136 | ID=MS.gene40286.t1;Parent=MS.gene40286 |
| chr3.3 | exon | 90900136 | 90900165 | 90900136 | ID=MS.gene40286.t1.exon1;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90900136 | 90900165 | 90900136 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90900314 | 90900526 | 90900314 | ID=MS.gene40286.t1.exon2;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90900314 | 90900526 | 90900314 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90901083 | 90901143 | 90901083 | ID=MS.gene40286.t1.exon3;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90901083 | 90901143 | 90901083 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90901285 | 90901321 | 90901285 | ID=MS.gene40286.t1.exon4;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90901285 | 90901321 | 90901285 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90901755 | 90901832 | 90901755 | ID=MS.gene40286.t1.exon5;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90901755 | 90901832 | 90901755 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90901915 | 90901987 | 90901915 | ID=MS.gene40286.t1.exon6;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90901915 | 90901987 | 90901915 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90902187 | 90902218 | 90902187 | ID=MS.gene40286.t1.exon7;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90902187 | 90902218 | 90902187 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| chr3.3 | exon | 90902637 | 90902718 | 90902637 | ID=MS.gene40286.t1.exon8;Parent=MS.gene40286.t1 |
| chr3.3 | CDS | 90902637 | 90902718 | 90902637 | ID=cds.MS.gene40286.t1;Parent=MS.gene40286.t1 |
| Gene Sequence |
| Protein sequence |
