Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40670.t1 | KEH30380.1 | 96.8 | 279 | 9 | 0 | 7 | 285 | 42 | 320 | 7.20E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40670.t1 | Q9XII1 | 39.8 | 309 | 145 | 6 | 7 | 285 | 10 | 307 | 2.8e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40670.t1 | A0A072UX16 | 96.8 | 279 | 9 | 0 | 7 | 285 | 42 | 320 | 5.2e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene40670 | 0.826049 | 3.36E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene40670 | -0.84439 | 7.79E-59 | -1.69E-46 |
| MS.gene050558 | MS.gene40670 | 0.809143 | 2.19E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene40670 | 0.812271 | 4.61E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene40670 | 0.831035 | 2.10E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene40670 | 0.816728 | 4.76E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene40670 | -0.86743 | 1.38E-65 | -1.69E-46 |
| MS.gene052358 | MS.gene40670 | -0.822587 | 2.19E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene40670 | 0.817116 | 3.90E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene40670 | 0.822026 | 2.95E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene40670 | 0.836022 | 1.19E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene40670 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene40670 | 0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene40670 | 0.816235 | 6.14E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene40670 | -0.81235 | 4.43E-51 | -1.69E-46 |
| MS.gene059899 | MS.gene40670 | 0.813308 | 2.73E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene40670 | -0.821779 | 3.37E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene40670 | 0.810041 | 1.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40670.t1 | MTR_4g068880 | 96.774 | 279 | 9 | 0 | 7 | 285 | 42 | 320 | 0.0 | 561 |
| MS.gene40670.t1 | MTR_4g068880 | 96.416 | 279 | 10 | 0 | 7 | 285 | 42 | 320 | 0.0 | 559 |
| MS.gene40670.t1 | MTR_0026s0200 | 94.714 | 227 | 12 | 0 | 59 | 285 | 552 | 778 | 2.57e-154 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40670.t1 | AT2G16070 | 46.945 | 311 | 120 | 8 | 7 | 285 | 10 | 307 | 3.91e-78 | 239 |
| MS.gene40670.t1 | AT2G16070 | 48.899 | 227 | 99 | 6 | 63 | 285 | 11 | 224 | 3.84e-61 | 193 |
| MS.gene40670.t1 | AT2G16070 | 48.899 | 227 | 99 | 6 | 63 | 285 | 11 | 224 | 3.84e-61 | 193 |
Find 62 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGAACCTTCTGCAAATT+AGG | 0.192387 | 4.1:-33494250 | None:intergenic |
| GACTCAGCTTTCTTCCTTGC+AGG | 0.213229 | 4.1:+33491388 | MS.gene40670:CDS |
| GAGATCTACCACTGAAAATA+AGG | 0.238835 | 4.1:+33494315 | MS.gene40670:CDS |
| CCACATCCATAGTTTATATC+AGG | 0.316941 | 4.1:-33494445 | None:intergenic |
| GTTGCAGCAACAGCTGAAAA+TGG | 0.342115 | 4.1:-33494421 | None:intergenic |
| CCTCGTCTTCATCGTCTTCA+AGG | 0.349354 | 4.1:-33491316 | None:intergenic |
| GGAGTATAAAGGAAAAGATT+TGG | 0.355923 | 4.1:+33493889 | MS.gene40670:CDS |
| GAAATGATAGTATTTAGTTC+TGG | 0.363322 | 4.1:+33491083 | None:intergenic |
| TTGCGATGCACTCGAAGCTT+TGG | 0.364488 | 4.1:+33491364 | MS.gene40670:CDS |
| GTGTCCACCTGGTAGAGTTT+TGG | 0.371016 | 4.1:+33494348 | MS.gene40670:CDS |
| GCAACACCTGATATAAACTA+TGG | 0.384435 | 4.1:+33494439 | MS.gene40670:CDS |
| ATATTGAGTATGTCAGGATT+TGG | 0.388003 | 4.1:+33494226 | MS.gene40670:CDS |
| AATAAGCTCAAGGAGTATAA+AGG | 0.395809 | 4.1:+33493878 | MS.gene40670:CDS |
| TATGGAGGGCGGGTTGGATA+AGG | 0.395815 | 4.1:-33493980 | None:intergenic |
| GGTTGGCTCCACTGTTTCAC+TGG | 0.400114 | 4.1:-33493939 | None:intergenic |
| CACTGTTTCACTGGCAAAAG+TGG | 0.402405 | 4.1:-33493930 | None:intergenic |
| TCGTCTTCAAGGAGACCATT+AGG | 0.408182 | 4.1:-33491305 | None:intergenic |
| AAACCAACTTCTTCTCCTAA+TGG | 0.424275 | 4.1:+33491290 | MS.gene40670:CDS |
| TTGTCAAGAGACATGGAATA+TGG | 0.435035 | 4.1:-33493998 | None:intergenic |
| AGCAAAATCATGTTGAAGAC+GGG | 0.457681 | 4.1:+33494122 | MS.gene40670:CDS |
| AAAGCAGTGCTCACAGTTGT+TGG | 0.459690 | 4.1:+33494193 | MS.gene40670:CDS |
| CACAGACTAGAAAATGAGAA+TGG | 0.463269 | 4.1:+33494292 | MS.gene40670:CDS |
| AGGAGGAAGTAGTAGATCAT+TGG | 0.467708 | 4.1:-33493960 | None:intergenic |
| ATGGAATATGGAGGGCGGGT+TGG | 0.479831 | 4.1:-33493986 | None:intergenic |
| ATCCCTTCTGTCAATAAGTC+CGG | 0.488206 | 4.1:+33494037 | MS.gene40670:CDS |
| GTCAATAAGTCCGGTCGCAA+TGG | 0.494855 | 4.1:+33494046 | MS.gene40670:CDS |
| GTATCAATATTGAGTATGTC+AGG | 0.496740 | 4.1:+33494220 | MS.gene40670:CDS |
| TAGCGAGAGCCACAGAACTT+AGG | 0.501152 | 4.1:+33491243 | MS.gene40670:CDS |
| GGAGGGCGGGTTGGATAAGG+AGG | 0.511572 | 4.1:-33493977 | None:intergenic |
| AAGACGAGGATGCTACTGAT+AGG | 0.511739 | 4.1:+33491330 | MS.gene40670:CDS |
| CACACTTGATAATGTGATTG+AGG | 0.511821 | 4.1:+33494075 | MS.gene40670:CDS |
| CTAATTTGCAGAAGGTTCGT+TGG | 0.524180 | 4.1:+33494251 | MS.gene40670:CDS |
| ACAGACTAGAAAATGAGAAT+GGG | 0.537258 | 4.1:+33494293 | MS.gene40670:CDS |
| GATCTTCAACCTAAGTTCTG+TGG | 0.541601 | 4.1:-33491252 | None:intergenic |
| AGACCATTAGGAGAAGAAGT+TGG | 0.548035 | 4.1:-33491293 | None:intergenic |
| AGATCTACCACTGAAAATAA+GGG | 0.549200 | 4.1:+33494316 | MS.gene40670:CDS |
| CGACCGGACTTATTGACAGA+AGG | 0.550670 | 4.1:-33494040 | None:intergenic |
| CTCGATGTCTCGTGAAAGAG+AGG | 0.553753 | 4.1:+33494389 | MS.gene40670:CDS |
| ACCACTGAAAATAAGGGTGA+TGG | 0.554032 | 4.1:+33494322 | MS.gene40670:CDS |
| AGACATGGAATATGGAGGGC+GGG | 0.557062 | 4.1:-33493990 | None:intergenic |
| GGTGATGGACAGTGTCCACC+TGG | 0.562228 | 4.1:+33494337 | MS.gene40670:CDS |
| TCCAGCACCAAAACTCTACC+AGG | 0.564759 | 4.1:-33494355 | None:intergenic |
| ATTTGGTCCTAATTTGCAGA+AGG | 0.566190 | 4.1:+33494243 | MS.gene40670:CDS |
| GAGCAAAATCATGTTGAAGA+CGG | 0.571685 | 4.1:+33494121 | MS.gene40670:CDS |
| CCTGATATAAACTATGGATG+TGG | 0.573675 | 4.1:+33494445 | MS.gene40670:CDS |
| TGTGATTAATCCATTGCGAC+CGG | 0.579636 | 4.1:-33494056 | None:intergenic |
| AATGCTAATTAATAAGCTCA+AGG | 0.585821 | 4.1:+33493868 | MS.gene40670:CDS |
| TCAAGAGACATGGAATATGG+AGG | 0.598159 | 4.1:-33493995 | None:intergenic |
| GACCGGACTTATTGACAGAA+GGG | 0.606790 | 4.1:-33494039 | None:intergenic |
| ATTTAGGGATAGAACCTGCA+AGG | 0.611650 | 4.1:-33491402 | None:intergenic |
| ATATTGCTTGTCAAGAGACA+TGG | 0.613371 | 4.1:-33494005 | None:intergenic |
| ATACGAAAGAGAAATTGCCT+TGG | 0.615830 | 4.1:+33493823 | MS.gene40670:CDS |
| CAAGAGACATGGAATATGGA+GGG | 0.618949 | 4.1:-33493994 | None:intergenic |
| GGAAGTAGTAGATCATTGGT+TGG | 0.626172 | 4.1:-33493956 | None:intergenic |
| TTCGTTGGAATGTACAACGC+AGG | 0.626741 | 4.1:+33494266 | MS.gene40670:CDS |
| TTTGGTGCTGGAAAATGGGG+AGG | 0.629531 | 4.1:+33494366 | MS.gene40670:CDS |
| CCTTGAAGACGATGAAGACG+AGG | 0.636811 | 4.1:+33491316 | MS.gene40670:CDS |
| GAGACATGGAATATGGAGGG+CGG | 0.660233 | 4.1:-33493991 | None:intergenic |
| GCAAAATCATGTTGAAGACG+GGG | 0.661988 | 4.1:+33494123 | MS.gene40670:CDS |
| AGTGCTCACAGTTGTTGGTG+TGG | 0.679889 | 4.1:+33494198 | MS.gene40670:CDS |
| AGCACCAAAACTCTACCAGG+TGG | 0.702063 | 4.1:-33494352 | None:intergenic |
| TCGATGTCTCGTGAAAGAGA+GGG | 0.703822 | 4.1:+33494390 | MS.gene40670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTCAAAACATGATT+GGG | + | chr4.1:33493740-33493759 | MS.gene40670:intron | 15.0% |
| !! | GAAACTTAAAATAAATGTAA+GGG | + | chr4.1:33492652-33492671 | MS.gene40670:intron | 15.0% |
| !! | TGAAACTTAAAATAAATGTA+AGG | + | chr4.1:33492651-33492670 | MS.gene40670:intron | 15.0% |
| !!! | ACATTTAAAAAATTTCAAGT+TGG | - | chr4.1:33492024-33492043 | None:intergenic | 15.0% |
| !!! | TTGAAATTTTTTAAATGTAG+AGG | + | chr4.1:33492026-33492045 | MS.gene40670:intron | 15.0% |
| !!! | TTTTTCAATTTCTTTTAAGA+TGG | + | chr4.1:33493627-33493646 | MS.gene40670:intron | 15.0% |
| !! | AAATATAGCATCAAAACAAT+GGG | - | chr4.1:33491546-33491565 | None:intergenic | 20.0% |
| !! | ACTTACAACATTATTTAACT+CGG | - | chr4.1:33491742-33491761 | None:intergenic | 20.0% |
| !! | AGAGTTAATTCAAAATTTGA+TGG | + | chr4.1:33491960-33491979 | MS.gene40670:intron | 20.0% |
| !! | ATAAGACAATGCAAATAATA+TGG | - | chr4.1:33491114-33491133 | None:intergenic | 20.0% |
| !! | ATTAAGTGTTTCATATAAAG+AGG | - | chr4.1:33492173-33492192 | None:intergenic | 20.0% |
| !! | GAAAATATTCAAAACATGAT+TGG | + | chr4.1:33493739-33493758 | MS.gene40670:intron | 20.0% |
| !! | GAGATAATGAATTAGATTTA+GGG | - | chr4.1:33491420-33491439 | None:intergenic | 20.0% |
| !! | TAAATATAGCATCAAAACAA+TGG | - | chr4.1:33491547-33491566 | None:intergenic | 20.0% |
| !! | TAATTATTGTGTGTATTTAC+AGG | + | chr4.1:33493781-33493800 | MS.gene40670:intron | 20.0% |
| !! | TGAGATAATGAATTAGATTT+AGG | - | chr4.1:33491421-33491440 | None:intergenic | 20.0% |
| !! | TGTAAATACACACAATAATT+AGG | - | chr4.1:33493782-33493801 | None:intergenic | 20.0% |
| !! | TTCAAAATGAGTAATTGTTA+GGG | - | chr4.1:33492762-33492781 | None:intergenic | 20.0% |
| !! | TTTCAAAATGAGTAATTGTT+AGG | - | chr4.1:33492763-33492782 | None:intergenic | 20.0% |
| !!! | AAGCTTAAAAAGTTTTAAGT+TGG | + | chr4.1:33491822-33491841 | MS.gene40670:intron | 20.0% |
| !!! | ATATTTTATTGTTGTTGCTA+TGG | + | chr4.1:33493716-33493735 | MS.gene40670:intron | 20.0% |
| !!! | ATTTATTTTAGGTTTCAAGT+TGG | + | chr4.1:33492437-33492456 | MS.gene40670:intron | 20.0% |
| !!! | GTATACACAAAATCTTATTT+TGG | + | chr4.1:33492991-33493010 | MS.gene40670:intron | 20.0% |
| !!! | TATTTTATTGTTGTTGCTAT+GGG | + | chr4.1:33493717-33493736 | MS.gene40670:intron | 20.0% |
| !!! | TTGTCTTGTACATTTATTTT+AGG | + | chr4.1:33492426-33492445 | MS.gene40670:intron | 20.0% |
| ! | AAAAAAACAATGGAAGAAGA+AGG | + | chr4.1:33491206-33491225 | MS.gene40670:intron | 25.0% |
| ! | AAAAACTAGTTACGATATGT+AGG | - | chr4.1:33492386-33492405 | None:intergenic | 25.0% |
| ! | AAGCATAATTGCAAAATCAT+AGG | - | chr4.1:33492954-33492973 | None:intergenic | 25.0% |
| ! | AATACTACTTCTAAACATGA+TGG | + | chr4.1:33492901-33492920 | MS.gene40670:intron | 25.0% |
| ! | AATGCTAATTAATAAGCTCA+AGG | + | chr4.1:33493868-33493887 | MS.gene40670:CDS | 25.0% |
| ! | ACATGCATATAAAATACCAT+AGG | - | chr4.1:33493321-33493340 | None:intergenic | 25.0% |
| ! | AGAATTGTTACATTAATCGT+AGG | - | chr4.1:33493381-33493400 | None:intergenic | 25.0% |
| ! | AGATTTGACCAATTATTATG+AGG | + | chr4.1:33492104-33492123 | MS.gene40670:intron | 25.0% |
| ! | CACAAGAAAGAAAAAAACAA+TGG | + | chr4.1:33491196-33491215 | MS.gene40670:intron | 25.0% |
| ! | TATTTGCATTGTCTTATACT+TGG | + | chr4.1:33491117-33491136 | MS.gene40670:intron | 25.0% |
| ! | TCAAAATTTGACAGAATTGA+TGG | + | chr4.1:33492593-33492612 | MS.gene40670:intron | 25.0% |
| ! | TCAAAATTTGATGGAATTGA+TGG | + | chr4.1:33491969-33491988 | MS.gene40670:intron | 25.0% |
| ! | TTCATGAATTGCTACATAAA+AGG | - | chr4.1:33491589-33491608 | None:intergenic | 25.0% |
| !! | ACTTGTTGAACACTAAATAT+AGG | + | chr4.1:33493511-33493530 | MS.gene40670:intron | 25.0% |
| !! | ATTTTACGTTCAATTGGTAA+GGG | - | chr4.1:33493424-33493443 | None:intergenic | 25.0% |
| !! | CATTGTTTGGTTTATATTGT+TGG | + | chr4.1:33493675-33493694 | MS.gene40670:intron | 25.0% |
| !! | GATATATTGATTGACGATAA+AGG | - | chr4.1:33492696-33492715 | None:intergenic | 25.0% |
| !! | TTGCAAAATCATAGGATTTT+AGG | - | chr4.1:33492946-33492965 | None:intergenic | 25.0% |
| !!! | AGGATTTTAGGATTAAAATC+AGG | - | chr4.1:33492934-33492953 | None:intergenic | 25.0% |
| !!! | CTTTGTTTGTTGGTTTTTTT+CGG | - | chr4.1:33491149-33491168 | None:intergenic | 25.0% |
| !!! | TGATTTTGCTCTTTTTCATT+TGG | - | chr4.1:33494112-33494131 | None:intergenic | 25.0% |
| AAATCCAGCCTCATAATAAT+TGG | - | chr4.1:33492115-33492134 | None:intergenic | 30.0% | |
| ACAGACTAGAAAATGAGAAT+GGG | + | chr4.1:33494293-33494312 | MS.gene40670:CDS | 30.0% | |
| AGAATCGTTTCAAAGAAAAG+TGG | - | chr4.1:33493033-33493052 | None:intergenic | 30.0% | |
| AGATCTACCACTGAAAATAA+GGG | + | chr4.1:33494316-33494335 | MS.gene40670:CDS | 30.0% | |
| ATATTGAGTATGTCAGGATT+TGG | + | chr4.1:33494226-33494245 | MS.gene40670:CDS | 30.0% | |
| CAGTACATTATGTCATTGTT+TGG | + | chr4.1:33493662-33493681 | MS.gene40670:intron | 30.0% | |
| CCAAAAAAGCAAAAATGACA+AGG | - | chr4.1:33493477-33493496 | None:intergenic | 30.0% | |
| GGAGTATAAAGGAAAAGATT+TGG | + | chr4.1:33493889-33493908 | MS.gene40670:CDS | 30.0% | |
| GTATCAATATTGAGTATGTC+AGG | + | chr4.1:33494220-33494239 | MS.gene40670:CDS | 30.0% | |
| TACATTACACTTGAAATGCT+TGG | - | chr4.1:33493282-33493301 | None:intergenic | 30.0% | |
| TACTGACATTAGTAACGTAA+AGG | + | chr4.1:33492621-33492640 | MS.gene40670:intron | 30.0% | |
| TGTAGGAAGTTAGTTACTTA+CGG | - | chr4.1:33492369-33492388 | None:intergenic | 30.0% | |
| TTGAAACGATTCTACGATTA+TGG | + | chr4.1:33493040-33493059 | MS.gene40670:intron | 30.0% | |
| ! | AATAAGCTCAAGGAGTATAA+AGG | + | chr4.1:33493878-33493897 | MS.gene40670:CDS | 30.0% |
| ! | AGCATTTCAAGTGTAATGTA+AGG | + | chr4.1:33493282-33493301 | MS.gene40670:intron | 30.0% |
| ! | ATCAGGATTTTACGTTCAAT+TGG | - | chr4.1:33493430-33493449 | None:intergenic | 30.0% |
| ! | CTGAATAAGTCTTTGTTTGT+TGG | - | chr4.1:33491159-33491178 | None:intergenic | 30.0% |
| ! | GATTTTACGTTCAATTGGTA+AGG | - | chr4.1:33493425-33493444 | None:intergenic | 30.0% |
| ! | TCAACCTAAACCTAATTTGT+TGG | + | chr4.1:33491708-33491727 | MS.gene40670:intron | 30.0% |
| ! | TTTTACGTTCAATTGGTAAG+GGG | - | chr4.1:33493423-33493442 | None:intergenic | 30.0% |
| ! | TTTTCTGACGTACAATAAGT+TGG | + | chr4.1:33492468-33492487 | MS.gene40670:intron | 30.0% |
| !! | CAAAGAAAAGTGGATTATAC+AGG | - | chr4.1:33493023-33493042 | None:intergenic | 30.0% |
| !!! | AGGTTTTTTTGTCTTACCTA+TGG | + | chr4.1:33493302-33493321 | MS.gene40670:intron | 30.0% |
| !!! | CCTTGTCATTTTTGCTTTTT+TGG | + | chr4.1:33493474-33493493 | MS.gene40670:intron | 30.0% |
| !!! | TATCGTAACTAGTTTTTCGA+TGG | + | chr4.1:33492389-33492408 | MS.gene40670:intron | 30.0% |
| AAAATTCACAAAGCAACCGA+CGG | - | chr4.1:33493611-33493630 | None:intergenic | 35.0% | |
| AAACCAACTTCTTCTCCTAA+TGG | + | chr4.1:33491290-33491309 | MS.gene40670:CDS | 35.0% | |
| ACAATGGAAGAAGAAGGAAT+AGG | + | chr4.1:33491212-33491231 | MS.gene40670:intron | 35.0% | |
| ACTTACGGCGTTATTTAACT+CGG | - | chr4.1:33492354-33492373 | None:intergenic | 35.0% | |
| AGCAAAATCATGTTGAAGAC+GGG | + | chr4.1:33494122-33494141 | MS.gene40670:CDS | 35.0% | |
| ATAAACTAGCGACAGTATGT+AGG | - | chr4.1:33491774-33491793 | None:intergenic | 35.0% | |
| ATACGAAAGAGAAATTGCCT+TGG | + | chr4.1:33493823-33493842 | MS.gene40670:CDS | 35.0% | |
| ATATTGCTTGTCAAGAGACA+TGG | - | chr4.1:33494008-33494027 | None:intergenic | 35.0% | |
| CAATGGAAGAAGAAGGAATA+GGG | + | chr4.1:33491213-33491232 | MS.gene40670:intron | 35.0% | |
| CACAGACTAGAAAATGAGAA+TGG | + | chr4.1:33494292-33494311 | MS.gene40670:CDS | 35.0% | |
| CATGAAACACTTGACAAACA+CGG | + | chr4.1:33491603-33491622 | MS.gene40670:intron | 35.0% | |
| CCACATCCATAGTTTATATC+AGG | - | chr4.1:33494448-33494467 | None:intergenic | 35.0% | |
| CCTGATATAAACTATGGATG+TGG | + | chr4.1:33494445-33494464 | MS.gene40670:CDS | 35.0% | |
| GAGATCTACCACTGAAAATA+AGG | + | chr4.1:33494315-33494334 | MS.gene40670:CDS | 35.0% | |
| GAGCAAAATCATGTTGAAGA+CGG | + | chr4.1:33494121-33494140 | MS.gene40670:CDS | 35.0% | |
| GCAACACCTGATATAAACTA+TGG | + | chr4.1:33494439-33494458 | MS.gene40670:CDS | 35.0% | |
| GGAAAATCATATTCGTGTAG+TGG | - | chr4.1:33492841-33492860 | None:intergenic | 35.0% | |
| GGGGCTAAAAATTCAAGAAA+AGG | + | chr4.1:33494142-33494161 | MS.gene40670:CDS | 35.0% | |
| GTCACCAACAAATTAGGTTT+AGG | - | chr4.1:33491715-33491734 | None:intergenic | 35.0% | |
| GTTATAGTAGTTCGTTCAAC+AGG | + | chr4.1:33491469-33491488 | MS.gene40670:intron | 35.0% | |
| TCAACCTAAACCTAAATCGT+TGG | + | chr4.1:33492292-33492311 | MS.gene40670:intron | 35.0% | |
| TGTATACCCATAATCGCTAA+GGG | - | chr4.1:33492978-33492997 | None:intergenic | 35.0% | |
| TTAGATGTATCTACGACTGT+CGG | + | chr4.1:33491660-33491679 | MS.gene40670:intron | 35.0% | |
| TTATTTAACTCGGAGTGGTA+CGG | - | chr4.1:33492344-33492363 | None:intergenic | 35.0% | |
| TTGACCAATTATTATGAGGC+TGG | + | chr4.1:33492108-33492127 | MS.gene40670:intron | 35.0% | |
| TTGTCAAGAGACATGGAATA+TGG | - | chr4.1:33494001-33494020 | None:intergenic | 35.0% | |
| ! | ACCAGTTTGAAGCTAAAATC+TGG | + | chr4.1:33492049-33492068 | MS.gene40670:intron | 35.0% |
| ! | ATTTGGTCCTAATTTGCAGA+AGG | + | chr4.1:33494243-33494262 | MS.gene40670:CDS | 35.0% |
| ! | TACTGTCGCTAGTTTATCAA+TGG | + | chr4.1:33491777-33491796 | MS.gene40670:intron | 35.0% |
| ! | TTCAGTTTAAAACGTCAACG+TGG | + | chr4.1:33491883-33491902 | MS.gene40670:intron | 35.0% |
| !! | AAATTTCAAGTTGGTCCCTT+AGG | - | chr4.1:33492015-33492034 | None:intergenic | 35.0% |
| !! | ACGATTTAGGTTTAGGTTGA+AGG | - | chr4.1:33492292-33492311 | None:intergenic | 35.0% |
| !! | CACACTTGATAATGTGATTG+AGG | + | chr4.1:33494075-33494094 | MS.gene40670:CDS | 35.0% |
| !!! | ACCAGATTTTAGCTTCAAAC+TGG | - | chr4.1:33492053-33492072 | None:intergenic | 35.0% |
| !!! | TAGGAGAAGAAGTTGGTTTT+TGG | - | chr4.1:33491289-33491308 | None:intergenic | 35.0% |
| AAATTCACAAAGCAACCGAC+GGG | - | chr4.1:33493610-33493629 | None:intergenic | 40.0% | |
| ACCACTGAAAATAAGGGTGA+TGG | + | chr4.1:33494322-33494341 | MS.gene40670:CDS | 40.0% | |
| AGACCATTAGGAGAAGAAGT+TGG | - | chr4.1:33491296-33491315 | None:intergenic | 40.0% | |
| AGGAGGAAGTAGTAGATCAT+TGG | - | chr4.1:33493963-33493982 | None:intergenic | 40.0% | |
| ATATAGGTATATCTCCCAGC+TGG | + | chr4.1:33493527-33493546 | MS.gene40670:intron | 40.0% | |
| ATCCCTTCTGTCAATAAGTC+CGG | + | chr4.1:33494037-33494056 | MS.gene40670:CDS | 40.0% | |
| ATGCCAACATCAGTAACCTA+AGG | + | chr4.1:33491996-33492015 | MS.gene40670:intron | 40.0% | |
| ATTTAGGGATAGAACCTGCA+AGG | - | chr4.1:33491405-33491424 | None:intergenic | 40.0% | |
| CAACGAACCTTCTGCAAATT+AGG | - | chr4.1:33494253-33494272 | None:intergenic | 40.0% | |
| CAAGAGACATGGAATATGGA+GGG | - | chr4.1:33493997-33494016 | None:intergenic | 40.0% | |
| CAAGCAAGGTAGTCAAAATC+AGG | - | chr4.1:33493447-33493466 | None:intergenic | 40.0% | |
| CATGATTGGGATTGCATTTC+TGG | + | chr4.1:33493753-33493772 | MS.gene40670:intron | 40.0% | |
| CCAATGTTCAAATTCCAGCT+GGG | - | chr4.1:33493544-33493563 | None:intergenic | 40.0% | |
| CCAGCTGGAATTTGAACATT+GGG | + | chr4.1:33493542-33493561 | MS.gene40670:intron | 40.0% | |
| CTATGTAGCACCAACGATTT+AGG | - | chr4.1:33492305-33492324 | None:intergenic | 40.0% | |
| GATCTTCAACCTAAGTTCTG+TGG | - | chr4.1:33491255-33491274 | None:intergenic | 40.0% | |
| GCAAAATCATGTTGAAGACG+GGG | + | chr4.1:33494123-33494142 | MS.gene40670:CDS | 40.0% | |
| GGAAGTAGTAGATCATTGGT+TGG | - | chr4.1:33493959-33493978 | None:intergenic | 40.0% | |
| GGACATGTCACCAACAAATT+AGG | - | chr4.1:33491721-33491740 | None:intergenic | 40.0% | |
| GTGTATACCCATAATCGCTA+AGG | - | chr4.1:33492979-33492998 | None:intergenic | 40.0% | |
| GTGTTCAACAAGTCTCAGAT+AGG | - | chr4.1:33493504-33493523 | None:intergenic | 40.0% | |
| TATCAGTGTAGTGTCATGTC+TGG | - | chr4.1:33491632-33491651 | None:intergenic | 40.0% | |
| TCAAGAGACATGGAATATGG+AGG | - | chr4.1:33493998-33494017 | None:intergenic | 40.0% | |
| TGCCAACATCAGTAACCTAA+GGG | + | chr4.1:33491997-33492016 | MS.gene40670:intron | 40.0% | |
| TGTCATGTAAGTAGCGTCAT+AGG | + | chr4.1:33492245-33492264 | MS.gene40670:intron | 40.0% | |
| TGTGATTAATCCATTGCGAC+CGG | - | chr4.1:33494059-33494078 | None:intergenic | 40.0% | |
| ! | ACTGTTTTCAATCTCAGCCA+AGG | - | chr4.1:33493843-33493862 | None:intergenic | 40.0% |
| ! | AGCACCAACGATTTAGGTTT+AGG | - | chr4.1:33492299-33492318 | None:intergenic | 40.0% |
| ! | CTAATTTGCAGAAGGTTCGT+TGG | + | chr4.1:33494251-33494270 | MS.gene40670:CDS | 40.0% |
| !! | CTAAATCGTTGGTGCTACAT+AGG | + | chr4.1:33492303-33492322 | MS.gene40670:intron | 40.0% |
| !!! | AGAGTTTTGGTGCTGGAAAA+TGG | + | chr4.1:33494361-33494380 | MS.gene40670:CDS | 40.0% |
| !!! | AGTTTTGGTGCTGGAAAATG+GGG | + | chr4.1:33494363-33494382 | MS.gene40670:CDS | 40.0% |
| !!! | GAGTTTTGGTGCTGGAAAAT+GGG | + | chr4.1:33494362-33494381 | MS.gene40670:CDS | 40.0% |
| !!! | TCCATCACCCTTATTTTCAG+TGG | - | chr4.1:33494326-33494345 | None:intergenic | 40.0% |
| AAAGCAGTGCTCACAGTTGT+TGG | + | chr4.1:33494193-33494212 | MS.gene40670:CDS | 45.0% | |
| AAGACGAGGATGCTACTGAT+AGG | + | chr4.1:33491330-33491349 | MS.gene40670:CDS | 45.0% | |
| ACTATGTCTAAACGTCCACG+TGG | - | chr4.1:33492568-33492587 | None:intergenic | 45.0% | |
| ACTCTGTCTAAACATCCACG+TGG | - | chr4.1:33491945-33491964 | None:intergenic | 45.0% | |
| AGCCACGTGGACATTTCAAA+CGG | - | chr4.1:33492511-33492530 | None:intergenic | 45.0% | |
| AGTTCGTTCAACAGGAACGT+GGG | + | chr4.1:33491477-33491496 | MS.gene40670:intron | 45.0% | |
| ATGCTTGCCCTTAGCGATTA+TGG | + | chr4.1:33492968-33492987 | MS.gene40670:intron | 45.0% | |
| CACTGTTTCACTGGCAAAAG+TGG | - | chr4.1:33493933-33493952 | None:intergenic | 45.0% | |
| CCATCTCTGCTATCAGTAGA+AGG | + | chr4.1:33492859-33492878 | MS.gene40670:intron | 45.0% | |
| CCCAATGTTCAAATTCCAGC+TGG | - | chr4.1:33493545-33493564 | None:intergenic | 45.0% | |
| CCCAGCTGGAATTTGAACAT+TGG | + | chr4.1:33493541-33493560 | MS.gene40670:intron | 45.0% | |
| CCTTCTACTGATAGCAGAGA+TGG | - | chr4.1:33492862-33492881 | None:intergenic | 45.0% | |
| CGATTCTACGATTATGGTCG+CGG | + | chr4.1:33493046-33493065 | MS.gene40670:intron | 45.0% | |
| GACACACACGTGGATAACTT+CGG | + | chr4.1:33492537-33492556 | MS.gene40670:intron | 45.0% | |
| GACCGGACTTATTGACAGAA+GGG | - | chr4.1:33494042-33494061 | None:intergenic | 45.0% | |
| GACGCACACATGGATAACTT+CGG | + | chr4.1:33491914-33491933 | MS.gene40670:intron | 45.0% | |
| GTCCCTTAGGTTACTGATGT+TGG | - | chr4.1:33492002-33492021 | None:intergenic | 45.0% | |
| GTTGCAGCAACAGCTGAAAA+TGG | - | chr4.1:33494424-33494443 | None:intergenic | 45.0% | |
| TAGTTCGTTCAACAGGAACG+TGG | + | chr4.1:33491476-33491495 | MS.gene40670:intron | 45.0% | |
| TCGATGTCTCGTGAAAGAGA+GGG | + | chr4.1:33494390-33494409 | MS.gene40670:CDS | 45.0% | |
| TCGTCTTCAAGGAGACCATT+AGG | - | chr4.1:33491308-33491327 | None:intergenic | 45.0% | |
| TGCTTGCCCTTAGCGATTAT+GGG | + | chr4.1:33492969-33492988 | MS.gene40670:intron | 45.0% | |
| TTCGTTGGAATGTACAACGC+AGG | + | chr4.1:33494266-33494285 | MS.gene40670:CDS | 45.0% | |
| ! | CACTTTTGCCAGTGAAACAG+TGG | + | chr4.1:33493931-33493950 | MS.gene40670:CDS | 45.0% |
| ! | GACAAGGCATCTTACAAGCA+AGG | - | chr4.1:33493461-33493480 | None:intergenic | 45.0% |
| ! | TTCCGTTTGAAATGTCCACG+TGG | + | chr4.1:33492506-33492525 | MS.gene40670:intron | 45.0% |
| !! | TCATAGGAGTGTCGAACACT+TGG | + | chr4.1:33492261-33492280 | MS.gene40670:intron | 45.0% |
| ACACACGTGGATAACTTCGG+AGG | + | chr4.1:33492540-33492559 | MS.gene40670:intron | 50.0% | |
| AGACATGGAATATGGAGGGC+GGG | - | chr4.1:33493993-33494012 | None:intergenic | 50.0% | |
| AGCACCAAAACTCTACCAGG+TGG | - | chr4.1:33494355-33494374 | None:intergenic | 50.0% | |
| AGTGCTCACAGTTGTTGGTG+TGG | + | chr4.1:33494198-33494217 | MS.gene40670:CDS | 50.0% | |
| CCTCGTCTTCATCGTCTTCA+AGG | - | chr4.1:33491319-33491338 | None:intergenic | 50.0% | |
| CCTTGAAGACGATGAAGACG+AGG | + | chr4.1:33491316-33491335 | MS.gene40670:CDS | 50.0% | |
| CGACCGGACTTATTGACAGA+AGG | - | chr4.1:33494043-33494062 | None:intergenic | 50.0% | |
| CGGCGTTATTTAACTCGGAG+TGG | - | chr4.1:33492349-33492368 | None:intergenic | 50.0% | |
| CGTGTAGTGGCAAACACTGA+AGG | - | chr4.1:33492828-33492847 | None:intergenic | 50.0% | |
| CTCGATGTCTCGTGAAAGAG+AGG | + | chr4.1:33494389-33494408 | MS.gene40670:CDS | 50.0% | |
| GACTCAGCTTTCTTCCTTGC+AGG | + | chr4.1:33491388-33491407 | MS.gene40670:CDS | 50.0% | |
| GAGACATGGAATATGGAGGG+CGG | - | chr4.1:33493994-33494013 | None:intergenic | 50.0% | |
| GCACACATGGATAACTTCGG+AGG | + | chr4.1:33491917-33491936 | MS.gene40670:intron | 50.0% | |
| GTCAATAAGTCCGGTCGCAA+TGG | + | chr4.1:33494046-33494065 | MS.gene40670:CDS | 50.0% | |
| TAGCGAGAGCCACAGAACTT+AGG | + | chr4.1:33491243-33491262 | MS.gene40670:CDS | 50.0% | |
| TCCAGCACCAAAACTCTACC+AGG | - | chr4.1:33494358-33494377 | None:intergenic | 50.0% | |
| TGAACATTGGGTCGCCAAGT+GGG | + | chr4.1:33493554-33493573 | MS.gene40670:intron | 50.0% | |
| TTCTACGATTATGGTCGCGG+TGG | + | chr4.1:33493049-33493068 | MS.gene40670:intron | 50.0% | |
| TTGAACATTGGGTCGCCAAG+TGG | + | chr4.1:33493553-33493572 | MS.gene40670:intron | 50.0% | |
| TTGCGATGCACTCGAAGCTT+TGG | + | chr4.1:33491364-33491383 | MS.gene40670:CDS | 50.0% | |
| ! | GTGTCCACCTGGTAGAGTTT+TGG | + | chr4.1:33494348-33494367 | MS.gene40670:CDS | 50.0% |
| !! | ACCTGGTAGAGTTTTGGTGC+TGG | + | chr4.1:33494354-33494373 | MS.gene40670:CDS | 50.0% |
| !! | TGTCGGTGTCATGCAAGTGT+TGG | + | chr4.1:33491677-33491696 | MS.gene40670:intron | 50.0% |
| !! | TTTGGTGCTGGAAAATGGGG+AGG | + | chr4.1:33494366-33494385 | MS.gene40670:CDS | 50.0% |
| ATGGAATATGGAGGGCGGGT+TGG | - | chr4.1:33493989-33494008 | None:intergenic | 55.0% | |
| GAAGGGGCTAGATTCCCACT+TGG | - | chr4.1:33493571-33493590 | None:intergenic | 55.0% | |
| GGCTAACAGAGACACACACG+TGG | + | chr4.1:33492527-33492546 | MS.gene40670:intron | 55.0% | |
| GGCTAACAGAGACGCACACA+TGG | + | chr4.1:33491904-33491923 | MS.gene40670:intron | 55.0% | |
| GTGTGTCTCTGTTAGCCACG+TGG | - | chr4.1:33492524-33492543 | None:intergenic | 55.0% | |
| TACGATTATGGTCGCGGTGG+TGG | + | chr4.1:33493052-33493071 | MS.gene40670:intron | 55.0% | |
| TCACAAAGCAACCGACGGGT+GGG | - | chr4.1:33493606-33493625 | None:intergenic | 55.0% | |
| TTCACAAAGCAACCGACGGG+TGG | - | chr4.1:33493607-33493626 | None:intergenic | 55.0% | |
| ! | GGTTGGCTCCACTGTTTCAC+TGG | - | chr4.1:33493942-33493961 | None:intergenic | 55.0% |
| !! | ATAACTTCGGAGGTGCCACG+TGG | + | chr4.1:33491927-33491946 | MS.gene40670:intron | 55.0% |
| !! | CGCGGTGGTGGAACTACAAA+AGG | + | chr4.1:33493064-33493083 | MS.gene40670:intron | 55.0% |
| !! | TATGGAGGGCGGGTTGGATA+AGG | - | chr4.1:33493983-33494002 | None:intergenic | 55.0% |
| AAAGCAACCGACGGGTGGGA+CGG | - | chr4.1:33493602-33493621 | None:intergenic | 60.0% | |
| GTGGGACGGGTCTAGCAGAA+GGG | - | chr4.1:33493588-33493607 | None:intergenic | 60.0% | |
| TGGGACGGGTCTAGCAGAAG+GGG | - | chr4.1:33493587-33493606 | None:intergenic | 60.0% | |
| !! | GGTGATGGACAGTGTCCACC+TGG | + | chr4.1:33494337-33494356 | MS.gene40670:CDS | 60.0% |
| AAGCAACCGACGGGTGGGAC+GGG | - | chr4.1:33493601-33493620 | None:intergenic | 65.0% | |
| GGTGGGACGGGTCTAGCAGA+AGG | - | chr4.1:33493589-33493608 | None:intergenic | 65.0% | |
| !! | GGAGGGCGGGTTGGATAAGG+AGG | - | chr4.1:33493980-33493999 | None:intergenic | 65.0% |
| GCTAGACCCGTCCCACCCGT+CGG | + | chr4.1:33493592-33493611 | MS.gene40670:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33491086 | 33494471 | 33491086 | ID=MS.gene40670 |
| chr4.1 | mRNA | 33491086 | 33494471 | 33491086 | ID=MS.gene40670.t1;Parent=MS.gene40670 |
| chr4.1 | exon | 33491086 | 33491104 | 33491086 | ID=MS.gene40670.t1.exon1;Parent=MS.gene40670.t1 |
| chr4.1 | CDS | 33491086 | 33491104 | 33491086 | ID=cds.MS.gene40670.t1;Parent=MS.gene40670.t1 |
| chr4.1 | exon | 33491240 | 33491409 | 33491240 | ID=MS.gene40670.t1.exon2;Parent=MS.gene40670.t1 |
| chr4.1 | CDS | 33491240 | 33491409 | 33491240 | ID=cds.MS.gene40670.t1;Parent=MS.gene40670.t1 |
| chr4.1 | exon | 33493803 | 33494471 | 33493803 | ID=MS.gene40670.t1.exon3;Parent=MS.gene40670.t1 |
| chr4.1 | CDS | 33493803 | 33494471 | 33493803 | ID=cds.MS.gene40670.t1;Parent=MS.gene40670.t1 |
| Gene Sequence |
| Protein sequence |
