Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40917.t1 | XP_013461578.1 | 60.5 | 499 | 43 | 2 | 4 | 348 | 1 | 499 | 9.30E-143 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40917.t1 | P57681 | 35.6 | 491 | 147 | 8 | 7 | 339 | 14 | 493 | 3.0e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40917.t1 | A0A072V2M1 | 60.5 | 499 | 43 | 2 | 4 | 348 | 1 | 499 | 6.7e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene40917 | -0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene049438 | MS.gene40917 | -0.802573 | 5.26E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene40917 | 0.811938 | 5.45E-51 | -1.69E-46 |
| MS.gene057451 | MS.gene40917 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene057452 | MS.gene40917 | 0.827367 | 1.63E-54 | -1.69E-46 |
| MS.gene058661 | MS.gene40917 | 0.827509 | 1.50E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene40917 | 0.858615 | 7.30E-63 | -1.69E-46 |
| MS.gene060084 | MS.gene40917 | -0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene40917 | -0.806356 | 8.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40917.t1 | MTR_3g096675 | 95.434 | 219 | 10 | 0 | 4 | 222 | 1 | 219 | 6.73e-140 | 406 |
| MS.gene40917.t1 | MTR_3g096675 | 70.677 | 133 | 36 | 1 | 216 | 348 | 370 | 499 | 1.22e-51 | 179 |
| MS.gene40917.t1 | MTR_3g096675 | 95.434 | 219 | 10 | 0 | 4 | 222 | 1 | 219 | 9.92e-140 | 405 |
| MS.gene40917.t1 | MTR_3g096675 | 67.857 | 112 | 33 | 1 | 216 | 327 | 370 | 478 | 4.67e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40917.t1 | AT5G63910 | 47.945 | 219 | 99 | 4 | 7 | 221 | 14 | 221 | 5.04e-59 | 198 |
| MS.gene40917.t1 | AT5G63910 | 57.143 | 119 | 40 | 3 | 216 | 330 | 373 | 484 | 1.72e-32 | 127 |
Find 85 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGTTTCGCTTGTCAATTC+TGG | 0.101067 | 3.2:+80665609 | MS.gene40917:CDS |
| CTCATACTCTCAAGATATTT+TGG | 0.154731 | 3.2:+80667502 | MS.gene40917:CDS |
| TGTGCGTTCATCTAATTTAA+AGG | 0.169564 | 3.2:+80667534 | MS.gene40917:CDS |
| CGGGATTCTCTCTTGCCATT+TGG | 0.245752 | 3.2:+80665496 | MS.gene40917:CDS |
| AATATTTGCACCGTTTATAT+TGG | 0.251156 | 3.2:+80667390 | MS.gene40917:CDS |
| ATAAACGGTGCAAATATTTC+TGG | 0.265002 | 3.2:-80667385 | None:intergenic |
| GGGATTCTCTCTTGCCATTT+GGG | 0.277056 | 3.2:+80665497 | MS.gene40917:CDS |
| GTTGAGCTTGGGAGAGGTTA+AGG | 0.288936 | 3.2:-80665197 | None:intergenic |
| GTGTTCAAATACTTGGATTT+TGG | 0.299019 | 3.2:-80665331 | None:intergenic |
| ATTGACAGCGTGAAGATTCT+TGG | 0.316701 | 3.2:-80665433 | None:intergenic |
| GAGAGTATTTGCGGATGAAA+TGG | 0.328657 | 3.2:-80665290 | None:intergenic |
| TTTAAGAAGCTTATCGATAA+GGG | 0.344340 | 3.2:-80665568 | None:intergenic |
| TACAAAGCTTCTCAATCTTA+AGG | 0.354447 | 3.2:+80665458 | MS.gene40917:CDS |
| GAGTAGTAGCATGTGCATTT+TGG | 0.360316 | 3.2:-80665157 | None:intergenic |
| TTTGGTGGTTGGAGTGAGGT+CGG | 0.387575 | 3.2:-80665313 | None:intergenic |
| TAAGATGCAGAACTTTGTTC+AGG | 0.389538 | 3.2:+80665665 | MS.gene40917:CDS |
| GTTTAAGAAGCTTATCGATA+AGG | 0.395518 | 3.2:-80665569 | None:intergenic |
| CTTATCGATAAGGGGAAGAT+TGG | 0.406833 | 3.2:-80665559 | None:intergenic |
| TTGGTGGTTGGAGTGAGGTC+GGG | 0.414367 | 3.2:-80665312 | None:intergenic |
| GAGGACTTTACAAGACGAAT+TGG | 0.422318 | 3.2:+80666190 | MS.gene40917:CDS |
| AAGGCGAAAGAGCCTAGTTC+GGG | 0.425748 | 3.2:+80665477 | MS.gene40917:CDS |
| AGAGTATTTGCGGATGAAAT+GGG | 0.430268 | 3.2:-80665289 | None:intergenic |
| GACGGAGGAGCCGCCGATGC+CGG | 0.432322 | 3.2:-80665265 | None:intergenic |
| TTCTCTCTTGCCATTTGGGA+TGG | 0.441197 | 3.2:+80665501 | MS.gene40917:CDS |
| CATCGGAGTGTGGTTGAGCT+TGG | 0.441963 | 3.2:-80665209 | None:intergenic |
| TTGACAGCGTGAAGATTCTT+GGG | 0.442912 | 3.2:-80665432 | None:intergenic |
| AGGAGACAATTCGGATAGAC+TGG | 0.445496 | 3.2:+80667338 | MS.gene40917:CDS |
| TAAGGCGAAAGAGCCTAGTT+CGG | 0.451622 | 3.2:+80665476 | MS.gene40917:CDS |
| CTGTAGATGAGATGTTGAAA+TGG | 0.452671 | 3.2:+80666144 | MS.gene40917:CDS |
| TAAACGGTGCAAATATTTCT+GGG | 0.455052 | 3.2:-80667384 | None:intergenic |
| TGTTTCTCCTGCGACATTGA+CGG | 0.455280 | 3.2:-80665382 | None:intergenic |
| TGGTGTTGTGTTCAAATACT+TGG | 0.459199 | 3.2:-80665338 | None:intergenic |
| TGCATCATCGGAGCCGGCAT+CGG | 0.462396 | 3.2:+80665252 | MS.gene40917:CDS |
| GTGTGAGGAAGGAGACAATT+CGG | 0.473520 | 3.2:+80667329 | MS.gene40917:intron |
| TCATCCACCGTCTGCATCAT+CGG | 0.476603 | 3.2:+80665240 | MS.gene40917:CDS |
| AAGATTCTTGGGATGAAGAA+TGG | 0.476718 | 3.2:-80665421 | None:intergenic |
| GGACTCATGTTCATTCGCTA+TGG | 0.487288 | 3.2:+80665630 | MS.gene40917:CDS |
| TTTGCACCGTTTATATTGGA+TGG | 0.495880 | 3.2:+80667394 | MS.gene40917:CDS |
| ATCGGAGTGTGGTTGAGCTT+GGG | 0.502744 | 3.2:-80665208 | None:intergenic |
| GAACTTGTTTCCATCCCAAA+TGG | 0.508492 | 3.2:-80665511 | None:intergenic |
| TGTCGACCATCCAATATAAA+CGG | 0.509340 | 3.2:-80667400 | None:intergenic |
| ACCGTCTGCATCATCGGAGC+CGG | 0.517899 | 3.2:+80665246 | MS.gene40917:CDS |
| GCAAGAGAGAATCCCGAACT+AGG | 0.525477 | 3.2:-80665489 | None:intergenic |
| ATCATCGGAGCCGGCATCGG+CGG | 0.525914 | 3.2:+80665255 | MS.gene40917:CDS |
| TGACACGGCACTTGTCTCCA+TGG | 0.531172 | 3.2:-80667461 | None:intergenic |
| CTTCTCTGACAGTGTGAGGA+AGG | 0.531742 | 3.2:+80667318 | MS.gene40917:intron |
| ATATCTTGAGAGTATGAGTC+GGG | 0.531811 | 3.2:-80667497 | None:intergenic |
| GATGAGATGTTGAAATGGGC+TGG | 0.534685 | 3.2:+80666149 | MS.gene40917:CDS |
| AGTGTGGTTGAGCTTGGGAG+AGG | 0.537070 | 3.2:-80665203 | None:intergenic |
| GGCTATGCGGCCACCGACGA+TGG | 0.538930 | 3.2:-80665358 | None:intergenic |
| ATAGCCACCGTCAATGTCGC+AGG | 0.539213 | 3.2:+80665375 | MS.gene40917:CDS |
| TGAGGTCGGGAGAGTATTTG+CGG | 0.543131 | 3.2:-80665299 | None:intergenic |
| GATGATGCAGACGGTGGATG+AGG | 0.543189 | 3.2:-80665238 | None:intergenic |
| GGTGGATGAGGGTGGTGCAT+CGG | 0.546146 | 3.2:-80665226 | None:intergenic |
| GCAGGAGAAACATTCGAAGC+TGG | 0.563223 | 3.2:+80665393 | MS.gene40917:CDS |
| TAAGGAAGGTCAACAGCAGA+GGG | 0.570865 | 3.2:-80665179 | None:intergenic |
| TGTAGATGAGATGTTGAAAT+GGG | 0.572117 | 3.2:+80666145 | MS.gene40917:CDS |
| GAGGGTGGTGCATCGGAGTG+TGG | 0.575475 | 3.2:-80665219 | None:intergenic |
| TTAAGAAGCTTATCGATAAG+GGG | 0.585443 | 3.2:-80665567 | None:intergenic |
| GTTGTAATTTAGAATGCTGT+GGG | 0.585890 | 3.2:+80666071 | MS.gene40917:intron |
| GGCAATATTCTCAGCTGACA+CGG | 0.588163 | 3.2:-80667476 | None:intergenic |
| TTAAGGAAGGTCAACAGCAG+AGG | 0.588303 | 3.2:-80665180 | None:intergenic |
| ATTTCTGGGGCGTGATACTG+AGG | 0.589663 | 3.2:-80667370 | None:intergenic |
| GCGGATGAAATGGGCGACGG+AGG | 0.604671 | 3.2:-80665280 | None:intergenic |
| AGCTTGGGAGAGGTTAAGGA+AGG | 0.611324 | 3.2:-80665193 | None:intergenic |
| TCGAAGTACTACGAGGACAC+TGG | 0.618160 | 3.2:+80666101 | MS.gene40917:CDS |
| TGTTAATGCATTCGAAAATG+CGG | 0.629282 | 3.2:+80667432 | MS.gene40917:CDS |
| ATGATGCAGACGGTGGATGA+GGG | 0.634014 | 3.2:-80665237 | None:intergenic |
| AGTTGTAATTTAGAATGCTG+TGG | 0.634505 | 3.2:+80666070 | MS.gene40917:intron |
| CGAAAATGCGGCTAGCACCA+TGG | 0.638499 | 3.2:+80667444 | MS.gene40917:CDS |
| GCCGGCTCCGATGATGCAGA+CGG | 0.642532 | 3.2:-80665247 | None:intergenic |
| TGGGGCGTGATACTGAGGGT+AGG | 0.644200 | 3.2:-80667365 | None:intergenic |
| AATATCTTGAGAGTATGAGT+CGG | 0.644382 | 3.2:-80667498 | None:intergenic |
| TTCTCCTGCGACATTGACGG+TGG | 0.644522 | 3.2:-80665379 | None:intergenic |
| GAACACAACACCATCGTCGG+TGG | 0.654864 | 3.2:+80665348 | MS.gene40917:CDS |
| TTTGCGGATGAAATGGGCGA+CGG | 0.658555 | 3.2:-80665283 | None:intergenic |
| GGAGACAATTCGGATAGACT+GGG | 0.659729 | 3.2:+80667339 | MS.gene40917:CDS |
| CGACATTGACGGTGGCTATG+CGG | 0.668389 | 3.2:-80665371 | None:intergenic |
| TTTGAACACAACACCATCGT+CGG | 0.672278 | 3.2:+80665345 | MS.gene40917:CDS |
| ATGCAGACGGTGGATGAGGG+TGG | 0.674161 | 3.2:-80665234 | None:intergenic |
| GGCTCCGATGATGCAGACGG+TGG | 0.677335 | 3.2:-80665244 | None:intergenic |
| TTTCTGGGGCGTGATACTGA+GGG | 0.677633 | 3.2:-80667369 | None:intergenic |
| AAACGGTGCAAATATTTCTG+GGG | 0.678710 | 3.2:-80667383 | None:intergenic |
| GACTGTTTAATCTTACTACG+AGG | 0.719534 | 3.2:+80666171 | MS.gene40917:CDS |
| TAGCTTCTCGAAGTACTACG+AGG | 0.766550 | 3.2:+80666094 | MS.gene40917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATTAAGAATC+TGG | + | chr3.2:80666332-80666351 | MS.gene40917:intron | 10.0% |
| !! | ACAAATTCTTATAAAAATTA+TGG | - | chr3.2:80666598-80666617 | None:intergenic | 10.0% |
| !! | TAAACAAATAGAATAAAAAT+AGG | - | chr3.2:80665693-80665712 | None:intergenic | 10.0% |
| !!! | TCAAATTAAAAAGATTTTTT+GGG | + | chr3.2:80666835-80666854 | MS.gene40917:CDS | 10.0% |
| !!! | TTCAAATTAAAAAGATTTTT+TGG | + | chr3.2:80666834-80666853 | MS.gene40917:CDS | 10.0% |
| !! | TTAAATAAGTCAATCTAAAA+GGG | + | chr3.2:80666003-80666022 | MS.gene40917:intron | 15.0% |
| !!! | GATTTTTTTTAATTTATCGA+GGG | + | chr3.2:80666397-80666416 | MS.gene40917:intron | 15.0% |
| !!! | GTTTAAGTTGATTATTATTT+AGG | + | chr3.2:80665708-80665727 | MS.gene40917:intron | 15.0% |
| !!! | TCTGAAAAACTATATTTTTA+TGG | + | chr3.2:80666468-80666487 | MS.gene40917:intron | 15.0% |
| !! | AAAAATTAAGAATCTGGAAA+TGG | + | chr3.2:80666338-80666357 | MS.gene40917:intron | 20.0% |
| !! | AAAATTAAGAATCTGGAAAT+GGG | + | chr3.2:80666339-80666358 | MS.gene40917:intron | 20.0% |
| !! | AATAAGCTGAAAATAACTAA+TGG | + | chr3.2:80665936-80665955 | MS.gene40917:intron | 20.0% |
| !! | ATATTGTAATTAGGGTTAAT+AGG | - | chr3.2:80667117-80667136 | None:intergenic | 20.0% |
| !! | CAAAAGTTACAATTAGAAAT+TGG | - | chr3.2:80667291-80667310 | None:intergenic | 20.0% |
| !! | CTTAAATAAGTCAATCTAAA+AGG | + | chr3.2:80666002-80666021 | MS.gene40917:intron | 20.0% |
| !! | TACAATTAAATACCAACATT+AGG | - | chr3.2:80667196-80667215 | None:intergenic | 20.0% |
| !! | TATTAACCCTAATTACAATA+TGG | + | chr3.2:80667116-80667135 | MS.gene40917:intron | 20.0% |
| !! | TATTGTAATTAGGGTTAATA+GGG | - | chr3.2:80667116-80667135 | None:intergenic | 20.0% |
| !!! | GGATTTTTTTTAATTTATCG+AGG | + | chr3.2:80666396-80666415 | MS.gene40917:intron | 20.0% |
| !!! | TGATTTTTTTAATTTCCATG+TGG | - | chr3.2:80666919-80666938 | None:intergenic | 20.0% |
| !!! | TTCAAGTTTTTTTTTCCATA+GGG | + | chr3.2:80667051-80667070 | MS.gene40917:intron | 20.0% |
| !!! | TTTTTTTTAATTATGCCACA+TGG | + | chr3.2:80666901-80666920 | MS.gene40917:intron | 20.0% |
| ! | AACTGCTTATATACAAACTT+TGG | + | chr3.2:80665784-80665803 | MS.gene40917:intron | 25.0% |
| ! | AAGAAGAGAGAAAAAGAAAT+GGG | + | chr3.2:80666375-80666394 | MS.gene40917:intron | 25.0% |
| ! | AATATTTGCACCGTTTATAT+TGG | + | chr3.2:80667390-80667409 | MS.gene40917:CDS | 25.0% |
| ! | CAAAGTCCATATTGTAATTA+GGG | - | chr3.2:80667125-80667144 | None:intergenic | 25.0% |
| ! | TTTAAGAAGCTTATCGATAA+GGG | - | chr3.2:80665571-80665590 | None:intergenic | 25.0% |
| !! | GATTATTATTTAGGCTTGTT+TGG | + | chr3.2:80665717-80665736 | MS.gene40917:intron | 25.0% |
| !!! | ACCAAGGAATCTTTATTTTA+CGG | + | chr3.2:80667020-80667039 | MS.gene40917:intron | 25.0% |
| !!! | CTTCAAGTTTTTTTTTCCAT+AGG | + | chr3.2:80667050-80667069 | MS.gene40917:intron | 25.0% |
| !!! | TAATTTATCGAGGGTATTTT+AGG | + | chr3.2:80666406-80666425 | MS.gene40917:intron | 25.0% |
| !!! | TCAAGTTTTTTTTTCCATAG+GGG | + | chr3.2:80667052-80667071 | MS.gene40917:intron | 25.0% |
| ATAAACGGTGCAAATATTTC+TGG | - | chr3.2:80667388-80667407 | None:intergenic | 30.0% | |
| CCAAAGTCCATATTGTAATT+AGG | - | chr3.2:80667126-80667145 | None:intergenic | 30.0% | |
| CCTAATTACAATATGGACTT+TGG | + | chr3.2:80667123-80667142 | MS.gene40917:intron | 30.0% | |
| CTTATTTAAGCGTGACTATT+TGG | - | chr3.2:80665992-80666011 | None:intergenic | 30.0% | |
| GAAGAAGAGAGAAAAAGAAA+TGG | + | chr3.2:80666374-80666393 | MS.gene40917:intron | 30.0% | |
| GTTTAAGAAGCTTATCGATA+AGG | - | chr3.2:80665572-80665591 | None:intergenic | 30.0% | |
| TAAACGGTGCAAATATTTCT+GGG | - | chr3.2:80667387-80667406 | None:intergenic | 30.0% | |
| TACAAAGCTTCTCAATCTTA+AGG | + | chr3.2:80665458-80665477 | MS.gene40917:CDS | 30.0% | |
| TCATCTACAGTCTCAAAAAT+AGG | - | chr3.2:80666134-80666153 | None:intergenic | 30.0% | |
| TGTAGATGAGATGTTGAAAT+GGG | + | chr3.2:80666145-80666164 | MS.gene40917:CDS | 30.0% | |
| TGTGCGTTCATCTAATTTAA+AGG | + | chr3.2:80667534-80667553 | MS.gene40917:CDS | 30.0% | |
| TGTTAATGCATTCGAAAATG+CGG | + | chr3.2:80667432-80667451 | MS.gene40917:CDS | 30.0% | |
| TTAAGAAGCTTATCGATAAG+GGG | - | chr3.2:80665570-80665589 | None:intergenic | 30.0% | |
| ! | AATATCTTGAGAGTATGAGT+CGG | - | chr3.2:80667501-80667520 | None:intergenic | 30.0% |
| ! | AGTTGTAATTTAGAATGCTG+TGG | + | chr3.2:80666070-80666089 | MS.gene40917:intron | 30.0% |
| ! | CTCATACTCTCAAGATATTT+TGG | + | chr3.2:80667502-80667521 | MS.gene40917:CDS | 30.0% |
| ! | GAAACGAGATTTTCAACAAA+AGG | - | chr3.2:80665597-80665616 | None:intergenic | 30.0% |
| ! | GTGTTCAAATACTTGGATTT+TGG | - | chr3.2:80665334-80665353 | None:intergenic | 30.0% |
| ! | GTTGTAATTTAGAATGCTGT+GGG | + | chr3.2:80666071-80666090 | MS.gene40917:intron | 30.0% |
| ! | TTCAAATACTTGGATTTTGG+TGG | - | chr3.2:80665331-80665350 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAGCTCTCT+AGG | - | chr3.2:80665922-80665941 | None:intergenic | 30.0% |
| !!! | AAGGAATCTTTATTTTACGG+GGG | + | chr3.2:80667023-80667042 | MS.gene40917:intron | 30.0% |
| !!! | AAGTTTTTTTTTCCATAGGG+GGG | + | chr3.2:80667054-80667073 | MS.gene40917:intron | 30.0% |
| !!! | CAAGGAATCTTTATTTTACG+GGG | + | chr3.2:80667022-80667041 | MS.gene40917:intron | 30.0% |
| !!! | CAAGTTTTTTTTTCCATAGG+GGG | + | chr3.2:80667053-80667072 | MS.gene40917:intron | 30.0% |
| !!! | CCAAGGAATCTTTATTTTAC+GGG | + | chr3.2:80667021-80667040 | MS.gene40917:intron | 30.0% |
| AAGATTCTTGGGATGAAGAA+TGG | - | chr3.2:80665424-80665443 | None:intergenic | 35.0% | |
| ATAAGAGTTTGTGCTACGAA+AGG | - | chr3.2:80665837-80665856 | None:intergenic | 35.0% | |
| CAGTTTGATTAAGCGCTTAT+AGG | + | chr3.2:80665745-80665764 | MS.gene40917:intron | 35.0% | |
| CCCGTAAAATAAAGATTCCT+TGG | - | chr3.2:80667024-80667043 | None:intergenic | 35.0% | |
| CTGTAGATGAGATGTTGAAA+TGG | + | chr3.2:80666144-80666163 | MS.gene40917:CDS | 35.0% | |
| GACTGTTTAATCTTACTACG+AGG | + | chr3.2:80666171-80666190 | MS.gene40917:CDS | 35.0% | |
| GAGCTTGAGAAAACAACTTA+TGG | - | chr3.2:80665967-80665986 | None:intergenic | 35.0% | |
| TAAGATGCAGAACTTTGTTC+AGG | + | chr3.2:80665665-80665684 | MS.gene40917:CDS | 35.0% | |
| TGTCGACCATCCAATATAAA+CGG | - | chr3.2:80667403-80667422 | None:intergenic | 35.0% | |
| TTTGCACCGTTTATATTGGA+TGG | + | chr3.2:80667394-80667413 | MS.gene40917:CDS | 35.0% | |
| ! | AAACGGTGCAAATATTTCTG+GGG | - | chr3.2:80667386-80667405 | None:intergenic | 35.0% |
| ! | AGAGTATTTGCGGATGAAAT+GGG | - | chr3.2:80665292-80665311 | None:intergenic | 35.0% |
| ! | ATATCTTGAGAGTATGAGTC+GGG | - | chr3.2:80667500-80667519 | None:intergenic | 35.0% |
| !! | AATACTTGGATTTTGGTGGT+TGG | - | chr3.2:80665327-80665346 | None:intergenic | 35.0% |
| !! | TGGTGTTGTGTTCAAATACT+TGG | - | chr3.2:80665341-80665360 | None:intergenic | 35.0% |
| !!! | AGGAATCTTTATTTTACGGG+GGG | + | chr3.2:80667024-80667043 | MS.gene40917:intron | 35.0% |
| ATGCATCCCATTTGCACTTT+GGG | - | chr3.2:80667162-80667181 | None:intergenic | 40.0% | |
| ATGTACTCATCTTTGCGAGA+AGG | - | chr3.2:80667257-80667276 | None:intergenic | 40.0% | |
| ATTGACAGCGTGAAGATTCT+TGG | - | chr3.2:80665436-80665455 | None:intergenic | 40.0% | |
| ATTTAGCCCCAAAGTGCAAA+TGG | + | chr3.2:80667152-80667171 | MS.gene40917:intron | 40.0% | |
| CTTATCGATAAGGGGAAGAT+TGG | - | chr3.2:80665562-80665581 | None:intergenic | 40.0% | |
| GAGGACTTTACAAGACGAAT+TGG | + | chr3.2:80666190-80666209 | MS.gene40917:CDS | 40.0% | |
| TAAACCAAAAGTCGCCCAAA+TGG | + | chr3.2:80667077-80667096 | MS.gene40917:intron | 40.0% | |
| TCAGGATTGGAACCTAATGT+TGG | + | chr3.2:80667181-80667200 | MS.gene40917:intron | 40.0% | |
| TTGACAGCGTGAAGATTCTT+GGG | - | chr3.2:80665435-80665454 | None:intergenic | 40.0% | |
| TTTAGCCCCAAAGTGCAAAT+GGG | + | chr3.2:80667153-80667172 | MS.gene40917:intron | 40.0% | |
| TTTGAACACAACACCATCGT+CGG | + | chr3.2:80665345-80665364 | MS.gene40917:CDS | 40.0% | |
| ! | GAACTTGTTTCCATCCCAAA+TGG | - | chr3.2:80665514-80665533 | None:intergenic | 40.0% |
| ! | GAGTAGTAGCATGTGCATTT+TGG | - | chr3.2:80665160-80665179 | None:intergenic | 40.0% |
| !! | ACTGGACAAATTTGATGACG+TGG | - | chr3.2:80666971-80666990 | None:intergenic | 40.0% |
| !! | ATATGCTGACTGTTGGCTTT+GGG | + | chr3.2:80666992-80667011 | MS.gene40917:intron | 40.0% |
| !! | GAGAGTATTTGCGGATGAAA+TGG | - | chr3.2:80665293-80665312 | None:intergenic | 40.0% |
| AAGTGCAAATGGGATGCATC+AGG | + | chr3.2:80667163-80667182 | MS.gene40917:intron | 45.0% | |
| AGGAGACAATTCGGATAGAC+TGG | + | chr3.2:80667338-80667357 | MS.gene40917:CDS | 45.0% | |
| CAAATGGGATGCATCAGGAT+TGG | + | chr3.2:80667168-80667187 | MS.gene40917:intron | 45.0% | |
| CTCGTTTCGCTTGTCAATTC+TGG | + | chr3.2:80665609-80665628 | MS.gene40917:CDS | 45.0% | |
| GATGAGATGTTGAAATGGGC+TGG | + | chr3.2:80666149-80666168 | MS.gene40917:CDS | 45.0% | |
| GATGCATCCCATTTGCACTT+TGG | - | chr3.2:80667163-80667182 | None:intergenic | 45.0% | |
| GGACTCATGTTCATTCGCTA+TGG | + | chr3.2:80665630-80665649 | MS.gene40917:CDS | 45.0% | |
| GGAGACAATTCGGATAGACT+GGG | + | chr3.2:80667339-80667358 | MS.gene40917:CDS | 45.0% | |
| GGCAATATTCTCAGCTGACA+CGG | - | chr3.2:80667479-80667498 | None:intergenic | 45.0% | |
| GTGTGAGGAAGGAGACAATT+CGG | + | chr3.2:80667329-80667348 | MS.gene40917:intron | 45.0% | |
| GTTGATGCTGGAGAAAGAAG+AGG | + | chr3.2:80666212-80666231 | MS.gene40917:intron | 45.0% | |
| TAAGGAAGGTCAACAGCAGA+GGG | - | chr3.2:80665182-80665201 | None:intergenic | 45.0% | |
| TAAGGCGAAAGAGCCTAGTT+CGG | + | chr3.2:80665476-80665495 | MS.gene40917:CDS | 45.0% | |
| TCTGGAAATGGGATTCACGT+TGG | + | chr3.2:80666350-80666369 | MS.gene40917:intron | 45.0% | |
| TGCATCCCATTTGCACTTTG+GGG | - | chr3.2:80667161-80667180 | None:intergenic | 45.0% | |
| TGTTTCTCCTGCGACATTGA+CGG | - | chr3.2:80665385-80665404 | None:intergenic | 45.0% | |
| TTAAGGAAGGTCAACAGCAG+AGG | - | chr3.2:80665183-80665202 | None:intergenic | 45.0% | |
| ! | CAAGACGAATTGGTTGATGC+TGG | + | chr3.2:80666200-80666219 | MS.gene40917:intron | 45.0% |
| ! | GGGATTCTCTCTTGCCATTT+GGG | + | chr3.2:80665497-80665516 | MS.gene40917:CDS | 45.0% |
| ! | TAGCTTCTCGAAGTACTACG+AGG | + | chr3.2:80666094-80666113 | MS.gene40917:CDS | 45.0% |
| ! | TCCAGTCATATGCTGACTGT+TGG | + | chr3.2:80666985-80667004 | MS.gene40917:intron | 45.0% |
| ! | TTCTCTCTTGCCATTTGGGA+TGG | + | chr3.2:80665501-80665520 | MS.gene40917:CDS | 45.0% |
| !! | CATATGCTGACTGTTGGCTT+TGG | + | chr3.2:80666991-80667010 | MS.gene40917:intron | 45.0% |
| !! | TATGCTGACTGTTGGCTTTG+GGG | + | chr3.2:80666993-80667012 | MS.gene40917:intron | 45.0% |
| !!! | ACTTTTGGTTTACCCCCCTA+TGG | - | chr3.2:80667069-80667088 | None:intergenic | 45.0% |
| AAAAGTCGCCCAAATGGCAG+GGG | + | chr3.2:80667083-80667102 | MS.gene40917:intron | 50.0% | |
| AAGGCGAAAGAGCCTAGTTC+GGG | + | chr3.2:80665477-80665496 | MS.gene40917:CDS | 50.0% | |
| ACTGCTTCTCTGACAGTGTG+AGG | + | chr3.2:80667314-80667333 | MS.gene40917:intron | 50.0% | |
| AGCTTGGGAGAGGTTAAGGA+AGG | - | chr3.2:80665196-80665215 | None:intergenic | 50.0% | |
| ATCGGAGTGTGGTTGAGCTT+GGG | - | chr3.2:80665211-80665230 | None:intergenic | 50.0% | |
| ATGATGCAGACGGTGGATGA+GGG | - | chr3.2:80665240-80665259 | None:intergenic | 50.0% | |
| CAAAAGTCGCCCAAATGGCA+GGG | + | chr3.2:80667082-80667101 | MS.gene40917:intron | 50.0% | |
| CGGGATTCTCTCTTGCCATT+TGG | + | chr3.2:80665496-80665515 | MS.gene40917:CDS | 50.0% | |
| CTTCTCTGACAGTGTGAGGA+AGG | + | chr3.2:80667318-80667337 | MS.gene40917:intron | 50.0% | |
| GCAAGAGAGAATCCCGAACT+AGG | - | chr3.2:80665492-80665511 | None:intergenic | 50.0% | |
| GCAGGAGAAACATTCGAAGC+TGG | + | chr3.2:80665393-80665412 | MS.gene40917:CDS | 50.0% | |
| GCCAACAGTCAGCATATGAC+TGG | - | chr3.2:80666989-80667008 | None:intergenic | 50.0% | |
| GTTGAGCTTGGGAGAGGTTA+AGG | - | chr3.2:80665200-80665219 | None:intergenic | 50.0% | |
| TCATCCACCGTCTGCATCAT+CGG | + | chr3.2:80665240-80665259 | MS.gene40917:CDS | 50.0% | |
| TTTGCGGATGAAATGGGCGA+CGG | - | chr3.2:80665286-80665305 | None:intergenic | 50.0% | |
| ! | TCGAAGTACTACGAGGACAC+TGG | + | chr3.2:80666101-80666120 | MS.gene40917:CDS | 50.0% |
| ! | TTTGGTGGTTGGAGTGAGGT+CGG | - | chr3.2:80665316-80665335 | None:intergenic | 50.0% |
| !! | ATGCTGACTGTTGGCTTTGG+GGG | + | chr3.2:80666994-80667013 | MS.gene40917:intron | 50.0% |
| !! | ATTTCTGGGGCGTGATACTG+AGG | - | chr3.2:80667373-80667392 | None:intergenic | 50.0% |
| !! | GGATTTTGGTGGTTGGAGTG+AGG | - | chr3.2:80665320-80665339 | None:intergenic | 50.0% |
| !! | TGAGGTCGGGAGAGTATTTG+CGG | - | chr3.2:80665302-80665321 | None:intergenic | 50.0% |
| !! | TTGGCTTTGGGGGTAAACCA+AGG | + | chr3.2:80667004-80667023 | MS.gene40917:intron | 50.0% |
| !! | TTTCTGGGGCGTGATACTGA+GGG | - | chr3.2:80667372-80667391 | None:intergenic | 50.0% |
| AAAGTCGCCCAAATGGCAGG+GGG | + | chr3.2:80667084-80667103 | MS.gene40917:intron | 55.0% | |
| AGTGTGGTTGAGCTTGGGAG+AGG | - | chr3.2:80665206-80665225 | None:intergenic | 55.0% | |
| ATAGCCACCGTCAATGTCGC+AGG | + | chr3.2:80665375-80665394 | MS.gene40917:CDS | 55.0% | |
| CATCGGAGTGTGGTTGAGCT+TGG | - | chr3.2:80665212-80665231 | None:intergenic | 55.0% | |
| CCAAAAGTCGCCCAAATGGC+AGG | + | chr3.2:80667081-80667100 | MS.gene40917:intron | 55.0% | |
| CGAAAATGCGGCTAGCACCA+TGG | + | chr3.2:80667444-80667463 | MS.gene40917:CDS | 55.0% | |
| CGACATTGACGGTGGCTATG+CGG | - | chr3.2:80665374-80665393 | None:intergenic | 55.0% | |
| GAACACAACACCATCGTCGG+TGG | + | chr3.2:80665348-80665367 | MS.gene40917:CDS | 55.0% | |
| GATGATGCAGACGGTGGATG+AGG | - | chr3.2:80665241-80665260 | None:intergenic | 55.0% | |
| TGACACGGCACTTGTCTCCA+TGG | - | chr3.2:80667464-80667483 | None:intergenic | 55.0% | |
| TTCTCCTGCGACATTGACGG+TGG | - | chr3.2:80665382-80665401 | None:intergenic | 55.0% | |
| ! | GCTTTACCCCCCTGCCATTT+GGG | - | chr3.2:80667094-80667113 | None:intergenic | 55.0% |
| ! | TTGGTGGTTGGAGTGAGGTC+GGG | - | chr3.2:80665315-80665334 | None:intergenic | 55.0% |
| !! | CCTGCCATTTGGGCGACTTT+TGG | - | chr3.2:80667084-80667103 | None:intergenic | 55.0% |
| AAGTCGCCCAAATGGCAGGG+GGG | + | chr3.2:80667085-80667104 | MS.gene40917:intron | 60.0% | |
| ACCGTCTGCATCATCGGAGC+CGG | + | chr3.2:80665246-80665265 | MS.gene40917:CDS | 60.0% | |
| ATGCAGACGGTGGATGAGGG+TGG | - | chr3.2:80665237-80665256 | None:intergenic | 60.0% | |
| GGCTTTACCCCCCTGCCATT+TGG | - | chr3.2:80667095-80667114 | None:intergenic | 60.0% | |
| GGTGGATGAGGGTGGTGCAT+CGG | - | chr3.2:80665229-80665248 | None:intergenic | 60.0% | |
| TGCATCATCGGAGCCGGCAT+CGG | + | chr3.2:80665252-80665271 | MS.gene40917:CDS | 60.0% | |
| TGGGGCGTGATACTGAGGGT+AGG | - | chr3.2:80667368-80667387 | None:intergenic | 60.0% | |
| ! | GATGACGTGGCGTGCTGACA+TGG | - | chr3.2:80666958-80666977 | None:intergenic | 60.0% |
| GAGGGTGGTGCATCGGAGTG+TGG | - | chr3.2:80665222-80665241 | None:intergenic | 65.0% | |
| GCGGATGAAATGGGCGACGG+AGG | - | chr3.2:80665283-80665302 | None:intergenic | 65.0% | |
| GGCTCCGATGATGCAGACGG+TGG | - | chr3.2:80665247-80665266 | None:intergenic | 65.0% | |
| ! | ATCATCGGAGCCGGCATCGG+CGG | + | chr3.2:80665255-80665274 | MS.gene40917:CDS | 65.0% |
| ! | GCCGGCTCCGATGATGCAGA+CGG | - | chr3.2:80665250-80665269 | None:intergenic | 65.0% |
| GGCTATGCGGCCACCGACGA+TGG | - | chr3.2:80665361-80665380 | None:intergenic | 70.0% | |
| GACGGAGGAGCCGCCGATGC+CGG | - | chr3.2:80665268-80665287 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80665153 | 80667594 | 80665153 | ID=MS.gene40917 |
| chr3.2 | mRNA | 80665153 | 80667594 | 80665153 | ID=MS.gene40917.t1;Parent=MS.gene40917 |
| chr3.2 | exon | 80665153 | 80665686 | 80665153 | ID=MS.gene40917.t1.exon1;Parent=MS.gene40917.t1 |
| chr3.2 | CDS | 80665153 | 80665686 | 80665153 | ID=cds.MS.gene40917.t1;Parent=MS.gene40917.t1 |
| chr3.2 | exon | 80666083 | 80666211 | 80666083 | ID=MS.gene40917.t1.exon2;Parent=MS.gene40917.t1 |
| chr3.2 | CDS | 80666083 | 80666211 | 80666083 | ID=cds.MS.gene40917.t1;Parent=MS.gene40917.t1 |
| chr3.2 | exon | 80666738 | 80666856 | 80666738 | ID=MS.gene40917.t1.exon3;Parent=MS.gene40917.t1 |
| chr3.2 | CDS | 80666738 | 80666856 | 80666738 | ID=cds.MS.gene40917.t1;Parent=MS.gene40917.t1 |
| chr3.2 | exon | 80667330 | 80667594 | 80667330 | ID=MS.gene40917.t1.exon4;Parent=MS.gene40917.t1 |
| chr3.2 | CDS | 80667330 | 80667594 | 80667330 | ID=cds.MS.gene40917.t1;Parent=MS.gene40917.t1 |
| Gene Sequence |
| Protein sequence |
